Title: Partial Orders in Socio-Economics
Description: Implements basic partial order tools for multidimensional poverty evaluation with ordinal variables. Its main goal is to provide socio-economic scholars with an integrated set of elementary functions for multidimensional poverty evaluation, based on ordinal information. The package is organized in four main parts. The first two comprise functions for data management and basic partial order analysis; the third and the fourth are devoted to evaluation and implement both the poset-based approach and a more classical counting procedure. References, Fattore M. (2016) <doi:10.1007/s11205-015-1059-6> Fattore M., Arcagni A. (2016) <doi:10.1007/s11205-016-1501-4> Arcagni A. (2017) <doi:10.1007/978-3-319-45421-4_19>.
Author: Alberto Arcagni [aut, cre],
Marco Fattore [ctb]
Maintainer: Alberto Arcagni <alberto.arcagni@unimib.it>
Diff between parsec versions 1.1.2 dated 2016-05-05 and 1.2.0 dated 2018-03-29
DESCRIPTION | 15 +++++---- MD5 | 67 ++++++++++++++++++++++++++++++-------------- NAMESPACE | 24 +++++++++++++-- R/FOD.R |only R/FOD.wprof.R |only R/average_ranks.R |only R/average_ranks.cover.R |only R/average_ranks.incidence.R |only R/equivalences.R |only R/equivalences.cover.R |only R/equivalences.incidence.R |only R/evaluation.R | 4 +- R/idn.R | 6 +-- R/merge.wprof.R |only R/parsec2igraph.R |only R/parsec2igraph.cover.R |only R/parsec2igraph.incidence.R |only R/plot.average_ranks.R |only R/plot.cover.R | 4 +- R/plot.incidence.R | 4 +- R/plot.parsec.R | 3 + R/plot.rank_stability.R |only R/plot.wprof.R | 4 +- R/pop2prof.R | 53 ++++++++++++---------------------- R/rank_stability.FODposet.R |only R/rank_stability.R |only R/summary.parsec.R | 11 +++---- R/vertices.R | 4 +- man/AF2threshold.Rd | 4 +- man/FOD.Rd |only man/average_ranks.Rd |only man/equivalences.Rd |only man/evaluation.Rd | 8 +++-- man/idn.Rd | 5 +-- man/latex.Rd | 2 - man/merge.wprof.Rd |only man/parsec-package.Rd | 4 +- man/parsec2igraph.Rd |only man/plot.average_ranks.Rd |only man/plot.cover.Rd | 9 +++-- man/plot.parsec.Rd | 4 ++ man/plot.rank_stability.Rd |only man/pop2prof.Rd | 5 ++- man/rank_stability.Rd |only man/summary.parsec.Rd | 2 - man/vertices.Rd | 5 ++- src/parsec_init.c |only 47 files changed, 148 insertions(+), 99 deletions(-)
Title: Normalisation of Multiple Variables in Large-Scale Datasets
Description: The robustness of many of the statistical techniques, such as factor analysis, applied in
the social sciences rests upon the assumption of item-level normality. However, when dealing
with real data, these assumptions are often not met. The Box-Cox transformation (Box & Cox, 1964)
<http://www.jstor.org/stable/2984418> provides an optimal transformation for non-normal variables. Yet, for
large datasets of continuous variables, its application in current software programs is cumbersome
with analysts having to take several steps to normalise each variable. We present an R package
'normalr' that enables researchers to make convenient optimal transformations of multiple variables
in datasets. This R package enables users to quickly and accurately: (1) anchor all of their
variables at 1.00, (2) select the desired precision with which the optimal lambda is estimated,
(3) apply each unique exponent to its variable, (4) rescale resultant values to within their
original X1 and X(n) ranges, and (5) provide original and transformed estimates of skewness,
kurtosis, and other inferential assessments of normality.
Author: Kevin Chang [aut, cre],
Matthew Courtney [aut]
Maintainer: Kevin Chang <k.chang@auckland.ac.nz>
Diff between normalr versions 0.0.3 dated 2017-01-17 and 1.0.0 dated 2018-03-29
DESCRIPTION | 10 ++-- MD5 | 25 +++++----- NAMESPACE | 6 +- NEWS.md | 9 +++ R/getLambda.R | 23 ++++++--- README.md | 1 inst/CITATION |only inst/shiny-examples/normalr/app.R | 4 - inst/shiny-examples/normalr/rsconnect/shinyapps.io/kcha193/normalr.dcf | 6 +- man/getLambda.Rd | 6 ++ man/normalise.Rd | 1 man/normaliseData.Rd | 1 man/normalrShiny.Rd | 1 man/testData.Rd | 1 14 files changed, 58 insertions(+), 36 deletions(-)
Title: Global Surface Summary of the Day (GSOD) Weather Data from R
Description: Provides automated downloading, parsing, cleaning, unit conversion
and formatting of Global Surface Summary of the Day (GSOD) weather data from
the from the USA National Centers for Environmental Information (NCEI) for
use in R. Units are converted from from United States Customary System
(USCS) units to International System of Units (SI). Stations may be
individually checked for number of missing days defined by the user, where
stations with too many missing observations are omitted. Only stations with
valid reported latitude and longitude values are permitted in the final
data. Additional useful elements, saturation vapour pressure (es), actual
vapour pressure (ea) and relative humidity are calculated from the original
data and included in the final data set. The resulting data include station
identification information, state, country, latitude, longitude, elevation,
weather observations and associated flags. Data may be automatically saved
to disk. File output may be returned as a comma-separated values (CSV) or
GeoPackage (GPKG) file. Additional data are included with this R package: a
list of elevation values for stations between -60 and 60 degrees latitude
derived from the Shuttle Radar Topography Measuring Mission (SRTM). For
information on the GSOD data from NCEI, please see the GSOD readme.txt file
available from, <http://www1.ncdc.noaa.gov/pub/data/gsod/readme.txt>.
Author: Adam Sparks [aut, cre] (<https://orcid.org/0000-0002-0061-8359>),
Tomislav Hengl [aut] (<https://orcid.org/0000-0002-9921-5129>),
Andrew Nelson [aut] (<https://orcid.org/0000-0002-7249-3778>),
Hugh Parsonage [cph, ctb] (<https://orcid.org/0000-0003-4055-0835>),
Bob Rudis [cph, ctb] (<https://orcid.org/0000-0001-5670-2640>)
Maintainer: Adam Sparks <adamhsparks@gmail.com>
Diff between GSODR versions 1.1.2 dated 2017-12-15 and 1.2.0 dated 2018-03-29
DESCRIPTION | 23 - MD5 | 54 +- NEWS.md | 38 + R/GSODR-package.R | 16 R/get_GSOD.R | 127 +----- R/reformat_GSOD.R | 7 README.md | 72 +-- build/vignette.rds |binary inst/doc/GSODR.R | 181 ++++++++- inst/doc/GSODR.Rmd | 256 +++++++++++- inst/doc/GSODR.html | 360 ++++++++++++------ inst/doc/Specified_stations_for_a_range_of_years.R | 204 +++++----- inst/doc/Specified_stations_for_a_range_of_years.Rmd | 80 +++- inst/doc/Specified_stations_for_a_range_of_years.html | 54 +- inst/doc/Working_with_spatial_and_climate_data.Rmd | 77 ++- inst/doc/Working_with_spatial_and_climate_data.html | 18 inst/extdata/country_list.rda |binary inst/extdata/isd_history.rda |binary inst/vector |only man/GSODR.Rd | 13 man/figures/GSODR-hex.png |only man/get_GSOD.Rd | 50 -- man/reformat_GSOD.Rd | 5 tests/testthat/test-get_GSOD.R | 52 -- tests/testthat/test-reformat_GSOD.R | 7 vignettes/GSODR.Rmd | 256 +++++++++++- vignettes/Loop-Figure-1.png |only vignettes/Loop-Figure-2.png |only vignettes/Specified_stations_for_a_range_of_years.Rmd | 80 +++- vignettes/Working_with_spatial_and_climate_data.Rmd | 77 ++- 30 files changed, 1404 insertions(+), 703 deletions(-)
Title: Convert Between 'WKT' and 'GeoJSON'
Description: Convert 'WKT' to 'GeoJSON' and 'GeoJSON' to 'WKT'. Functions
included for converting between 'GeoJSON' to 'WKT', creating both
'GeoJSON' features, and non-features, creating 'WKT' from R objects
(e.g., lists, data.frames, vectors), and linting 'WKT'.
Author: Scott Chamberlain [aut, cre]
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between wellknown versions 0.1.0 dated 2015-10-22 and 0.5.0 dated 2018-03-29
wellknown-0.1.0/wellknown/R/pipe.R |only wellknown-0.1.0/wellknown/man/pipe.Rd |only wellknown-0.5.0/wellknown/DESCRIPTION | 17 wellknown-0.5.0/wellknown/LICENSE | 2 wellknown-0.5.0/wellknown/MD5 | 108 wellknown-0.5.0/wellknown/NAMESPACE | 14 wellknown-0.5.0/wellknown/NEWS.md |only wellknown-0.5.0/wellknown/R/as.json.R | 18 wellknown-0.5.0/wellknown/R/as_featurecollection.R | 14 wellknown-0.5.0/wellknown/R/circularstring.R | 7 wellknown-0.5.0/wellknown/R/dump.R |only wellknown-0.5.0/wellknown/R/geojson2wkt.R | 314 - wellknown-0.5.0/wellknown/R/geometrycollection.R | 6 wellknown-0.5.0/wellknown/R/get_centroid.R |only wellknown-0.5.0/wellknown/R/linestring.R | 79 wellknown-0.5.0/wellknown/R/lint.R | 18 wellknown-0.5.0/wellknown/R/multilinestring.R | 85 wellknown-0.5.0/wellknown/R/multipoint.R | 96 wellknown-0.5.0/wellknown/R/multipolygon.R | 108 wellknown-0.5.0/wellknown/R/onLoad.R |only wellknown-0.5.0/wellknown/R/point.R | 92 wellknown-0.5.0/wellknown/R/polygon.R | 134 wellknown-0.5.0/wellknown/R/properties.R | 26 wellknown-0.5.0/wellknown/R/wellknown-package.R | 31 wellknown-0.5.0/wellknown/R/wkb.R |only wellknown-0.5.0/wellknown/R/wkt2geojson.R | 332 +- wellknown-0.5.0/wellknown/R/wktview.R | 36 wellknown-0.5.0/wellknown/R/zzz.R | 51 wellknown-0.5.0/wellknown/README.md | 200 - wellknown-0.5.0/wellknown/build/vignette.rds |binary wellknown-0.5.0/wellknown/inst/doc/wellknown_vignette.R | 78 wellknown-0.5.0/wellknown/inst/doc/wellknown_vignette.Rmd | 96 wellknown-0.5.0/wellknown/inst/doc/wellknown_vignette.html | 1911 ++++++++++-- wellknown-0.5.0/wellknown/inst/ignore/geojson2wkt_.R |only wellknown-0.5.0/wellknown/inst/js |only wellknown-0.5.0/wellknown/man/as_featurecollection.Rd | 13 wellknown-0.5.0/wellknown/man/as_json.Rd | 19 wellknown-0.5.0/wellknown/man/circularstring.Rd | 18 wellknown-0.5.0/wellknown/man/geojson2wkt.Rd | 455 ++ wellknown-0.5.0/wellknown/man/geometrycollection.Rd | 13 wellknown-0.5.0/wellknown/man/get_centroid.Rd |only wellknown-0.5.0/wellknown/man/linestring.Rd | 50 wellknown-0.5.0/wellknown/man/lint.Rd | 7 wellknown-0.5.0/wellknown/man/multilinestring.Rd | 72 wellknown-0.5.0/wellknown/man/multipoint.Rd | 62 wellknown-0.5.0/wellknown/man/multipolygon.Rd | 81 wellknown-0.5.0/wellknown/man/point.Rd | 51 wellknown-0.5.0/wellknown/man/polygon.Rd | 102 wellknown-0.5.0/wellknown/man/properties.Rd | 16 wellknown-0.5.0/wellknown/man/us_cities.Rd | 16 wellknown-0.5.0/wellknown/man/wellknown-package.Rd | 22 wellknown-0.5.0/wellknown/man/wkb.Rd |only wellknown-0.5.0/wellknown/man/wkt2geojson.Rd | 142 wellknown-0.5.0/wellknown/man/wktview.Rd | 25 wellknown-0.5.0/wellknown/tests/testthat/test-geojson2wkt.r | 145 wellknown-0.5.0/wellknown/tests/testthat/test-properties.r | 4 wellknown-0.5.0/wellknown/tests/testthat/test-wkt2geojson.R | 100 wellknown-0.5.0/wellknown/tests/testthat/test-wktview.R | 6 wellknown-0.5.0/wellknown/vignettes/wellknown_vignette.Rmd | 96 59 files changed, 4067 insertions(+), 1321 deletions(-)
Title: 'SQLite' Interface for R
Description: Embeds the 'SQLite' database engine in R and
provides an interface compliant with the 'DBI' package. The
source for the 'SQLite' engine is included.
