Title: Association Tests for Microbial Lineages on a Taxonomic Tree
Description: A variety of association tests for microbiome data analysis including Quasi-Conditional Association Tests (QCAT) described in Tang Z.-Z. et al.(2017) <doi:10.1093/bioinformatics/btw804> and Zero-Inflated Generalized Dirichlet Multinomial (ZIGDM) tests described in Tang Z.-Z. & Chen G. (2017, submitted).
Author: Zheng-Zheng Tang
Maintainer: Zheng-Zheng Tang <tang@biostat.wisc.edu>
Diff between miLineage versions 2.0 dated 2017-10-20 and 2.1 dated 2018-03-22
DESCRIPTION | 10 +++++----- MD5 | 12 ++++++------ R/miLineage.R | 31 ++++++++++++++++++------------- man/QCAT.Rd | 6 +++--- man/QCAT_GEE.Rd | 10 +++++----- man/ZIGDM.Rd | 18 +++++++++--------- man/miLineage-package.Rd | 8 ++++---- 7 files changed, 50 insertions(+), 45 deletions(-)
Title: Read-Write Support for 'NumPy' Files via 'Rcpp'
Description: The 'cnpy' library written by Carl Rogers provides read and write
facilities for files created with (or for) the 'NumPy' extension for 'Python'.
Vectors and matrices of numeric types can be read or written to and from
files as well as compressed files. Support for integer files is available if
the package has been built with -std=c++11 which should be the default on
all platforms since the release of R 3.3.0.
Author: Dirk Eddelbuettel and Wush Wu
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppCNPy versions 0.2.8 dated 2018-01-04 and 0.2.9 dated 2018-03-22
ChangeLog | 24 ++++++++++++++++++++++++ DESCRIPTION | 13 ++++++------- MD5 | 19 ++++++++++++------- R/utils.R |only build/vignette.rds |binary inst/NEWS.Rd | 11 ++++++++++- inst/doc/RcppCNPy-intro.pdf |binary inst/doc/UsingReticulate.R |only inst/doc/UsingReticulate.Rmd |only inst/doc/UsingReticulate.pdf |only man/RcppCNPy-package.Rd | 9 +++++++-- src/cnpyMod.cpp | 11 +++++++++-- vignettes/UsingReticulate.Rmd |only 13 files changed, 68 insertions(+), 19 deletions(-)
Title: Multivariate Normality Tests
Description: Performs multivariate normality tests and graphical approaches and
implements multivariate outlier detection and univariate normality of marginal
distributions through plots and tests (Korkmaz et al, (2014), <https://journal.r-project.org/archive/2014-2/korkmaz-goksuluk-zararsiz.pdf>).
Author: Selcuk Korkmaz [aut, cre],
Dincer Goksuluk [aut],
Gokmen Zararsiz [aut]
Maintainer: Selcuk Korkmaz <selcukorkmaz@gmail.com>
Diff between MVN versions 5.0 dated 2018-02-24 and 5.1 dated 2018-03-22
MVN-5.0/MVN/README.md |only MVN-5.1/MVN/DESCRIPTION | 11 +- MVN-5.1/MVN/MD5 | 29 +++-- MVN-5.1/MVN/NAMESPACE | 3 MVN-5.1/MVN/R/hzTest.R |only MVN-5.1/MVN/R/mardiaTest.R |only MVN-5.1/MVN/R/mvn.R | 36 +++++++ MVN-5.1/MVN/R/roystonTest.R |only MVN-5.1/MVN/build/vignette.rds |binary MVN-5.1/MVN/inst/doc/MVN.R | 34 +++++- MVN-5.1/MVN/inst/doc/MVN.Rnw | 101 ++++++++++++++------ MVN-5.1/MVN/inst/doc/MVN.pdf |binary MVN-5.1/MVN/man/hzTest.Rd |only MVN-5.1/MVN/man/mardiaTest.Rd |only MVN-5.1/MVN/man/mvn.Rd | 35 ++++++- MVN-5.1/MVN/man/roystonTest.Rd |only MVN-5.1/MVN/vignettes/MVN-concordance.tex | 11 +- MVN-5.1/MVN/vignettes/MVN.Rnw | 101 ++++++++++++++------ MVN-5.1/MVN/vignettes/MVN.bib | 150 ++++++++++++++++-------------- 19 files changed, 353 insertions(+), 158 deletions(-)
Title: Bayesian Model Averaging
Description: Package for Bayesian model averaging and variable selection for linear models,
generalized linear models and survival models (cox
regression).
Author: Adrian Raftery <raftery@uw.edu>, Jennifer Hoeting,
Chris Volinsky, Ian Painter, Ka Yee Yeung
Maintainer: Hana Sevcikova <hanas@uw.edu>
Diff between BMA versions 3.18.7 dated 2017-05-12 and 3.18.8 dated 2018-03-22
ChangeLog | 4 DESCRIPTION | 10 - MD5 | 8 data/vaso.txt.gz |only man/glib.Rd | 443 +++++++++++++++++++++++++++---------------------------- man/vaso.Rd |only 6 files changed, 235 insertions(+), 230 deletions(-)
Title: Template Model Builder: A General Random Effect Tool Inspired by
'ADMB'
Description: With this tool, a user should be able to quickly implement complex
random effect models through simple C++ templates. The package combines
'CppAD' (C++ automatic differentiation), 'Eigen' (templated matrix-vector
library) and 'CHOLMOD' (sparse matrix routines available from R) to obtain an
efficient implementation of the applied Laplace approximation with exact
derivatives. Key features are: Automatic sparseness detection, parallelism
through 'BLAS' and parallel user templates.
Author: Kasper Kristensen [aut, cre, cph],
Brad Bell [cph],
Hans Skaug [ctb],
Arni Magnusson [ctb],
Casper Berg [ctb],
Anders Nielsen [ctb],
Martin Maechler [ctb],
Theo Michelot [ctb],
Mollie Brooks [ctb],
Alex Forrence [ctb],
Christoffer Moesgaard Albertsen [ctb],
Cole Monnahan [ctb]
Maintainer: Kasper Kristensen <kaskr@dtu.dk>
Diff between TMB versions 1.7.12 dated 2017-12-11 and 1.7.13 dated 2018-03-22
DESCRIPTION | 30 ++++----- MD5 | 36 ++++++----- NAMESPACE | 1 NEWS | 17 +++++ R/TMB.R | 53 ++++++++++------- R/normalize.R |only R/sdreport.R | 112 ++++++++++++++++++++++++------------- R/utils.R |only R/zzz.R | 2 inst/include/TMB.hpp | 1 inst/include/dynamic_data.hpp |only inst/include/tmb_core.hpp | 105 ++++++++++++++++++++++++---------- inst/include/tmbutils/array.hpp | 3 inst/include/tmbutils/autodiff.hpp | 4 - inst/include/tmbutils/density.hpp | 97 +++++++++++++++++--------------- inst/include/tmbutils/vector.hpp | 2 man/as.list.sdreport.Rd | 18 +++++ man/normalize.Rd |only man/sdreport.Rd | 6 + src/init.c | 13 ++++ src/solve_subset.c | 95 +++++++++++++++++++++++++++++-- 21 files changed, 419 insertions(+), 176 deletions(-)
Title: Morphometrics using R
Description: The goal of Momocs is to provide a complete, convenient,
reproducible and open-source toolkit for 2D morphometrics.
It includes most common 2D morphometrics approaches on outlines, open outlines, configurations of landmarks, traditional morphometrics, and facilities for data preparation, manipulation and visualization with a consistent grammar throughout.
It allows reproducible, complex morphometric analyses and other morphometrics approaches should be easy to plug in, or develop from, on top of this canvas.
Author: Vincent Bonhomme [aut, cre],
Julien Claude [aut]
Maintainer: Vincent Bonhomme <bonhomme.vincent@gmail.com>
Diff between Momocs versions 1.2.2 dated 2017-09-28 and 1.2.9 dated 2018-03-22
Momocs-1.2.2/Momocs/R/cl-utilities.R |only Momocs-1.2.2/Momocs/R/core-outopn-calibrate.R |only Momocs-1.2.2/Momocs/R/gr-PCA2.R |only Momocs-1.2.2/Momocs/R/gr-g.R |only Momocs-1.2.2/Momocs/R/gr-meanshapes.R |only Momocs-1.2.2/Momocs/R/mult-MANOVA.R |only Momocs-1.2.2/Momocs/R/mult-clust.R |only Momocs-1.2.2/Momocs/R/pkg-nse.R |only Momocs-1.2.2/Momocs/data/datalist |only Momocs-1.2.2/Momocs/inst/NEWS.Rd |only Momocs-1.2.2/Momocs/inst/doc/Momocs_speed_dating.R |only Momocs-1.2.2/Momocs/inst/doc/Momocs_speed_dating.Rmd |only Momocs-1.2.2/Momocs/inst/doc/Momocs_speed_dating.html |only Momocs-1.2.2/Momocs/man/Ntable.Rd |only Momocs-1.2.2/Momocs/man/a2l.Rd |only Momocs-1.2.2/Momocs/man/a2m.Rd |only Momocs-1.2.2/Momocs/man/as.Out.Rd |only Momocs-1.2.2/Momocs/man/bind_db.Rd |only Momocs-1.2.2/Momocs/man/chc2Out.Rd |only Momocs-1.2.2/Momocs/man/chc2pix.Rd |only Momocs-1.2.2/Momocs/man/classify.Rd |only Momocs-1.2.2/Momocs/man/colors_transp.Rd |only Momocs-1.2.2/Momocs/man/conf_ell.Rd |only Momocs-1.2.2/Momocs/man/coo2cpx.Rd |only Momocs-1.2.2/Momocs/man/coo_chull_onion.Rd |only Momocs-1.2.2/Momocs/man/coo_circularityharalick.Rd |only Momocs-1.2.2/Momocs/man/coo_circularitynorm.Rd |only Momocs-1.2.2/Momocs/man/coo_eccentricityboundingbox.Rd |only Momocs-1.2.2/Momocs/man/coo_eccentricityeigen.Rd |only Momocs-1.2.2/Momocs/man/coo_perimcum.Rd |only Momocs-1.2.2/Momocs/man/coo_perimpts.Rd |only Momocs-1.2.2/Momocs/man/coo_scalexy.Rd |only Momocs-1.2.2/Momocs/man/coo_tangle.Rd |only Momocs-1.2.2/Momocs/man/coo_theta3.Rd |only Momocs-1.2.2/Momocs/man/coo_thetapts.Rd |only Momocs-1.2.2/Momocs/man/cpx2coo.Rd |only Momocs-1.2.2/Momocs/man/d2m.Rd |only Momocs-1.2.2/Momocs/man/efourier_norm.Rd |only Momocs-1.2.2/Momocs/man/is_clockwise.Rd |only Momocs-1.2.2/Momocs/man/is_closed.Rd |only Momocs-1.2.2/Momocs/man/l2a.Rd |only Momocs-1.2.2/Momocs/man/l2m.Rd |only Momocs-1.2.2/Momocs/man/list_classes.Rd |only Momocs-1.2.2/Momocs/man/m2a.Rd |only Momocs-1.2.2/Momocs/man/m2d.Rd |only Momocs-1.2.2/Momocs/man/m2l.Rd |only Momocs-1.2.2/Momocs/man/m2ll.Rd |only Momocs-1.2.2/Momocs/man/nef2Coe.Rd |only Momocs-1.2.2/Momocs/man/ntsrow2Coo.Rd |only Momocs-1.2.2/Momocs/man/panel2.Rd |only Momocs-1.2.2/Momocs/man/pix2chc.Rd |only Momocs-1.2.2/Momocs/man/plot.Coo.Rd |only Momocs-1.2.2/Momocs/man/plot2.PCA.Rd |only Momocs-1.2.2/Momocs/man/plot3.PCA.Rd |only Momocs-1.2.2/Momocs/man/pos.shapes.Rd |only Momocs-1.2.2/Momocs/man/rename.Rd |only Momocs-1.2.2/Momocs/man/stack2.Rd |only Momocs-1.2.2/Momocs/man/subset.Rd |only Momocs-1.2.2/Momocs/man/table.Rd |only Momocs-1.2.2/Momocs/man/tps2coo.Rd |only Momocs-1.2.2/Momocs/man/truss.Rd |only Momocs-1.2.2/Momocs/man/vecs_param.Rd |only Momocs-1.2.2/Momocs/vignettes/Momocs_speed_dating.Rmd |only Momocs-1.2.9/Momocs/DESCRIPTION | 38 Momocs-1.2.9/Momocs/MD5 | 605 ++--- Momocs-1.2.9/Momocs/NAMESPACE | 325 ++ Momocs-1.2.9/Momocs/NEWS.md |only Momocs-1.2.9/Momocs/R/Momocs-package.R | 127 - Momocs-1.2.9/Momocs/R/babel-bridges.R | 406 +-- Momocs-1.2.9/Momocs/R/babel-export.R | 67 Momocs-1.2.9/Momocs/R/babel-import.R | 732 +++--- Momocs-1.2.9/Momocs/R/cl-def-CooCoe.R | 63 Momocs-1.2.9/Momocs/R/cl-def-Ldk.R | 90 Momocs-1.2.9/Momocs/R/cl-def-Opn.R | 74 Momocs-1.2.9/Momocs/R/cl-def-Out.R | 208 - Momocs-1.2.9/Momocs/R/cl-def-TraCoe.R | 8 Momocs-1.2.9/Momocs/R/cl-farming.R | 61 Momocs-1.2.9/Momocs/R/cl-handling.R | 520 ++-- Momocs-1.2.9/Momocs/R/cl-helpers.R |only Momocs-1.2.9/Momocs/R/cl-validate.R | 10 Momocs-1.2.9/Momocs/R/coo-ldk-utilities.R | 527 ++++ Momocs-1.2.9/Momocs/R/coo-shapedescriptors.R | 755 ++++-- Momocs-1.2.9/Momocs/R/coo-utilities.R | 1096 ++++++++-- Momocs-1.2.9/Momocs/R/core-calibrate.R |only Momocs-1.2.9/Momocs/R/core-ldk-procrustes.R | 40 Momocs-1.2.9/Momocs/R/core-opn-bezier.R | 4 Momocs-1.2.9/Momocs/R/core-opn-dct.R | 27 Momocs-1.2.9/Momocs/R/core-opn-polynomials.R | 8 Momocs-1.2.9/Momocs/R/core-out-efourier.R | 401 +-- Momocs-1.2.9/Momocs/R/core-out-rfourier.R | 22 Momocs-1.2.9/Momocs/R/core-out-sfourier.R | 46 Momocs-1.2.9/Momocs/R/core-out-tfourier.R | 30 Momocs-1.2.9/Momocs/R/core-premodern.R | 52 Momocs-1.2.9/Momocs/R/core-utils.R |only Momocs-1.2.9/Momocs/R/gr-Coe.R | 10 Momocs-1.2.9/Momocs/R/gr-Coo.R | 155 - Momocs-1.2.9/Momocs/R/gr-LDA.R | 43 Momocs-1.2.9/Momocs/R/gr-MSHAPES.R |only Momocs-1.2.9/Momocs/R/gr-PCA.R | 320 +- Momocs-1.2.9/Momocs/R/gr-TPS.R | 24 Momocs-1.2.9/Momocs/R/gr-domesticplotters.R | 148 - Momocs-1.2.9/Momocs/R/gr-layers.R | 114 - Momocs-1.2.9/Momocs/R/gr-misc.R | 49 Momocs-1.2.9/Momocs/R/gr-morphospaces.R | 30 Momocs-1.2.9/Momocs/R/gr-morphospaces2.R | 29 Momocs-1.2.9/Momocs/R/gr-palettes.R |only Momocs-1.2.9/Momocs/R/gr-themes.R | 2 Momocs-1.2.9/Momocs/R/grindr-drawers.R |only Momocs-1.2.9/Momocs/R/grindr-layers.R |only Momocs-1.2.9/Momocs/R/grindr-mosaic.R |only Momocs-1.2.9/Momocs/R/grindr-papers.R |only Momocs-1.2.9/Momocs/R/grindr-pile.R |only Momocs-1.2.9/Momocs/R/grindr-utils.R |only Momocs-1.2.9/Momocs/R/mult-CLUST.R |only Momocs-1.2.9/Momocs/R/mult-LDA.R | 244 +- Momocs-1.2.9/Momocs/R/mult-Manova.R |only Momocs-1.2.9/Momocs/R/mult-PCA.R | 42 Momocs-1.2.9/Momocs/R/mult-mshapes.R | 25 Momocs-1.2.9/Momocs/R/pkg-datasets.R | 2 Momocs-1.2.9/Momocs/R/pkg-internals.R |only Momocs-1.2.9/Momocs/R/pkg-misc.R | 727 ------ Momocs-1.2.9/Momocs/build/vignette.rds |binary Momocs-1.2.9/Momocs/data/apodemus.rda |binary Momocs-1.2.9/Momocs/data/bot.rda |binary Momocs-1.2.9/Momocs/data/chaff.rda |binary Momocs-1.2.9/Momocs/data/charring.rda |binary Momocs-1.2.9/Momocs/data/flower.rda |binary Momocs-1.2.9/Momocs/data/hearts.rda |binary Momocs-1.2.9/Momocs/data/molars.rda |binary Momocs-1.2.9/Momocs/data/mosquito.rda |binary Momocs-1.2.9/Momocs/data/mouse.rda |binary Momocs-1.2.9/Momocs/data/nsfishes.rda |binary Momocs-1.2.9/Momocs/data/oak.rda |binary Momocs-1.2.9/Momocs/data/olea.rda |binary Momocs-1.2.9/Momocs/data/shapes.rda |binary Momocs-1.2.9/Momocs/data/trilo.rda |binary Momocs-1.2.9/Momocs/data/wings.rda |binary Momocs-1.2.9/Momocs/inst/doc/Momocs_grindr.R |only Momocs-1.2.9/Momocs/inst/doc/Momocs_grindr.Rmd |only Momocs-1.2.9/Momocs/inst/doc/Momocs_grindr.html |only Momocs-1.2.9/Momocs/inst/extdata/whisky_jb.jpg |binary Momocs-1.2.9/Momocs/man/CLUST.Rd | 5 Momocs-1.2.9/Momocs/man/Coe.Rd | 15 Momocs-1.2.9/Momocs/man/Coo.Rd | 13 Momocs-1.2.9/Momocs/man/KMEANS.Rd | 3 Momocs-1.2.9/Momocs/man/LDA.Rd | 36 Momocs-1.2.9/Momocs/man/Ldk.Rd | 8 Momocs-1.2.9/Momocs/man/MANOVA.Rd | 21 Momocs-1.2.9/Momocs/man/MANOVA_PW.Rd | 19 Momocs-1.2.9/Momocs/man/Momocs.Rd | 32 Momocs-1.2.9/Momocs/man/Momocs_help.Rd | 5 Momocs-1.2.9/Momocs/man/Momocs_version.Rd | 14 Momocs-1.2.9/Momocs/man/Opn.Rd | 9 Momocs-1.2.9/Momocs/man/OpnCoe.Rd | 8 Momocs-1.2.9/Momocs/man/Out.Rd | 8 Momocs-1.2.9/Momocs/man/OutCoe.Rd | 8 Momocs-1.2.9/Momocs/man/PCA.Rd | 45 Momocs-1.2.9/Momocs/man/PCcontrib.Rd | 9 Momocs-1.2.9/Momocs/man/Ptolemy.Rd | 3 Momocs-1.2.9/Momocs/man/TraCoe.Rd | 10 Momocs-1.2.9/Momocs/man/add_ldk.Rd | 4 Momocs-1.2.9/Momocs/man/andnow.Rd |only Momocs-1.2.9/Momocs/man/arrange.Rd | 12 Momocs-1.2.9/Momocs/man/as_df.Rd | 46 Momocs-1.2.9/Momocs/man/at_least.Rd | 13 Momocs-1.2.9/Momocs/man/babel.Rd |only Momocs-1.2.9/Momocs/man/boxplot.PCA.Rd | 7 Momocs-1.2.9/Momocs/man/breed.Rd | 15 Momocs-1.2.9/Momocs/man/bridges.Rd |only Momocs-1.2.9/Momocs/man/calibrate_deviations.Rd | 96 Momocs-1.2.9/Momocs/man/calibrate_harmonicpower.Rd | 51 Momocs-1.2.9/Momocs/man/calibrate_r2.Rd | 27 Momocs-1.2.9/Momocs/man/calibrate_reconstructions.Rd | 62 Momocs-1.2.9/Momocs/man/chop.Rd | 18 Momocs-1.2.9/Momocs/man/classification_metrics.Rd | 20 Momocs-1.2.9/Momocs/man/coeff_rearrange.Rd | 6 Momocs-1.2.9/Momocs/man/coeff_sel.Rd | 3 Momocs-1.2.9/Momocs/man/coeff_split.Rd | 2 Momocs-1.2.9/Momocs/man/color_palettes.Rd | 3 Momocs-1.2.9/Momocs/man/color_transparency.Rd |only Momocs-1.2.9/Momocs/man/combine.Rd | 13 Momocs-1.2.9/Momocs/man/complex.Rd |only Momocs-1.2.9/Momocs/man/coo_align.Rd | 26 Momocs-1.2.9/Momocs/man/coo_aligncalliper.Rd | 26 Momocs-1.2.9/Momocs/man/coo_alignminradius.Rd | 26 Momocs-1.2.9/Momocs/man/coo_alignxax.Rd | 26 Momocs-1.2.9/Momocs/man/coo_angle_edge1.Rd |only Momocs-1.2.9/Momocs/man/coo_angle_edges.Rd |only Momocs-1.2.9/Momocs/man/coo_angle_tangent.Rd |only Momocs-1.2.9/Momocs/man/coo_area.Rd | 16 Momocs-1.2.9/Momocs/man/coo_arrows.Rd | 7 Momocs-1.2.9/Momocs/man/coo_baseline.Rd | 26 Momocs-1.2.9/Momocs/man/coo_bookstein.Rd | 26 Momocs-1.2.9/Momocs/man/coo_boundingbox.Rd | 45 Momocs-1.2.9/Momocs/man/coo_calliper.Rd | 43 Momocs-1.2.9/Momocs/man/coo_centdist.Rd | 25 Momocs-1.2.9/Momocs/man/coo_center.Rd | 27 Momocs-1.2.9/Momocs/man/coo_centpos.Rd | 27 Momocs-1.2.9/Momocs/man/coo_centsize.Rd | 2 Momocs-1.2.9/Momocs/man/coo_check.Rd | 4 Momocs-1.2.9/Momocs/man/coo_chull.Rd | 68 Momocs-1.2.9/Momocs/man/coo_circularity.Rd | 85 Momocs-1.2.9/Momocs/man/coo_close.Rd | 60 Momocs-1.2.9/Momocs/man/coo_convexity.Rd | 19 Momocs-1.2.9/Momocs/man/coo_down.Rd | 27 Momocs-1.2.9/Momocs/man/coo_draw.Rd | 7 Momocs-1.2.9/Momocs/man/coo_dxy.Rd | 34 Momocs-1.2.9/Momocs/man/coo_eccentricity.Rd |only Momocs-1.2.9/Momocs/man/coo_elongation.Rd | 20 Momocs-1.2.9/Momocs/man/coo_extract.Rd | 24 Momocs-1.2.9/Momocs/man/coo_flip.Rd | 25 Momocs-1.2.9/Momocs/man/coo_force2close.Rd | 24 Momocs-1.2.9/Momocs/man/coo_interpolate.Rd | 25 Momocs-1.2.9/Momocs/man/coo_intersect_angle.Rd |only Momocs-1.2.9/Momocs/man/coo_intersect_segment.Rd |only Momocs-1.2.9/Momocs/man/coo_is_closed.Rd |only Momocs-1.2.9/Momocs/man/coo_jitter.Rd | 22 Momocs-1.2.9/Momocs/man/coo_left.Rd | 22 Momocs-1.2.9/Momocs/man/coo_length.Rd | 14 Momocs-1.2.9/Momocs/man/coo_likely_clockwise.Rd |only Momocs-1.2.9/Momocs/man/coo_listpanel.Rd | 8 Momocs-1.2.9/Momocs/man/coo_lolli.Rd | 7 Momocs-1.2.9/Momocs/man/coo_lw.Rd | 14 Momocs-1.2.9/Momocs/man/coo_nb.Rd | 23 Momocs-1.2.9/Momocs/man/coo_oscillo.Rd | 8 Momocs-1.2.9/Momocs/man/coo_perim.Rd | 87 Momocs-1.2.9/Momocs/man/coo_plot.Rd | 7 Momocs-1.2.9/Momocs/man/coo_range.Rd |only Momocs-1.2.9/Momocs/man/coo_rectangularity.Rd | 22 Momocs-1.2.9/Momocs/man/coo_rectilinearity.Rd | 27 Momocs-1.2.9/Momocs/man/coo_rev.Rd | 26 Momocs-1.2.9/Momocs/man/coo_right.Rd | 26 Momocs-1.2.9/Momocs/man/coo_rotate.Rd | 25 Momocs-1.2.9/Momocs/man/coo_rotatecenter.Rd | 26 Momocs-1.2.9/Momocs/man/coo_ruban.Rd | 17 Momocs-1.2.9/Momocs/man/coo_sample.Rd | 27 Momocs-1.2.9/Momocs/man/coo_sample_prop.Rd |only Momocs-1.2.9/Momocs/man/coo_samplerr.Rd | 31 Momocs-1.2.9/Momocs/man/coo_scale.Rd | 88 Momocs-1.2.9/Momocs/man/coo_shear.Rd | 26 Momocs-1.2.9/Momocs/man/coo_slice.Rd | 64 Momocs-1.2.9/Momocs/man/coo_slide.Rd | 50 Momocs-1.2.9/Momocs/man/coo_slidedirection.Rd | 44 Momocs-1.2.9/Momocs/man/coo_slidegap.Rd | 29 Momocs-1.2.9/Momocs/man/coo_smooth.Rd | 26 Momocs-1.2.9/Momocs/man/coo_smoothcurve.Rd | 29 Momocs-1.2.9/Momocs/man/coo_solidity.Rd | 22 Momocs-1.2.9/Momocs/man/coo_template.Rd | 60 Momocs-1.2.9/Momocs/man/coo_trans.Rd | 29 Momocs-1.2.9/Momocs/man/coo_trim.Rd | 29 Momocs-1.2.9/Momocs/man/coo_trimbottom.Rd | 29 Momocs-1.2.9/Momocs/man/coo_trimtop.Rd | 29 Momocs-1.2.9/Momocs/man/coo_truss.Rd |only Momocs-1.2.9/Momocs/man/coo_up.Rd | 28 Momocs-1.2.9/Momocs/man/coo_width.Rd | 13 Momocs-1.2.9/Momocs/man/d.Rd | 2 Momocs-1.2.9/Momocs/man/data_apodemus.Rd | 2 Momocs-1.2.9/Momocs/man/data_nsfishes.Rd | 2 Momocs-1.2.9/Momocs/man/def_ldk.Rd | 3 Momocs-1.2.9/Momocs/man/def_ldk_angle.Rd |only Momocs-1.2.9/Momocs/man/def_ldk_tips.Rd |only Momocs-1.2.9/Momocs/man/def_links.Rd | 3 Momocs-1.2.9/Momocs/man/def_slidings.Rd | 2 Momocs-1.2.9/Momocs/man/dfourier.Rd | 23 Momocs-1.2.9/Momocs/man/dfourier_i.Rd | 9 Momocs-1.2.9/Momocs/man/dfourier_shape.Rd | 2 Momocs-1.2.9/Momocs/man/dissolve.Rd | 12 Momocs-1.2.9/Momocs/man/drawers.Rd |only Momocs-1.2.9/Momocs/man/ed.Rd | 2 Momocs-1.2.9/Momocs/man/edi.Rd | 2 Momocs-1.2.9/Momocs/man/edm.Rd | 2 Momocs-1.2.9/Momocs/man/edm_nearest.Rd | 2 Momocs-1.2.9/Momocs/man/efourier.Rd | 69 Momocs-1.2.9/Momocs/man/efourier_i.Rd | 5 Momocs-1.2.9/Momocs/man/efourier_shape.Rd | 10 Momocs-1.2.9/Momocs/man/export.Rd | 57 Momocs-1.2.9/Momocs/man/fac_dispatcher.Rd |only Momocs-1.2.9/Momocs/man/fgProcrustes.Rd | 8 Momocs-1.2.9/Momocs/man/filter.Rd | 8 Momocs-1.2.9/Momocs/man/get_chull_area.Rd | 3 Momocs-1.2.9/Momocs/man/get_ldk.Rd | 2 Momocs-1.2.9/Momocs/man/get_pairs.Rd | 3 Momocs-1.2.9/Momocs/man/get_slidings.Rd | 2 Momocs-1.2.9/Momocs/man/harm_pow.Rd | 3 Momocs-1.2.9/Momocs/man/import_Conte.Rd | 15 Momocs-1.2.9/Momocs/man/import_StereoMorph.Rd | 39 Momocs-1.2.9/Momocs/man/import_jpg.Rd | 25 Momocs-1.2.9/Momocs/man/import_jpg1.Rd | 12 Momocs-1.2.9/Momocs/man/import_tps.Rd | 29 Momocs-1.2.9/Momocs/man/import_txt.Rd | 23 Momocs-1.2.9/Momocs/man/inspect.Rd |only Momocs-1.2.9/Momocs/man/is.Rd | 19 Momocs-1.2.9/Momocs/man/is_equallyspacedradii.Rd | 33 Momocs-1.2.9/Momocs/man/layers.Rd |only Momocs-1.2.9/Momocs/man/ldk_chull.Rd | 7 Momocs-1.2.9/Momocs/man/ldk_confell.Rd | 7 Momocs-1.2.9/Momocs/man/ldk_contour.Rd | 7 Momocs-1.2.9/Momocs/man/ldk_labels.Rd | 7 Momocs-1.2.9/Momocs/man/ldk_links.Rd | 6 Momocs-1.2.9/Momocs/man/lf_structure.Rd | 9 Momocs-1.2.9/Momocs/man/links_all.Rd | 5 Momocs-1.2.9/Momocs/man/links_delaunay.Rd | 1 Momocs-1.2.9/Momocs/man/measure.Rd | 16 Momocs-1.2.9/Momocs/man/morphospace_positions.Rd |only Momocs-1.2.9/Momocs/man/mosaic.Rd |only Momocs-1.2.9/Momocs/man/mshapes.Rd | 17 Momocs-1.2.9/Momocs/man/mutate.Rd | 8 Momocs-1.2.9/Momocs/man/npoly.Rd | 17 Momocs-1.2.9/Momocs/man/opoly.Rd | 16 Momocs-1.2.9/Momocs/man/palettes.Rd |only Momocs-1.2.9/Momocs/man/panel.Coo.Rd | 17 Momocs-1.2.9/Momocs/man/papers.Rd |only Momocs-1.2.9/Momocs/man/perm.Rd | 2 Momocs-1.2.9/Momocs/man/pile.Rd |only Momocs-1.2.9/Momocs/man/plot.LDA.Rd | 19 Momocs-1.2.9/Momocs/man/plot.PCA.Rd | 32 Momocs-1.2.9/Momocs/man/plot_CV.Rd | 3 Momocs-1.2.9/Momocs/man/plot_CV2.Rd | 2 Momocs-1.2.9/Momocs/man/plot_PCA.Rd |only Momocs-1.2.9/Momocs/man/plot_devsegments.Rd | 7 Momocs-1.2.9/Momocs/man/plot_mshapes.Rd | 2 Momocs-1.2.9/Momocs/man/plot_table.Rd |only Momocs-1.2.9/Momocs/man/reLDA.Rd | 3 Momocs-1.2.9/Momocs/man/rePCA.Rd | 1 Momocs-1.2.9/Momocs/man/rearrange_ldk.Rd | 6 Momocs-1.2.9/Momocs/man/reexports.Rd | 4 Momocs-1.2.9/Momocs/man/rescale.Rd | 14 Momocs-1.2.9/Momocs/man/rfourier.Rd | 23 Momocs-1.2.9/Momocs/man/rm_asym.Rd | 3 Momocs-1.2.9/Momocs/man/rm_harm.Rd | 10 Momocs-1.2.9/Momocs/man/rm_uncomplete.Rd | 16 Momocs-1.2.9/Momocs/man/rw_fac.Rd | 16 Momocs-1.2.9/Momocs/man/sample_frac.Rd | 14 Momocs-1.2.9/Momocs/man/sample_n.Rd | 14 Momocs-1.2.9/Momocs/man/scree.Rd | 4 Momocs-1.2.9/Momocs/man/select.Rd | 12 Momocs-1.2.9/Momocs/man/sfourier.Rd | 20 Momocs-1.2.9/Momocs/man/sfourier_i.Rd | 1 Momocs-1.2.9/Momocs/man/sfourier_shape.Rd | 1 Momocs-1.2.9/Momocs/man/slice.Rd | 10 Momocs-1.2.9/Momocs/man/slidings_scheme.Rd | 2 Momocs-1.2.9/Momocs/man/stack.Coo.Rd | 10 Momocs-1.2.9/Momocs/man/symmetry.Rd | 12 Momocs-1.2.9/Momocs/man/tfourier.Rd | 11 Momocs-1.2.9/Momocs/man/tfourier_i.Rd | 1 Momocs-1.2.9/Momocs/man/tfourier_shape.Rd | 1 Momocs-1.2.9/Momocs/man/tie_jpg_txt.Rd | 7 Momocs-1.2.9/Momocs/man/tps_arr.Rd | 1 Momocs-1.2.9/Momocs/man/tps_grid.Rd | 1 Momocs-1.2.9/Momocs/man/tps_iso.Rd | 1 Momocs-1.2.9/Momocs/man/tps_raw.Rd | 1 Momocs-1.2.9/Momocs/man/which_out.Rd | 22 Momocs-1.2.9/Momocs/tests/testthat/test-babel-bridges.R | 20 Momocs-1.2.9/Momocs/tests/testthat/test-babel-import.R | 21 Momocs-1.2.9/Momocs/tests/testthat/test-classes.R | 18 Momocs-1.2.9/Momocs/tests/testthat/test-coo_shapedescriptors.R |only Momocs-1.2.9/Momocs/tests/testthat/test-coo_utilities.R | 41 Momocs-1.2.9/Momocs/tests/testthat/test-datasets.R |only Momocs-1.2.9/Momocs/tests/testthat/test-nse.R | 164 - Momocs-1.2.9/Momocs/vignettes/Momocs_grindr.Rmd |only 360 files changed, 6675 insertions(+), 5250 deletions(-)
Title: Animal Movement Tools
Description: Manage and analyze animal movement data. The functionality of 'amt' includes methods to calculate track statistics (e.g. step lengths, speed, or turning angles), prepare data for fitting habitat selection analyses (resource and step-selection functions), and simulation of space-use from fitted step-selection functions.
