Title: Basic Functions for Supporting an Implementation of Best-Worst
Scaling
Description: Provides three basic functions that support an implementation of object case (Case 1) best-worst scaling: one for converting a two-level orthogonal main-effect design/balanced incomplete block design into questions; one for creating a data set suitable for analysis; and one for calculating count-based scores.
Author: Hideo Aizaki
Maintainer: Hideo Aizaki <azk-r@spa.nifty.com>
Diff between support.BWS versions 0.1-4 dated 2017-04-22 and 0.2-0 dated 2018-02-09
DESCRIPTION | 9 - MD5 | 24 +- NAMESPACE | 15 + NEWS | 10 + R/bws.count.R | 345 +++++++++++++++++++++++++++++++++++++++++- R/bws.dataset.R | 362 ++++++++++++++++++++++++++++++--------------- R/bws.sp.R |only data/ricebws1.rda |binary man/bws.count.Rd | 85 +++++----- man/bws.dataset.Rd | 100 ++++++++++-- man/bws.questionnaire.Rd | 6 man/bws.sp.Rd |only man/ricebws1.Rd | 4 man/support.BWS-package.Rd | 61 ++++++- 14 files changed, 804 insertions(+), 217 deletions(-)
Title: Tools for Electromyogram Signals (EMG) Analysis
Description: Data processing tools to compute the rectified, integrated and the averaged EMG. Routines for automatic detection of activation phases. A routine to compute and plot the ensemble average of the EMG. An EMG signal simulator for general purposes.
Author: J.A. Guerrero, J.E. Macias-Diaz
Maintainer: Antonio Guerrero <jaguerrero@correo.uaa.mx>
Diff between biosignalEMG versions 2.0.1 dated 2017-03-15 and 2.0.2 dated 2018-02-09
DESCRIPTION | 8 ++++---- MD5 | 8 +++++--- NEWS | 3 +++ R/phasestats.R |only man/biosignalEMG-package.Rd | 4 ++-- man/phasestats.Rd |only 6 files changed, 14 insertions(+), 9 deletions(-)
Title: Power in a Group Sequential Design
Description: Tools the evaluation of interim analysis plans for sequentially
monitored trials on a survival endpoint; tools to construct efficacy and
futility boundaries, for deriving power of a sequential design at a specified
alternative, template for evaluating the performance of candidate plans at a
set of time varying alternatives.
Author: Grant Izmirlian
Maintainer: Grant Izmirlian <izmirlig@mail.nih.gov>
Diff between PwrGSD versions 2.000 dated 2014-03-21 and 2.2 dated 2018-02-09
DESCRIPTION | 6 +++--- MD5 | 23 ++++++++++++----------- NAMESPACE | 12 +++++++++++- R/PwrGSD.R | 28 ++++++++++++++++++++++++---- build/vignette.rds |binary inst/doc/GrpSeqBnds-vignette.pdf |binary inst/doc/PwrGSD-vignette.pdf |binary inst/doc/cpd-PwrGSD-vignette.pdf |binary man/Ch01-PwrGSD.Rd | 8 +++++++- man/Ch0D-GrpSeqBnds.Rd | 7 ++++++- src/SimPwrGSD.c | 2 +- src/WtdLogRank.c | 1 + src/registerDynamicSymbol.c |only 13 files changed, 65 insertions(+), 22 deletions(-)
Title: Analysis of Multivariate Event Times
Description: Implementation of various statistical models for multivariate
event history data <doi:10.1007/s10985-013-9244-x>. Including multivariate
cumulative incidence models <doi:10.1002/sim.6016>, and bivariate random
effects probit models (Liability models) <doi:10.1016/j.csda.2015.01.014>.
Also contains two-stage binomial modelling that can do pairwise odds-ratio
dependence modelling based marginal logistic regression models. This is an
alternative to the alternating logistic regression approach (ALR).
Author: Klaus K. Holst and Thomas Scheike
Maintainer: Klaus K. Holst <klaus@holst.it>
Diff between mets versions 1.2.2 dated 2017-03-31 and 1.2.3 dated 2018-02-09
DESCRIPTION | 21 MD5 | 180 +- NAMESPACE | 46 NEWS | 16 R/Dbvn.R | 5 R/RcppExports.R | 6 R/aalenfrailty.R | 7 R/binomial.twostage.R | 34 R/biprobit.R | 47 R/bptwin.R | 30 R/claytonakes.R | 6 R/clusterindex-reshape.R | 9 R/cor.R | 7 R/daggregate.R | 2 R/dreg.R |only R/dsort.R | 3 R/dtable.R | 8 R/dutils.R | 3 R/fastpattern.R | 2 R/fastreshape.R | 2 R/gof-phreg.R |only R/lifecourse.R | 118 + R/lifetable.R | 75 - R/methodstwinlm.R | 26 R/mets-package.R | 52 R/normal0.R | 4 R/phreg.R | 744 ++++++++++- R/pmvn.R | 33 R/procformula.R | 9 R/prop-odds.R | 14 R/recurrent.marginal.R |only R/sim.clayton.oakes.R | 132 + R/sim.coxph.R |only R/twin.clustertrunc.r | 49 R/twinlm.R | 153 +- R/twostage.R | 258 ++- build/vignette.rds |binary data/base1cumhaz.txt.gz |only data/base44cumhaz.txt.gz |only data/base4cumhaz.txt.gz |only data/datalist | 4 data/drcumhaz.txt.gz |only data/migr.txt.gz |binary data/prt.rda |binary data/twinbmi.txt.gz |binary data/twinstut.txt.gz |binary inst/CITATION |only inst/devel/dreg.R | 371 +++-- inst/doc/basic-dutils.ltx | 1 inst/doc/basic-dutils.pdf |binary inst/doc/binomial-case-control-ascertainment.ltx | 156 -- inst/doc/binomial-case-control-ascertainment.pdf |binary inst/doc/binomial-family.ltx | 1 inst/doc/binomial-family.pdf |binary inst/doc/binomial-twin.ltx | 1 inst/doc/binomial-twin.pdf |binary inst/doc/index.html |only inst/doc/quantitative-twin.ltx | 1 inst/doc/quantitative-twin.pdf |binary inst/include/mets_RcppExports.h | 6 man/ClaytonOakes.Rd | 2 man/EVaddGam.Rd | 25 man/base1cumhaz.Rd |only man/base44cumhaz.Rd |only man/base4cumhaz.Rd |only man/basehazplot.phreg.Rd |only man/biprobit.Rd | 4 man/count.history.Rd |only man/covarianceRecurrent.Rd |only man/drcumhaz.Rd |only man/dreg.Rd |only man/dtable.Rd | 5 man/easy.binomial.twostage.Rd | 2 man/gof.phreg.Rd |only man/gofG.phreg.Rd |only man/gofM.phreg.Rd |only man/internal.Rd | 6 man/lifecourse.Rd | 11 man/lifetable.matrix.Rd | 14 man/phreg.Rd | 60 man/pmvn.Rd |only man/predict.phreg.Rd |only man/prob.exceed.recurrent.Rd |only man/recurrentMarginal.Rd |only man/simClaytonOakes.Rd | 6 man/simRecurrent.Rd |only man/simRecurrentII.Rd |only man/survival.twostage.Rd | 14 man/twin.clustertrunc.Rd | 4 man/twinlm.Rd | 6 src/RcppExports.cpp | 18 src/aalenfrailty.cpp | 156 ++ src/fastcox.cpp | 1461 +++++++++++++++++++++- src/init.c | 97 + src/quadrule.h |only src/survival-twostage.cpp | 324 +++- src/tools.cpp | 53 vignettes/basic-dutils.ltx | 1 vignettes/basic-dutils.org | 149 ++ vignettes/binomial-case-control-ascertainment.ltx | 156 -- vignettes/binomial-case-control-ascertainment.org | 140 -- vignettes/binomial-family.ltx | 1 vignettes/binomial-twin.ltx | 1 vignettes/quantitative-twin.ltx | 1 vignettes/quantitative-twin.org | 114 + 105 files changed, 4290 insertions(+), 1183 deletions(-)
Title: Reading LSD Results (.res) Files
Description: Interfaces R with LSD. Reads object-oriented data in results files (.res) produced by LSD and creates appropriate multi-dimensional arrays in R. Supports multiple core parallelization of multi-file data reading for increased performance. Also provides functions to extract basic information and statistics from data files. LSD (Laboratory for Simulation Development) is free software developed by Marco Valente (documentation and downloads available at <http://labsimdev.org>).