Author: Kirill Müller [aut, cre] (<https://orcid.org/0000-0002-1416-3412>),
Hadley Wickham [aut],
David A. James [aut],
Seth Falcon [aut],
SQLite Authors [ctb] (for the included SQLite sources),
Liam Healy [ctb] (for the included SQLite sources),
R Consortium [fnd],
RStudio [cph]
Maintainer: Kirill Müller <krlmlr+r@mailbox.org>
Diff between RSQLite versions 2.0 dated 2017-06-19 and 2.1.0 dated 2018-03-29
RSQLite-2.0/RSQLite/src/ColumnDataType.h |only RSQLite-2.0/RSQLite/src/ColumnStorage.cpp |only RSQLite-2.0/RSQLite/src/ColumnStorage.h |only RSQLite-2.0/RSQLite/src/SqliteColumn.cpp |only RSQLite-2.0/RSQLite/src/SqliteColumn.h |only RSQLite-2.0/RSQLite/src/SqliteConnection.cpp |only RSQLite-2.0/RSQLite/src/SqliteConnection.h |only RSQLite-2.0/RSQLite/src/SqliteResult.cpp |only RSQLite-2.0/RSQLite/src/SqliteResult.h |only RSQLite-2.0/RSQLite/src/vendor/sqlite3/sqlite3.h.orig |only RSQLite-2.1.0/RSQLite/DESCRIPTION | 36 RSQLite-2.1.0/RSQLite/MD5 | 104 RSQLite-2.1.0/RSQLite/NAMESPACE | 4 RSQLite-2.1.0/RSQLite/NEWS.md | 25 RSQLite-2.1.0/RSQLite/R/RcppExports.R | 64 RSQLite-2.1.0/RSQLite/R/SQLiteConnection.R | 94 RSQLite-2.1.0/RSQLite/R/SQLiteDriver.R | 3 RSQLite-2.1.0/RSQLite/R/SQLiteResult.R | 2 RSQLite-2.1.0/RSQLite/R/coerce.R |only RSQLite-2.1.0/RSQLite/R/connect.R | 14 RSQLite-2.1.0/RSQLite/R/copy.R | 2 RSQLite-2.1.0/RSQLite/R/export.R | 17 RSQLite-2.1.0/RSQLite/R/query.R | 33 RSQLite-2.1.0/RSQLite/R/table.R | 52 RSQLite-2.1.0/RSQLite/R/transactions.R | 2 RSQLite-2.1.0/RSQLite/build/vignette.rds |binary RSQLite-2.1.0/RSQLite/inst/doc/RSQLite.Rmd | 1 RSQLite-2.1.0/RSQLite/inst/doc/RSQLite.html | 10 RSQLite-2.1.0/RSQLite/man/SQLite.Rd | 9 RSQLite-2.1.0/RSQLite/man/SQLiteConnection-class.Rd | 13 RSQLite-2.1.0/RSQLite/src/DbColumn.cpp |only RSQLite-2.1.0/RSQLite/src/DbColumn.h |only RSQLite-2.1.0/RSQLite/src/DbColumnDataSource.cpp |only RSQLite-2.1.0/RSQLite/src/DbColumnDataSource.h |only RSQLite-2.1.0/RSQLite/src/DbColumnDataSourceFactory.cpp |only RSQLite-2.1.0/RSQLite/src/DbColumnDataSourceFactory.h |only RSQLite-2.1.0/RSQLite/src/DbColumnDataType.h |only RSQLite-2.1.0/RSQLite/src/DbColumnStorage.cpp |only RSQLite-2.1.0/RSQLite/src/DbColumnStorage.h |only RSQLite-2.1.0/RSQLite/src/DbConnection.cpp |only RSQLite-2.1.0/RSQLite/src/DbConnection.h |only RSQLite-2.1.0/RSQLite/src/DbDataFrame.cpp |only RSQLite-2.1.0/RSQLite/src/DbDataFrame.h |only RSQLite-2.1.0/RSQLite/src/DbResult.cpp |only RSQLite-2.1.0/RSQLite/src/DbResult.h |only RSQLite-2.1.0/RSQLite/src/RSQLite.h | 9 RSQLite-2.1.0/RSQLite/src/RSQLite_types.h | 18 RSQLite-2.1.0/RSQLite/src/RcppExports.cpp | 199 RSQLite-2.1.0/RSQLite/src/SqliteColumnDataSource.cpp | 45 RSQLite-2.1.0/RSQLite/src/SqliteColumnDataSource.h | 16 RSQLite-2.1.0/RSQLite/src/SqliteColumnDataSourceFactory.cpp |only RSQLite-2.1.0/RSQLite/src/SqliteColumnDataSourceFactory.h |only RSQLite-2.1.0/RSQLite/src/SqliteDataFrame.cpp | 58 RSQLite-2.1.0/RSQLite/src/SqliteDataFrame.h | 27 RSQLite-2.1.0/RSQLite/src/SqliteResultImpl.cpp | 156 RSQLite-2.1.0/RSQLite/src/SqliteResultImpl.h | 20 RSQLite-2.1.0/RSQLite/src/connection.cpp | 70 RSQLite-2.1.0/RSQLite/src/integer64.h | 10 RSQLite-2.1.0/RSQLite/src/result.cpp | 58 RSQLite-2.1.0/RSQLite/src/vendor/sqlite3/sqlite3.c |18058 +++++++----- RSQLite-2.1.0/RSQLite/src/vendor/sqlite3/sqlite3.h | 619 RSQLite-2.1.0/RSQLite/src/vendor/sqlite3/sqlite3ext.h | 31 RSQLite-2.1.0/RSQLite/tests/testthat/helper-astyle.R | 4 RSQLite-2.1.0/RSQLite/tests/testthat/test-DBItest.R | 4 RSQLite-2.1.0/RSQLite/tests/testthat/test-dbClearResult.R | 2 RSQLite-2.1.0/RSQLite/tests/testthat/test-dbConnect.R | 6 RSQLite-2.1.0/RSQLite/vignettes/RSQLite.Rmd | 1 67 files changed, 12516 insertions(+), 7380 deletions(-)
Title: Generalized Joint Attribute Modeling
Description: Analyzes joint attribute data (e.g., species abundance) that are combinations of continuous and discrete data with Gibbs sampling. Full model and computation details are described in Clark et al. (2018) <doi.org/10.1002/ecm.1241>.
Author: James S. Clark, Daniel Taylor-Rodriquez
Maintainer: James S. Clark <jimclark@duke.edu>
Diff between gjam versions 2.2.0 dated 2018-03-26 and 2.2.1 dated 2018-03-29
DESCRIPTION | 10 MD5 | 14 R/gjamHfunctions.R | 759 +++++++++++++++++++++++++++++---------------- inst/doc/gjamVignette.R | 20 - inst/doc/gjamVignette.Rmd | 26 - inst/doc/gjamVignette.html | 46 +- man/gjam-package.Rd | 4 vignettes/gjamVignette.Rmd | 26 - 8 files changed, 577 insertions(+), 328 deletions(-)
Title: 'ggplot2' Faceting Utilities for Geographical Data
Description: Provides geofaceting functionality for 'ggplot2'. Geofaceting arranges a sequence of plots of data for different geographical entities into a grid that preserves some of the geographical orientation.