Author: Johannes Signer [aut, cre]
Maintainer: Johannes Signer <jsigner@gwdg.de>
Diff between amt versions 0.0.2.0 dated 2018-02-08 and 0.0.3.0 dated 2018-03-22
DESCRIPTION | 8 +-- MD5 | 25 +++++---- NEWS.md |only R/steps.R | 2 R/time_of_day.R | 6 ++ README.md | 2 build/partial.rdb |binary build/vignette.rds |binary inst/doc/p1_getting_started.Rmd | 2 inst/doc/p1_getting_started.html | 101 +++++++++++++++++++-------------------- inst/doc/p4_SSF.Rmd | 2 inst/doc/p4_SSF.html | 75 ++++++++++++++-------------- vignettes/p1_getting_started.Rmd | 2 vignettes/p4_SSF.Rmd | 2 14 files changed, 118 insertions(+), 109 deletions(-)
Title: Simulate and Test Marker Dosage for Dominant Markers in
Autopolyploids
Description: Perform classic chi-squared tests and Ripol et al(1999)
binomial confidence interval approach for autopolyploid
dominant markers. Also, dominant markers may be generated
for families of offspring where either one or both of the
parents possess the marker. Missing values and
misclassified markers may be generated at random.
Author: Peter Baker
Maintainer: Peter Baker <p.baker1@uq.edu.au>
Diff between polySegratio versions 0.2-4 dated 2014-03-06 and 0.2-5 dated 2018-03-22
DESCRIPTION | 17 +++++++---------- MD5 | 17 +++++++++-------- NAMESPACE | 3 +++ README.md |only build/vignette.rds |binary inst/doc/polySegratio-overview.pdf |binary man/polySegratio-package.Rd | 6 +++--- vignettes/tmp/tmp-007.pdf |binary vignettes/tmp/tmp-009.pdf |binary vignettes/tmp/tmp-010.pdf |binary 10 files changed, 22 insertions(+), 21 deletions(-)
Title: Simple Tools for Examining and Cleaning Dirty Data
Description: The main janitor functions can: perfectly format data.frame column
names; provide quick counts of variable combinations (i.e., frequency
tables and crosstabs); and isolate duplicate records. Other janitor functions
nicely format the tabulation results. These tabulate-and-report functions
approximate popular features of SPSS and Microsoft Excel. This package
follows the principles of the "tidyverse" and works well with the pipe function
%>%. janitor was built with beginning-to-intermediate R users in mind and is
optimized for user-friendliness. Advanced R users can already do everything
covered here, but with janitor they can do it faster and save their thinking for
the fun stuff.
Author: Sam Firke [aut, cre],
Chris Haid [ctb],
Ryan Knight [ctb]
Maintainer: Sam Firke <samuel.firke@gmail.com>
Diff between janitor versions 0.3.1 dated 2018-01-04 and 1.0.0 dated 2018-03-22
janitor-0.3.1/janitor/R/add_totals.R |only janitor-0.3.1/janitor/R/adorn_helpers.R |only janitor-0.3.1/janitor/R/ns_to_percents.R |only janitor-0.3.1/janitor/man/ns_to_percents.Rd |only janitor-0.3.1/janitor/tests/testthat/test-ns-to-percents.R |only janitor-0.3.1/janitor/tests/testthat/tests-add-totals-deprecated.R |only janitor-0.3.1/janitor/tools |only janitor-0.3.1/janitor/vignettes/introduction.Rmd |only janitor-1.0.0/janitor/DESCRIPTION | 11 janitor-1.0.0/janitor/MD5 | 128 - janitor-1.0.0/janitor/NAMESPACE | 13 janitor-1.0.0/janitor/NEWS.md | 152 + janitor-1.0.0/janitor/R/adorn_crosstab.R | 111 - janitor-1.0.0/janitor/R/adorn_ns.R |only janitor-1.0.0/janitor/R/adorn_pct_formatting.R |only janitor-1.0.0/janitor/R/adorn_percentages.R |only janitor-1.0.0/janitor/R/adorn_rounding.R |only janitor-1.0.0/janitor/R/adorn_title.R |only janitor-1.0.0/janitor/R/adorn_totals.R |only janitor-1.0.0/janitor/R/as_and_untabyl.R |only janitor-1.0.0/janitor/R/clean_names.R | 89 - janitor-1.0.0/janitor/R/convert_to_NA.R | 30 janitor-1.0.0/janitor/R/crosstab.R | 143 - janitor-1.0.0/janitor/R/excel_dates.R | 11 janitor-1.0.0/janitor/R/get_dupes.R | 58 janitor-1.0.0/janitor/R/get_level_groups.R | 32 janitor-1.0.0/janitor/R/janitor.R | 18 janitor-1.0.0/janitor/R/print_tabyl.R |only janitor-1.0.0/janitor/R/remove_empties.R | 49 janitor-1.0.0/janitor/R/round_half_up.R |only janitor-1.0.0/janitor/R/tabyl.R | 308 ++- janitor-1.0.0/janitor/R/top_levels.R | 58 janitor-1.0.0/janitor/R/use_first_valid_of.R | 58 janitor-1.0.0/janitor/R/utils.R | 4 janitor-1.0.0/janitor/README.md | 209 +- janitor-1.0.0/janitor/build/vignette.rds |binary janitor-1.0.0/janitor/inst/doc/introduction.R | 53 janitor-1.0.0/janitor/inst/doc/introduction.Rmd | 110 - janitor-1.0.0/janitor/inst/doc/introduction.html | 837 +--------- janitor-1.0.0/janitor/inst/doc/janitor.R |only janitor-1.0.0/janitor/inst/doc/janitor.Rmd |only janitor-1.0.0/janitor/inst/doc/janitor.html |only janitor-1.0.0/janitor/inst/doc/tabyls.R |only janitor-1.0.0/janitor/inst/doc/tabyls.Rmd |only janitor-1.0.0/janitor/inst/doc/tabyls.html |only janitor-1.0.0/janitor/man/add_totals_col.Rd | 2 janitor-1.0.0/janitor/man/add_totals_row.Rd | 2 janitor-1.0.0/janitor/man/adorn_crosstab.Rd | 17 janitor-1.0.0/janitor/man/adorn_ns.Rd |only janitor-1.0.0/janitor/man/adorn_pct_formatting.Rd |only janitor-1.0.0/janitor/man/adorn_percentages.Rd |only janitor-1.0.0/janitor/man/adorn_rounding.Rd |only janitor-1.0.0/janitor/man/adorn_title.Rd |only janitor-1.0.0/janitor/man/adorn_totals.Rd | 14 janitor-1.0.0/janitor/man/as_tabyl.Rd |only janitor-1.0.0/janitor/man/clean_names.Rd | 30 janitor-1.0.0/janitor/man/crosstab.Rd | 30 janitor-1.0.0/janitor/man/figures |only janitor-1.0.0/janitor/man/pipe.Rd | 2 janitor-1.0.0/janitor/man/remove_empty.Rd |only janitor-1.0.0/janitor/man/remove_empty_cols.Rd | 2 janitor-1.0.0/janitor/man/remove_empty_rows.Rd | 2 janitor-1.0.0/janitor/man/round_half_up.Rd |only janitor-1.0.0/janitor/man/tabyl.Rd | 55 janitor-1.0.0/janitor/man/top_levels.Rd | 4 janitor-1.0.0/janitor/man/untabyl.Rd |only janitor-1.0.0/janitor/tests/testthat/test-add-totals.R | 287 ++- janitor-1.0.0/janitor/tests/testthat/test-adorn-crosstab.R | 124 - janitor-1.0.0/janitor/tests/testthat/test-adorn-ns.R |only janitor-1.0.0/janitor/tests/testthat/test-adorn-pct-formatting.R |only janitor-1.0.0/janitor/tests/testthat/test-adorn-percentages.R |only janitor-1.0.0/janitor/tests/testthat/test-adorn-rounding.R |only janitor-1.0.0/janitor/tests/testthat/test-adorn-title.R |only janitor-1.0.0/janitor/tests/testthat/test-clean-NAs.R | 17 janitor-1.0.0/janitor/tests/testthat/test-clean-names.R | 78 janitor-1.0.0/janitor/tests/testthat/test-crosstab.R | 113 - janitor-1.0.0/janitor/tests/testthat/test-get-dupes.R | 12 janitor-1.0.0/janitor/tests/testthat/test-remove-empties.R | 52 janitor-1.0.0/janitor/tests/testthat/test-tabyl-classifiers.R |only janitor-1.0.0/janitor/tests/testthat/test-tabyl.R | 307 +++ janitor-1.0.0/janitor/tests/testthat/test-top-levels.R | 29 janitor-1.0.0/janitor/tests/testthat/test-use-first-valid-of.R | 38 janitor-1.0.0/janitor/tests/testthat/test-utilities.R |only janitor-1.0.0/janitor/vignettes/janitor.Rmd |only janitor-1.0.0/janitor/vignettes/tabyls.Rmd |only 85 files changed, 1889 insertions(+), 1810 deletions(-)
Title: Plots of the Empirical Attainment Function
Description: Plots of the empirical attainment function for two objectives.
Author: Manuel López-Ibáñez [aut, cre]
(<https://orcid.org/0000-0001-9974-1295>),
Marco Chiarandini [aut],
Carlos Fonseca [aut],
Luis Paquete [aut],
Thomas Stützle [aut]
Maintainer: Manuel López-Ibáñez <manuel.lopez-ibanez@manchester.ac.uk>
Diff between eaf versions 1.07 dated 2015-01-07 and 1.8 dated 2018-03-22
DESCRIPTION | 33 + MD5 | 88 +++-- NAMESPACE | 18 - NEWS | 27 + R/calls.R | 139 ++++---- R/eaf-package.R |only R/eaf.R | 606 ++++++++++++++++++++++++++++------- README.md |only inst/extdata/ran.10pts.3d.10 |only inst/extdata/spherical-250-10-3d.txt |only inst/extdata/uniform-250-10-3d.txt |only inst/scripts/eaf/GNUmakefile | 21 - inst/scripts/eaf/LICENSE | 4 inst/scripts/eaf/README | 4 inst/scripts/eaf/avl.c |only inst/scripts/eaf/avl.h |only inst/scripts/eaf/eaf.c | 87 ++--- inst/scripts/eaf/eaf.h | 52 ++- inst/scripts/eaf/eaf3d.c |only inst/scripts/eaf/eaf_input.c | 17 inst/scripts/eaf/eaf_io_priv.h | 45 +- inst/scripts/eaf/eaf_main.c | 43 +- inst/scripts/eaf/gcc.mk | 2 inst/scripts/eaf/svn_version | 2 inst/scripts/eafdiff/eafdiff.pl | 90 ++--- inst/scripts/eafplot/eafplot.pl | 135 +++---- man/HybridGA.Rd | 44 +- man/SPEA2minstoptimeRichmond.Rd | 41 -- man/SPEA2relativeRichmond.Rd | 43 +- man/SPEA2relativeVanzyl.Rd | 39 -- man/eaf-package.Rd | 153 +++----- man/eafdiffplot.Rd | 184 +++++----- man/eafplot.Rd | 241 ++++++------- man/eafs.Rd |only man/gcp2x2.Rd | 100 ++--- man/read.data.sets.Rd | 77 +--- src/Makevars | 2 src/Reaf.c | 90 ++--- src/avl.c |only src/avl.h |only src/eaf.c | 87 ++--- src/eaf.h | 52 ++- src/eaf3d.c |only src/eaf_input.c | 17 src/eaf_io_priv.h | 45 +- src/init.c |only tests |only 47 files changed, 1536 insertions(+), 1092 deletions(-)
Title: Immunoglobulin Clonal Lineage and Diversity Analysis
Description: Provides immunoglobulin (Ig) sequence lineage reconstruction,
diversity profiling, and amino acid property analysis.
Citations:
Gupta and Vander Heiden, et al (2017) <doi:10.1093/bioinformatics/btv359>,
Stern, Yaari and Vander Heiden, et al (2014) <doi:10.1126/scitranslmed.3008879>.