Author: Marcelo C. Pereira
Maintainer: Marcelo C. Pereira <marcelocpereira@uol.com.br>
Diff between LSDinterface versions 0.3.3 dated 2018-01-03 and 0.4.0 dated 2018-02-09
DESCRIPTION | 8 ++-- MD5 | 6 +-- R/LSDinterface.R | 98 ++++++++++++++++++++---------------------------------- build/partial.rdb |binary 4 files changed, 45 insertions(+), 67 deletions(-)
Title: Hierarchical Multiple Imputation
Description: Runs single level and multilevel imputation models. The user just has to pass the data to the main function and, optionally, his analysis model. Basically the package then translates this analysis model into commands to impute the data according to it with functions from 'mice', 'MCMCglmm' or routines build for this package.
Author: Matthias Speidel [aut, cre] (Institute for Employment Research,
Nuremberg, Germany),
Joerg Drechsler [aut] (Institute for Employment Research, Nuremberg,
Germany),
Shahab Jolani [aut] (Maastricht University, Maastricht, The
Netherlands)
Maintainer: Matthias Speidel <matthias.speidel@googlemail.com>
Diff between hmi versions 0.8.2 dated 2018-01-05 and 0.9.5 dated 2018-02-09
hmi-0.8.2/hmi/R/hmi_imp_binary_multi_2017-10-12.R |only hmi-0.8.2/hmi/R/hmi_imp_binary_single_2017-04-11.R |only hmi-0.8.2/hmi/R/hmi_imp_cat_multi_2017-11-17.R |only hmi-0.8.2/hmi/R/hmi_imp_cat_single_2017-04-13.R |only hmi-0.8.2/hmi/R/hmi_imp_catordered_multi_2017-11-13.R |only hmi-0.8.2/hmi/R/hmi_imp_catordered_single_2017-08-02.R |only hmi-0.8.2/hmi/R/hmi_imp_cont_multi_2017-10-25.R |only hmi-0.8.2/hmi/R/hmi_imp_cont_single_2017-04-11.R |only hmi-0.8.2/hmi/R/hmi_imp_count_multi_2017-10-12.R |only hmi-0.8.2/hmi/R/hmi_imp_count_single_2017-10-12.R |only hmi-0.8.2/hmi/R/hmi_imp_interval_2017-10-17.R |only hmi-0.8.2/hmi/R/hmi_imp_roundedcont_2017-12-27.R |only hmi-0.8.2/hmi/R/hmi_smallfunctions_2017-12-28.R |only hmi-0.8.2/hmi/R/hmi_wrapper_2017-12-20.R |only hmi-0.8.2/hmi/vignettes/my-vignette_cache/html/unnamed-chunk-11_0ac4175e66205dfd106be38a37e47114.RData |only hmi-0.8.2/hmi/vignettes/my-vignette_cache/html/unnamed-chunk-11_0ac4175e66205dfd106be38a37e47114.rdb |only hmi-0.8.2/hmi/vignettes/my-vignette_cache/html/unnamed-chunk-11_0ac4175e66205dfd106be38a37e47114.rdx |only hmi-0.8.2/hmi/vignettes/my-vignette_cache/html/unnamed-chunk-14_7fd56c15a920b1042619aede54534217.RData |only hmi-0.8.2/hmi/vignettes/my-vignette_cache/html/unnamed-chunk-14_7fd56c15a920b1042619aede54534217.rdb |only hmi-0.8.2/hmi/vignettes/my-vignette_cache/html/unnamed-chunk-14_7fd56c15a920b1042619aede54534217.rdx |only hmi-0.8.2/hmi/vignettes/my-vignette_cache/html/unnamed-chunk-3_70ccb6e349d2bea3fb2d0fa48f2a0e69.RData |only hmi-0.8.2/hmi/vignettes/my-vignette_cache/html/unnamed-chunk-3_70ccb6e349d2bea3fb2d0fa48f2a0e69.rdb |only hmi-0.8.2/hmi/vignettes/my-vignette_cache/html/unnamed-chunk-3_70ccb6e349d2bea3fb2d0fa48f2a0e69.rdx |only hmi-0.9.5/hmi/DESCRIPTION | 11 hmi-0.9.5/hmi/MD5 | 183 +++++----- hmi-0.9.5/hmi/NAMESPACE | 9 hmi-0.9.5/hmi/R/hmi_imp_binary_multi_2018-02-03.R |only hmi-0.9.5/hmi/R/hmi_imp_binary_single_2018-02-07.R |only hmi-0.9.5/hmi/R/hmi_imp_cat_multi_2018-02-06.R |only hmi-0.9.5/hmi/R/hmi_imp_cat_single_2018-02-05.R |only hmi-0.9.5/hmi/R/hmi_imp_catordered_multi_2018-02-06.R |only hmi-0.9.5/hmi/R/hmi_imp_catordered_single_2018-02-05.R |only hmi-0.9.5/hmi/R/hmi_imp_cont_multi_2018-02-03.R |only hmi-0.9.5/hmi/R/hmi_imp_cont_single_2018-02-02.R |only hmi-0.9.5/hmi/R/hmi_imp_count_multi_2018-02-07.R |only hmi-0.9.5/hmi/R/hmi_imp_count_single_2018-02-07.R |only hmi-0.9.5/hmi/R/hmi_imp_interval_2018-02-07.R |only hmi-0.9.5/hmi/R/hmi_imp_roundedcont_2018-02-08.R |only hmi-0.9.5/hmi/R/hmi_imp_semicont_multi_2017-10-12.R | 6 hmi-0.9.5/hmi/R/hmi_imp_semicont_single_2017-04-11.R | 10 hmi-0.9.5/hmi/R/hmi_smallfunctions_2018-01-31.R |only hmi-0.9.5/hmi/R/hmi_wrapper_2018-01-31.R |only hmi-0.9.5/hmi/R/nhanes_imp.R |only hmi-0.9.5/hmi/R/nhanes_mod.R |only hmi-0.9.5/hmi/R/nhanes_org.R |only hmi-0.9.5/hmi/data/nhanes_imp.rda |only hmi-0.9.5/hmi/data/nhanes_mod.rda |only hmi-0.9.5/hmi/data/nhanes_org.rda |only hmi-0.9.5/hmi/inst/doc/my-vignette.R | 10 hmi-0.9.5/hmi/inst/doc/my-vignette.Rmd | 12 hmi-0.9.5/hmi/inst/doc/my-vignette.html | 8 hmi-0.9.5/hmi/man/Mode.Rd |only hmi-0.9.5/hmi/man/as.data.frame.interval.Rd | 2 hmi-0.9.5/hmi/man/as.interval.Rd | 2 hmi-0.9.5/hmi/man/center.interval.Rd | 2 hmi-0.9.5/hmi/man/chaincheck.Rd | 2 hmi-0.9.5/hmi/man/cleanup.Rd | 2 hmi-0.9.5/hmi/man/contributions4intervals.Rd | 8 hmi-0.9.5/hmi/man/decompose_interval.Rd | 5 hmi-0.9.5/hmi/man/doubleintegral.Rd | 2 hmi-0.9.5/hmi/man/extract_varnames.Rd | 6 hmi-0.9.5/hmi/man/factors.Rd |only hmi-0.9.5/hmi/man/fixed_intercept_check.Rd | 2 hmi-0.9.5/hmi/man/generate_interval.Rd | 2 hmi-0.9.5/hmi/man/get_type.Rd | 4 hmi-0.9.5/hmi/man/hmi.Rd | 33 + hmi-0.9.5/hmi/man/hmi_pool.Rd | 2 hmi-0.9.5/hmi/man/idf2interval.Rd | 2 hmi-0.9.5/hmi/man/imp_binary_multi.Rd | 7 hmi-0.9.5/hmi/man/imp_binary_single.Rd | 8 hmi-0.9.5/hmi/man/imp_cat_multi.Rd | 9 hmi-0.9.5/hmi/man/imp_cat_single.Rd | 8 hmi-0.9.5/hmi/man/imp_cont_multi.Rd | 9 hmi-0.9.5/hmi/man/imp_cont_single.Rd | 10 hmi-0.9.5/hmi/man/imp_count_multi.Rd | 7 hmi-0.9.5/hmi/man/imp_count_single.Rd | 7 hmi-0.9.5/hmi/man/imp_interval.Rd | 8 hmi-0.9.5/hmi/man/imp_orderedcat_multi.Rd | 7 hmi-0.9.5/hmi/man/imp_orderedcat_single.Rd | 8 hmi-0.9.5/hmi/man/imp_roundedcont.Rd | 15 hmi-0.9.5/hmi/man/imp_semicont_multi.Rd | 6 hmi-0.9.5/hmi/man/imp_semicont_single.Rd | 7 hmi-0.9.5/hmi/man/imputationcycle.Rd | 33 + hmi-0.9.5/hmi/man/interval-add.Rd | 2 hmi-0.9.5/hmi/man/interval-divide.Rd | 2 hmi-0.9.5/hmi/man/interval-multiply.Rd | 2 hmi-0.9.5/hmi/man/interval-subtract.Rd | 2 hmi-0.9.5/hmi/man/interval2idf.Rd | 2 hmi-0.9.5/hmi/man/is.na.interval.Rd | 2 hmi-0.9.5/hmi/man/is_interval.Rd | 2 hmi-0.9.5/hmi/man/list_of_rounding_degrees_maker.Rd |only hmi-0.9.5/hmi/man/list_of_rounding_formulas_maker.Rd |only hmi-0.9.5/hmi/man/list_of_spikes_maker.Rd |only hmi-0.9.5/hmi/man/list_of_types_maker.Rd | 6 hmi-0.9.5/hmi/man/negloglik.Rd | 21 - hmi-0.9.5/hmi/man/negloglik2_intervalsonly.Rd | 8 hmi-0.9.5/hmi/man/nhanes_imp.Rd |only hmi-0.9.5/hmi/man/nhanes_mod.Rd |only hmi-0.9.5/hmi/man/nhanes_org.Rd |only hmi-0.9.5/hmi/man/pbivnormX.Rd | 2 hmi-0.9.5/hmi/man/plot.interval.Rd | 10 hmi-0.9.5/hmi/man/random_intercept_check.Rd | 2 hmi-0.9.5/hmi/man/resetPar.Rd | 2 hmi-0.9.5/hmi/man/sample_imp.Rd | 2 hmi-0.9.5/hmi/man/sampler.Rd | 2 hmi-0.9.5/hmi/man/sna_interval.Rd | 2 hmi-0.9.5/hmi/man/split_interval.Rd | 2 hmi-0.9.5/hmi/man/stand.Rd | 4 hmi-0.9.5/hmi/man/suggest_rounding_degrees.Rd |only hmi-0.9.5/hmi/man/table.Rd |only hmi-0.9.5/hmi/man/table_interval.Rd |only hmi-0.9.5/hmi/vignettes/my-vignette.Rmd | 12 hmi-0.9.5/hmi/vignettes/my-vignette_cache/html/unnamed-chunk-11_1bbd1335c5cb05ee1f5249c99821b625.RData |only hmi-0.9.5/hmi/vignettes/my-vignette_cache/html/unnamed-chunk-11_1bbd1335c5cb05ee1f5249c99821b625.rdb |only hmi-0.9.5/hmi/vignettes/my-vignette_cache/html/unnamed-chunk-11_1bbd1335c5cb05ee1f5249c99821b625.rdx |only hmi-0.9.5/hmi/vignettes/my-vignette_cache/html/unnamed-chunk-14_7a4c632cec377895c25bba41929c3ff7.RData |only hmi-0.9.5/hmi/vignettes/my-vignette_cache/html/unnamed-chunk-14_7a4c632cec377895c25bba41929c3ff7.rdb |only hmi-0.9.5/hmi/vignettes/my-vignette_cache/html/unnamed-chunk-14_7a4c632cec377895c25bba41929c3ff7.rdx |only hmi-0.9.5/hmi/vignettes/my-vignette_cache/html/unnamed-chunk-3_07863cef6b020b8b35e5935f88db9ced.RData |only hmi-0.9.5/hmi/vignettes/my-vignette_cache/html/unnamed-chunk-3_07863cef6b020b8b35e5935f88db9ced.rdb |only hmi-0.9.5/hmi/vignettes/my-vignette_cache/html/unnamed-chunk-3_07863cef6b020b8b35e5935f88db9ced.rdx |only hmi-0.9.5/hmi/vignettes/my-vignette_cache/html/unnamed-chunk-5_ed56add465e8862189dc51015b14f27e.rdb |binary hmi-0.9.5/hmi/vignettes/my-vignette_cache/html/unnamed-chunk-5_ed56add465e8862189dc51015b14f27e.rdx |binary hmi-0.9.5/hmi/vignettes/my-vignette_cache/html/unnamed-chunk-7_c92039ceeaca52695fef74b18684e296.RData |binary 124 files changed, 351 insertions(+), 212 deletions(-)
Title: Handy File and String Manipulation
Description: Convenient functions for moving files, deleting directories,
and a variety of string operations that facilitate manipulating files
and extracting information from strings.