Author: Ryan Hafen [aut, cre],
Barret Schloerke [ctb]
Maintainer: Ryan Hafen <rhafen@gmail.com>
Diff between geofacet versions 0.1.5 dated 2017-07-19 and 0.1.9 dated 2018-03-29
geofacet-0.1.5/geofacet/data/br_grid1.rda |only geofacet-0.1.5/geofacet/data/in_central_counties_grid1.rda |only geofacet-0.1.5/geofacet/data/in_counties_grid1.rda |only geofacet-0.1.5/geofacet/data/or_counties_grid1.rda |only geofacet-0.1.5/geofacet/data/wa_counties_grid1.rda |only geofacet-0.1.9/geofacet/DESCRIPTION | 18 geofacet-0.1.9/geofacet/MD5 | 131 ++-- geofacet-0.1.9/geofacet/NAMESPACE | 20 geofacet-0.1.9/geofacet/NEWS.md | 10 geofacet-0.1.9/geofacet/R/facet_geo.R | 122 +++ geofacet-0.1.9/geofacet/R/grid_auto.R |only geofacet-0.1.9/geofacet/R/grid_docs.R | 320 +++++++++- geofacet-0.1.9/geofacet/R/misc.R | 9 geofacet-0.1.9/geofacet/R/package-geofacet.R | 22 geofacet-0.1.9/geofacet/R/valid_grids.R | 25 geofacet-0.1.9/geofacet/build/vignette.rds |binary geofacet-0.1.9/geofacet/data/ar_buenosaires_communes_grid1.rda |only geofacet-0.1.9/geofacet/data/ar_cordoba_dep_grid1.rda |only geofacet-0.1.9/geofacet/data/ar_tucuman_province_grid1.rda |only geofacet-0.1.9/geofacet/data/argentina_grid1.rda |binary geofacet-0.1.9/geofacet/data/aus_grid1.rda |binary geofacet-0.1.9/geofacet/data/auto_countries.rda |only geofacet-0.1.9/geofacet/data/auto_states.rda |only geofacet-0.1.9/geofacet/data/bd_upazila_grid1.rda |only geofacet-0.1.9/geofacet/data/be_province_grid1.rda |only geofacet-0.1.9/geofacet/data/br_states_grid1.rda |only geofacet-0.1.9/geofacet/data/br_states_grid2.rda |only geofacet-0.1.9/geofacet/data/ch_aargau_districts_grid1.rda |only geofacet-0.1.9/geofacet/data/ch_cantons_grid1.rda |only geofacet-0.1.9/geofacet/data/ch_cantons_grid2.rda |only geofacet-0.1.9/geofacet/data/china_city_grid1.rda |only geofacet-0.1.9/geofacet/data/china_prov_grid1.rda |only geofacet-0.1.9/geofacet/data/china_prov_grid2.rda |only geofacet-0.1.9/geofacet/data/de_states_grid1.rda |binary geofacet-0.1.9/geofacet/data/eu_grid1.rda |binary geofacet-0.1.9/geofacet/data/fr_regions_grid1.rda |binary geofacet-0.1.9/geofacet/data/india_grid1.rda |binary geofacet-0.1.9/geofacet/data/india_grid2.rda |binary geofacet-0.1.9/geofacet/data/italy_grid1.rda |binary geofacet-0.1.9/geofacet/data/italy_grid2.rda |binary geofacet-0.1.9/geofacet/data/jo_gov_grid1.rda |only geofacet-0.1.9/geofacet/data/jp_prefs_grid1.rda |only geofacet-0.1.9/geofacet/data/kr_seoul_district_grid1.rda |only geofacet-0.1.9/geofacet/data/london_boroughs_grid.rda |binary geofacet-0.1.9/geofacet/data/mx_state_grid1.rda |binary geofacet-0.1.9/geofacet/data/mx_state_grid2.rda |binary geofacet-0.1.9/geofacet/data/mys_grid1.rda |binary geofacet-0.1.9/geofacet/data/ng_state_grid1.rda |only geofacet-0.1.9/geofacet/data/nhs_scot_grid.rda |binary geofacet-0.1.9/geofacet/data/nz_regions_grid1.rda |only geofacet-0.1.9/geofacet/data/nz_regions_grid2.rda |only geofacet-0.1.9/geofacet/data/oecd_grid1.rda |only geofacet-0.1.9/geofacet/data/pl_voivodeships_grid1.rda |only geofacet-0.1.9/geofacet/data/sa_prov_grid1.rda |binary geofacet-0.1.9/geofacet/data/scotland_local_authority_grid1.rda |binary geofacet-0.1.9/geofacet/data/se_counties_grid1.rda |binary geofacet-0.1.9/geofacet/data/se_counties_grid2.rda |only geofacet-0.1.9/geofacet/data/sea_grid1.rda |binary geofacet-0.1.9/geofacet/data/sf_bay_area_counties_grid1.rda |binary geofacet-0.1.9/geofacet/data/sk_province_grid1.rda |only geofacet-0.1.9/geofacet/data/sl_regions_grid1.rda |only geofacet-0.1.9/geofacet/data/spain_ccaa_grid1.rda |only geofacet-0.1.9/geofacet/data/spain_prov_grid1.rda |only geofacet-0.1.9/geofacet/data/spain_prov_grid2.rda |only geofacet-0.1.9/geofacet/data/ua_region_grid1.rda |binary geofacet-0.1.9/geofacet/data/uk_regions1.rda |only geofacet-0.1.9/geofacet/data/us_census_div_grid1.rda |only geofacet-0.1.9/geofacet/data/us_fl_counties_grid1.rda |only geofacet-0.1.9/geofacet/data/us_ia_counties_grid1.rda |only geofacet-0.1.9/geofacet/data/us_id_counties_grid1.rda |only geofacet-0.1.9/geofacet/data/us_in_central_counties_grid1.rda |only geofacet-0.1.9/geofacet/data/us_in_counties_grid1.rda |only geofacet-0.1.9/geofacet/data/us_nh_counties_grid1.rda |only geofacet-0.1.9/geofacet/data/us_or_counties_grid1.rda |only geofacet-0.1.9/geofacet/data/us_state_contiguous_grid1.rda |only geofacet-0.1.9/geofacet/data/us_state_grid1.rda |binary geofacet-0.1.9/geofacet/data/us_state_grid2.rda |binary geofacet-0.1.9/geofacet/data/us_state_grid3.rda |binary geofacet-0.1.9/geofacet/data/us_state_grid4.rda |only geofacet-0.1.9/geofacet/data/us_wa_counties_grid1.rda |only geofacet-0.1.9/geofacet/data/world_86countries_grid.rda |only geofacet-0.1.9/geofacet/data/world_countries_grid1.rda |only geofacet-0.1.9/geofacet/man/attach_spdf.Rd |only geofacet-0.1.9/geofacet/man/auto_names.Rd |only geofacet-0.1.9/geofacet/man/facet_geo.Rd | 3 geofacet-0.1.9/geofacet/man/geofacet.Rd | 2 geofacet-0.1.9/geofacet/man/get_ne_data.Rd |only geofacet-0.1.9/geofacet/man/grid_auto.Rd |only geofacet-0.1.9/geofacet/man/grid_design.Rd | 10 geofacet-0.1.9/geofacet/man/grid_preview.Rd | 6 geofacet-0.1.9/geofacet/man/grids.Rd | 284 ++++++++ geofacet-0.1.9/geofacet/man/plot.facet_geo.Rd |only geofacet-0.1.9/geofacet/man/print.facet_geo.Rd | 8 geofacet-0.1.9/geofacet/tests/testthat/test-auto.R |only 94 files changed, 871 insertions(+), 119 deletions(-)
Title: A Method to Download Department of Education College Scorecard
Data
Description: A method to download Department of Education College
Scorecard data using the public API
<https://collegescorecard.ed.gov/data/documentation/>. It is based on
the 'dplyr' model of piped commands to select and filter data in a
single chained function call. An API key from the U.S. Department of
Education is required.
Author: Benjamin Skinner [aut, cre] (<https://orcid.org/0000-0002-0337-7415>)
Maintainer: Benjamin Skinner <btskinner@virginia.edu>
Diff between rscorecard versions 0.7.0 dated 2018-03-08 and 0.7.1 dated 2018-03-29
DESCRIPTION | 6 MD5 | 10 NEWS.md | 5 R/sysdata.rda |binary build/vignette.rds |binary inst/doc/introduction.html | 662 ++++++++++++++++++--------------------------- 6 files changed, 281 insertions(+), 402 deletions(-)
Title: Qualitative Data Analysis
Description: Software for qualitative text analysis (Kuckartz, 2014, <doi:10.4135/9781446288719>). Current version only supports plain text, but it can import PDF highlights if package 'rjpod' (<https://r-forge.r-project.org/projects/rqda/>) is installed.
Author: Ronggui Huang
Maintainer: Ronggui Huang <ronggui.huang@gmail.com>
Diff between RQDA versions 0.3-0 dated 2017-07-23 and 0.3-1 dated 2018-03-29
DESCRIPTION | 18 +++++++++--------- MD5 | 14 ++++++++------ R/FileButton.R | 6 +++--- README.md | 24 ++++++++++++++++++++++++ inst/NEWS | 3 +++ man/RQDA-package.Rd | 8 +++++--- man/exportCodedFile.Rd | 2 +- po/R-ca_CA.po |only po/R-es_ES.po |only 9 files changed, 53 insertions(+), 22 deletions(-)
Title: Select and Download Climate Data from 'DWD' (German Weather
Service)
Description: Handle climate data from the 'DWD' ('Deutscher Wetterdienst', see
<https://www.dwd.de/EN/climate_environment/cdc/cdc.html> for more information).
Choose files with 'selectDWD()', download and process data sets with 'dataDWD()' and 'readDWD()'.
Author: Berry Boessenkool
Maintainer: Berry Boessenkool <berry-b@gmx.de>
Diff between rdwd versions 0.9.0 dated 2017-11-03 and 0.10.1 dated 2018-03-29
DESCRIPTION | 10 MD5 | 66 ++--- NAMESPACE | 66 ++--- NEWS | 18 + R/createIndex.R | 56 ++-- R/dataDWD.R | 2 R/indexFTP.R | 276 ++++++++++----------- R/nearbyStations.R | 9 R/rdwd-package.R | 7 R/readDWD.R | 8 R/selectDWD.R | 607 ++++++++++++++++++++++++----------------------- build/vignette.rds |binary data/fileIndex.rda |binary data/geoIndex.rda |binary data/metaIndex.rda |binary inst/doc/mapDWD.html | 8 inst/doc/rdwd.R | 20 + inst/doc/rdwd.Rmd | 26 +- inst/doc/rdwd.html | 96 ++++--- man/createIndex.Rd | 176 ++++++------- man/dataDWD.Rd | 262 ++++++++++---------- man/dirDWD.Rd | 82 +++--- man/findID.Rd | 124 ++++----- man/index.Rd | 108 ++++---- man/indexFTP.Rd | 155 ++++++------ man/lldist.Rd | 92 +++---- man/metaInfo.Rd | 60 ++-- man/nearbyStations.Rd | 215 ++++++++-------- man/rdwd.Rd | 69 ++--- man/readDWD.Rd | 131 +++++----- man/release_questions.Rd | 24 - man/rowDisplay.Rd | 52 ++-- man/selectDWD.Rd | 357 ++++++++++++++------------- vignettes/rdwd.Rmd | 26 +- 34 files changed, 1667 insertions(+), 1541 deletions(-)
Title: Historical and Contemporary Boundaries of the United States of
America
Description: The boundaries for geographical units in the United States of
America contained in this package include state, county, congressional
district, and zip code tabulation area. Contemporary boundaries are provided
by the U.S. Census Bureau (public domain). Historical boundaries for the
years from 1629 to 2000 are provided form the Newberry Library's 'Atlas of
Historical County Boundaries' (licensed CC BY-NC-SA). Additional data is
provided in the 'USAboundariesData' package; this package provides an
interface to access that data.
Author: Lincoln Mullen [aut, cre] (<https://orcid.org/0000-0001-5103-6917>),
Jordan Bratt [aut] (<https://orcid.org/0000-0001-9051-7203>),
United States Census Bureau [cph]
Maintainer: Lincoln Mullen <lincoln@lincolnmullen.com>
Diff between USAboundaries versions 0.3.0 dated 2017-07-08 and 0.3.1 dated 2018-03-29
USAboundaries-0.3.0/USAboundaries/tools/USAboundaries-refs.bib |only USAboundaries-0.3.1/USAboundaries/DESCRIPTION | 23 - USAboundaries-0.3.1/USAboundaries/MD5 | 51 +- USAboundaries-0.3.1/USAboundaries/NEWS.md | 8 USAboundaries-0.3.1/USAboundaries/R/filters.R | 10 USAboundaries-0.3.1/USAboundaries/R/install-data-pkg.R | 2 USAboundaries-0.3.1/USAboundaries/R/state_plane.R | 18 USAboundaries-0.3.1/USAboundaries/R/us_cities.R | 12 USAboundaries-0.3.1/USAboundaries/README.md | 205 ++++++---- USAboundaries-0.3.1/USAboundaries/build |only USAboundaries-0.3.1/USAboundaries/inst |only USAboundaries-0.3.1/USAboundaries/man/state_plane.Rd | 18 USAboundaries-0.3.1/USAboundaries/man/us_cities.Rd | 12 USAboundaries-0.3.1/USAboundaries/tests/testthat/test-us_cities.R | 10 USAboundaries-0.3.1/USAboundaries/tools/README-unnamed-chunk-2-1.png |binary USAboundaries-0.3.1/USAboundaries/tools/README-unnamed-chunk-2-2.png |binary USAboundaries-0.3.1/USAboundaries/tools/README-unnamed-chunk-2-3.png |binary USAboundaries-0.3.1/USAboundaries/tools/README-unnamed-chunk-2-4.png |binary USAboundaries-0.3.1/USAboundaries/tools/README-unnamed-chunk-2-5.png |binary USAboundaries-0.3.1/USAboundaries/tools/README-unnamed-chunk-2-6.png |binary USAboundaries-0.3.1/USAboundaries/tools/README-unnamed-chunk-3-1.png |binary USAboundaries-0.3.1/USAboundaries/tools/README-unnamed-chunk-3-2.png |binary USAboundaries-0.3.1/USAboundaries/tools/README-unnamed-chunk-3-3.png |only USAboundaries-0.3.1/USAboundaries/tools/README-unnamed-chunk-3-4.png |only USAboundaries-0.3.1/USAboundaries/tools/README-unnamed-chunk-3-5.png |only USAboundaries-0.3.1/USAboundaries/tools/README-unnamed-chunk-3-6.png |only USAboundaries-0.3.1/USAboundaries/tools/README-unnamed-chunk-4-1.png |only USAboundaries-0.3.1/USAboundaries/tools/README-unnamed-chunk-4-2.png |only USAboundaries-0.3.1/USAboundaries/vignettes |only 29 files changed, 256 insertions(+), 113 deletions(-)
Title: Fast, Consistent Tokenization of Natural Language Text
Description: Convert natural language text into tokens. Includes tokenizers for
shingled n-grams, skip n-grams, words, word stems, sentences, paragraphs,
characters, shingled characters, lines, tweets, Penn Treebank, regular
expressions, as well as functions for counting characters, words, and sentences,
and a function for splitting longer texts into separate documents, each with
the same number of words. The tokenizers have a consistent interface, and
the package is built on the 'stringi' and 'Rcpp' packages for fast
yet correct tokenization in 'UTF-8'.