Author: Jason Vander Heiden [aut, cre],
Namita Gupta [aut],
Susanna Marquez [ctb],
Daniel Gadala-Maria [ctb],
Roy Jiang [ctb],
Steven Kleinstein [aut, cph]
Maintainer: Jason Vander Heiden <jason.vanderheiden@yale.edu>
Diff between alakazam versions 0.2.8 dated 2017-09-21 and 0.2.9 dated 2018-03-22
alakazam-0.2.8/alakazam/man/plotAbundance.Rd |only alakazam-0.2.9/alakazam/DESCRIPTION | 11 alakazam-0.2.9/alakazam/MD5 | 69 ++-- alakazam-0.2.9/alakazam/NAMESPACE | 8 alakazam-0.2.9/alakazam/NEWS.md | 39 ++ alakazam-0.2.9/alakazam/R/Alakazam.R | 5 alakazam-0.2.9/alakazam/R/Classes.R | 60 +++ alakazam-0.2.9/alakazam/R/Core.R | 23 - alakazam-0.2.9/alakazam/R/Diversity.R | 237 ++++++++++++--- alakazam-0.2.9/alakazam/R/Gene.R | 37 +- alakazam-0.2.9/alakazam/R/Lineage.R | 18 - alakazam-0.2.9/alakazam/R/Sequence.R | 67 +++- alakazam-0.2.9/alakazam/R/Topology.R | 6 alakazam-0.2.9/alakazam/R/sysdata.rda |binary alakazam-0.2.9/alakazam/README.md | 2 alakazam-0.2.9/alakazam/build/vignette.rds |binary alakazam-0.2.9/alakazam/inst/doc/AminoAcids-Vignette.pdf |binary alakazam-0.2.9/alakazam/inst/doc/Diversity-Vignette.R | 34 +- alakazam-0.2.9/alakazam/inst/doc/Diversity-Vignette.Rmd | 38 +- alakazam-0.2.9/alakazam/inst/doc/Diversity-Vignette.pdf |binary alakazam-0.2.9/alakazam/inst/doc/GeneUsage-Vignette.pdf |binary alakazam-0.2.9/alakazam/inst/doc/Lineage-Vignette.pdf |binary alakazam-0.2.9/alakazam/inst/doc/Topology-Vignette.pdf |binary alakazam-0.2.9/alakazam/man/AbundanceCurve-class.Rd |only alakazam-0.2.9/alakazam/man/DiversityCurve-class.Rd | 2 alakazam-0.2.9/alakazam/man/DiversityTest-class.Rd | 8 alakazam-0.2.9/alakazam/man/alakazam.Rd | 2 alakazam-0.2.9/alakazam/man/estimateAbundance.Rd | 2 alakazam-0.2.9/alakazam/man/extractVRegion.Rd | 4 alakazam-0.2.9/alakazam/man/getSegment.Rd | 22 + alakazam-0.2.9/alakazam/man/makeChangeoClone.Rd | 11 alakazam-0.2.9/alakazam/man/maskSeqEnds.Rd | 1 alakazam-0.2.9/alakazam/man/padSeqEnds.Rd |only alakazam-0.2.9/alakazam/man/plotAbundanceCurve.Rd |only alakazam-0.2.9/alakazam/man/plotDiversityCurve.Rd | 21 - alakazam-0.2.9/alakazam/man/plotDiversityTest.Rd |only alakazam-0.2.9/alakazam/man/rarefyDiversity.Rd | 18 - alakazam-0.2.9/alakazam/vignettes/Diversity-Vignette.Rmd | 38 +- 38 files changed, 582 insertions(+), 201 deletions(-)
Title: Metagenome Coverage Estimation and Projections for 'Nonpareil'
Description: Plot, process, and analyze NPO files produced by
'Nonpareil' <http://enve-omics.ce.gatech.edu/nonpareil>.
Author: Luis M. Rodriguez-R [aut, cre]
Maintainer: Luis M. Rodriguez-R <lmrodriguezr@gmail.com>
Diff between Nonpareil versions 3.3 dated 2017-12-05 and 3.3.1 dated 2018-03-22
DESCRIPTION | 6 ++-- MD5 | 26 ++++++++++----------- R/Nonpareil.R | 50 ++++++++++++++++++++++++++++++++++++----- man/Nonpareil.Curve-class.Rd | 3 +- man/Nonpareil.add.curve.Rd | 2 - man/Nonpareil.f.Rd | 2 - man/Nonpareil.legend.Rd | 2 - man/plot.Nonpareil.Curve.Rd | 3 +- man/plot.Nonpareil.Set.Rd | 2 - man/predict.Nonpareil.Curve.Rd | 2 - man/print.Nonpareil.Curve.Rd | 3 +- man/print.Nonpareil.Set.Rd | 3 +- man/summary.Nonpareil.Curve.Rd | 19 +++++++++++++++ man/summary.Nonpareil.Set.Rd | 3 +- 14 files changed, 94 insertions(+), 32 deletions(-)
Title: Data Frames in R for Make
Description: An R-focused pipeline toolkit
for reproducible code and high-performance computing.
Author: William Michael Landau [aut, cre],
Alex Axthelm [ctb],
Jasper Clarkberg [ctb],
Kirill Müller [ctb],
Ben Marwick [rev],
Peter Slaughter [rev],
Eli Lilly and Company [cph]
Maintainer: William Michael Landau <will.landau@gmail.com>
Diff between drake versions 5.0.0 dated 2018-01-26 and 5.1.0 dated 2018-03-22
drake-5.0.0/drake/R/parallel_stages.R |only drake-5.0.0/drake/inst/doc/quickstart.R |only drake-5.0.0/drake/inst/doc/quickstart.Rmd |only drake-5.0.0/drake/inst/doc/quickstart.html |only drake-5.0.0/drake/inst/examples/basic/basic.R |only drake-5.0.0/drake/inst/examples/gsp/run.R |only drake-5.0.0/drake/inst/examples/packages/run.R |only drake-5.0.0/drake/inst/pkgdown |only drake-5.0.0/drake/tests/scenarios/all.Rout |only drake-5.0.0/drake/tests/scenarios/lazy_load.R |only drake-5.0.0/drake/tests/scenarios/nohup.out |only drake-5.0.0/drake/vignettes/logo-vignettes.png |only drake-5.0.0/drake/vignettes/quickstart.Rmd |only drake-5.1.0/drake/DESCRIPTION | 27 drake-5.1.0/drake/MD5 | 585 ++++---- drake-5.1.0/drake/NAMESPACE | 43 drake-5.1.0/drake/R/Makefile.R | 28 drake-5.1.0/drake/R/attempt.R | 9 drake-5.1.0/drake/R/basic_example.R | 120 + drake-5.1.0/drake/R/build.R | 186 +- drake-5.1.0/drake/R/build_times.R | 78 - drake-5.1.0/drake/R/cache.R | 168 +- drake-5.1.0/drake/R/cache_log.R | 91 - drake-5.1.0/drake/R/cache_namespaces.R | 50 drake-5.1.0/drake/R/cache_ui.R | 144 -- drake-5.1.0/drake/R/check.R | 75 - drake-5.1.0/drake/R/clean.R | 160 +- drake-5.1.0/drake/R/color.R | 12 drake-5.1.0/drake/R/commands.R |only drake-5.1.0/drake/R/config.R | 389 ++++- drake-5.1.0/drake/R/console.R | 53 drake-5.1.0/drake/R/dataframes_graph.R | 120 - drake-5.1.0/drake/R/dataframes_graph_utils.R | 86 - drake-5.1.0/drake/R/debug.R | 11 drake-5.1.0/drake/R/dependencies.R | 471 ++++-- drake-5.1.0/drake/R/deprecate.R | 574 +++++--- drake-5.1.0/drake/R/diagnose.R | 85 - drake-5.1.0/drake/R/distributed.R | 14 drake-5.1.0/drake/R/envir.R | 65 drake-5.1.0/drake/R/examples.R | 34 drake-5.1.0/drake/R/expose_imports.R |only drake-5.1.0/drake/R/find.R | 22 drake-5.1.0/drake/R/future.R |only drake-5.1.0/drake/R/future_lapply.R | 5 drake-5.1.0/drake/R/generate.R | 207 ++- drake-5.1.0/drake/R/graph.R | 126 - drake-5.1.0/drake/R/handlers.R | 43 drake-5.1.0/drake/R/hash.R | 64 drake-5.1.0/drake/R/hooks.R | 56 drake-5.1.0/drake/R/knitr.R | 182 -- drake-5.1.0/drake/R/lapply.R | 2 drake-5.1.0/drake/R/make.R | 400 +---- drake-5.1.0/drake/R/max_useful_jobs.R | 54 drake-5.1.0/drake/R/mclapply.R | 8 drake-5.1.0/drake/R/meta.R | 41 drake-5.1.0/drake/R/migrate.R | 52 drake-5.1.0/drake/R/outdated.R | 51 drake-5.1.0/drake/R/package.R | 30 drake-5.1.0/drake/R/parLapply.R | 2 drake-5.1.0/drake/R/parallel.R | 35 drake-5.1.0/drake/R/parallel_ui.R | 113 - drake-5.1.0/drake/R/plot_graph.R | 182 -- drake-5.1.0/drake/R/predict_runtime.R | 105 - drake-5.1.0/drake/R/progress.R | 124 - drake-5.1.0/drake/R/queue.R |only drake-5.1.0/drake/R/random.R | 33 drake-5.1.0/drake/R/read.R | 535 ++++--- drake-5.1.0/drake/R/recipe.R | 75 - drake-5.1.0/drake/R/run.R | 123 - drake-5.1.0/drake/R/sanitize.R | 48 drake-5.1.0/drake/R/staged_parallelism.R |only drake-5.1.0/drake/R/store.R | 66 drake-5.1.0/drake/R/strings.R | 83 - drake-5.1.0/drake/R/test.R | 8 drake-5.1.0/drake/R/test_scenarios.R | 9 drake-5.1.0/drake/R/tidyselect_reexport.R |only drake-5.1.0/drake/R/timestamp.R | 10 drake-5.1.0/drake/R/tips.R | 24 drake-5.1.0/drake/R/triggers.R | 24 drake-5.1.0/drake/R/utils.R |only drake-5.1.0/drake/R/workplan.R | 460 +++++- drake-5.1.0/drake/R/zzz.R | 2 drake-5.1.0/drake/build/vignette.rds |binary drake-5.1.0/drake/inst/WORDLIST | 5 drake-5.1.0/drake/inst/doc/best-practices.R | 137 +- drake-5.1.0/drake/inst/doc/best-practices.Rmd | 245 +++ drake-5.1.0/drake/inst/doc/best-practices.html | 325 ++++ drake-5.1.0/drake/inst/doc/caution.R | 149 -- drake-5.1.0/drake/inst/doc/caution.Rmd | 256 +-- drake-5.1.0/drake/inst/doc/caution.html | 397 ++--- drake-5.1.0/drake/inst/doc/debug.R | 69 - drake-5.1.0/drake/inst/doc/debug.Rmd | 94 - drake-5.1.0/drake/inst/doc/debug.html | 673 ++++------ drake-5.1.0/drake/inst/doc/drake.R | 21 drake-5.1.0/drake/inst/doc/drake.Rmd | 45 drake-5.1.0/drake/inst/doc/drake.html | 218 +-- drake-5.1.0/drake/inst/doc/example-basic.R |only drake-5.1.0/drake/inst/doc/example-basic.Rmd |only drake-5.1.0/drake/inst/doc/example-basic.html |only drake-5.1.0/drake/inst/doc/example-gsp.R | 22 drake-5.1.0/drake/inst/doc/example-gsp.Rmd | 39 drake-5.1.0/drake/inst/doc/example-gsp.html | 55 drake-5.1.0/drake/inst/doc/example-packages.R | 6 drake-5.1.0/drake/inst/doc/example-packages.Rmd | 31 drake-5.1.0/drake/inst/doc/example-packages.html | 173 +- drake-5.1.0/drake/inst/doc/faq.Rmd |only drake-5.1.0/drake/inst/doc/faq.html |only drake-5.1.0/drake/inst/doc/graph.R | 11 drake-5.1.0/drake/inst/doc/graph.Rmd | 58 drake-5.1.0/drake/inst/doc/graph.html | 53 drake-5.1.0/drake/inst/doc/parallelism.R | 20 drake-5.1.0/drake/inst/doc/parallelism.Rmd | 35 drake-5.1.0/drake/inst/doc/parallelism.html | 62 drake-5.1.0/drake/inst/doc/storage.R | 11 drake-5.1.0/drake/inst/doc/storage.Rmd | 19 drake-5.1.0/drake/inst/doc/storage.html | 213 --- drake-5.1.0/drake/inst/doc/timing.R | 3 drake-5.1.0/drake/inst/doc/timing.Rmd | 15 drake-5.1.0/drake/inst/doc/timing.html | 222 +-- drake-5.1.0/drake/inst/examples/Docker-psock/report.Rmd | 6 drake-5.1.0/drake/inst/examples/basic/R |only drake-5.1.0/drake/inst/examples/basic/clean.R |only drake-5.1.0/drake/inst/examples/basic/interactive-tutorial.R |only drake-5.1.0/drake/inst/examples/basic/make.R |only drake-5.1.0/drake/inst/examples/gsp/R |only drake-5.1.0/drake/inst/examples/gsp/clean.R | 5 drake-5.1.0/drake/inst/examples/gsp/interactive-tutorial.R |only drake-5.1.0/drake/inst/examples/gsp/make.R |only drake-5.1.0/drake/inst/examples/packages/R |only drake-5.1.0/drake/inst/examples/packages/clean.R | 7 drake-5.1.0/drake/inst/examples/packages/interactive-tutorial.R |only drake-5.1.0/drake/inst/examples/packages/make.R |only drake-5.1.0/drake/inst/stubs |only drake-5.1.0/drake/inst/testing/scenarios.csv | 34 drake-5.1.0/drake/inst/testing/test.Rmd | 14 drake-5.1.0/drake/man/Makefile_recipe.Rd | 19 drake-5.1.0/drake/man/analyses.Rd | 10 drake-5.1.0/drake/man/analysis_wildcard.Rd | 6 drake-5.1.0/drake/man/as_drake_filename.Rd | 28 drake-5.1.0/drake/man/as_file.Rd | 10 drake-5.1.0/drake/man/available_hash_algos.Rd | 2 drake-5.1.0/drake/man/backend.Rd | 2 drake-5.1.0/drake/man/build_drake_graph.Rd | 91 + drake-5.1.0/drake/man/build_graph.Rd | 21 drake-5.1.0/drake/man/build_times.Rd | 49 drake-5.1.0/drake/man/built.Rd | 27 drake-5.1.0/drake/man/cache_namespaces.Rd | 2 drake-5.1.0/drake/man/cache_path.Rd | 2 drake-5.1.0/drake/man/cached.Rd | 30 drake-5.1.0/drake/man/check.Rd | 18 drake-5.1.0/drake/man/check_plan.Rd | 29 drake-5.1.0/drake/man/clean.Rd | 54 drake-5.1.0/drake/man/cleaned_namespaces.Rd | 8 drake-5.1.0/drake/man/config.Rd | 54 drake-5.1.0/drake/man/configure_cache.Rd | 42 drake-5.1.0/drake/man/dataframes_graph.Rd | 39 drake-5.1.0/drake/man/dataset_wildcard.Rd | 6 drake-5.1.0/drake/man/default_Makefile_args.Rd | 16 drake-5.1.0/drake/man/default_Makefile_command.Rd | 2 drake-5.1.0/drake/man/default_cache_path.Rd | 2 drake-5.1.0/drake/man/default_graph_title.Rd | 8 drake-5.1.0/drake/man/default_hook.Rd | 4 drake-5.1.0/drake/man/default_long_hash_algo.Rd | 8 drake-5.1.0/drake/man/default_parallelism.Rd | 4 drake-5.1.0/drake/man/default_recipe_command.Rd | 4 drake-5.1.0/drake/man/default_short_hash_algo.Rd | 10 drake-5.1.0/drake/man/default_system2_args.Rd | 4 drake-5.1.0/drake/man/default_trigger.Rd | 4 drake-5.1.0/drake/man/default_verbose.Rd |only drake-5.1.0/drake/man/dependency_profile.Rd | 14 drake-5.1.0/drake/man/deps.Rd | 29 drake-5.1.0/drake/man/diagnose.Rd | 75 - drake-5.1.0/drake/man/do_prework.Rd | 2 drake-5.1.0/drake/man/drake-package.Rd | 2 drake-5.1.0/drake/man/drake_batchtools_tmpl_file.Rd | 6 drake-5.1.0/drake/man/drake_build.Rd | 46 drake-5.1.0/drake/man/drake_cache_log.Rd | 40 drake-5.1.0/drake/man/drake_cache_log_file.Rd | 39 drake-5.1.0/drake/man/drake_config.Rd | 352 ++++- drake-5.1.0/drake/man/drake_example.Rd | 14 drake-5.1.0/drake/man/drake_examples.Rd | 6 drake-5.1.0/drake/man/drake_future_task.Rd |only drake-5.1.0/drake/man/drake_gc.Rd | 40 drake-5.1.0/drake/man/drake_meta.Rd | 27 drake-5.1.0/drake/man/drake_palette.Rd | 4 drake-5.1.0/drake/man/drake_plan.Rd | 145 +- drake-5.1.0/drake/man/drake_quotes.Rd | 2 drake-5.1.0/drake/man/drake_session.Rd | 42 drake-5.1.0/drake/man/drake_strings.Rd | 2 drake-5.1.0/drake/man/drake_unquote.Rd | 6 drake-5.1.0/drake/man/eager_load_target.Rd |only drake-5.1.0/drake/man/empty_hook.Rd | 8 drake-5.1.0/drake/man/evaluate.Rd | 16 drake-5.1.0/drake/man/evaluate_plan.Rd | 2 drake-5.1.0/drake/man/example_drake.Rd | 8 drake-5.1.0/drake/man/examples_drake.Rd | 4 drake-5.1.0/drake/man/expand.Rd | 10 drake-5.1.0/drake/man/expose_imports.Rd |only drake-5.1.0/drake/man/failed.Rd | 38 drake-5.1.0/drake/man/file_in.Rd |only drake-5.1.0/drake/man/file_out.Rd |only drake-5.1.0/drake/man/file_store.Rd |only drake-5.1.0/drake/man/find_cache.Rd | 2 drake-5.1.0/drake/man/find_project.Rd | 2 drake-5.1.0/drake/man/gather.Rd | 12 drake-5.1.0/drake/man/get_cache.Rd | 36 drake-5.1.0/drake/man/ignore.Rd |only drake-5.1.0/drake/man/imported.Rd | 30 drake-5.1.0/drake/man/in_progress.Rd | 40 drake-5.1.0/drake/man/knitr_deps.Rd | 12 drake-5.1.0/drake/man/knitr_in.Rd |only drake-5.1.0/drake/man/legend_nodes.Rd | 12 drake-5.1.0/drake/man/load_basic_example.Rd | 43 drake-5.1.0/drake/man/loadd.Rd | 101 + drake-5.1.0/drake/man/long_hash.Rd | 24 drake-5.1.0/drake/man/make.Rd | 181 +- drake-5.1.0/drake/man/make_imports.Rd | 31 drake-5.1.0/drake/man/make_targets.Rd | 31 drake-5.1.0/drake/man/make_with_config.Rd | 8 drake-5.1.0/drake/man/max_useful_jobs.Rd | 30 drake-5.1.0/drake/man/message_sink_hook.Rd | 6 drake-5.1.0/drake/man/migrate_drake_project.Rd | 2 drake-5.1.0/drake/man/missed.Rd | 6 drake-5.1.0/drake/man/new_cache.Rd | 31 drake-5.1.0/drake/man/next_stage.Rd | 16 drake-5.1.0/drake/man/outdated.Rd | 18 drake-5.1.0/drake/man/output_sink_hook.Rd | 6 drake-5.1.0/drake/man/parallel_stages.Rd | 62 drake-5.1.0/drake/man/parallelism_choices.Rd | 134 + drake-5.1.0/drake/man/plan.Rd | 12 drake-5.1.0/drake/man/plan_analyses.Rd | 4 drake-5.1.0/drake/man/plan_drake.Rd | 12 drake-5.1.0/drake/man/plan_summaries.Rd | 8 drake-5.1.0/drake/man/plot_graph.Rd | 84 - drake-5.1.0/drake/man/possible_targets.Rd | 6 drake-5.1.0/drake/man/predict_runtime.Rd | 25 drake-5.1.0/drake/man/prepare_distributed.Rd | 6 drake-5.1.0/drake/man/progress.Rd | 39 drake-5.1.0/drake/man/prune_drake_graph.Rd | 4 drake-5.1.0/drake/man/r_recipe_wildcard.Rd | 2 drake-5.1.0/drake/man/rate_limiting_times.Rd | 29 drake-5.1.0/drake/man/read_config.Rd | 12 drake-5.1.0/drake/man/read_drake_config.Rd | 35 drake-5.1.0/drake/man/read_drake_graph.Rd | 35 drake-5.1.0/drake/man/read_drake_meta.Rd | 47 drake-5.1.0/drake/man/read_drake_plan.Rd | 29 drake-5.1.0/drake/man/read_drake_seed.Rd |only drake-5.1.0/drake/man/read_graph.Rd | 14 drake-5.1.0/drake/man/read_plan.Rd | 14 drake-5.1.0/drake/man/readd.Rd | 45 drake-5.1.0/drake/man/recover_cache.Rd | 30 drake-5.1.0/drake/man/reduce_plan.Rd |only drake-5.1.0/drake/man/reexports.Rd |only drake-5.1.0/drake/man/render_drake_graph.Rd | 15 drake-5.1.0/drake/man/render_graph.Rd | 26 drake-5.1.0/drake/man/rescue_cache.Rd | 47 drake-5.1.0/drake/man/session.Rd | 14 drake-5.1.0/drake/man/shell_file.Rd | 10 drake-5.1.0/drake/man/short_hash.Rd | 24 drake-5.1.0/drake/man/silencer_hook.Rd | 6 drake-5.1.0/drake/man/store_drake_config.Rd | 2 drake-5.1.0/drake/man/summaries.Rd | 14 drake-5.1.0/drake/man/target_namespaces.Rd | 2 drake-5.1.0/drake/man/this_cache.Rd | 16 drake-5.1.0/drake/man/time_stamps.Rd | 2 drake-5.1.0/drake/man/tracked.Rd | 27 drake-5.1.0/drake/man/triggers.Rd | 44 drake-5.1.0/drake/man/vis_drake_graph.Rd | 76 - drake-5.1.0/drake/man/workflow.Rd | 4 drake-5.1.0/drake/man/workplan.Rd | 4 drake-5.1.0/drake/tests/testthat/test-Makefile.R | 18 drake-5.1.0/drake/tests/testthat/test-basic.R | 49 drake-5.1.0/drake/tests/testthat/test-cache.R | 62 drake-5.1.0/drake/tests/testthat/test-command-changes.R | 8 drake-5.1.0/drake/tests/testthat/test-console.R | 33 drake-5.1.0/drake/tests/testthat/test-custom-caches.R | 10 drake-5.1.0/drake/tests/testthat/test-dbi-cache.R | 2 drake-5.1.0/drake/tests/testthat/test-dependencies.R | 74 - drake-5.1.0/drake/tests/testthat/test-deprecate.R | 58 drake-5.1.0/drake/tests/testthat/test-edge-cases.R | 84 + drake-5.1.0/drake/tests/testthat/test-envir.R | 8 drake-5.1.0/drake/tests/testthat/test-expose-imports.R |only drake-5.1.0/drake/tests/testthat/test-full-build.R | 14 drake-5.1.0/drake/tests/testthat/test-future.R | 82 + drake-5.1.0/drake/tests/testthat/test-generate.R | 158 +- drake-5.1.0/drake/tests/testthat/test-graph.R | 71 - drake-5.1.0/drake/tests/testthat/test-hash.R | 24 drake-5.1.0/drake/tests/testthat/test-import-file.R | 4 drake-5.1.0/drake/tests/testthat/test-import-object.R | 2 drake-5.1.0/drake/tests/testthat/test-intermediate-file.R | 4 drake-5.1.0/drake/tests/testthat/test-knitr.R | 24 drake-5.1.0/drake/tests/testthat/test-lazy-load.R | 47 drake-5.1.0/drake/tests/testthat/test-memory-cache.R | 2 drake-5.1.0/drake/tests/testthat/test-migrate.R | 8 drake-5.1.0/drake/tests/testthat/test-namespaced.R | 7 drake-5.1.0/drake/tests/testthat/test-other-features.R | 142 +- drake-5.1.0/drake/tests/testthat/test-parallel.R | 31 drake-5.1.0/drake/tests/testthat/test-queue.R |only drake-5.1.0/drake/tests/testthat/test-random.R | 67 drake-5.1.0/drake/tests/testthat/test-retry.R | 18 drake-5.1.0/drake/tests/testthat/test-strings.R | 29 drake-5.1.0/drake/tests/testthat/test-tidy-eval.R |only drake-5.1.0/drake/tests/testthat/test-time.R | 18 drake-5.1.0/drake/tests/testthat/test-triggers.R | 6 drake-5.1.0/drake/tests/testthat/test-workflow-plan.R | 343 ++++- drake-5.1.0/drake/vignettes/best-practices.Rmd | 245 +++ drake-5.1.0/drake/vignettes/caution.Rmd | 256 +-- drake-5.1.0/drake/vignettes/debug.Rmd | 94 - drake-5.1.0/drake/vignettes/drake.Rmd | 45 drake-5.1.0/drake/vignettes/example-basic.Rmd |only drake-5.1.0/drake/vignettes/example-gsp.Rmd | 39 drake-5.1.0/drake/vignettes/example-packages.Rmd | 31 drake-5.1.0/drake/vignettes/faq.Rmd |only drake-5.1.0/drake/vignettes/graph.Rmd | 58 drake-5.1.0/drake/vignettes/parallelism.Rmd | 35 drake-5.1.0/drake/vignettes/storage.Rmd | 19 drake-5.1.0/drake/vignettes/timing.Rmd | 15 317 files changed, 10025 insertions(+), 6444 deletions(-)
Title: Bayesian Phylogeographic and Ecological Clustering
Description: Model-based clustering for phylogeographic data comprising mtDNA sequences and geographical locations along with optional environmental characteristics, aiming to identify migration events that led to homogeneous population clusters.
Author: Ioanna Manolopoulou, Axel Hille
Maintainer: Ioanna Manolopoulou <ioanna.manolopoulou@gmail.com>
Diff between BPEC versions 1.1 dated 2017-08-22 and 1.2 dated 2018-03-22
BPEC-1.1/BPEC/R/BPEC.MCMC.R |only BPEC-1.1/BPEC/R/BPEC.Phylo2GE.R |only BPEC-1.1/BPEC/R/BPEC.R |only BPEC-1.1/BPEC/R/BPEC.TreeEdges.R |only BPEC-1.1/BPEC/R/BPEC.TreePlot.R |only BPEC-1.1/BPEC/R/BPEC.functions.R |only BPEC-1.2/BPEC/DESCRIPTION | 8 - BPEC-1.2/BPEC/MD5 | 47 ++++--- BPEC-1.2/BPEC/NAMESPACE | 30 +++- BPEC-1.2/BPEC/R/bpec.R |only BPEC-1.2/BPEC/R/bpec.contourPlot.R | 16 +- BPEC-1.2/BPEC/R/bpec.functions.R |only BPEC-1.2/BPEC/R/bpec.load.R | 11 + BPEC-1.2/BPEC/R/bpec.mcmc.R |only BPEC-1.2/BPEC/R/bpec.phylo2GE.R |only BPEC-1.2/BPEC/R/bpec.treeEdges.R |only BPEC-1.2/BPEC/R/bpec.treePlot.R |only BPEC-1.2/BPEC/data/MacrocnemisCoordsLocsMini.RData |only BPEC-1.2/BPEC/inst |only BPEC-1.2/BPEC/man/MacrocnemisCoordsLocsMini.Rd |only BPEC-1.2/BPEC/man/bpec.Rd | 137 ++++++++------------- BPEC-1.2/BPEC/man/bpec.contourPlot.Rd | 28 +--- BPEC-1.2/BPEC/man/bpec.covariatesPlot.Rd | 14 +- BPEC-1.2/BPEC/man/bpec.geoTree.Rd | 16 +- BPEC-1.2/BPEC/man/bpec.loadCoords.Rd | 14 +- BPEC-1.2/BPEC/man/bpec.loadSeq.Rd | 7 - BPEC-1.2/BPEC/man/bpec.mcmc.Rd | 70 +--------- BPEC-1.2/BPEC/man/bpec.treePlot.Rd | 16 +- BPEC-1.2/BPEC/man/clust.Rd |only BPEC-1.2/BPEC/man/input.Rd |only BPEC-1.2/BPEC/man/mcmc.Rd |only BPEC-1.2/BPEC/man/preproc.Rd |only BPEC-1.2/BPEC/man/tree.Rd |only BPEC-1.2/BPEC/src/bpecfunction.c | 10 - 34 files changed, 196 insertions(+), 228 deletions(-)
Title: An R-Shiny Application for Calculating Cohen's and Fleiss' Kappa
Description: Offers a graphical user interface for the evaluation of inter-rater agreement with Cohen's and Fleiss' Kappa. The calculation of kappa statistics is done using the R package 'irr', so that 'KappaGUI' is essentially a Shiny front-end for 'irr'.
Author: Frédéric Santos
Maintainer: Frédéric Santos <frederic.santos@u-bordeaux.fr>
Diff between KappaGUI versions 2.0.1 dated 2017-08-21 and 2.0.2 dated 2018-03-22
DESCRIPTION | 17 +++---- MD5 | 16 ++++-- NAMESPACE | 2 R/kappaCohen.R |only R/kappaFleiss.R |only inst/KappaShinyApp/server.R | 102 +++++++++++++++++--------------------------- inst/KappaShinyApp/ui.R | 68 +++++++++++++++++++++-------- man/KappaGUI-package.Rd | 14 +++--- man/StartKappa.Rd | 21 ++++++--- man/kappaCohen.Rd |only man/kappaFleiss.Rd |only 11 files changed, 132 insertions(+), 108 deletions(-)
Title: Exploratory and Descriptive Event-Based Data Analysis
Description: Exploratory and descriptive analysis of event based data. Provides methods for describing and selecting process data, and for preparing event log data for process mining. Builds on the S3-class for event logs implemented in the package 'bupaR'.