Author: Rory Nolan [aut, cre, cph],
Sergi Padilla-Parra [ths]
Maintainer: Rory Nolan <rorynoolan@gmail.com>
Diff between filesstrings versions 2.0.2 dated 2018-01-05 and 2.0.4 dated 2018-02-09
DESCRIPTION | 6 MD5 | 22 +- NEWS.md | 12 + R/files.R | 16 + R/strings.R | 10 - README.md | 80 +++++--- build/partial.rdb |binary inst/doc/files.html | 346 ++++++++++++++++++++++++++++++------- inst/doc/strings.Rmd | 2 inst/doc/strings.html | 404 +++++++++++++++++++++++++++++++++----------- tests/testthat/test_files.R | 1 vignettes/strings.Rmd | 2 12 files changed, 685 insertions(+), 216 deletions(-)
Title: Psychometric Meta-Analysis Toolkit
Description: Tools for computing bare-bones and psychometric meta-analyses and for generating psychometric data for use in meta-analysis simulations. Supports bare-bones, individual-correction, and artifact-distribution methods for meta-analyzing correlations and d values. Includes tools for converting effect sizes, computing sporadic artifact corrections, reshaping meta-analytic databases, computing multivariate corrections for range variation, and more.
Author: Jeffrey A. Dahlke [aut, cre],
Brenton M. Wiernik [aut],
Michael T. Brannick [ctb],
Jack Kostal [ctb],
Sean Potter [ctb],
Yuejia (Mandy) Teng [ctb]
Maintainer: Jeffrey A. Dahlke <dahlk068@umn.edu>
Diff between psychmeta versions 0.2.2 dated 2018-01-24 and 0.2.3 dated 2018-02-09
DESCRIPTION | 13 +- MD5 | 32 +++--- NEWS | 6 + R/ma_r_ad.R | 4 R/ma_r_ad_bvirr.R | 2 R/simulate_d.R | 26 +++- R/simulate_d_legacy.R |only R/simulate_psych.R | 46 ++++++++ R/simulate_r.R | 239 ++++++++++++++++++++++++++++++--------------- R/simulate_r_legacy.R |only R/var_error.R | 18 +-- R/var_error_tsa.R | 18 +-- man/format_long.Rd | 5 man/format_wide.Rd | 5 man/simulate_d_database.Rd | 4 man/simulate_r_database.Rd | 4 man/var_error_A.Rd | 4 man/var_error_alpha.Rd | 10 - 18 files changed, 298 insertions(+), 138 deletions(-)
Title: Bias Reduction in Generalized Linear Models
Description: Estimation and inference from generalized linear models based on various methods for bias reduction. The 'brglmFit' fitting method can achieve reduction of estimation bias by solving either the mean bias-reducing adjusted score equations in Firth (1993) <doi:10.1093/biomet/80.1.27> and Kosmidis and Firth (2009) <doi:10.1093/biomet/asp055>, or the median bias-reduction adjusted score equations in Kenne et al. (2016) <arXiv:1604.04768>, or through the direct subtraction of an estimate of the bias of the maximum likelihood estimator from the maximum likelihood estimates as in Cordeiro and McCullagh (1991) <http://www.jstor.org/stable/2345592>. Estimation in all cases takes place via a quasi Fisher scoring algorithm, and S3 methods for the construction of of confidence intervals for the reduced-bias estimates are provided. In the special case of generalized linear models for binomial and multinomial responses, the adjusted score approaches return estimates with improved frequentist properties, that are also always finite, even in cases where the maximum likelihood estimates are infinite (e.g. complete and quasi-complete separation). 'brglm2' also provides pre-fit and post-fit methods for detecting separation and infinite maximum likelihood estimates in binomial response generalized linear models.
Author: Ioannis Kosmidis [aut, cre],
Kjell Konis [ctb],
Euloge Clovis Kenne Pagui [ctb],
Nicola Sartori [ctb]
Maintainer: Ioannis Kosmidis <ioannis.kosmidis@warwick.ac.uk>
Diff between brglm2 versions 0.1.5 dated 2017-10-13 and 0.1.6 dated 2018-02-09
DESCRIPTION | 10 - MD5 | 39 ++-- NEWS.md | 11 + R/brglm2-package.R | 3 R/brglmControl.R | 2 R/brglmFit.R | 6 R/brmultinom.R | 2 R/detect_separation.R | 2 README.md | 28 ++- build/vignette.rds |binary inst/dev_resids.R |only inst/doc/iteration.Rmd | 4 inst/doc/iteration.pdf |binary inst/doc/multinomial.html | 394 +++++++++++++++++++++++++++++++++++----------- inst/doc/separation.html | 344 ++++++++++++++++++++++++++++++++-------- man/brglm2.Rd | 2 man/brglmControl.Rd | 11 - man/brglmFit.Rd | 2 man/brmultinom.Rd | 2 man/detect_separation.Rd | 2 vignettes/iteration.Rmd | 4 21 files changed, 656 insertions(+), 212 deletions(-)
Title: Tools to Evaluate DNA Profile Evidence
Description: Tools to determine DNA profile Weight of Evidence.
For further information see the 'likeLTD' guide provided,
Balding, D.J. (2013) <DOI:10.1073/pnas.1219739110>,
or Steele, C.D. et al. (2016) <DOI:10.1515/sagmb-2016-0038>.
Author: David Balding, Adrian Timpson, Christopher Steele, Mayeul d'Avezac, James Hetherington.
