Title: Maximum Likelihood Shrinkage via Generalized Ridge or Least
Angle Regression
Description: Identify and display TRACEs for a specified shrinkage path and determine
the extent of shrinkage most likely, under normal distribution theory, to produce an
optimal reduction in MSE Risk in estimates of regression (beta) coefficients.
Author: Bob Obenchain
Maintainer: Bob Obenchain <wizbob@att.net>
Diff between RXshrink versions 1.0-8 dated 2014-01-14 and 1.0-9 dated 2018-04-08
RXshrink-1.0-8/RXshrink/inst |only RXshrink-1.0-9/RXshrink/DESCRIPTION | 16 +++++------ RXshrink-1.0-9/RXshrink/MD5 | 23 +++++++--------- RXshrink-1.0-9/RXshrink/NAMESPACE | 34 ++++++++++++------------ RXshrink-1.0-9/RXshrink/data/haldport.rda |binary RXshrink-1.0-9/RXshrink/data/longley2.rda |binary RXshrink-1.0-9/RXshrink/data/mpg.rda |binary RXshrink-1.0-9/RXshrink/man/RXlarlso.Rd | 10 +++---- RXshrink-1.0-9/RXshrink/man/RXridge.Rd | 23 +++++++++------- RXshrink-1.0-9/RXshrink/man/RXshrink-package.Rd | 28 +++++++++++-------- RXshrink-1.0-9/RXshrink/man/RXtrisk.Rd | 3 -- RXshrink-1.0-9/RXshrink/man/RXtsimu.Rd | 4 +- RXshrink-1.0-9/RXshrink/man/RXuclars.Rd | 10 +++---- 13 files changed, 79 insertions(+), 72 deletions(-)
Title: Tools to Download and Work with USDA Cropscape Data
Description: Downloads USDA National Agricultural Statistics Service (NASS)
cropscape data for a specified state. Utilities for fips, abbreviation,
and name conversion are also provided. Full functionality requires an
internet connection, but data sets can be cached for later off-line use.
Author: Jonathan Lisic [cre],
Lu Chen [aut],
Joseph Stachelek [ctb]
Maintainer: Jonathan Lisic <jlisic@gmail.com>
Diff between cdlTools versions 0.11 dated 2016-08-01 and 0.13 dated 2018-04-08
cdlTools-0.11/cdlTools/man/cdlTools-package.Rd |only cdlTools-0.13/cdlTools/DESCRIPTION | 23 ++++-- cdlTools-0.13/cdlTools/MD5 | 54 +++++++-------- cdlTools-0.13/cdlTools/NAMESPACE | 12 ++- cdlTools-0.13/cdlTools/R/createComparableCDL.R |only cdlTools-0.13/cdlTools/R/fips.R | 17 +++- cdlTools-0.13/cdlTools/R/getCDL.R | 79 +++++++++++++++------- cdlTools-0.13/cdlTools/R/matchCount.R | 3 cdlTools-0.13/cdlTools/R/updateNamesCDL.R | 1 cdlTools-0.13/cdlTools/man/census2010FIPS.Rd | 1 cdlTools-0.13/cdlTools/man/corn.Rd | 1 cdlTools-0.13/cdlTools/man/cotton.Rd | 1 cdlTools-0.13/cdlTools/man/createComparableCDL.Rd |only cdlTools-0.13/cdlTools/man/cultivated.Rd | 1 cdlTools-0.13/cdlTools/man/durumWheat.Rd | 1 cdlTools-0.13/cdlTools/man/fips.Rd | 6 + cdlTools-0.13/cdlTools/man/getCDL.Rd | 17 ++++ cdlTools-0.13/cdlTools/man/matchCount.Rd | 4 - cdlTools-0.13/cdlTools/man/nothing.Rd | 1 cdlTools-0.13/cdlTools/man/pasture.Rd | 1 cdlTools-0.13/cdlTools/man/projCDL.Rd | 1 cdlTools-0.13/cdlTools/man/soybeans.Rd | 1 cdlTools-0.13/cdlTools/man/springWheat.Rd | 1 cdlTools-0.13/cdlTools/man/stateNames.Rd | 1 cdlTools-0.13/cdlTools/man/updateNamesCDL.Rd | 4 - cdlTools-0.13/cdlTools/man/varNamesCDL.Rd | 1 cdlTools-0.13/cdlTools/man/water.Rd | 1 cdlTools-0.13/cdlTools/man/winterWheat.Rd | 1 cdlTools-0.13/cdlTools/src/matchCount.c | 5 - cdlTools-0.13/cdlTools/src/matchCount.h |only 30 files changed, 148 insertions(+), 91 deletions(-)
Title: Wrapper for 'GDAX' Cryptocurrency Exchange
Description: Allow access to both public and private end points to 'GDAX' cryptocurrency exchange.
For authenticated flow, users must have valid api, secret and passphrase to be able to connect.
Read more details on getting access to 'GDAX' API at:
<https://support.gdax.com/customer/en/portal/articles/2425383-how-can-i-create-an-api-key-for-gdax->.