Author: Gert Janssenswillen [aut, cre],
Marijke Swennen [ctb]
Maintainer: Gert Janssenswillen <gert.janssenswillen@uhasselt.be>
Diff between edeaR versions 0.7.2 dated 2017-12-05 and 0.8.0 dated 2018-03-22
DESCRIPTION | 10 +- MD5 | 83 ++++++++++++---------- R/activity_frequency_case.R | 15 +++- R/edeaR.R | 2 R/end_activities_activity.R | 2 R/end_activities_case.R | 3 R/end_activities_resource.R | 3 R/end_activities_resource_activity.R | 1 R/filter_resource_frequency.R | 2 R/filter_time_period.R | 48 +++++++++---- R/filter_trim.R | 6 + R/generate_pattern_dummies.R | 4 - R/idle_time.R | 2 R/idle_time_case.R | 2 R/idle_time_resource.R | 2 R/number_of_repetitions.R | 19 ++++- R/number_of_selfloops.R | 34 +++++++-- R/processing_time.R | 2 R/repetitions_all.R |only R/repetitions_redo.R |only R/repetitions_repeat.R |only R/resource_frequency_resource_activity.R | 2 R/rework_base.R |only R/rework_functions.R | 4 - R/selfloops_all.R |only R/selfloops_redo.R |only R/selfloops_repeat.R |only R/size_of_repetitions.R | 18 ++++ R/size_of_selfloops.R | 19 ++++- R/start_activities_activity.R | 2 R/start_activities_case.R | 8 +- R/start_activities_resource.R | 10 +- R/start_activities_resource_activity.R | 8 +- R/throughput_time.R | 2 R/trace_length_trace.R | 5 - build/vignette.rds |binary inst/doc/filters.html | 107 ++++++++++++++++------------- inst/doc/metrics.html | 112 ++++++++++++++----------------- man/filter_time_period.Rd | 8 +- man/idle_time.Rd | 2 man/number_of_repetitions.Rd | 6 - man/number_of_selfloops.Rd | 12 +-- man/processing_time.Rd | 2 man/size_of_repetitions.Rd | 8 +- man/size_of_selfloops.Rd | 8 +- man/throughput_time.Rd | 3 46 files changed, 355 insertions(+), 231 deletions(-)
Title: A Path-Based BCD for Proximal Function of Latent Group Lasso
Description: Implementation of the block coordinate descent procedure for
solving the proximal function of latent group Lasso, highlighted by
decomposing a DAG into several non-overlapping path graphs, and getting
closed-form solution for each path graph. The procedure was introduced
as Algorithm 4 in Yan and Bien (2017) <doi:10.1214/17-STS622>
"Hierarchical Sparse Modeling: A Choice of Two Group Lasso Formulations", and the
closed-form solution for each path graph is solved in Algorithm 3 of
that paper.
Author: Xiaohan Yan [aut, cre], Jacob Bien [aut, cre]
Maintainer: Xiaohan Yan <xy257@cornell.edu>
Diff between hsm versions 0.1 dated 2016-06-13 and 0.2.0 dated 2018-03-22
DESCRIPTION | 19 +++--- MD5 | 38 +++++++------ NAMESPACE | 4 - R/hsm-package.R | 7 +- R/hsm.R | 32 ++++++----- R/hsm.path.R | 14 ++--- R/paths.R | 8 +- build/vignette.rds |binary inst/doc/hsm-vignette.R | 8 +- inst/doc/hsm-vignette.Rmd | 6 +- inst/doc/hsm-vignette.html | 125 +++++++++++++++++++++++++++------------------ man/ancestor.find.Rd | 5 - man/hsm-package.Rd | 14 ++--- man/hsm.Rd | 35 +++++++----- man/hsm.path.Rd | 15 ++--- man/lam.max.hsm.Rd | 3 - man/path.find.Rd | 3 - man/paths.Rd | 9 +-- src/hsm_init.c |only vignettes/hsm-vignette.Rmd | 6 +- vignettes/ref.bib |only 21 files changed, 191 insertions(+), 160 deletions(-)
Title: Quantified Risk Assessment Toolkit
Description: An open source risk analysis toolkit based on the OpenFAIR taxonomy
<https://www2.opengroup.org/ogsys/catalog/C13K> and risk assessment standard
<https://www2.opengroup.org/ogsys/catalog/C13G>. Empowers an organization to
perform a quantifiable, repeatable, and data-driven risk review.
Author: David Severski [aut, cre]
Maintainer: David Severski <davidski@deadheaven.com>
Diff between evaluator versions 0.2.0 dated 2018-03-13 and 0.2.1 dated 2018-03-22
DESCRIPTION | 7 ++++--- MD5 | 20 ++++++++++---------- NEWS.md | 11 +++++++++++ R/report.R | 34 +++++++++++++++++++++++++++++----- build/vignette.rds |binary inst/run_analysis.R | 23 +++++++++++++++++------ man/explore_scenarios.Rd | 7 ++++++- man/generate_report.Rd | 7 ++++++- man/openfair_example.Rd | 7 ++++++- man/risk_dashboard.Rd | 7 ++++++- tests/testthat/test-reports.R | 7 +++++++ 11 files changed, 102 insertions(+), 28 deletions(-)
Title: Simple Features for R
Description: Support for simple features, a standardized way to encode spatial vector data. Binds
to 'GDAL' for reading and writing data, to 'GEOS' for geometrical operations, and to 'PROJ' for projection
conversions and datum transformations.
Author: Edzer Pebesma [aut, cre] (<https://orcid.org/0000-0001-8049-7069>),
Roger Bivand [ctb] (<https://orcid.org/0000-0003-2392-6140>),
Ian Cook [ctb],
Tim Keitt [ctb],
Michael Sumner [ctb],
Robin Lovelace [ctb],
Hadley Wickham [ctb],
Jeroen Ooms [ctb] (<https://orcid.org/0000-0002-4035-0289>),
Etienne Racine [ctb]
Maintainer: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Diff between sf versions 0.6-0 dated 2018-01-06 and 0.6-1 dated 2018-03-22
sf-0.6-0/sf/man/Ops.sfg.Rd |only sf-0.6-0/sf/src/gdal.h |only sf-0.6-1/sf/DESCRIPTION | 27 +-- sf-0.6-1/sf/MD5 | 186 ++++++++++++------------ sf-0.6-1/sf/NAMESPACE | 20 ++ sf-0.6-1/sf/NEWS.md | 26 +++ sf-0.6-1/sf/R/RcppExports.R | 64 ++++++++ sf-0.6-1/sf/R/aggregate.R | 12 + sf-0.6-1/sf/R/agr.R | 2 sf-0.6-1/sf/R/arith.R | 51 +++++- sf-0.6-1/sf/R/cast_sfc.R | 3 sf-0.6-1/sf/R/crs.R | 58 ++++++- sf-0.6-1/sf/R/gdal_utils.R |only sf-0.6-1/sf/R/geom.R | 92 +++++++----- sf-0.6-1/sf/R/graticule.R | 1 sf-0.6-1/sf/R/init.R | 6 sf-0.6-1/sf/R/join.R | 1 sf-0.6-1/sf/R/plot.R | 179 ++++++++++++++++++----- sf-0.6-1/sf/R/read.R | 52 ++++-- sf-0.6-1/sf/R/sf.R | 40 +---- sf-0.6-1/sf/R/sfc.R | 39 ++++- sf-0.6-1/sf/R/sfg.R | 11 + sf-0.6-1/sf/R/sgbp.R | 2 sf-0.6-1/sf/R/sp.R | 27 ++- sf-0.6-1/sf/R/stars.R |only sf-0.6-1/sf/R/tidyverse.R | 58 ++++--- sf-0.6-1/sf/R/transform.R | 16 +- sf-0.6-1/sf/R/wkb.R | 8 + sf-0.6-1/sf/R/wkt.R | 7 sf-0.6-1/sf/configure | 4 sf-0.6-1/sf/configure.ac | 4 sf-0.6-1/sf/inst/doc/sf1.html | 64 +++----- sf-0.6-1/sf/inst/doc/sf2.html | 15 + sf-0.6-1/sf/inst/doc/sf3.Rmd | 2 sf-0.6-1/sf/inst/doc/sf3.html | 16 -- sf-0.6-1/sf/inst/doc/sf4.html | 6 sf-0.6-1/sf/inst/doc/sf5.html | 48 +++--- sf-0.6-1/sf/inst/doc/sf6.html | 4 sf-0.6-1/sf/inst/docker/base/Dockerfile | 2 sf-0.6-1/sf/inst/docker/devel/Dockerfile | 84 ++++++++--- sf-0.6-1/sf/inst/docker/gdal22/Dockerfile | 28 +-- sf-0.6-1/sf/inst/include/sf_RcppExports.h | 4 sf-0.6-1/sf/inst/nc |only sf-0.6-1/sf/inst/tif |only sf-0.6-1/sf/man/aggregate.sf.Rd | 8 - sf-0.6-1/sf/man/dplyr.Rd | 20 +- sf-0.6-1/sf/man/gdal.Rd |only sf-0.6-1/sf/man/gdal_utils.Rd |only sf-0.6-1/sf/man/geos_binary_ops.Rd | 6 sf-0.6-1/sf/man/geos_binary_pred.Rd | 8 - sf-0.6-1/sf/man/ops.Rd |only sf-0.6-1/sf/man/plot.Rd | 14 + sf-0.6-1/sf/man/sgbp.Rd | 2 sf-0.6-1/sf/man/st_as_sfc.Rd | 7 sf-0.6-1/sf/man/st_as_text.Rd | 6 sf-0.6-1/sf/man/st_drivers.Rd | 2 sf-0.6-1/sf/man/st_read.Rd | 10 - sf-0.6-1/sf/man/st_transform.Rd | 6 sf-0.6-1/sf/man/stars.Rd |only sf-0.6-1/sf/man/tibble.Rd | 7 sf-0.6-1/sf/src/Makevars.win | 27 +-- sf-0.6-1/sf/src/RcppExports.cpp | 229 ++++++++++++++++++++++++++++++ sf-0.6-1/sf/src/gdal.cpp | 58 +++++-- sf-0.6-1/sf/src/gdal_geom.cpp | 4 sf-0.6-1/sf/src/gdal_read.cpp | 3 sf-0.6-1/sf/src/gdal_sf_pkg.h |only sf-0.6-1/sf/src/gdal_utils.cpp |only sf-0.6-1/sf/src/gdal_write.cpp | 3 sf-0.6-1/sf/src/geos.cpp | 23 +-- sf-0.6-1/sf/src/proj.cpp | 61 +++++++ sf-0.6-1/sf/src/raster2sf.cpp |only sf-0.6-1/sf/src/stars.cpp |only sf-0.6-1/sf/tests/aggregate.Rout.save | 6 sf-0.6-1/sf/tests/crs.R | 6 sf-0.6-1/sf/tests/crs.Rout.save | 23 +-- sf-0.6-1/sf/tests/dist.R | 2 sf-0.6-1/sf/tests/dist.Rout.save | 4 sf-0.6-1/sf/tests/dplyr.R | 10 - sf-0.6-1/sf/tests/dplyr.Rout.save | 37 ++-- sf-0.6-1/sf/tests/gdal_geom.Rout.save | 6 sf-0.6-1/sf/tests/geos.R | 4 sf-0.6-1/sf/tests/geos.Rout.save | 10 + sf-0.6-1/sf/tests/read.R | 2 sf-0.6-1/sf/tests/read.Rout.save | 7 sf-0.6-1/sf/tests/roundtrip.Rout.save | 4 sf-0.6-1/sf/tests/sfc.R | 3 sf-0.6-1/sf/tests/sfc.Rout.save | 37 +++- sf-0.6-1/sf/tests/sfg.R | 8 + sf-0.6-1/sf/tests/sfg.Rout.save | 14 + sf-0.6-1/sf/tests/stars.R |only sf-0.6-1/sf/tests/stars.Rout.save |only sf-0.6-1/sf/tests/testthat.Rout.save | 6 sf-0.6-1/sf/tests/testthat/test_crs.R | 5 sf-0.6-1/sf/tests/testthat/test_gdal.R | 39 ++++- sf-0.6-1/sf/tests/testthat/test_geos.R | 37 +++- sf-0.6-1/sf/tests/testthat/test_postgis.R | 2 sf-0.6-1/sf/tests/testthat/test_sfg.R | 2 sf-0.6-1/sf/tests/testthat/test_write.R | 2 sf-0.6-1/sf/tests/units.Rout.save | 17 +- sf-0.6-1/sf/tests/zzz.Rout.save | 4 sf-0.6-1/sf/tools/winlibs.R | 8 - sf-0.6-1/sf/vignettes/sf3.Rmd | 2 102 files changed, 1498 insertions(+), 582 deletions(-)
Title: Visualization for Norwegian Health Quality Registries
Description: Assists for presentation and visualization of data from the Norwegian Health Quality Registries following the standardization based on the requirement specified by the National Service for Health Quality Registries. This requirement can be accessed from (<https://www.kvalitetsregistre.no/resultater-til-publisering-pa-nett>). Unfortunately the website is only available in Norwegian.
Author: Yusman Kamaleri [aut, cre]
Maintainer: Yusman Kamaleri <ybkamaleri@gmail.com>
Diff between rreg versions 0.1.2 dated 2018-01-18 and 0.2.1 dated 2018-03-22
DESCRIPTION | 8 ++++---- MD5 | 8 +++++--- NAMESPACE | 1 + R/regcom.R |only R/rreg.R | 11 ++++++++++- man/regcom.Rd |only 6 files changed, 20 insertions(+), 8 deletions(-)
Title: Multiple Comparisons Using Normal Approximation
Description: Multiple contrast tests and simultaneous confidence
intervals based on normal approximation. With implementations for
binomial proportions in a 2xk setting (risk difference and odds ratio),
poly-3-adjusted tumour rates, biodiversity indices (multinomial data)
and expected values under lognormal assumption. Approximative power
calculation for multiple contrast tests of binomial and Gaussian data.
Author: Frank Schaarschmidt [aut, cre],
Daniel Gerhard [aut],
Martin Sill [aut]
Maintainer: Frank Schaarschmidt <schaarschmidt@biostat.uni-hannover.de>
Diff between MCPAN versions 1.1-20 dated 2016-01-12 and 1.1-21 dated 2018-03-22
DESCRIPTION | 12 +++++++----- MD5 | 10 +++++----- R/mosaicShannonSimpson.R | 2 +- R/plotCI.R | 6 ++---- man/MCPAN-package.Rd | 4 ++-- man/powerbinom.Rd | 2 +- 6 files changed, 18 insertions(+), 18 deletions(-)
Title: Supplementary Item Response Theory Models
Description: Supplementary functions for item response models aiming
to complement existing R packages. The functionality includes among others
multidimensional compensatory and noncompensatory IRT models
(Reckase, 2009, <doi:10.1007/978-0-387-89976-3>),
MCMC for hierarchical IRT models and testlet models
(Fox, 2010, <doi:10.1007/978-1-4419-0742-4>),
NOHARM (Fraser & McDonald, 1982, <doi:10.1207/s15327906mbr2302_9>),
Rasch copula model (Braeken, 2011, <doi:10.1007/s11336-010-9190-4>;
Schroeders, Robitzsch & Schipolowski, 2014, <doi:10.1111/jedm.12054>),
faceted and hierarchical rater models (DeCarlo, Kim & Johnson, 2011,
<doi:10.1111/j.1745-3984.2011.00143.x>),
ordinal IRT model (ISOP; Scheiblechner, 1995, <doi:10.1007/BF02301417>),
DETECT statistic (Stout et al., 1996, <doi:10.1177/014662169602000403>),
local structural equation modeling (LSEM; Hildebrandt et al., 2016,
<doi:10.1080/00273171.2016.1142856>).
Author: Alexander Robitzsch [aut,cre]
Maintainer: Alexander Robitzsch <robitzsch@ipn.uni-kiel.de>
Diff between sirt versions 2.5-45 dated 2018-03-13 and 2.6-9 dated 2018-03-22
sirt-2.5-45/sirt/R/tam2mirt.aux.R |only sirt-2.6-9/sirt/DESCRIPTION | 8 - sirt-2.6-9/sirt/MD5 | 21 +-- sirt-2.6-9/sirt/R/lavaan2mirt.R | 168 +++++++++++++----------------- sirt-2.6-9/sirt/R/rasch.mml2.R | 4 sirt-2.6-9/sirt/R/tam2mirt.R | 40 ++++--- sirt-2.6-9/sirt/R/tam2mirt_fix.R |only sirt-2.6-9/sirt/R/tam2mirt_freed.R |only sirt-2.6-9/sirt/inst/NEWS | 18 ++- sirt-2.6-9/sirt/man/isop.Rd | 4 sirt-2.6-9/sirt/man/isop.test.Rd | 4 sirt-2.6-9/sirt/src/RcppExports.cpp | 4 sirt-2.6-9/sirt/src/rm_proc_data_rcpp.cpp | 8 - 13 files changed, 144 insertions(+), 135 deletions(-)
Title: Measures for Comparing Clusters
Description: Given a set of data points, a clustering is defined as a disjoint partition
where each pair of sets in a partition has no overlapping elements.