Author: Lincoln Mullen [aut, cre] (<https://orcid.org/0000-0001-5103-6917>),
Os Keyes [ctb] (<https://orcid.org/0000-0001-5196-609X>),
Dmitriy Selivanov [ctb],
Jeffrey Arnold [ctb] (<https://orcid.org/0000-0001-9953-3904>),
Kenneth Benoit [ctb] (<https://orcid.org/0000-0002-0797-564X>)
Maintainer: Lincoln Mullen <lincoln@lincolnmullen.com>
Diff between tokenizers versions 0.2.0 dated 2018-03-21 and 0.2.1 dated 2018-03-29
DESCRIPTION | 15 +++++++------ MD5 | 19 +++++++++-------- NEWS.md | 6 ++++- README.md | 34 ++++++++++++++++++------------- inst/CITATION |only inst/doc/introduction-to-tokenizers.Rmd | 1 inst/doc/introduction-to-tokenizers.html | 2 - inst/doc/tif-and-tokenizers.Rmd | 1 inst/doc/tif-and-tokenizers.html | 2 - vignettes/introduction-to-tokenizers.Rmd | 1 vignettes/tif-and-tokenizers.Rmd | 1 11 files changed, 43 insertions(+), 39 deletions(-)
Title: Stack and Reshape Datasets After Splitting Concatenated Values
Description: Online data collection tools like Google Forms often export
multiple-response questions with data concatenated in cells. The
concat.split (cSplit) family of functions splits such data into separate
cells. The package also includes functions to stack groups of columns and
to reshape wide data, even when the data are "unbalanced"---something
which reshape (from base R) does not handle, and which melt and dcast from
reshape2 do not easily handle.
Author: Ananda Mahto
Maintainer: Ananda Mahto <ananda@mahto.info>
Diff between splitstackshape versions 1.4.2 dated 2014-10-23 and 1.4.4 dated 2018-03-29
splitstackshape-1.4.2/splitstackshape/NEWS |only splitstackshape-1.4.4/splitstackshape/DESCRIPTION | 22 +- splitstackshape-1.4.4/splitstackshape/MD5 | 72 ++++----- splitstackshape-1.4.4/splitstackshape/NAMESPACE | 7 splitstackshape-1.4.4/splitstackshape/NEWS.md |only splitstackshape-1.4.4/splitstackshape/R/Reshape.R | 55 +++---- splitstackshape-1.4.4/splitstackshape/R/cSplit.R | 46 ++---- splitstackshape-1.4.4/splitstackshape/R/concat.split.R | 76 +--------- splitstackshape-1.4.4/splitstackshape/R/getanID.R | 4 splitstackshape-1.4.4/splitstackshape/R/listCol_l.R | 2 splitstackshape-1.4.4/splitstackshape/R/listCol_w.R | 6 splitstackshape-1.4.4/splitstackshape/R/splitstackshape-package.R | 4 splitstackshape-1.4.4/splitstackshape/R/splitstackshape_helper_functions.R | 5 splitstackshape-1.4.4/splitstackshape/README.md | 12 - splitstackshape-1.4.4/splitstackshape/man/FacsToChars.Rd | 12 - splitstackshape-1.4.4/splitstackshape/man/Names.Rd | 6 splitstackshape-1.4.4/splitstackshape/man/NoSep.Rd | 12 - splitstackshape-1.4.4/splitstackshape/man/Reshape.Rd | 42 +++-- splitstackshape-1.4.4/splitstackshape/man/Stacked.Rd | 12 - splitstackshape-1.4.4/splitstackshape/man/cSplit.Rd | 42 ++--- splitstackshape-1.4.4/splitstackshape/man/cSplit_f.Rd | 12 - splitstackshape-1.4.4/splitstackshape/man/charMat.Rd | 12 - splitstackshape-1.4.4/splitstackshape/man/concat.split.Rd | 12 - splitstackshape-1.4.4/splitstackshape/man/concat.split.compact.Rd | 30 +-- splitstackshape-1.4.4/splitstackshape/man/concat.split.expanded.Rd | 16 +- splitstackshape-1.4.4/splitstackshape/man/concat.split.list.Rd | 14 + splitstackshape-1.4.4/splitstackshape/man/concat.split.multiple.Rd | 14 + splitstackshape-1.4.4/splitstackshape/man/concat.test.Rd | 4 splitstackshape-1.4.4/splitstackshape/man/expandRows.Rd | 16 +- splitstackshape-1.4.4/splitstackshape/man/getanID.Rd | 6 splitstackshape-1.4.4/splitstackshape/man/listCol_l.Rd | 12 - splitstackshape-1.4.4/splitstackshape/man/listCol_w.Rd | 12 - splitstackshape-1.4.4/splitstackshape/man/merged.stack.Rd | 12 - splitstackshape-1.4.4/splitstackshape/man/numMat.Rd | 12 - splitstackshape-1.4.4/splitstackshape/man/othernames.Rd | 12 - splitstackshape-1.4.4/splitstackshape/man/read.concat.Rd | 12 - splitstackshape-1.4.4/splitstackshape/man/splitstackshape-package.Rd | 12 - splitstackshape-1.4.4/splitstackshape/man/stratified.Rd | 14 + 38 files changed, 333 insertions(+), 338 deletions(-)
More information about splitstackshape at CRAN
Permanent link
Title: Classification and Regression Training
Description: Misc functions for training and plotting classification and
regression models.
Author: Max Kuhn. Contributions from Jed Wing, Steve Weston, Andre
Williams, Chris Keefer, Allan Engelhardt, Tony Cooper, Zachary Mayer,
Brenton Kenkel, the R Core Team, Michael Benesty, Reynald Lescarbeau,
Andrew Ziem, Luca Scrucca, Yuan Tang, Can Candan, and Tyler Hunt.
Maintainer: Max Kuhn <mxkuhn@gmail.com>
Diff between caret versions 6.0-78 dated 2017-12-10 and 6.0-79 dated 2018-03-29
caret-6.0-78/caret/inst/doc/caret.Rnw |only caret-6.0-78/caret/inst/doc/caret.pdf |only caret-6.0-78/caret/vignettes/algorithm.tex |only caret-6.0-78/caret/vignettes/caret.Rnw |only caret-6.0-78/caret/vignettes/train_algo.pdf |only caret-6.0-79/caret/DESCRIPTION | 17 caret-6.0-79/caret/MD5 | 61 caret-6.0-79/caret/NAMESPACE | 1 caret-6.0-79/caret/R/caret-package.R | 2 caret-6.0-79/caret/R/confusionMatrix.R | 11 caret-6.0-79/caret/R/extractProb.R | 108 - caret-6.0-79/caret/R/ggplot.R | 2 caret-6.0-79/caret/R/plot.train.R | 2 caret-6.0-79/caret/R/preProcess.R | 2 caret-6.0-79/caret/R/predict.train.R | 10 caret-6.0-79/caret/R/recipes.R | 666 +++---- caret-6.0-79/caret/R/resamples.R | 422 ++--- caret-6.0-79/caret/R/selectByFilter.R | 4 caret-6.0-79/caret/R/train.default.R | 7 caret-6.0-79/caret/R/varImp.R | 14 caret-6.0-79/caret/R/workflows.R | 14 caret-6.0-79/caret/build/vignette.rds |binary caret-6.0-79/caret/inst/NEWS.Rd | 1000 ++++++------ caret-6.0-79/caret/inst/doc/caret.R | 186 -- caret-6.0-79/caret/inst/doc/caret.Rmd |only caret-6.0-79/caret/inst/doc/caret.html |only caret-6.0-79/caret/inst/models/models.RData |binary caret-6.0-79/caret/man/caretSBF.Rd | 4 caret-6.0-79/caret/man/models.Rd | 20 caret-6.0-79/caret/man/resamples.Rd | 4 caret-6.0-79/caret/man/scat.Rd | 2 caret-6.0-79/caret/man/varImp.Rd | 3 caret-6.0-79/caret/man/xyplot.resamples.Rd | 4 caret-6.0-79/caret/tests/testthat/test_preProcess_methods.R | 9 caret-6.0-79/caret/vignettes/caret.Rmd |only caret-6.0-79/caret/vignettes/train_algo.png |only 36 files changed, 1287 insertions(+), 1288 deletions(-)
Title: Stock Data Analysis Functions
Description: Analysis of stock data ups and downs trend, the stock technical analysis indicators function have trend line, reversal pattern and market trend.
Author: Chun-Yu Liu [aut,cph],
Shu-Nung Yao [rev,ths]
Maintainer: Chun-Yu Liu <john401528@gmail.com>
Diff between lcyanalysis versions 1.0.2 dated 2018-03-19 and 1.0.3 dated 2018-03-29
DESCRIPTION | 10 +++++----- MD5 | 42 +++++++++++++++++++++--------------------- R/bearpower.R | 20 ++++++++++---------- R/bullpower.R | 20 ++++++++------------ R/down_function.R | 2 +- R/downtrend.R | 4 ++-- R/m_top.R | 4 ++-- R/up_function.R | 2 +- R/uptrend.R | 4 ++-- R/v_bottom.R | 4 ++-- R/v_top.R | 4 ++-- R/w_bottom.R | 4 ++-- man/bearpower.Rd | 2 +- man/bullpower.Rd | 2 +- man/down_function.Rd | 2 +- man/downtrend.Rd | 2 +- man/m_top.Rd | 2 +- man/up_function.Rd | 2 +- man/uptrend.Rd | 2 +- man/v_bottom.Rd | 2 +- man/v_top.Rd | 2 +- man/w_bottom.Rd | 2 +- 22 files changed, 68 insertions(+), 72 deletions(-)
Title: Various Utilities for Microbial Genomics and Metagenomics
Description: A collection of functions for microbial ecology and other
applications of genomics and metagenomics. Companion package for the
Enveomics Collection (Rodriguez-R, L.M. and Konstantinidis, K.T., 2016
<DOI:10.7287/peerj.preprints.1900v1>).
Author: Luis M. Rodriguez-R [aut, cre]
Maintainer: Luis M. Rodriguez-R <lmrodriguezr@gmail.com>
Diff between enveomics.R versions 1.2.0 dated 2018-02-21 and 1.2.1 dated 2018-03-29
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/recplot2.R | 20 +++++++++++--------- man/plot.enve.RecPlot2.Rd | 2 +- 4 files changed, 18 insertions(+), 16 deletions(-)
Title: Density Estimation and Random Number Generation with
Distribution Element Trees
Description: Density estimation for possibly large data sets and conditional/unconditional random number generation or bootstrapping with distribution element trees. The function 'det.construct' translates a dataset into a distribution element tree. To evaluate the probability density based on a previously computed tree at arbitrary query points, the function 'det.query' is available. The functions 'det1' and 'det2' provide density estimation and plotting for one- and two-dimensional datasets. Conditional/unconditional smooth bootstrapping from an available distribution element tree can be performed by 'det.rnd'. For more details on distribution element trees, see: Meyer, D.W. (2016) <arXiv:1610.00345> or Meyer, D.W., Statistics and Computing (2017) <doi:10.1007/s11222-017-9751-9> and Meyer, D.W. (2017) <arXiv:1711.04632>.