Maintainer: Christopher Steele <c.steele.11@ucl.ac.uk>
Diff between likeLTD versions 6.2.1 dated 2017-06-11 and 6.3.0 dated 2018-02-09
DESCRIPTION | 8 - MD5 | 48 ++++--- R/hypothesis-peaks.R | 10 + R/maximize-peaks.R | 24 ++- R/reports-peaks.R | 224 +++++++++++++++++++++++------------- R/reports.R | 71 ++++------- build/vignette.rds |binary data/NISTglobalfiler-db.txt.gz |only data/NISTidentifiler-db.txt.gz |only data/linkage.txt.gz |binary inst/doc/likeLTDguide.pdf |binary inst/doc/usage.Rnw | 4 inst/doc/usage.pdf |binary man/NISTglobalfiler-db.Rd |only man/NISTidentifiler-db.Rd |only man/allele.report.Rd | 6 man/defence.hypothesis.Rd | 8 - man/defence.hypothesis.peaks.Rd | 5 man/evaluate.from.interim.Rd | 8 - man/evaluate.from.interim.peaks.Rd | 7 - man/evaluate.peaks.Rd | 8 - man/load.allele.database.Rd | 34 ++--- man/optimisation.params.peaks.Rd | 8 + man/output.report.peaks.Rd | 3 man/prosecution.hypothesis.Rd | 4 man/prosecution.hypothesis.peaks.Rd | 5 vignettes/usage.Rnw | 4 27 files changed, 286 insertions(+), 203 deletions(-)
Title: Smoothing-Splines Mixed-Effects Models
Description: Fit smoothing-splines mixed-effects models to replicated functional data sets and visualise the results.
Author: Maurice Berk [aut, cre]
Maintainer: Maurice Berk <maurice@mauriceberk.com>
Diff between sme versions 0.8 dated 2013-08-02 and 1.0.2 dated 2018-02-09
sme-0.8/sme/ChangeLog |only sme-1.0.2/sme/DESCRIPTION | 21 sme-1.0.2/sme/MD5 | 52 - sme-1.0.2/sme/NAMESPACE | 12 sme-1.0.2/sme/R/sme.R | 1559 ++++++++++++++++++-------------- sme-1.0.2/sme/build |only sme-1.0.2/sme/inst/doc/Tutorial.R |only sme-1.0.2/sme/inst/doc/Tutorial.Rnw | 770 +++++++-------- sme-1.0.2/sme/inst/doc/Tutorial.pdf |binary sme-1.0.2/sme/man/AICc.Rd | 102 +- sme-1.0.2/sme/man/BICn.Rd | 86 - sme-1.0.2/sme/man/MTB.Rd | 64 - sme-1.0.2/sme/man/getRoughnessMatrix.Rd | 86 - sme-1.0.2/sme/man/inflammatory.Rd | 56 - sme-1.0.2/sme/man/plot.sme.Rd | 90 - sme-1.0.2/sme/man/plotSmeDiagnostic.Rd | 70 - sme-1.0.2/sme/man/plotSmeModel.Rd | 86 - sme-1.0.2/sme/man/plotSmeRaw.Rd | 83 - sme-1.0.2/sme/man/sme.Rd | 158 +-- sme-1.0.2/sme/man/sme.data.frame.Rd | 160 +-- sme-1.0.2/sme/man/sme.list.Rd | 130 +- sme-1.0.2/sme/man/smeObject.Rd | 84 - sme-1.0.2/sme/src/NelderMead.c | 11 sme-1.0.2/sme/src/SME.c | 62 - sme-1.0.2/sme/src/SME.h | 64 + sme-1.0.2/sme/src/init.c |only sme-1.0.2/sme/tests/sme.Rout.save | 136 +- sme-1.0.2/sme/vignettes/Tutorial.Rnw | 770 +++++++-------- sme-1.0.2/sme/vignettes/sme.bib | 392 ++++---- 29 files changed, 2703 insertions(+), 2401 deletions(-)
Title: An R Client to the 'PatentsView' API
Description: Provides functions to simplify the 'PatentsView' API
(<http://www.patentsview.org/api/doc.html>) query language,
send GET and POST requests to the API's seven endpoints, and parse the data
that comes back.
Author: Christopher Baker [aut, cre]
Maintainer: Christopher Baker <chriscrewbaker@gmail.com>
Diff between patentsview versions 0.1.0 dated 2017-07-12 and 0.2.0 dated 2018-02-09
patentsview-0.1.0/patentsview/tests/testthat/test-error-handling.R |only patentsview-0.2.0/patentsview/DESCRIPTION | 12 patentsview-0.2.0/patentsview/LICENSE | 4 patentsview-0.2.0/patentsview/MD5 | 89 - patentsview-0.2.0/patentsview/NAMESPACE | 31 patentsview-0.2.0/patentsview/R/cast-pv-data.R |only patentsview-0.2.0/patentsview/R/check-query.R | 146 - patentsview-0.2.0/patentsview/R/data.R | 44 patentsview-0.2.0/patentsview/R/get-fields.R | 153 - patentsview-0.2.0/patentsview/R/print.R | 118 - patentsview-0.2.0/patentsview/R/process-error.R | 95 - patentsview-0.2.0/patentsview/R/process-resp.R | 100 - patentsview-0.2.0/patentsview/R/query-dsl.R | 324 ++-- patentsview-0.2.0/patentsview/R/search-pv.R | 507 +++--- patentsview-0.2.0/patentsview/R/sysdata.rda |only patentsview-0.2.0/patentsview/R/unnest-pv-data.R | 207 +- patentsview-0.2.0/patentsview/R/utils.R | 89 - patentsview-0.2.0/patentsview/R/validate-args.R | 75 patentsview-0.2.0/patentsview/R/zzz.R | 23 patentsview-0.2.0/patentsview/README.md | 106 - patentsview-0.2.0/patentsview/build/vignette.rds |binary patentsview-0.2.0/patentsview/data/fieldsdf.rda |binary patentsview-0.2.0/patentsview/inst/doc/examples.R | 96 - patentsview-0.2.0/patentsview/inst/doc/examples.Rmd | 161 +- patentsview-0.2.0/patentsview/inst/doc/examples.html | 426 ++--- patentsview-0.2.0/patentsview/inst/doc/getting-started.R | 210 +- patentsview-0.2.0/patentsview/inst/doc/getting-started.Rmd | 413 ++--- patentsview-0.2.0/patentsview/inst/doc/getting-started.html | 776 +++++----- patentsview-0.2.0/patentsview/inst/doc/writing-queries.R | 182 +- patentsview-0.2.0/patentsview/inst/doc/writing-queries.Rmd | 324 ++-- patentsview-0.2.0/patentsview/inst/doc/writing-queries.html | 434 ++--- patentsview-0.2.0/patentsview/man/cast_pv_data.Rd |only patentsview-0.2.0/patentsview/man/fieldsdf.Rd | 60 patentsview-0.2.0/patentsview/man/get_endpoints.Rd | 56 patentsview-0.2.0/patentsview/man/get_fields.Rd | 102 - patentsview-0.2.0/patentsview/man/get_ok_pk.Rd | 54 patentsview-0.2.0/patentsview/man/qry_funs.Rd | 146 - patentsview-0.2.0/patentsview/man/search_pv.Rd | 278 +-- patentsview-0.2.0/patentsview/man/unnest_pv_data.Rd | 80 - patentsview-0.2.0/patentsview/man/with_qfuns.Rd | 88 - patentsview-0.2.0/patentsview/tests/testthat.R | 8 patentsview-0.2.0/patentsview/tests/testthat/test-arg-validation.R | 59 patentsview-0.2.0/patentsview/tests/testthat/test-cast-pv-data.R |only patentsview-0.2.0/patentsview/tests/testthat/test-search-pv.R | 186 +- patentsview-0.2.0/patentsview/tests/testthat/test-unnest-pv-data.R | 37 patentsview-0.2.0/patentsview/vignettes/examples.Rmd | 161 +- patentsview-0.2.0/patentsview/vignettes/getting-started.Rmd | 413 ++--- patentsview-0.2.0/patentsview/vignettes/writing-queries.Rmd | 324 ++-- 48 files changed, 3782 insertions(+), 3415 deletions(-)
Title: Loading NONMEM Output Files and Simulate with Parameter
Uncertainty
Description: Loading NONMEM (NONlinear Mixed-Effect Modeling, <http://www.iconplc.com/innovation/solutions/nonmem/> ) output files and simulate with parameter uncertainty.