This package provides 25 methods that play a role somewhat similar to
distance or metric that measures similarity of two clusterings - or partitions.
For a more detailed description, see Meila, M. (2005) <doi:10.1145/1102351.1102424>.
Author: Kisung You [aut, cre]
Maintainer: Kisung You <kyou@nd.edu>
Diff between mclustcomp versions 0.2.0 dated 2017-10-31 and 0.3.0 dated 2018-03-22
mclustcomp-0.2.0/mclustcomp/man/package-mclustcomp.Rd |only mclustcomp-0.3.0/mclustcomp/DESCRIPTION | 11 mclustcomp-0.3.0/mclustcomp/MD5 | 19 - mclustcomp-0.3.0/mclustcomp/NAMESPACE | 1 mclustcomp-0.3.0/mclustcomp/R/auxiliary.R | 266 ------------------ mclustcomp-0.3.0/mclustcomp/R/cat1_CountingPairs.R |only mclustcomp-0.3.0/mclustcomp/R/cat2_SetOverlap.R |only mclustcomp-0.3.0/mclustcomp/R/cat3_InfoTheory.R |only mclustcomp-0.3.0/mclustcomp/R/mclustcomp.R | 260 ++++++++++------- mclustcomp-0.3.0/mclustcomp/R/package-mclustcomp.R | 4 mclustcomp-0.3.0/mclustcomp/build |only mclustcomp-0.3.0/mclustcomp/inst |only mclustcomp-0.3.0/mclustcomp/man/mclustcomp-package.Rd |only mclustcomp-0.3.0/mclustcomp/man/mclustcomp.Rd | 135 +++++---- 14 files changed, 275 insertions(+), 421 deletions(-)
Title: Data Analysis Functions for 'SBpipe' Package
Description: Provides an API for analysing repetitive parameter estimations and simulations of
mathematical models. Examples of mathematical models are Ordinary Differential equations (ODEs)
or Stochastic Differential Equations (SDEs) models. Among the analyses for parameter
estimation 'sbpiper' calculates statistics and generates plots for parameter density, PCA of the best
fits, parameter profile likelihood estimations (PLEs), and 2D parameter PLEs. These results can
be generated using all or a subset of the best computed parameter sets. Among the analyses
for model simulation 'sbpiper' calculates statistics and generates plots for deterministic
and stochastic time courses via cartesian and heatmap plots. Plots for the scan of one or two model
parameters can also be generated. This package is primarily used by the software 'SBpipe'.
Citation: Dalle Pezze P, Le Novère N. SBpipe: a collection of pipelines for automating
repetitive simulation and analysis tasks. BMC Systems Biology. 2017;11:46. <doi:10.1186/s12918-017-0423-3>.
Author: Piero Dalle Pezze [aut, cre, cph]
(<https://orcid.org/0000-0003-1695-6763>),
Nicolas Le Novère [cph] (<https://orcid.org/0000-0002-6309-7327>)
Maintainer: Piero Dalle Pezze <piero.dallepezze@gmail.com>
Diff between sbpiper versions 1.5.0 dated 2018-03-02 and 1.6.0 dated 2018-03-22
sbpiper-1.5.0/sbpiper/man/compute_descriptive_statistics.Rd |only sbpiper-1.5.0/sbpiper/man/get_column_names_statistics.Rd |only sbpiper-1.5.0/sbpiper/man/get_stats.Rd |only sbpiper-1.6.0/sbpiper/DESCRIPTION | 21 sbpiper-1.6.0/sbpiper/MD5 | 86 +- sbpiper-1.6.0/sbpiper/NAMESPACE | 9 sbpiper-1.6.0/sbpiper/R/sbpiper.r | 7 sbpiper-1.6.0/sbpiper/R/sbpiper_ggplot2_themes.r | 20 sbpiper-1.6.0/sbpiper/R/sbpiper_pe.r | 374 +++++++-- sbpiper-1.6.0/sbpiper/R/sbpiper_plots.r | 10 sbpiper-1.6.0/sbpiper/R/sbpiper_ps1.r | 40 sbpiper-1.6.0/sbpiper/R/sbpiper_ps2.r | 24 sbpiper-1.6.0/sbpiper/R/sbpiper_sim.r | 447 ++++------- sbpiper-1.6.0/sbpiper/README.md | 4 sbpiper-1.6.0/sbpiper/man/combine_param_best_fits_stats.Rd |only sbpiper-1.6.0/sbpiper/man/combine_param_ple_stats.Rd | 4 sbpiper-1.6.0/sbpiper/man/gen_stats_table.Rd | 28 sbpiper-1.6.0/sbpiper/man/insulin_receptor_1.Rd | 4 sbpiper-1.6.0/sbpiper/man/insulin_receptor_2.Rd | 4 sbpiper-1.6.0/sbpiper/man/insulin_receptor_3.Rd | 4 sbpiper-1.6.0/sbpiper/man/insulin_receptor_IR_beta_pY1146.Rd | 82 +- sbpiper-1.6.0/sbpiper/man/insulin_receptor_all_fits.Rd | 8 sbpiper-1.6.0/sbpiper/man/insulin_receptor_best_fits.Rd | 10 sbpiper-1.6.0/sbpiper/man/insulin_receptor_exp_dataset.Rd | 8 sbpiper-1.6.0/sbpiper/man/insulin_receptor_ps1_l0.Rd | 10 sbpiper-1.6.0/sbpiper/man/insulin_receptor_ps1_l1.Rd | 10 sbpiper-1.6.0/sbpiper/man/insulin_receptor_ps1_l11.Rd | 10 sbpiper-1.6.0/sbpiper/man/insulin_receptor_ps1_l13.Rd | 10 sbpiper-1.6.0/sbpiper/man/insulin_receptor_ps1_l14.Rd | 10 sbpiper-1.6.0/sbpiper/man/insulin_receptor_ps1_l16.Rd | 10 sbpiper-1.6.0/sbpiper/man/insulin_receptor_ps1_l3.Rd | 10 sbpiper-1.6.0/sbpiper/man/insulin_receptor_ps1_l4.Rd | 10 sbpiper-1.6.0/sbpiper/man/insulin_receptor_ps1_l6.Rd | 10 sbpiper-1.6.0/sbpiper/man/insulin_receptor_ps1_l8.Rd | 10 sbpiper-1.6.0/sbpiper/man/insulin_receptor_ps1_l9.Rd | 10 sbpiper-1.6.0/sbpiper/man/insulin_receptor_ps2_tp2.Rd | 12 sbpiper-1.6.0/sbpiper/man/kurtosis.Rd |only sbpiper-1.6.0/sbpiper/man/parameter_pca_analysis.Rd |only sbpiper-1.6.0/sbpiper/man/pca_theme.Rd |only sbpiper-1.6.0/sbpiper/man/pe_ds_preproc.Rd | 4 sbpiper-1.6.0/sbpiper/man/plot_parameter_density.Rd | 2 sbpiper-1.6.0/sbpiper/man/plot_raw_dataset.Rd | 4 sbpiper-1.6.0/sbpiper/man/plot_sampled_2d_ple.Rd | 2 sbpiper-1.6.0/sbpiper/man/replace_colnames.Rd | 4 sbpiper-1.6.0/sbpiper/man/sbpiper-package.Rd | 15 sbpiper-1.6.0/sbpiper/man/sbpiper_pe.Rd | 8 sbpiper-1.6.0/sbpiper/man/skewness.Rd |only sbpiper-1.6.0/sbpiper/man/summarise_data.Rd | 2 48 files changed, 748 insertions(+), 609 deletions(-)
Title: Efficient and Publishing-Oriented Workflow for Psychological
Science
Description: Toolbox for psychologists, neuropsychologists and neuroscientists.
It implements methods to create report-ready outputs for many statistical models,
as well as various convenient statistical functions used in psychological science,
such as correlation matrices and standardization.
Author: Dominique Makowski [aut, cre, cph],
Viliam Simko [ctb],
Sasha Epskamp [rev] (Sasha reviewed the package for JOSS, see
https://github.com/openjournals/joss-reviews/issues/470)
Maintainer: Dominique Makowski <dom.makowski@gmail.com>
Diff between psycho versions 0.1.0 dated 2018-02-05 and 0.1.4 dated 2018-03-22
DESCRIPTION | 26 +- LICENSE | 2 MD5 | 57 +++-- NAMESPACE | 12 + NEWS.md | 15 + R/analyze.glmerMod.R | 6 R/analyze.merMod.R | 1 R/analyze.merModLmerTest.R | 6 R/analyze.stanreg.R | 61 ++++- R/correlation.R | 2 R/crawford.test.R |only R/dprime.R |only R/get_predicted.R |only R/get_predicted.stanreg.R |only R/mellenbergh.test.R |only R/n_factors.R | 17 - R/odds_to_probs.R |only README.md | 17 + build/vignette.rds |binary inst/CITATION | 21 +- inst/doc/overview.R | 98 ++++++++- inst/doc/overview.Rmd | 180 ++++++++++++++++- inst/doc/overview.html | 290 ++++++++++++++++++++++++++-- man/analyze.stanreg.Rd | 2 man/correlation.Rd | 2 man/crawford.test.Rd |only man/dprime.Rd |only man/get_predicted.Rd |only man/get_predicted.stanreg.Rd |only man/mellenbergh.test.Rd |only man/odds_to_probs.Rd |only tests/testthat/test-analyze.stanreg.R | 1 tests/testthat/test-crawford.test.R |only tests/testthat/test-dprime.R |only tests/testthat/test-get_predicted.stanreg.R |only tests/testthat/test-mellenbergh.test.R |only tests/testthat/test-odds_to_probs.R |only vignettes/overview.Rmd | 180 ++++++++++++++++- 38 files changed, 890 insertions(+), 106 deletions(-)
Title: Pattern Matching
Description: Implements type constructions and pattern matching.
Using this package, you can specify a type of object and write functions
that matches against the structure of objects of such types to program
data structure transformations more succinctly.
Author: Thomas Mailund <mailund@birc.au.dk>
Maintainer: Thomas Mailund <mailund@birc.au.dk>
Diff between pmatch versions 0.1.2 dated 2018-02-28 and 0.1.3 dated 2018-03-22
pmatch-0.1.2/pmatch/build |only pmatch-0.1.2/pmatch/inst/doc |only pmatch-0.1.2/pmatch/tests/testthat/test-tailr-transforms.R |only pmatch-0.1.2/pmatch/vignettes |only pmatch-0.1.3/pmatch/DESCRIPTION | 13 - pmatch-0.1.3/pmatch/MD5 | 49 ++-- pmatch-0.1.3/pmatch/NAMESPACE | 3 pmatch-0.1.3/pmatch/NEWS.md | 10 pmatch-0.1.3/pmatch/R/bind.R |only pmatch-0.1.3/pmatch/R/cases.R | 92 ++++---- pmatch-0.1.3/pmatch/R/constructors.R | 92 ++++---- pmatch-0.1.3/pmatch/R/transforms.R |only pmatch-0.1.3/pmatch/README.md | 146 ++++++++++++- pmatch-0.1.3/pmatch/man/bind.Rd |only pmatch-0.1.3/pmatch/man/cases.Rd | 14 - pmatch-0.1.3/pmatch/man/cases_expr.Rd | 8 pmatch-0.1.3/pmatch/man/colon-equals.Rd | 47 +--- pmatch-0.1.3/pmatch/man/copy_env.Rd |only pmatch-0.1.3/pmatch/man/deparse_construction.Rd | 6 pmatch-0.1.3/pmatch/man/make_match_expr.Rd | 15 - pmatch-0.1.3/pmatch/man/process_arg.Rd | 3 pmatch-0.1.3/pmatch/man/process_arguments.Rd | 6 pmatch-0.1.3/pmatch/man/subset-.pmatch_bind.Rd |only pmatch-0.1.3/pmatch/man/test_pattern.Rd | 16 - pmatch-0.1.3/pmatch/man/test_pattern_rec.Rd | 4 pmatch-0.1.3/pmatch/man/transform_cases_call.Rd |only pmatch-0.1.3/pmatch/man/transform_cases_function.Rd |only pmatch-0.1.3/pmatch/man/transform_cases_function_rec.Rd |only pmatch-0.1.3/pmatch/tests/testthat/test-bind.R |only pmatch-0.1.3/pmatch/tests/testthat/test-transforms.R |only pmatch-0.1.3/pmatch/tests/testthat/test_cases.R | 56 ++++ 31 files changed, 404 insertions(+), 176 deletions(-)
Title: NHANES Data Retrieval
Description: Utility to retrieve data from the National Health and Nutrition
Examination Survey (NHANES) website <https://www.cdc.gov/nchs/nhanes/index.htm>.
Author: Christopher J. Endres
Maintainer: Christopher J. Endres <cjendres1@gmail.com>
Diff between nhanesA versions 0.6.4.3.3 dated 2016-12-13 and 0.6.4.4 dated 2018-03-22
DESCRIPTION | 20 ++++++++--------- MD5 | 32 ++++++++++++++-------------- R/nhanes.R | 43 ++++++++++++++++++++++---------------- build/vignette.rds |binary inst/doc/Introducing_nhanesA.Rmd | 11 +++++++-- inst/doc/Introducing_nhanesA.html | 41 +++++++++++++++++++++--------------- man/browseNHANES.Rd | 1 man/nhanes.Rd | 5 +--- man/nhanesAttr.Rd | 1 man/nhanesDXA.Rd | 1 man/nhanesSearch.Rd | 1 man/nhanesSearchTableNames.Rd | 1 man/nhanesSearchVarName.Rd | 1 man/nhanesTableVars.Rd | 3 -- man/nhanesTables.Rd | 3 -- man/nhanesTranslate.Rd | 1 vignettes/Introducing_nhanesA.Rmd | 11 +++++++-- 17 files changed, 95 insertions(+), 81 deletions(-)
Title: Fast Imputation of Missing Values
Description: Alternative implementation of the beautiful 'MissForest' algorithm used to impute mixed-type data sets by chaining tree ensembles, introduced by Stekhoven, D.J. and Buehlmann, P. (2012) <doi:10.1093/bioinformatics/btr597>. Under the hood, it uses the lightning fast random jungle package 'ranger'. Between the iterative model fitting, we offer the option of using predictive mean matching. This firstly avoids imputation with values not already present in the original data (like a value 0.3334 in 0-1 coded variable). Secondly, predictive mean matching tries to raise the variance in the resulting conditional distributions to a realistic level. This would allow e.g. to do multiple imputation when repeating the call to missRanger().
Author: Michael Mayer [aut, cre, cph]
Maintainer: Michael Mayer <mayermichael79@gmail.com>
Diff between missRanger versions 1.0.0 dated 2017-08-25 and 1.0.1 dated 2018-03-22
DESCRIPTION | 12 ++++++------ MD5 | 18 +++++++++--------- NEWS.md | 6 ++++-- R/imputeUnivariate.R | 3 ++- R/missRanger.R | 30 ++++++++++++++++++------------ R/pmm.R | 2 +- README.md | 10 ++++++++-- man/imputeUnivariate.Rd | 1 + man/missRanger.Rd | 22 ++++++++++++---------- man/pmm.Rd | 2 +- 10 files changed, 62 insertions(+), 44 deletions(-)
Title: Solving Complex Game Problems using Gaussian Processes
Description: Sequential strategies for finding a game equilibrium are proposed in a black-box setting (expensive pay-off evaluations, no derivatives). The algorithm handles noiseless or noisy evaluations. Two acquisition functions are available. Graphical outputs can be generated automatically.