Author: Daniel Meyer
Maintainer: Daniel Meyer <meyerda@ethz.ch>
Diff between detpack versions 1.0.1 dated 2018-01-23 and 1.1.0 dated 2018-03-29
DESCRIPTION | 8 +- MD5 | 37 ++++++------ NEWS | 11 +++ R/det1.R | 32 ++++++----- R/det2.R | 147 +++++++++++++++++++++++++++++++++++++++++---------- R/detconstruct.R | 61 ++++++++++++--------- R/detleafs.R | 4 - R/detquery.R | 61 +++++++++++---------- R/detrnd.R | 56 ++++++++++--------- R/testing.R | 18 +++--- man/chi2indeptest.Rd | 4 - man/contourRect.Rd |only man/det.construct.Rd | 18 +++--- man/det.cut.Rd | 2 man/det.de.Rd | 2 man/det.leafs.Rd | 2 man/det.query.Rd | 22 +++---- man/det.rnd.Rd | 28 ++++----- man/det1.Rd | 27 ++++++--- man/det2.Rd | 30 +++++----- 20 files changed, 351 insertions(+), 219 deletions(-)
Title: Statistical Analysis of Chemistry, Histopathology, and
Reproduction Endpoints Including Repeated Measures and
Multi-Generation Studies
Description: A front end for the statistical analyses involved in the tier II endocrine
disruptor screening program. The analyses available to this package are:
Rao-Scott adjusted Cochran-Armitage test for trend By Slices (RSCABS),
a Standard Cochran-Armitage test for trend By Slices (SCABS),
mixed effects Cox proportional model, Jonckheere-Terpstra step down trend test
Dunn test, one way ANOVA, weighted ANOVA, mixed effects ANOVA, repeated
measures ANOVA, and Dunnett test.
Author: Joe Swintek [aut, cre],
Kevin Flynn [ctb],
Jon Haselman [ctb]
Maintainer: Joe Swintek <swintek.joe@epa.gov>
Diff between StatCharrms versions 0.90.7 dated 2018-01-16 and 0.90.8 dated 2018-03-29
StatCharrms-0.90.7/StatCharrms/vignettes/StatCharrms.tex |only StatCharrms-0.90.8/StatCharrms/DESCRIPTION | 12 +-- StatCharrms-0.90.8/StatCharrms/MD5 | 37 +++++------ StatCharrms-0.90.8/StatCharrms/NAMESPACE | 1 StatCharrms-0.90.8/StatCharrms/R/Run.StatCharrms.R | 2 StatCharrms-0.90.8/StatCharrms/R/ShowChangeLog.R | 8 ++ StatCharrms-0.90.8/StatCharrms/R/StatCharrms-internal.R | 24 ++++++- StatCharrms-0.90.8/StatCharrms/R/ZZZ.r | 2 StatCharrms-0.90.8/StatCharrms/R/analyseTime2Effect.R | 36 ++++++++++- StatCharrms-0.90.8/StatCharrms/R/autoStdAnylsis.R | 2 StatCharrms-0.90.8/StatCharrms/R/buildResultsWindow.te.R | 43 ++++++++++--- StatCharrms-0.90.8/StatCharrms/R/forceStdAnalysis.R | 2 StatCharrms-0.90.8/StatCharrms/R/jonckheereTerpstraTest.R | 4 - StatCharrms-0.90.8/StatCharrms/R/makeSummaryTable.R | 45 +++++++++++++- StatCharrms-0.90.8/StatCharrms/inst/doc/StatCharrms.Rnw | 45 +++++++++----- StatCharrms-0.90.8/StatCharrms/inst/doc/StatCharrms.pdf |binary StatCharrms-0.90.8/StatCharrms/man/analyseTime2Effect.Rd | 5 + StatCharrms-0.90.8/StatCharrms/man/makeSummaryTable.Rd | 6 + StatCharrms-0.90.8/StatCharrms/vignettes/StatCharrms.Rnw | 45 +++++++++----- StatCharrms-0.90.8/StatCharrms/vignettes/Time2Event3.png |binary 20 files changed, 236 insertions(+), 83 deletions(-)
Title: Create and Evaluate NONMEM Models in a Project Context
Description: Systematically creates and modifies NONMEM(R) control streams. Harvests
NONMEM output, builds run logs, creates derivative data, generates diagnostics.
NONMEM (ICON Development Solutions <http://www.iconplc.com/>) is software for
nonlinear mixed effects modeling. See 'package?nonmemica'.
Author: Tim Bergsma
Maintainer: Tim Bergsma <bergsmat@gmail.com>
Diff between nonmemica versions 0.8.1 dated 2018-03-27 and 0.8.2 dated 2018-03-29
nonmemica-0.8.1/nonmemica/R/docx.R |only nonmemica-0.8.1/nonmemica/man/as.docx.Rd |only nonmemica-0.8.1/nonmemica/man/as.file.Rd |only nonmemica-0.8.1/nonmemica/man/as.flextable.Rd |only nonmemica-0.8.1/nonmemica/vignettes/index.html |only nonmemica-0.8.2/nonmemica/DESCRIPTION | 8 nonmemica-0.8.2/nonmemica/MD5 | 23 nonmemica-0.8.2/nonmemica/NAMESPACE | 9 nonmemica-0.8.2/nonmemica/R/partab.R | 2 nonmemica-0.8.2/nonmemica/build/vignette.rds |binary nonmemica-0.8.2/nonmemica/inst/doc/parameter-table.R | 8 nonmemica-0.8.2/nonmemica/inst/doc/parameter-table.Rmd | 10 nonmemica-0.8.2/nonmemica/inst/doc/parameter-table.html | 613 ---------------- nonmemica-0.8.2/nonmemica/man/partab.character.Rd | 4 nonmemica-0.8.2/nonmemica/vignettes/parameter-table.Rmd | 10 15 files changed, 27 insertions(+), 660 deletions(-)
Title: Default Color Maps from 'matplotlib'
Description: Implementation of the 'viridis' - the default -, 'magma', 'plasma',
'inferno', and 'cividis' color maps for 'R'. 'viridis', 'magma', 'plasma',
and 'inferno' are ported from 'matplotlib' <http://matplotlib.org/>, a
popular plotting library for 'python'. 'cividis', was developed by Jamie R.
Nuñez and Sean M. Colby. These color maps are designed in such a way that
they will analytically be perfectly perceptually-uniform, both in regular
form and also when converted to black-and-white. They are also designed to
be perceived by readers with the most common form of color blindness (all
color maps in this package) and color vision deficiency ('cividis' only).
Author: Simon Garnier [aut, cre],
Noam Ross [ctb, cph],
Bob Rudis [ctb, cph],
Marco Sciaini [ctb, cph],
Cédric Scherer [ctb, cph]
Maintainer: Simon Garnier <garnier@njit.edu>
Diff between viridis versions 0.5.0 dated 2018-02-02 and 0.5.1 dated 2018-03-29
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- build/vignette.rds |binary inst/doc/intro-to-viridis.html | 8 ++++---- 4 files changed, 11 insertions(+), 11 deletions(-)
Title: Spatial ARCH and GARCH Models (spGARCH)
Description: A collection of functions to deal with spatial and spatiotemporal autoregressive conditional heteroscedasticity (spatial ARCH and GARCH models) by Otto, Schmid, Garthoff (2017) <arXiv:1609.00711>: simulation of spatial ARCH-type processes (spARCH, exponential spARCH, complex spARCH); quasi-maximum-likelihood estimation of the parameters of spARCH models and spatial autoregressive models with spARCH disturbances, diagnostic checks, visualizations.
Author: Philipp Otto [cre, aut] (<https://orcid.org/0000-0002-9796-6682>)
Maintainer: Philipp Otto <potto@europa-uni.de>
Diff between spGARCH versions 0.1.2 dated 2018-03-28 and 0.1.3 dated 2018-03-29
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- man/extractAIC.spARCH.Rd | 1 - man/summary.spARCH.Rd | 3 --- src/Estimation.cpp | 16 ++++++++-------- 5 files changed, 15 insertions(+), 19 deletions(-)
Title: A Swiss-Army Knife for Data I/O
Description: Streamlined data import and export by making assumptions that
the user is probably willing to make: 'import()' and 'export()' determine
the data structure from the file extension, reasonable defaults are used for
data import and export (e.g., 'stringsAsFactors=FALSE'), web-based import is
natively supported (including from SSL/HTTPS), compressed files can be read
directly without explicit decompression, and fast import packages are used where
appropriate. An additional convenience function, 'convert()', provides a simple
method for converting between file types.
Author: Jason Becker [ctb],
Chung-hong Chan [aut],
Geoffrey CH Chan [ctb],
Thomas J. Leeper [aut, cre] (<https://orcid.org/0000-0003-4097-6326>),
Christopher Gandrud [ctb],
Andrew MacDonald [ctb],
Ista Zahn [ctb],
Stanislaus Stadlmann [ctb],
Ruaridh Williamson [ctb]
Maintainer: Thomas J. Leeper <thosjleeper@gmail.com>
Diff between rio versions 0.5.9 dated 2018-02-01 and 0.5.10 dated 2018-03-29
rio-0.5.10/rio/DESCRIPTION | 8 - rio-0.5.10/rio/MD5 | 17 +- rio-0.5.10/rio/NEWS.md | 134 +++++++++++------------ rio-0.5.10/rio/README.md | 10 - rio-0.5.10/rio/build/vignette.rds |binary rio-0.5.10/rio/inst/doc/rio.R | 17 +- rio-0.5.10/rio/tests/testthat/test_format_csvy.R | 15 +- rio-0.5.10/rio/tests/testthat/test_remote.R | 2 rio-0.5.10/rio/vignettes/rio.Rmd | 19 +-- rio-0.5.9/rio/inst/doc/rio.Rmd |only 10 files changed, 112 insertions(+), 110 deletions(-)
Title: 'Microsoft Academic' API Client
Description: The 'Microsoft Academic Knowledge' API provides programmatic access
to scholarly articles in the 'Microsoft Academic Graph'
(<https://academic.microsoft.com/>). Includes methods matching all 'Microsoft
Academic' API routes, including search, graph search, text similarity, and
interpret natural language query string.
Author: Scott Chamberlain [aut, cre]
Maintainer: Scott Chamberlain <myrmecocystus+r@gmail.com>
Diff between microdemic versions 0.2.0 dated 2018-01-15 and 0.3.0 dated 2018-03-29
DESCRIPTION | 10 ++-- MD5 | 34 ++++++++-------- NEWS.md | 9 ++++ R/abstract.R | 3 - R/evaluate.R | 7 +-- R/graph_search.R | 3 - R/microdemic-package.R | 25 ++++++++++-- R/similarity.R | 19 +++++---- R/zzz.R | 4 - README.md | 95 +++++++++++++++++++++++----------------------- man/ma_abstract.Rd | 7 +-- man/ma_calchist.Rd | 7 +-- man/ma_evaluate.Rd | 7 +-- man/ma_graph_search.Rd | 3 - man/ma_interpret.Rd | 3 - man/ma_search.Rd | 7 +-- man/ma_similarity.Rd | 15 +++---- man/microdemic-package.Rd | 24 ++++++++++- 18 files changed, 172 insertions(+), 110 deletions(-)
Title: Some Additional Multiple Imputation Functions, Especially for
'mice'
Description: Contains some auxiliary functions for multiple
imputation which complements existing functionality
in R.
In addition to some utility functions, main features
include plausible value imputation, multilevel
imputation functions (arbitrary number of levels,
hierarchical and non-hierarchical datasets),
imputation using partial least squares (PLS) for
high dimensional predictors, and nested multiple
imputation.