Author: Magnus Astrand
Maintainer: Magnus Astrand <magnus.astrand@astrazeneca.com>
Diff between nonmem2R versions 0.1.7 dated 2017-06-20 and 0.1.8 dated 2018-02-09
DESCRIPTION | 8 MD5 | 44 +- NAMESPACE | 23 + R/LoadNonmemOutput.R | 700 ++++++++++++++++++++++++++++++++++++++-------- R/Simulation.R | 16 - R/VPCs.R | 13 R/VPCs_ggplot.R |only R/vpc_read.R |only inst/extdata/run001.cov | 73 ++-- inst/extdata/run001.ext | 42 +- inst/extdata/run001.lst |only man/covload.Rd | 7 man/extFormat.Rd |only man/extToTable.Rd |only man/extTransform.Rd |only man/extload.Rd | 6 man/extload.sub.table.Rd | 7 man/grid.sim.internal1.Rd | 1 man/grid.sim.internal2.Rd | 1 man/grid.sim.internal3.Rd | 1 man/print.extToTable.Rd |only man/print.sumoR.Rd |only man/readVpc.Rd |only man/sumoR.Rd | 25 + man/sumoRU.Rd |only man/systemPSN.Rd |only man/test.grid.sim.Rd | 4 man/vpcfig.Rd | 6 man/vpcfig2.Rd |only 29 files changed, 768 insertions(+), 209 deletions(-)
Title: An Interactive Application for ODE Parameter Inference Using
Gradient Matching
Description: An interactive Shiny application to perform fast parameter inference on
dynamical systems (described by ordinary differential equations) using gradient matching.
Please see the project page for more details.
Author: Joe Wandy
Maintainer: Joe Wandy <joe.wandy@glasgow.ac.uk>
Diff between shinyKGode versions 1.0.3 dated 2018-02-05 and 1.0.4 dated 2018-02-09
DESCRIPTION | 12 ++++++------ MD5 | 6 +++--- inst/application/server.R | 21 ++++++++++----------- inst/application/ui.R | 26 ++++++++++++++++++-------- 4 files changed, 37 insertions(+), 28 deletions(-)
Title: Time Series Analysis and Computational Finance
Description: Time series analysis and computational finance.
Author: Adrian Trapletti [aut],
Kurt Hornik [aut, cre],
Blake LeBaron [ctb] (BDS test code)
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>
Diff between tseries versions 0.10-42 dated 2017-06-22 and 0.10-43 dated 2018-02-09
ChangeLog | 7 +++++++ DESCRIPTION | 6 +++--- MD5 | 22 +++++++++++----------- R/test.R | 6 ++++-- data/NelPlo.rda |binary data/USeconomic.rda |binary data/bev.rda |binary data/camp.rda |binary data/ice.river.rda |binary data/nino.rda |binary data/tcm.rda |binary data/tcmd.rda |binary 12 files changed, 25 insertions(+), 16 deletions(-)
Title: Non Parametric Test for Detecting Changes in the Copula
Description: A non parametric test for change points detection in the dependence between the components of multivariate data, with or without (multiple) changes in the marginal distributions. The full details, justification and examples are published in Rohmer (2016) <doi:10.1016/j.spl.2016.06.026>.
Author: Tom Rohmer
Maintainer: Tom Rohmer <tom.rohmer@univ-lemans.fr>
Diff between npcopTest versions 1.02 dated 2017-01-09 and 1.03 dated 2018-02-09
DESCRIPTION | 10 +++--- MD5 | 11 ++++--- NAMESPACE | 3 -- R/Test.R | 6 ---- man/CopTestdm.Rd | 63 +++++++++++++++++++++++++++----------------- man/kn.Rd | 42 ++++++++++++++++++++--------- src/registerDynamicSymbol.c |only 7 files changed, 82 insertions(+), 53 deletions(-)
Title: Efficient Network Enrichment Analysis Test
Description: Includes functions and examples to compute NEAT, the Network Enrichment Analysis Test described in Signorelli et al. (2016, <DOI:10.1186/s12859-016-1203-6>).
Author: Mirko Signorelli, Veronica Vinciotti and Ernst C. Wit
Maintainer: Mirko Signorelli <m.signorelli@lumc.nl>
Diff between neat versions 1.1.1 dated 2017-07-19 and 1.1.2 dated 2018-02-09
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ build/vignette.rds |binary data/yeast.RData |binary inst/doc/neat.Rmd | 12 ++++++------ inst/doc/neat.html | 17 +++++++++-------- vignettes/neat.Rmd | 12 ++++++------ 7 files changed, 31 insertions(+), 30 deletions(-)
More information about knitrProgressBar at CRAN
Permanent link
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-01-17 3.2.0
2017-11-12 3.1.0
2017-10-15 3.0.0
2017-09-05 2.2.0
2017-05-31 2.1.0
2017-05-14 2.0.0
2016-12-18 1.3.1
2016-10-23 1.3.0
2016-09-01 1.2.0
2016-07-22 1.1.0
2016-07-15 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-01-14 0.3.0
2017-11-12 0.2.0
2017-10-17 0.1.0
Title: Data Structures, Summaries, and Visualisations for Missing Data
Description: Missing values are ubiquitous in data and need to be explored and
handled in the initial stages of analysis. 'naniar' provides data structures
and functions that facilitate the plotting of missing values and examination
of imputations. This allows missing data dependencies to be explored with
minimal deviation from the common work patterns of 'ggplot2' and tidy data.