Author: Victor Picheny, Mickael Binois
Maintainer: Victor Picheny <victor.picheny@inra.fr>
Diff between GPGame versions 1.0.0 dated 2017-06-10 and 1.1.0 dated 2018-03-22
GPGame-1.0.0/GPGame/src/PSNE2_Rcpp.cpp |only GPGame-1.0.0/GPGame/src/init.c |only GPGame-1.1.0/GPGame/DESCRIPTION | 15 GPGame-1.1.0/GPGame/MD5 | 52 - GPGame-1.1.0/GPGame/NAMESPACE | 13 GPGame-1.1.0/GPGame/NEWS |only GPGame-1.1.0/GPGame/R/GPGame-package.R | 7 GPGame-1.1.0/GPGame/R/RcppExports.R | 74 + GPGame-1.1.0/GPGame/R/crit_SUR.R | 26 GPGame-1.1.0/GPGame/R/domination.R |only GPGame-1.1.0/GPGame/R/filter_for_Game.R | 76 + GPGame-1.1.0/GPGame/R/generate_integ_pts.R | 43 GPGame-1.1.0/GPGame/R/getEquilibrium.R | 125 ++ GPGame-1.1.0/GPGame/R/plotGame.R | 19 GPGame-1.1.0/GPGame/R/prob.of.non.domination.R | 117 +- GPGame-1.1.0/GPGame/R/solve_game.R | 1027 +++++++++++----------- GPGame-1.1.0/GPGame/man/GPGame.Rd | 13 GPGame-1.1.0/GPGame/man/crit_PNash.Rd | 1 GPGame-1.1.0/GPGame/man/crit_SUR_Eq.Rd | 11 GPGame-1.1.0/GPGame/man/filter_for_Game.Rd | 9 GPGame-1.1.0/GPGame/man/generate_integ_pts.Rd | 16 GPGame-1.1.0/GPGame/man/getEquilibrium.Rd | 13 GPGame-1.1.0/GPGame/man/nonDom.Rd |only GPGame-1.1.0/GPGame/man/plotGame.Rd | 9 GPGame-1.1.0/GPGame/man/plotGameGrid.Rd | 7 GPGame-1.1.0/GPGame/man/solve_game.Rd | 89 + GPGame-1.1.0/GPGame/src/PSNE_sparseMat.cpp | 186 --- GPGame-1.1.0/GPGame/src/PSNE_sparseMat_matrix.cpp | 4 GPGame-1.1.0/GPGame/src/RcppExports.cpp | 79 + GPGame-1.1.0/GPGame/src/domination.cpp |only 30 files changed, 1119 insertions(+), 912 deletions(-)
Title: Algorithms for Finding Fixed Point Vectors of Functions
Description: For functions that take and return vectors (or scalars), this package provides 8 algorithms for finding fixed point vectors (vectors for which the inputs and outputs to the function are the same vector). These algorithms include Anderson (1965) acceleration <doi:10.1145/321296.321305>, epsilon extrapolation methods (Wynn 1962 <doi:10.2307/2004051>) and minimal polynomial methods (Cabay and Jackson 1976 <doi:10.1137/0713060>).
Author: Stuart Baumann & Margaryta Klymak
Maintainer: Stuart Baumann <Stuart@StuartBaumann.com>
Diff between FixedPoint versions 0.2 dated 2018-02-03 and 0.3 dated 2018-03-22
DESCRIPTION | 6 MD5 | 43 R/Figures.R | 33 R/MainFunctions.R | 268 +- inst/doc/FixedPoint.R | 70 inst/doc/FixedPoint.Rmd | 189 + inst/doc/FixedPoint.pdf | 2761 ++++++++++++++--------------- man/ChangePerIterate.Rd | 3 man/EpsilonExtrapolation.Rd | 7 man/FixedPoint.Rd | 105 - man/FixedPointNewInput.Rd | 30 man/PolynomialExtrapolation.Rd | 13 man/PutTogetherIteratesWithoutJumps.Rd | 10 tests/testthat/test_CubicRoot.R | 2 tests/testthat/test_DiffussionProcess.R | 4 tests/testthat/test_LinearRoot.R | 4 tests/testthat/test_Perceptron.R |only tests/testthat/test_PerpetualPut.R | 14 tests/testthat/test_ValueFunctionProblem.R | 16 vignettes/Bibliography.bib | 107 + vignettes/EpsilonTriangle.png |binary vignettes/FixedPoint.Rmd | 189 + vignettes/PerformanceTable.png |binary 23 files changed, 2179 insertions(+), 1695 deletions(-)
Title: Ensemble Model Output Statistics
Description: Ensemble Model Output Statistics to create probabilistic
forecasts from ensemble forecasts and weather observations.
Author: RA Yuen, Sandor Baran, Chris Fraley, Tilmann Gneiting, Sebastian Lerch, Michael Scheuerer, Thordis Thorarinsdottir
Maintainer: Sandor Baran <baran.sandor@inf.unideb.hu>
Diff between ensembleMOS versions 0.8.1 dated 2017-11-17 and 0.8.2 dated 2018-03-22
DESCRIPTION | 8 ++++---- MD5 | 18 +++++++++--------- R/fitMOScsg0.R | 10 +++++----- R/fitMOSgev0.R | 10 +++++----- R/fitMOSlognormal.R | 10 +++++----- R/fitMOSnormal.R | 10 +++++----- R/fitMOStruncnormal.R | 10 +++++----- man/controlMOScsg0.Rd | 2 +- man/ensembleMOScsg0.Rd | 2 +- man/fitMOScsg0.Rd | 2 +- 10 files changed, 41 insertions(+), 41 deletions(-)
Title: General Package for Meta-Analysis
Description: User-friendly general package providing standard methods for meta-analysis and supporting Schwarzer, Carpenter, and Rücker <DOI:10.1007/978-3-319-21416-0>, "Meta-Analysis with R" (2015):
- fixed effect and random effects meta-analysis;
- several plots (forest, funnel, Galbraith / radial, L'Abbe, Baujat, bubble);
- statistical tests and trim-and-fill method to evaluate bias in meta-analysis;
- import data from 'RevMan 5';
- prediction interval, Hartung-Knapp and Paule-Mandel method for random effects model;
- cumulative meta-analysis and leave-one-out meta-analysis;
- meta-regression (if R package 'metafor' is installed);
- generalised linear mixed models (if R packages 'metafor', 'lme4', 'numDeriv', and 'BiasedUrn' are installed);
- produce forest plot summarising several (subgroup) meta-analyses.
Author: Guido Schwarzer [cre, aut]
Maintainer: Guido Schwarzer <sc@imbi.uni-freiburg.de>
Diff between meta versions 4.9-0 dated 2017-12-05 and 4.9-1 dated 2018-03-22
DESCRIPTION | 8 +-- MD5 | 65 ++++++++++++++------------- NEWS | 80 +++++++++++++++++++++++++++++++++- R/asin2ir.R | 5 +- R/bylevs.R | 2 R/catmeth.R | 17 ++++--- R/chkchar.R | 28 +++++++++-- R/forest.meta.R | 22 +++++---- R/funnel.meta.R | 85 ++++++++++++++++++++++++++++++------ R/is.untransformed.R |only R/metabin.R | 49 ++++++++++++++++---- R/metacor.R | 8 +-- R/metagen.R | 7 ++ R/metainc.R | 51 +++++++++++++++++---- R/metamean.R | 8 +-- R/metaprop.R | 46 +++++++++++++------ R/metarate.R | 45 +++++++++++++------ R/metareg.R | 115 +++++++++++++++++++++++++++++++++++-------------- R/print.meta.R | 75 +++++++++++++++++++++++-------- R/print.summary.meta.R | 41 ++++++++--------- R/subgroup.R | 81 +++++++++++++++++++++------------- R/summary.meta.R | 13 +++-- R/update.meta.R | 9 +-- R/xlab.R | 18 ++++++- man/forest.Rd | 27 +++++++---- man/funnel.Rd | 16 +++++- man/metabin.Rd | 4 + man/metagen.Rd | 33 +++++++------- man/metainc.Rd | 10 ++-- man/metaprop.Rd | 2 man/metarate.Rd | 4 - man/print.meta.Rd | 29 ++++++++---- man/trimfill.Rd | 11 ++-- man/update.meta.Rd | 11 ++-- 34 files changed, 724 insertions(+), 301 deletions(-)
Title: Group Testing Procedures for Signal Detection and
Goodness-of-Fit
Description: It provides cumulative distribution function (CDF),
quantile, p-value, statistical power calculator and random number generator
for a collection of group-testing procedures, including the Higher Criticism
tests, the one-sided Kolmogorov-Smirnov tests, the one-sided Berk-Jones tests,
the one-sided phi-divergence tests, etc. The input are a group of p-values.
The null hypothesis is that they are i.i.d. Uniform(0,1). In the context of
signal detection, the null hypothesis means no signals. In the context of the
goodness-of-fit testing, which contrasts a group of i.i.d. random variables to
a given continuous distribution, the input p-values can be obtained by the CDF
transformation. The null hypothesis means that these random variables follow the
given distribution. For reference, see Hong Zhang, Jiashun Jin and Zheyang Wu.
"Distributions and Statistical Power of Optimal Signal-Detection Methods In Finite Cases",
submitted.
Author: Hong Zhang and Zheyang Wu
Maintainer: Hong Zhang <hzhang@wpi.edu>
Diff between SetTest versions 0.1.0 dated 2017-02-11 and 0.2.0 dated 2018-03-22
SetTest-0.1.0/SetTest/R/rbj.R |only SetTest-0.1.0/SetTest/R/rhc.R |only SetTest-0.1.0/SetTest/R/rphi.R |only SetTest-0.1.0/SetTest/man/rbj.Rd |only SetTest-0.1.0/SetTest/man/rhc.Rd |only SetTest-0.1.0/SetTest/man/rphi.Rd |only SetTest-0.2.0/SetTest/DESCRIPTION | 12 - SetTest-0.2.0/SetTest/MD5 | 78 ++++---- SetTest-0.2.0/SetTest/NAMESPACE | 10 - SetTest-0.2.0/SetTest/R/internal.R | 254 ++++++++++++++++++++++++++++- SetTest-0.2.0/SetTest/R/pbj.R | 17 + SetTest-0.2.0/SetTest/R/phc.R | 21 +- SetTest-0.2.0/SetTest/R/power.bj.R | 11 - SetTest-0.2.0/SetTest/R/power.hc.R | 11 - SetTest-0.2.0/SetTest/R/power.phi.R | 13 - SetTest-0.2.0/SetTest/R/pphi.R | 99 +++++------ SetTest-0.2.0/SetTest/R/pphi.omni.R |only SetTest-0.2.0/SetTest/R/qbj.R | 15 - SetTest-0.2.0/SetTest/R/qhc.R | 16 + SetTest-0.2.0/SetTest/R/qphi.R | 29 +-- SetTest-0.2.0/SetTest/R/stat.bj.R | 14 - SetTest-0.2.0/SetTest/R/stat.hc.R | 14 - SetTest-0.2.0/SetTest/R/stat.phi.R | 29 +-- SetTest-0.2.0/SetTest/R/stat.phi.omni.R |only SetTest-0.2.0/SetTest/R/test.bj.R | 20 +- SetTest-0.2.0/SetTest/R/test.hc.R | 25 +- SetTest-0.2.0/SetTest/R/test.phi.R | 25 +- SetTest-0.2.0/SetTest/R/test.phi.omni.R |only SetTest-0.2.0/SetTest/man/pbj.Rd | 18 +- SetTest-0.2.0/SetTest/man/phc.Rd | 20 +- SetTest-0.2.0/SetTest/man/power.bj.Rd | 12 - SetTest-0.2.0/SetTest/man/power.hc.Rd | 12 - SetTest-0.2.0/SetTest/man/power.phi.Rd | 11 - SetTest-0.2.0/SetTest/man/pphi.Rd | 36 +--- SetTest-0.2.0/SetTest/man/pphi.omni.Rd |only SetTest-0.2.0/SetTest/man/qbj.Rd | 16 + SetTest-0.2.0/SetTest/man/qhc.Rd | 16 + SetTest-0.2.0/SetTest/man/qphi.Rd | 18 +- SetTest-0.2.0/SetTest/man/stat.bj.Rd | 14 - SetTest-0.2.0/SetTest/man/stat.hc.Rd | 14 - SetTest-0.2.0/SetTest/man/stat.phi.Rd | 14 - SetTest-0.2.0/SetTest/man/stat.phi.omni.Rd |only SetTest-0.2.0/SetTest/man/test.bj.Rd | 20 +- SetTest-0.2.0/SetTest/man/test.hc.Rd | 24 +- SetTest-0.2.0/SetTest/man/test.phi.Rd | 24 +- SetTest-0.2.0/SetTest/man/test.phi.omni.Rd |only 46 files changed, 618 insertions(+), 364 deletions(-)
Title: Continuous Time Distance-Based and Network-Based Individual
Level Models for Epidemics
Description: Provides tools for simulating from continuous-time individual level models of disease transmission, and carrying out infectious disease data analyses with the same models. The epidemic models considered are distance-based and contact network-based models within Susceptible-Infectious-Removed (SIR) or Susceptible-Infectious-Notified-Removed (SINR) compartmental frameworks.
Author: Waleed Almutiry, Vineetha Warriyar K. V. and Rob Deardon
Maintainer: Waleed Almutiry <walmutir@uoguelph.ca>
Diff between EpiILMCT versions 1.0 dated 2017-12-07 and 1.1 dated 2018-03-22
DESCRIPTION | 11 MD5 | 41 NAMESPACE | 28 R/datgen.r | 41 R/epictmcmc.r | 3463 +++++++++++++++++++++++++++-------------------- R/epiplot.r | 291 ++- data/SpatialData.RData |binary data/tswv.RData |binary man/SpatialData.Rd | 11 man/contactnet.Rd | 2 man/datagen.Rd | 6 man/epictmcmc.Rd | 82 - man/epiplot.Rd | 15 man/plot.epictmcmc.Rd |only man/print.epictmcmc.Rd |only man/summary.epictmcmc.Rd |only src/datsim.f95 | 569 ++++--- src/datsimsinr.f95 | 728 +++++---- src/freginf.c | 58 src/loglikeoisinr.f95 | 964 ++++++------- src/loglikepi.f95 | 632 ++++---- src/mcmcsinr.f95 | 3098 ++++++++++++++++++++++-------------------- src/mcmcsir.f95 | 1373 +++++++++--------- 23 files changed, 6179 insertions(+), 5234 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-03-07 0.6.0
2018-01-09 0.3.2
Title: Analyze Healthcare Social Media Data from the 'Symplur' API
Description: Analyze data from the 'Healthcare Social Graph' via access to the 'Symplur' API.
The 'Healthcare Social Graph' contains billions of healthcare social media data points. Hundreds of published journal articles have leveraged data from the 'Healthcare Social Graph'.
About the 'Symplur' API: <https://api.symplur.com/v1/docs/>.
About 'Symplur' research: <https://www.symplur.com/healthcare-social-media-research/>.
Credit to Professor Larry Chu, MD at Stanford University School of Medicine for the idea of the 'SympluR' package.
Author: Audun Utengen
Maintainer: Audun Utengen <audun@symplur.com>
Diff between SympluR versions 0.2.0 dated 2018-03-13 and 0.3.0 dated 2018-03-22
DESCRIPTION | 6 +++--- MD5 | 13 ++++++++----- NAMESPACE | 2 ++ NEWS.md | 16 ++++++++++------ R/symplurContentRetweets.R | 3 +++ R/symplurPeopleInfluencers.R |only README.md | 2 ++ man/symplurPeopleInfluencers.Rd |only man/symplurPeopleInfluencersTable.Rd |only 9 files changed, 28 insertions(+), 14 deletions(-)