Author: Alexander Robitzsch [aut, cre], Simon Grund [aut],
Thorsten Henke [aut]
Maintainer: Alexander Robitzsch <robitzsch@ipn.uni-kiel.de>
Diff between miceadds versions 2.9-15 dated 2017-12-18 and 2.10-14 dated 2018-03-29
DESCRIPTION | 16 +++--- MD5 | 71 ++++++++++++++--------------- R/ANSI_create_table.R | 6 +- R/mice.impute.bygroup.R | 49 ++++++++++++++------ R/mice.impute.plausible.values.R | 40 ++++++++++------ R/mice.impute.weighted.norm.R | 4 - R/mice_imputation_extract_list_arguments.R | 5 +- R/mice_impute_bygroup_modify_arguments.R |only README.md | 1 data/data.allison.gssexp.rda |binary data/data.allison.hip.rda |binary data/data.allison.usnews.rda |binary data/data.enders.depression.rda |binary data/data.enders.eatingattitudes.rda |binary data/data.enders.employee.rda |binary data/data.graham.ex3.rda |binary data/data.graham.ex6.rda |binary data/data.graham.ex8a.rda |binary data/data.graham.ex8b.rda |binary data/data.graham.ex8c.rda |binary data/data.internet.rda |binary data/data.largescale.rda |binary data/data.ma01.rda |binary data/data.ma02.rda |binary data/data.ma03.rda |binary data/data.ma04.rda |binary data/data.ma05.rda |binary data/data.ma06.rda |binary data/data.ma07.rda |binary data/data.smallscale.rda |binary inst/NEWS | 28 +++++++++-- man/kernelpls.fit2.Rd | 4 - man/ma.wtd.statNA.Rd | 4 - man/mice.impute.bygroup.Rd | 6 +- man/mice.impute.plausible.values.Rd | 9 ++- man/mice.impute.tricube.pmm.Rd | 6 +- man/mice_impute_2l_lmer.Rd | 15 ++---- 37 files changed, 161 insertions(+), 103 deletions(-)
Title: Map Projections
Description: Converts latitude/longitude into projected coordinates.
Author: Doug McIlroy. Packaged for R by Ray Brownrigg and Thomas P
Minka, transition to Plan 9 codebase by Roger Bivand.
Maintainer: Alex Deckmyn <alex.deckmyn@meteo.be>
Diff between mapproj versions 1.2-5 dated 2017-06-08 and 1.2.6 dated 2018-03-29
DESCRIPTION | 10 +++++----- MD5 | 6 +++--- src/albers.c | 2 +- src/perspective.c | 2 +- 4 files changed, 10 insertions(+), 10 deletions(-)
Title: Applied Latent Semantic Analysis (LSA) Functions
Description: Provides functions that allow for convenient working
with latent semantic analysis (LSA). For actually building an LSA space, use the
package 'lsa' or other specialized software. A description of the LSA algorithm
can be found in Landauer and Dumais (1997) <doi:10.1037/0033-295X.104.2.211> .
Author: Fritz Guenther [aut, cre]
Maintainer: Fritz Guenther <fritz.guenther@uni-tuebingen.de>
Diff between LSAfun versions 0.5.1 dated 2016-11-28 and 0.5.2 dated 2018-03-29
ChangeLog | 7 +++++++ DESCRIPTION | 15 ++++++++------- MD5 | 36 ++++++++++++++++++------------------ R/Cosine.r | 10 ++++++++++ R/Predication.r | 10 ++++++++++ R/asym.R | 10 ++++++++++ R/choose.target.r | 6 ++++++ R/coherence.r | 6 ++++++ R/compose.r | 10 ++++++++++ R/conSIM.r | 20 ++++++++++++++++++++ R/costring.r | 10 ++++++++++ R/distance.r | 10 ++++++++++ R/multicos.r | 11 +++++++++++ R/multicostring.r | 10 ++++++++++ R/neighbors.r | 6 ++++++ R/pairwise.r | 10 ++++++++++ R/plausibility.r | 6 ++++++ R/plot_neighbors.r | 6 ++++++ R/plot_wordlist.r | 6 ++++++ 19 files changed, 180 insertions(+), 25 deletions(-)
Title: 'Java' Data Exchange for 'R' and 'rJava'
Description: Simplifies and extends data exchange between 'R' and 'Java'.
Author: Floid R. Gilbert [aut, cre],
David B. Dahl [aut]
Maintainer: Floid R. Gilbert <floid.r.gilbert@gmail.com>
Diff between jdx versions 0.1.2 dated 2018-01-19 and 0.1.3 dated 2018-03-29
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- NEWS | 17 ++++++++++++----- R/InitializePackage.R | 8 +++++--- build/vignette.rds |binary inst/doc/Introduction.Rmd | 12 ++++++++---- inst/doc/Introduction.html | 9 +++++---- vignettes/Introduction.Rmd | 12 ++++++++---- 8 files changed, 48 insertions(+), 30 deletions(-)
Title: Convert Statistical Analysis Objects into Tidy Data Frames
Description: Convert statistical analysis objects from R into tidy data frames,
so that they can more easily be combined, reshaped and otherwise processed
with tools like 'dplyr', 'tidyr' and 'ggplot2'. The package provides three
S3 generics: tidy, which summarizes a model's statistical findings such as
coefficients of a regression; augment, which adds columns to the original
data such as predictions, residuals and cluster assignments; and glance, which
provides a one-row summary of model-level statistics.
Author: David Robinson [aut, cre],
Matthieu Gomez [ctb],
Boris Demeshev [ctb],
Dieter Menne [ctb],
Benjamin Nutter [ctb],
Luke Johnston [ctb],
Ben Bolker [ctb],
Francois Briatte [ctb],
Jeffrey Arnold [ctb],
Jonah Gabry [ctb],
Luciano Selzer [ctb],
Gavin Simpson [ctb],
Jens Preussner [ctb],
Jay Hesselberth [ctb],
Matthew Lincoln [ctb],
Derek Chiu [ctb],
Hadley Wickham [ctb]
Maintainer: David Robinson <admiral.david@gmail.com>
Diff between broom versions 0.4.3 dated 2017-11-20 and 0.4.4 dated 2018-03-29
DESCRIPTION | 22 ++--- MD5 | 118 ++++++++++++++++++++--------- NAMESPACE | 2 R/btergm_tidiers.R | 2 R/felm_tidiers.R | 5 - R/gam_tidiers.R | 19 ++-- R/map_tidiers.R | 2 R/mclust_tidiers.R | 2 R/multinom_tidiers.R | 2 R/orcutt_tidiers.R | 2 R/robust_tidiers.R | 13 +-- R/sp_tidiers.R | 2 R/stats_tidiers.R | 7 - R/survival_tidiers.R | 11 +- build/vignette.rds |binary inst/doc/bootstrapping.html | 2 inst/doc/broom_and_dplyr.html | 67 ++++++++-------- inst/doc/kmeans.R | 23 ++++- inst/doc/kmeans.Rmd | 23 ++++- inst/doc/kmeans.html | 23 ++++- man/aareg_tidiers.Rd | 3 man/gam_tidiers.Rd | 8 + man/robust_tidiers.Rd | 2 tests/testthat/test-arima.R |only tests/testthat/test-auc.R |only tests/testthat/test-augment.R | 15 +++ tests/testthat/test-betareg.R |only tests/testthat/test-biglm.R |only tests/testthat/test-bingroup.R |only tests/testthat/test-boot.R |only tests/testthat/test-btergm.R |only tests/testthat/test-decompose.R |only tests/testthat/test-dplyr.R | 83 ++++++++++---------- tests/testthat/test-ergm.R |only tests/testthat/test-felm.R |only tests/testthat/test-fitdistr.R |only tests/testthat/test-gam.R | 16 ++- tests/testthat/test-gamlss.R |only tests/testthat/test-geeglm.R |only tests/testthat/test-glance.R |only tests/testthat/test-glm.R |only tests/testthat/test-glmnet.R | 52 ++++++++++++ tests/testthat/test-gmm.R |only tests/testthat/test-htest.R |only tests/testthat/test-ivreg.R | 2 tests/testthat/test-kde.R |only tests/testthat/test-kmeans.R |only tests/testthat/test-list.R |only tests/testthat/test-lm.R | 6 + tests/testthat/test-lme4.R | 65 ++++++++++------ tests/testthat/test-lmodel2.R |only tests/testthat/test-lmtest.R |only tests/testthat/test-loess.R |only tests/testthat/test-lsmeans.R |only tests/testthat/test-map.R |only tests/testthat/test-matrix.R |only tests/testthat/test-mclust.R |only tests/testthat/test-mcmc.R |only tests/testthat/test-mle2.R |only tests/testthat/test-muhaz.R | 8 + tests/testthat/test-multcomp.R |only tests/testthat/test-multinom.R |only tests/testthat/test-nlme.R | 25 +++--- tests/testthat/test-nls.R |only tests/testthat/test-orcutt.R |only tests/testthat/test-plm.R |only tests/testthat/test-polca.R |only tests/testthat/test-prcomp.R |only tests/testthat/test-psych.R |only tests/testthat/test-ridgelm.R |only tests/testthat/test-rlm.R |only tests/testthat/test-robust.R |only tests/testthat/test-rq.R |only tests/testthat/test-rstanarm.R | 7 - tests/testthat/test-smooth.spline.R |only tests/testthat/test-sp.R |only tests/testthat/test-sparse.R |only tests/testthat/test-stats.R |only tests/testthat/test-survdiff.R | 2 tests/testthat/test-survival.R | 146 +++++++++++++++++++++++++++++++++++- tests/testthat/test-tidy.R | 45 +++++++++-- tests/testthat/test-zoo.R |only vignettes/kmeans.Rmd | 23 ++++- 83 files changed, 629 insertions(+), 226 deletions(-)
Title: Bayesian Structure Learning in Graphical Models using
Birth-Death MCMC
Description: Provides statistical tools for Bayesian structure learning in undirected graphical models for continuous, discrete, and mixed data. The package is implemented the recent improvements in the Bayesian graphical models literature, including Mohammadi and Wit (2015) <doi:10.1214/14-BA889> and Mohammadi et al. (2017) <doi:10.1111/rssc.12171>. To speed up the computations, the BDMCMC sampling algorithms are implemented in parallel using OpenMP in C++.
Author: Reza Mohammadi and Ernst Wit
Maintainer: Reza Mohammadi <a.mohammadi@uva.nl>
Diff between BDgraph versions 2.44 dated 2018-01-05 and 2.45 dated 2018-03-29
DESCRIPTION | 13 ++- MD5 | 56 ++++++++-------- R/hill_climb_binary.R | 4 - inst/CITATION | 8 +- man/BDgraph-package.Rd | 162 ++++++++++++++++++++++++------------------------- man/bdgraph.Rd | 2 man/bdgraph.mpl.Rd | 6 - man/bdgraph.npn.Rd | 2 man/bdgraph.sim.Rd | 2 man/bdgraph.ts.Rd | 2 man/compare.Rd | 2 man/gnorm.Rd | 2 man/pgraph.Rd | 2 man/plinks.Rd | 2 man/plot.bdgraph.Rd | 2 man/plot.sim.Rd | 2 man/plotcoda.Rd | 2 man/plotroc.Rd | 2 man/print.bdgraph.Rd | 2 man/print.sim.Rd | 2 man/rgcwish.Rd | 2 man/rgwish.Rd | 2 man/rwish.Rd | 2 man/select.Rd | 2 man/summary.bdgraph.Rd | 2 man/traceplot.Rd | 2 man/trensfer.Rd | 2 src/Makevars.in | 2 src/Makevars.win | 2 29 files changed, 146 insertions(+), 149 deletions(-)
Title: Test Analysis Modules
Description: Includes marginal maximum likelihood estimation and joint maximum
likelihood estimation for unidimensional and multidimensional
item response models. The package functionality covers the
Rasch model, 2PL model, 3PL model, generalized partial credit model,
multi-faceted Rasch model, nominal item response model,
structured latent class model, mixture distribution IRT models,
and located latent class models. Latent regression models and
plausible value imputation are also supported. For details see
Adams, Wilson and Wang, 1997 <doi:10.1177/0146621697211001>,
Adams, Wilson and Wu, 1997 <doi:10.3102/10769986022001047>,
Formann, 1982 <doi:10.1002/bimj.4710240209>,
Formann, 1992 <doi:10.1080/01621459.1992.10475229>.