Author: Nicholas Tierney [aut, cre] (<https://orcid.org/0000-0003-1460-8722>),
Di Cook [aut] (<https://orcid.org/0000-0002-3813-7155>),
Miles McBain [aut] (<https://orcid.org/0000-0003-2865-2548>),
Colin Fay [aut] (<https://orcid.org/0000-0001-7343-1846>),
Jim Hester [ctb]
Maintainer: Nicholas Tierney <nicholas.tierney@gmail.com>
Diff between naniar versions 0.1.0 dated 2017-08-09 and 0.2.0 dated 2018-02-09
naniar-0.1.0/naniar/R/gg-miss-x.R |only naniar-0.1.0/naniar/man/figures/README-unnamed-chunk-4-1.png |only naniar-0.1.0/naniar/man/miss_case_cumsum.Rd |only naniar-0.1.0/naniar/man/miss_var_cumsum.Rd |only naniar-0.1.0/naniar/tests/testthat/test-plots.R |only naniar-0.1.0/naniar/tests/testthat/test-replace-to-na.R |only naniar-0.2.0/naniar/DESCRIPTION | 55 - naniar-0.2.0/naniar/MD5 | 270 +++-- naniar-0.2.0/naniar/NAMESPACE | 20 naniar-0.2.0/naniar/NEWS.md | 60 + naniar-0.2.0/naniar/R/add-cols.R | 102 + naniar-0.2.0/naniar/R/add-n-prop-miss.R | 40 naniar-0.2.0/naniar/R/cast-shadows.R | 26 naniar-0.2.0/naniar/R/data-oceanbuoys.R | 47 naniar-0.2.0/naniar/R/data-pedestrian.R | 20 naniar-0.2.0/naniar/R/data-riskfactors.R | 29 naniar-0.2.0/naniar/R/geom-miss-point.R | 18 naniar-0.2.0/naniar/R/gg-miss-case-cumsum.R |only naniar-0.2.0/naniar/R/gg-miss-case.R |only naniar-0.2.0/naniar/R/gg-miss-fct.R |only naniar-0.2.0/naniar/R/gg-miss-span.R |only naniar-0.2.0/naniar/R/gg-miss-var-cumsum.R |only naniar-0.2.0/naniar/R/gg-miss-var.R |only naniar-0.2.0/naniar/R/gg-miss-which.R |only naniar-0.2.0/naniar/R/label-miss.R | 2 naniar-0.2.0/naniar/R/miss-prop-pct-summary.R | 5 naniar-0.2.0/naniar/R/miss-scan-count.R |only naniar-0.2.0/naniar/R/miss-x-cumsum.R | 28 naniar-0.2.0/naniar/R/miss-x-pct-prop.R | 11 naniar-0.2.0/naniar/R/miss-x-run.R | 2 naniar-0.2.0/naniar/R/miss-x-span.R | 4 naniar-0.2.0/naniar/R/miss-x-summary.R | 85 + naniar-0.2.0/naniar/R/miss-x-table.R | 26 naniar-0.2.0/naniar/R/n-prop-miss-complete-rows.R |only naniar-0.2.0/naniar/R/n-prop-miss-complete.R | 2 naniar-0.2.0/naniar/R/naniar-package.R | 22 naniar-0.2.0/naniar/R/replace-to-na.R | 30 naniar-0.2.0/naniar/R/replace-with-na.R |only naniar-0.2.0/naniar/R/scoped-replace-with-na.R |only naniar-0.2.0/naniar/R/shadow-shifters.R | 11 naniar-0.2.0/naniar/R/shadows.R | 51 naniar-0.2.0/naniar/R/stat-miss-point.R | 2 naniar-0.2.0/naniar/R/utils.R | 45 naniar-0.2.0/naniar/R/where-na.R |only naniar-0.2.0/naniar/README.md | 114 +- naniar-0.2.0/naniar/build/vignette.rds |binary naniar-0.2.0/naniar/data/oceanbuoys.rda |binary naniar-0.2.0/naniar/data/riskfactors.rda |binary naniar-0.2.0/naniar/inst/doc/getting-started-w-naniar.R | 18 naniar-0.2.0/naniar/inst/doc/getting-started-w-naniar.Rmd | 87 + naniar-0.2.0/naniar/inst/doc/getting-started-w-naniar.html | 292 ++--- naniar-0.2.0/naniar/inst/doc/naniar-visualisation.R | 38 naniar-0.2.0/naniar/inst/doc/naniar-visualisation.Rmd | 55 - naniar-0.2.0/naniar/inst/doc/naniar-visualisation.html | 135 +- naniar-0.2.0/naniar/inst/doc/replace-with-na.R |only naniar-0.2.0/naniar/inst/doc/replace-with-na.Rmd |only naniar-0.2.0/naniar/inst/doc/replace-with-na.html |only naniar-0.2.0/naniar/man/add_any_miss.Rd | 26 naniar-0.2.0/naniar/man/add_label_missings.Rd | 6 naniar-0.2.0/naniar/man/add_label_shadow.Rd | 3 naniar-0.2.0/naniar/man/add_miss_cluster.Rd |only naniar-0.2.0/naniar/man/add_n_miss.Rd | 3 naniar-0.2.0/naniar/man/add_prop_miss.Rd | 3 naniar-0.2.0/naniar/man/add_shadow.Rd | 4 naniar-0.2.0/naniar/man/add_shadow_shift.Rd | 11 naniar-0.2.0/naniar/man/as_shadow.Rd | 3 naniar-0.2.0/naniar/man/bind_shadow.Rd | 17 naniar-0.2.0/naniar/man/cast_shadow.Rd | 11 naniar-0.2.0/naniar/man/cast_shadow_shift.Rd | 3 naniar-0.2.0/naniar/man/cast_shadow_shift_label.Rd | 3 naniar-0.2.0/naniar/man/figures/README-facet-by-month-1.png |binary naniar-0.2.0/naniar/man/figures/README-geom-miss-point-1.png |binary naniar-0.2.0/naniar/man/figures/README-gg-miss-span-1.png |binary naniar-0.2.0/naniar/man/figures/README-gg-miss-var-1.png |binary naniar-0.2.0/naniar/man/figures/README-regular-geom-point-1.png |binary naniar-0.2.0/naniar/man/figures/README-shadow-impute-1.png |binary naniar-0.2.0/naniar/man/figures/README-shadow-w-ggplot-1.png |binary naniar-0.2.0/naniar/man/figures/naniar-logo.png |only naniar-0.2.0/naniar/man/gather_shadow.Rd | 4 naniar-0.2.0/naniar/man/geom_miss_point.Rd | 21 naniar-0.2.0/naniar/man/gg_miss_case.Rd | 15 naniar-0.2.0/naniar/man/gg_miss_case_cumsum.Rd | 5 