Author: Alexander Robitzsch [aut, cre], Thomas Kiefer [aut], Margaret Wu [aut]
Maintainer: Alexander Robitzsch <robitzsch@ipn.uni-kiel.de>
Diff between TAM versions 2.9-35 dated 2018-02-26 and 2.10-24 dated 2018-03-29
TAM-2.10-24/TAM/DESCRIPTION | 8 TAM-2.10-24/TAM/MD5 | 86 ++-- TAM-2.10-24/TAM/NAMESPACE | 2 TAM-2.10-24/TAM/R/IRT.itemfit.R | 25 - TAM-2.10-24/TAM/R/plot.tam.R | 11 TAM-2.10-24/TAM/R/summary.tam.R | 5 TAM-2.10-24/TAM/R/tam.fa.R | 52 -- TAM-2.10-24/TAM/R/tam.jml.R | 12 TAM-2.10-24/TAM/R/tam.jml.fit.R | 205 ++++------ TAM-2.10-24/TAM/R/tam.latreg.R | 4 TAM-2.10-24/TAM/R/tam.mml.2pl.R | 4 TAM-2.10-24/TAM/R/tam.mml.3pl.R | 4 TAM-2.10-24/TAM/R/tam.mml.R | 18 TAM-2.10-24/TAM/R/tam.mml.mfr.R | 4 TAM-2.10-24/TAM/R/tam.personfit.R |only TAM-2.10-24/TAM/R/tam.pv.mcmc.R | 9 TAM-2.10-24/TAM/R/tam.wle.R | 4 TAM-2.10-24/TAM/R/tam_exp_overflow.R |only TAM-2.10-24/TAM/R/tam_fa_reliability_measures.R |only TAM-2.10-24/TAM/R/tam_jml_version1.R | 8 TAM-2.10-24/TAM/R/tam_jml_wle.R | 33 - TAM-2.10-24/TAM/R/tam_mml_compute_deviance.R | 4 TAM-2.10-24/TAM/R/tam_pv_mcmc_parameter_summary.R | 13 TAM-2.10-24/TAM/R/tam_pv_mcmc_theta_MH_ratio_accept.R | 5 TAM-2.10-24/TAM/inst/NEWS | 26 + TAM-2.10-24/TAM/man/IRT.itemfit.Rd | 38 + TAM-2.10-24/TAM/man/plot.tam.Rd | 8 TAM-2.10-24/TAM/man/tam.fa.Rd | 5 TAM-2.10-24/TAM/man/tam.fit.Rd | 17 TAM-2.10-24/TAM/man/tam.jml.Rd | 7 TAM-2.10-24/TAM/man/tam.mml.Rd | 47 ++ TAM-2.10-24/TAM/man/tam.personfit.Rd |only TAM-2.10-24/TAM/src/tam_calcexp_rcpp.cpp |only TAM-2.10-24/TAM/src/tam_ctt_rcpp.cpp |only TAM-2.10-24/TAM/src/tam_fit_simul_rcpp.cpp |only TAM-2.10-24/TAM/src/tam_helper_rcpp.cpp |only TAM-2.10-24/TAM/src/tam_irt_likelihood_cfa2_rcpp.cpp |only TAM-2.10-24/TAM/src/tam_mml_3pl_helper_rcpp.cpp |only TAM-2.10-24/TAM/src/tam_mml_mfr_helper_rcpp.cpp |only TAM-2.10-24/TAM/src/tam_modelfit_aux_rcpp.cpp |only TAM-2.10-24/TAM/src/tam_msq_itemfit_rcpp.cpp |only TAM-2.10-24/TAM/src/tam_prior_normal_density_rcpp.cpp |only TAM-2.10-24/TAM/src/tam_pv_mcmc_rcpp.cpp |only TAM-2.10-24/TAM/src/tam_pv_multivariate_normal_approximation_rcpp.cpp |only TAM-2.10-24/TAM/src/tam_rowcumsums_source_rcpp.cpp |only TAM-2.10-24/TAM/src/tam_wle_helper_rcpp.cpp |only TAM-2.9-35/TAM/src/irt_likelihood_cfa2.cpp |only TAM-2.9-35/TAM/src/msq_itemfit.cpp |only TAM-2.9-35/TAM/src/prior_normal_density_c.cpp |only TAM-2.9-35/TAM/src/rowcumsums_source.cpp |only TAM-2.9-35/TAM/src/tam_calcexp.cpp |only TAM-2.9-35/TAM/src/tam_ctt_c.cpp |only TAM-2.9-35/TAM/src/tam_fit_simul.cpp |only TAM-2.9-35/TAM/src/tam_helper_ccode.cpp |only TAM-2.9-35/TAM/src/tam_mml_3pl_helper_functions.cpp |only TAM-2.9-35/TAM/src/tam_mml_mfr_helper.cpp |only TAM-2.9-35/TAM/src/tam_modelfit_aux.cpp |only TAM-2.9-35/TAM/src/tam_pv_mcmc.cpp |only TAM-2.9-35/TAM/src/tam_pv_multivariate_normal_approximation.cpp |only TAM-2.9-35/TAM/src/tamwle_helper_ccode.cpp |only 60 files changed, 371 insertions(+), 293 deletions(-)
Title: Pedigree Inference from SNPs
Description: Fast multi-generational pedigree inference from incomplete data on
hundreds of SNPs, including parentage assignment and sibship clustering.
See citation('sequoia') for more information.
Author: Jisca Huisman [aut, cre]
Maintainer: Jisca Huisman <jisca.huisman@gmail.com>
Diff between sequoia versions 0.9.3 dated 2017-07-25 and 1.0.0 dated 2018-03-29
sequoia-0.9.3/sequoia/R/SimulateCompare.R |only sequoia-0.9.3/sequoia/man/Table.Rd |only sequoia-1.0.0/sequoia/DESCRIPTION | 12 sequoia-1.0.0/sequoia/MD5 | 85 sequoia-1.0.0/sequoia/NAMESPACE | 9 sequoia-1.0.0/sequoia/R/ComparePeds.R |only sequoia-1.0.0/sequoia/R/ConfProb.R |only sequoia-1.0.0/sequoia/R/Data_documentation.R | 31 sequoia-1.0.0/sequoia/R/FindFamilies.R |only sequoia-1.0.0/sequoia/R/GenoConvert.R | 140 sequoia-1.0.0/sequoia/R/MkAgePrior.R | 107 sequoia-1.0.0/sequoia/R/Prepare.R |only sequoia-1.0.0/sequoia/R/SNPstats.R |only sequoia-1.0.0/sequoia/R/Sequoia_F90wrappers.R | 211 sequoia-1.0.0/sequoia/R/Sequoia_Main.R | 125 sequoia-1.0.0/sequoia/R/Simulate.R |only sequoia-1.0.0/sequoia/R/Utils.R | 84 sequoia-1.0.0/sequoia/R/Utils_hermaphrodites.R | 13 sequoia-1.0.0/sequoia/R/WriteToFiles.R |only sequoia-1.0.0/sequoia/build/vignette.rds |binary sequoia-1.0.0/sequoia/cleanup | 2 sequoia-1.0.0/sequoia/inst/CITATION | 5 sequoia-1.0.0/sequoia/inst/Fortran/sequoia.f90 | 6583 +++++++++++++++++-------- sequoia-1.0.0/sequoia/inst/doc/sequoia.R | 302 - sequoia-1.0.0/sequoia/inst/doc/sequoia.Rnw | 422 + sequoia-1.0.0/sequoia/inst/doc/sequoia.pdf |binary sequoia-1.0.0/sequoia/man/DyadCompare.Rd | 33 sequoia-1.0.0/sequoia/man/EstConf.Rd |only sequoia-1.0.0/sequoia/man/FindFamilies.Rd |only sequoia-1.0.0/sequoia/man/GenoConvert.Rd | 48 sequoia-1.0.0/sequoia/man/LHConvert.Rd |only sequoia-1.0.0/sequoia/man/LH_HSg5.Rd | 16 sequoia-1.0.0/sequoia/man/MakeAgeprior.Rd | 59 sequoia-1.0.0/sequoia/man/Merge.Rd |only sequoia-1.0.0/sequoia/man/PedCompare.Rd | 62 sequoia-1.0.0/sequoia/man/PedStripFID.Rd |only sequoia-1.0.0/sequoia/man/Ped_HSg5.Rd | 13 sequoia-1.0.0/sequoia/man/SeqDup.Rd | 13 sequoia-1.0.0/sequoia/man/SeqParSib.Rd | 6 sequoia-1.0.0/sequoia/man/SeqPrep.Rd | 16 sequoia-1.0.0/sequoia/man/SibMatch.Rd |only sequoia-1.0.0/sequoia/man/SimGeno.Rd | 54 sequoia-1.0.0/sequoia/man/SimGeno_example.Rd | 12 sequoia-1.0.0/sequoia/man/SnpStats.Rd |only sequoia-1.0.0/sequoia/man/Vcomp.Rd |only sequoia-1.0.0/sequoia/man/orderLH.Rd | 2 sequoia-1.0.0/sequoia/man/rc.Rd | 4 sequoia-1.0.0/sequoia/man/sequoia.Rd | 89 sequoia-1.0.0/sequoia/man/writeColumns.Rd |only sequoia-1.0.0/sequoia/man/writeSeq.Rd |only sequoia-1.0.0/sequoia/src/init.c | 26 sequoia-1.0.0/sequoia/src/sequoia.f90 | 6579 +++++++++++++++++------- sequoia-1.0.0/sequoia/vignettes/sequoia.Rnw | 422 + 53 files changed, 10808 insertions(+), 4777 deletions(-)
Title: An 'Rcpp' Interface to Active Bindings
Description: Provides an easy way to fill an environment with active bindings
that call a C++ function.
Author: Kirill Müller [aut, cre] (<https://orcid.org/0000-0002-1416-3412>),
RStudio [cph]
Maintainer: Kirill Müller <krlmlr+r@mailbox.org>
Diff between bindrcpp versions 0.2 dated 2017-06-17 and 0.2.2 dated 2018-03-29
DESCRIPTION | 26 +- MD5 | 22 - NEWS.md | 7 R/RcppExports.R | 22 + README.md | 8 inst/include/bindrcpp_RcppExports.h | 170 ++++++++++++++ inst/include/bindrcpp_types.h | 42 ++- man/reexports.Rd | 1 src/RcppExports.cpp | 410 ++++++++++++++++++++++++++++++++---- src/create.cpp | 85 ++++++- src/test.cpp | 51 ++-- tests/testthat/test-create.R | 9 12 files changed, 721 insertions(+), 132 deletions(-)
Title: Infrastructure for Computing with Basis Functions
Description: Some very simple infrastructure for basis functions.
Author: Torsten Hothorn [aut, cre] (<https://orcid.org/0000-0001-8301-0471>)
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between basefun versions 1.0-0 dated 2018-03-08 and 1.0-1 dated 2018-03-29
DESCRIPTION | 10 +++++----- MD5 | 8 ++++---- R/bernstein.R | 2 +- R/utils.R | 2 +- inst/NEWS.Rd | 7 +++++++ 5 files changed, 18 insertions(+), 11 deletions(-)
Title: Correlation and Regression Analyses for Randomized Response Data
Description: Univariate and multivariate methods to analyze randomized response
(RR) survey designs (e.g., Warner, S. L. (1965). Randomized response: A
survey technique for eliminating evasive answer bias. Journal of the
American Statistical Association, 60, 63–69). <doi:10.2307/2283137>
Besides univariate estimates of true proportions, RR variables can be used
for correlations, as dependent variable in a logistic regression (with or
without random effects), as predictors in a linear regression, or as
dependent variable in a beta-binomial ANOVA. For simulation and bootstrap
purposes, RR data can be generated according to several models.
Author: Daniel W. Heck [aut, cre],
Morten Moshagen [aut]
Maintainer: Daniel W. Heck <heck@uni-mannheim.de>
Diff between RRreg versions 0.6.5 dated 2018-02-11 and 0.6.6 dated 2018-03-29
DESCRIPTION | 8 +-- MD5 | 18 +++---- NEWS | 6 ++ R/RRlog.R | 41 +++++++++++++---- R/RRlog_fit.R | 16 +++--- R/RRreg-package.R | 8 ++- build/vignette.rds |binary inst/doc/RRreg.html | 120 +++++++++++++++++++++++++-------------------------- man/RRreg-package.Rd | 10 +++- man/predict.RRlog.Rd | 22 +++++++-- 10 files changed, 149 insertions(+), 100 deletions(-)
Title: 64-Bit Extension of the SPArse Matrix R Package 'spam'
Description: Provides the Fortran code of the R package 'spam'
with 64-bit integers. Loading this package together with the R package
spam enables the sparse matrix class spam to handle huge sparse matrices
with more than 2^31-1 non-zero elements.
Author: Reinhard Furrer [aut, cre],
Florian Gerber [ctb],
Daniel Gerber [ctb],
Kaspar Moesinger [ctb],
Youcef Saad [ctb] (SPARSEKIT
http://www-users.cs.umn.edu/~saad/software/SPARSKIT/),
Esmond G. Ng [ctb] (Fortran Cholesky routines),
Barry W. Peyton [ctb] (Fortran Cholesky routines),
Joseph W.H. Liu [ctb] (Fortran Cholesky routines),
Alan D. George [ctb] (Fortran Cholesky routines)
Maintainer: Reinhard Furrer <reinhard.furrer@math.uzh.ch>
Diff between spam64 versions 2.1-2 dated 2017-12-21 and 2.1-3 dated 2018-03-29
DESCRIPTION | 12 ++++++------ MD5 | 2 +- 2 files changed, 7 insertions(+), 7 deletions(-)
Title: IUCN Redlisting Tools
Description: Includes algorithms to facilitate the assessment of extinction
risk of species according to the IUCN (International Union for Conservation of
Nature, see <http://www.iucn.org> for more information) red list criteria.
Author: Pedro Cardoso
Maintainer: Pedro Cardoso <pedro.cardoso@helsinki.fi>
Diff between red versions 1.3.1 dated 2018-01-23 and 1.3.3 dated 2018-03-29
DESCRIPTION | 10 ++--- MD5 | 10 ++--- NAMESPACE | 1 R/red.R | 98 +++++++++++++++++++++++++++++++++++++++++++++--------- man/kml.Rd | 5 ++ man/red.setDir.Rd | 5 ++ 6 files changed, 101 insertions(+), 28 deletions(-)
Title: Thresholds and Invariant Intervals for Network Meta-Analysis
Description: Calculation and presentation of decision-invariant bias adjustment
thresholds and intervals for Network Meta-Analysis, as described by
Phillippo et al. (2017) <doi:10.1111/rssa.12341>. These describe the
smallest changes to the data that would result in a change of decision.
Author: David Phillippo [aut, cre]
Maintainer: David Phillippo <david.phillippo@bristol.ac.uk>
Diff between nmathresh versions 0.1.2 dated 2018-02-15 and 0.1.3 dated 2018-03-29
DESCRIPTION | 6 +++--- MD5 | 18 +++++++++--------- NEWS.md | 5 +++++ R/nma_thresh.R | 14 ++++++++++++-- R/thresh_forest.R | 4 ++-- build/vignette.rds |binary inst/doc/Examples.Rmd | 2 +- inst/doc/Examples.html | 18 +++++++++--------- man/nma_thresh.Rd | 5 ++--- vignettes/Examples.Rmd | 2 +- 10 files changed, 44 insertions(+), 30 deletions(-)
Title: Machine Learning in R
Description: Interface to a large number of classification and regression
techniques, including machine-readable parameter descriptions. There is
also an experimental extension for survival analysis, clustering and
general, example-specific cost-sensitive learning. Generic resampling,
including cross-validation, bootstrapping and subsampling. Hyperparameter
tuning with modern optimization techniques, for single- and multi-objective
problems. Filter and wrapper methods for feature selection. Extension of
basic learners with additional operations common in machine learning, also
allowing for easy nested resampling. Most operations can be parallelized.
Author: Bernd Bischl [aut, cre],
Michel Lang [aut],
Lars Kotthoff [aut],
Julia Schiffner [aut],
Jakob Richter [aut],
Zachary Jones [aut],
Giuseppe Casalicchio [aut],
Mason Gallo [aut],
Jakob Bossek [ctb],
Erich Studerus [ctb],
Leonard Judt [ctb],
Tobias Kuehn [ctb],
Pascal Kerschke [ctb],
Florian Fendt [ctb],
Philipp Probst [ctb],
Xudong Sun [ctb],
Janek Thomas [ctb],
Bruno Vieira [ctb],
Laura Beggel [ctb],
Quay Au [ctb],
Martin Binder [ctb],
Florian Pfisterer [ctb],
Stefan Coors [ctb],
Patrick Schratz [ctb],
Steve Bronder [ctb]
Maintainer: Bernd Bischl <bernd_bischl@gmx.net>
Diff between mlr versions 2.12 dated 2018-03-10 and 2.12.1 dated 2018-03-29
DESCRIPTION | 6 +++--- MD5 | 4 ++-- tests/testthat/test_base_generateFilterValuesData.R | 2 +- 3 files changed, 6 insertions(+), 6 deletions(-)
Title: Case-Wise and Cluster-Wise Derivatives for Mixed Effects Models
Description: Compute analytic case-wise and cluster-wise derivatives for mixed effects models with respect to fixed effect parameters, random effect (co)variances, and residual variances.
Author: Ting Wang [aut, cre],
Edgar Merkle [aut]
Maintainer: Ting Wang <twb8d@mail.missouri.edu>
Diff between merDeriv versions 0.1-3 dated 2018-02-13 and 0.1-4 dated 2018-03-29
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/vcov.lmerMod.R | 2 +- man/vcov.lmerMod.Rd | 9 +++++---- 4 files changed, 12 insertions(+), 11 deletions(-)
Title: A Lightweight Interface for Interacting with Elasticsearch from
R
Description: A lightweight R interface to 'Elasticsearch' - a NoSQL search-engine and
column store database (see <https://www.elastic.co/products/elasticsearch> for more
information). This package implements a simple Domain-Specific Language (DSL) for indexing,
deleting, querying, sorting and aggregating data using 'Elasticsearch'.
Author: Alex Ioannides
Maintainer: Alex Ioannides <alex.ioannides@yahoo.co.uk>
Diff between elasticsearchr versions 0.2.1 dated 2018-01-02 and 0.2.2 dated 2018-03-29
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NEWS.md | 5 +++++ R/utils.R | 2 +- inst/doc/quick_start.html | 4 ++-- tests/testthat/test-utils.R | 11 +++++++++++ 6 files changed, 28 insertions(+), 12 deletions(-)
More information about elasticsearchr at CRAN
Permanent link
Title: Using Tip Dates with Phylogenetic Trees in BEAST (Software for
Phylogenetic Analysis)
Description: Assist performing tip-dating of phylogenetic trees with BEAST.
Author: Adrien Rieux, Camilo Khatchikian
Maintainer: Camilo Khatchikian <ckhatchikian@gmail.com>
Diff between TipDatingBeast versions 1.0-7 dated 2018-01-30 and 1.0-8 dated 2018-03-29
DESCRIPTION | 8 ++++---- MD5 | 18 +++++++++--------- R/ListTaxa.R | 4 ++-- R/Plot_LOOCV.R | 4 ++-- R/RandomCluster.R | 4 ++-- R/RandomDates.R | 4 ++-- R/TaxaOut.R | 4 ++-- R/TaxonOut.R | 4 ++-- inst/example/Tutorial_TipDatingBEAST.pdf |binary man/TipDatingBeast-package.Rd | 2 +- 10 files changed, 26 insertions(+), 26 deletions(-)
More information about TipDatingBeast at CRAN
Permanent link
Title: Survival Trees to Fit Left-Truncated and Right-Censored and
Interval-Censored Survival Data
Description: Recursive partition algorithms designed for fitting survival tree with left-truncated and right censored (LTRC) data, as well as interval-censored data.
The LTRC trees can also be used to fit survival tree with time-varying covariates.
Author: Wei Fu [aut, cre],
Jeffrey Simonoff [aut]
Maintainer: Wei Fu <weifu.scott@gmail.com>
Diff between LTRCtrees versions 1.0.0 dated 2018-01-06 and 1.1.0 dated 2018-03-29
DESCRIPTION | 10 +++++----- MD5 | 20 ++++++++++---------- R/ICtree.R | 16 +++++++++------- R/LTRCART.R | 2 +- R/LTRCIT.R | 2 +- inst/doc/LTRCtrees.Rmd | 4 ++-- inst/doc/LTRCtrees.html | 14 +++++++------- man/ICtree.Rd | 6 +++--- man/LTRCART.Rd | 2 +- man/LTRCIT.Rd | 2 +- vignettes/LTRCtrees.Rmd | 4 ++-- 11 files changed, 42 insertions(+), 40 deletions(-)
Title: Segmentation and Classification of Accelerometer Data
Description: Segmentation and classification procedures for data from the 'Activinsights GENEActiv' <https://www.activinsights.com/products/geneactiv/> accelerometer that provides the user with a model to guess behaviour from test data where behaviour is missing.
Includes a step counting algorithm, a function to create segmented data with custom features and a function to use recursive partitioning provided in the function rpart() of the 'rpart' package to create classification models.
Author: Chris Campbell [aut],
Aimee Gott [aut],
Joss Langford [aut],
Charles Sweetland [aut, cre],
Activinsights Ltd [cph]
Maintainer: Charles Sweetland <charles@sweetland-solutions.co.uk>
Diff between GENEAclassify versions 1.4.9 dated 2018-02-13 and 1.4.11 dated 2018-03-29
DESCRIPTION | 8 ++++---- MD5 | 20 ++++++++++---------- R/classifyGENEA.R | 13 ++++++++++++- R/dataImport.R | 10 ++++------ R/getGENEAsegments.R | 14 +++++++++----- R/segmentation.R | 2 +- R/stepCounter.R | 5 +++-- inst/doc/GENEAclassifyDemo.html | 40 ++++++++++++++++++++-------------------- man/classifyGENEA.Rd | 29 +++++++++++++++++------------ man/dataImport.Rd | 5 +---- man/getGENEAsegments.Rd | 14 +++++++++----- 11 files changed, 90 insertions(+), 70 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-03-25 1.1
2017-03-30 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-03-20 2018.3-20
2018-01-04 2018.1-3
2018-01-03 2017.12-26
2017-12-03 2017.12-3
2017-10-09 2017.10-9
2017-08-28 2017.08-28
2016-07-31 2016.7-31
2016-07-10 2016.7-9
2015-09-09 2015.9-5
2014-12-05 2014.12-2
2014-05-29 2014.5-29
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-03-27 1.13