naniar-0.2.0/naniar/man/gg_miss_fct.Rd | 11 naniar-0.2.0/naniar/man/gg_miss_span.Rd | 14 naniar-0.2.0/naniar/man/gg_miss_var.Rd | 11 naniar-0.2.0/naniar/man/gg_miss_var_cumsum.Rd | 7 naniar-0.2.0/naniar/man/gg_miss_which.Rd | 7 naniar-0.2.0/naniar/man/group_by_fun.Rd | 4 naniar-0.2.0/naniar/man/label_miss_1d.Rd | 3 naniar-0.2.0/naniar/man/label_missings.Rd | 3 naniar-0.2.0/naniar/man/miss_case_pct.Rd | 3 naniar-0.2.0/naniar/man/miss_case_prop.Rd | 3 naniar-0.2.0/naniar/man/miss_case_summary.Rd | 9 naniar-0.2.0/naniar/man/miss_case_table.Rd | 3 naniar-0.2.0/naniar/man/miss_prop_summary.Rd | 5 naniar-0.2.0/naniar/man/miss_scan_count.Rd |only naniar-0.2.0/naniar/man/miss_summary.Rd | 10 naniar-0.2.0/naniar/man/miss_var_pct.Rd | 3 naniar-0.2.0/naniar/man/miss_var_prop.Rd | 3 naniar-0.2.0/naniar/man/miss_var_run.Rd | 3 naniar-0.2.0/naniar/man/miss_var_span.Rd | 5 naniar-0.2.0/naniar/man/miss_var_summary.Rd | 8 naniar-0.2.0/naniar/man/miss_var_table.Rd | 3 naniar-0.2.0/naniar/man/n_complete_row.Rd |only naniar-0.2.0/naniar/man/n_miss_row.Rd |only naniar-0.2.0/naniar/man/naniar.Rd | 3 naniar-0.2.0/naniar/man/oceanbuoys.Rd | 48 naniar-0.2.0/naniar/man/pedestrian.Rd | 21 naniar-0.2.0/naniar/man/prop_complete_row.Rd |only naniar-0.2.0/naniar/man/prop_miss_row.Rd |only naniar-0.2.0/naniar/man/reexports.Rd | 2 naniar-0.2.0/naniar/man/replace_to_na.Rd | 30 naniar-0.2.0/naniar/man/replace_with_na.Rd |only naniar-0.2.0/naniar/man/replace_with_na_all.Rd |only naniar-0.2.0/naniar/man/replace_with_na_at.Rd |only naniar-0.2.0/naniar/man/replace_with_na_if.Rd |only naniar-0.2.0/naniar/man/riskfactors.Rd | 29 naniar-0.2.0/naniar/man/shadow_shift.Rd | 3 naniar-0.2.0/naniar/man/stat_miss_point.Rd | 3 naniar-0.2.0/naniar/man/where_na.Rd | 15 naniar-0.2.0/naniar/man/which_na.Rd | 12 naniar-0.2.0/naniar/man/which_var_na.Rd |only naniar-0.2.0/naniar/tests/figs/deps.txt | 7 naniar-0.2.0/naniar/tests/figs/geom-miss-point |only naniar-0.2.0/naniar/tests/figs/gg-miss-case |only naniar-0.2.0/naniar/tests/figs/gg-miss-case-cumsum |only naniar-0.2.0/naniar/tests/figs/gg-miss-fct |only naniar-0.2.0/naniar/tests/figs/gg-miss-span |only naniar-0.2.0/naniar/tests/figs/gg-miss-var-cumsum |only naniar-0.2.0/naniar/tests/figs/gg-miss-var-plot |only naniar-0.2.0/naniar/tests/figs/gg-miss-which |only naniar-0.2.0/naniar/tests/figs/naniar-plots/gg-miss-case-group-and-sort.svg |only naniar-0.2.0/naniar/tests/figs/naniar-plots/gg-miss-case-group.svg |only naniar-0.2.0/naniar/tests/figs/naniar-plots/gg-miss-case-sort.svg |only naniar-0.2.0/naniar/tests/figs/naniar-plots/gg-miss-case.svg | 483 +++------ naniar-0.2.0/naniar/tests/figs/naniar-plots/gg-miss-fct.svg | 534 +++++----- naniar-0.2.0/naniar/tests/figs/naniar-plots/gg-miss-var-group-pct.svg |only naniar-0.2.0/naniar/tests/figs/naniar-plots/gg-miss-var-pct.svg |only naniar-0.2.0/naniar/tests/figs/naniar-plots/gg-miss-var-plot-group.svg |only naniar-0.2.0/naniar/tests/testthat/test-bind-shadow.R | 19 naniar-0.2.0/naniar/tests/testthat/test-cast-shadow.R | 4 naniar-0.2.0/naniar/tests/testthat/test-gather-shadow.R | 2 naniar-0.2.0/naniar/tests/testthat/test-geom-miss-point.R |only naniar-0.2.0/naniar/tests/testthat/test-gg-miss-case-cumsum.R |only naniar-0.2.0/naniar/tests/testthat/test-gg-miss-case.R |only naniar-0.2.0/naniar/tests/testthat/test-gg-miss-fct.R |only naniar-0.2.0/naniar/tests/testthat/test-gg-miss-span.R |only naniar-0.2.0/naniar/tests/testthat/test-gg-miss-var-cumsum.R |only naniar-0.2.0/naniar/tests/testthat/test-gg-miss-var-plot.R |only naniar-0.2.0/naniar/tests/testthat/test-gg-miss-which.R |only naniar-0.2.0/naniar/tests/testthat/test-miss-case-summary.R | 3 naniar-0.2.0/naniar/tests/testthat/test-miss-case-table.R | 2 naniar-0.2.0/naniar/tests/testthat/test-miss-summary.R | 6 naniar-0.2.0/naniar/tests/testthat/test-miss-var-summary.R | 2 naniar-0.2.0/naniar/tests/testthat/test-miss-var-table.R | 2 naniar-0.2.0/naniar/tests/testthat/test-prop-complete.R |only naniar-0.2.0/naniar/tests/testthat/test-prop-miss.R |only naniar-0.2.0/naniar/tests/testthat/test-replace-with-na-scoped-var.R |only naniar-0.2.0/naniar/tests/testthat/test-replace-with-na.R |only naniar-0.2.0/naniar/tests/testthat/test-shadow-shift-inf.R |only naniar-0.2.0/naniar/vignettes/getting-started-w-naniar.Rmd | 87 + naniar-0.2.0/naniar/vignettes/naniar-visualisation.Rmd | 55 - naniar-0.2.0/naniar/vignettes/replace-with-na.Rmd |only 163 files changed, 2001 insertions(+), 1379 deletions(-)