Author: person("Dheeraj", "Agarwal", email = "dheeeraj.agarwal@gmail.com",
role = c("aut", "cre"))
Maintainer: Dheeraj Agarwal <dheeeraj.agarwal@gmail.com>
Diff between rgdax versions 0.4.0 dated 2018-02-19 and 0.5.0 dated 2018-04-08
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 14 ++++++++++++-- R/add_order.R | 26 ++++++++++++++++++-------- README.md | 2 +- 5 files changed, 38 insertions(+), 18 deletions(-)
Title: Depth-Based Classification and Calculation of Data Depth
Description: Contains procedures for depth-based supervised learning, which are entirely non-parametric, in particular the DDalpha-procedure (Lange, Mosler and Mozharovskyi, 2014 <doi:10.1007/s00362-012-0488-4>). The training data sample is transformed by a statistical depth function to a compact low-dimensional space, where the final classification is done. It also offers an extension to functional data and routines for calculating certain notions of statistical depth functions. 50 multivariate and 5 functional classification problems are included.
Author: Oleksii Pokotylo [aut, cre],
Pavlo Mozharovskyi [aut],
Rainer Dyckerhoff [aut],
Stanislav Nagy [aut]
Maintainer: Oleksii Pokotylo <alexey.pokotylo@gmail.com>
Diff between ddalpha versions 1.3.1.1 dated 2018-02-02 and 1.3.2 dated 2018-04-08
DESCRIPTION | 12 ++--- MD5 | 22 ++++++---- NAMESPACE | 99 +++++++++++++++++++++++----------------------- R/depth.L2.r |only R/depth.betaSkeleton.r |only R/depth.qhpeeling.r |only man/ddalpha-package.Rd | 4 - man/depth.L2.Rd |only man/depth.betaSkeleton.Rd |only man/depth.qhpeeling.Rd |only src/LensDepth.cpp |only src/LensDepth.h |only src/ZonoidDepth.cpp | 2 src/ddalpha.cpp | 11 +++++ src/init.c | 2 src/stdafx.h | 2 16 files changed, 88 insertions(+), 66 deletions(-)
Title: Spatial Methods and Indices
Description: Functions for spatial methods based on generalized estimating equations (GEE) and
wavelet-revised methods (WRM), functions for scaling by wavelet multiresolution regression (WMRR),
conducting multi-model inference, and stepwise model selection. Further, contains functions
for spatially corrected model accuracy measures.
Author: Gudrun Carl [cre, aut], Ingolf Kuehn [aut], Sam Levin [aut]
Maintainer: Sam Levin <levisc8@gmail.com>
Diff between spind versions 2.1.2 dated 2018-01-04 and 2.1.3 dated 2018-04-08
DESCRIPTION | 6 +++--- MD5 | 6 +++--- inst/CITATION | 19 ++++++++++++++++++- inst/doc/spind_vignette.html | 5 +++-- 4 files changed, 27 insertions(+), 9 deletions(-)
Title: Robust Estimation for Compositional Data
Description: Methods for analysis of compositional data including robust
methods, imputation, methods to replace rounded zeros, (robust) outlier
detection for compositional data, (robust) principal component analysis for
compositional data, (robust) factor analysis for compositional data, (robust)
discriminant analysis for compositional data (Fisher rule), robust regression
with compositional predictors and (robust) Anderson-Darling normality tests for
compositional data as well as popular log-ratio transformations (addLR, cenLR,
isomLR, and their inverse transformations). In addition, visualisation and
diagnostic tools are implemented as well as high and low-level plot functions
for the ternary diagram.
Author: Matthias Templ [aut, cre],
Karel Hron [aut],
Peter Filzmoser [aut],
Petra Kynclova [ctb],
Jan Walach [ctb],
Veronika Pintar [ctb],
Jiajia Chen [ctb]
Maintainer: Matthias Templ <matthias.templ@gmail.com>
Diff between robCompositions versions 2.0.6 dated 2017-08-14 and 2.0.7 dated 2018-04-08
DESCRIPTION | 26 +++ MD5 | 44 +++--- NAMESPACE | 3 NEWS | 10 + R/addLR.R | 1 R/daFisher.R | 20 +-- R/dataSets.R | 5 R/impAll.R | 1 R/imputeBDLs.R | 225 ++++++++++++++++++++++++++++++---- R/plot.imp.R | 3 R/ternaryDiag.R | 3 inst/doc/imputation.pdf |binary inst/doc/robCompositions-overview.pdf |binary man/daFisher.Rd | 10 - man/employment.Rd | 3 man/employment_df.Rd | 3 man/impAll.Rd | 3 man/imputeBDLs.Rd | 40 +++++- man/instw.Rd | 3 man/isic32.Rd | 3 man/plot.imp.Rd | 3 man/rcodes.Rd | 3 man/ternaryDiag.Rd | 3 23 files changed, 314 insertions(+), 101 deletions(-)
More information about robCompositions at CRAN
Permanent link
Title: Influence Measures and Diagnostic Plots for Multivariate Linear
Models
Description: Computes regression deletion diagnostics for multivariate linear models and provides some associated
diagnostic plots. The diagnostic measures include hat-values (leverages), generalized Cook's distance, and
generalized squared 'studentized' residuals. Several types of plots to detect influential observations are
provided.
Author: Michael Friendly
Maintainer: Michael Friendly <friendly@yorku.ca>
Diff between mvinfluence versions 0.8 dated 2016-06-13 and 0.8-1 dated 2018-04-08
DESCRIPTION | 13 +++++-------- MD5 | 18 +++++++++--------- NAMESPACE | 1 + NEWS | 4 ++++ R/influencePlot.mlm.R | 12 ++++++------ R/lrPlot.R | 4 ++-- data/Fertilizer.RData |binary man/infIndexPlot.mlm.Rd | 2 +- man/influencePlot.mlm.Rd | 4 ++++ man/lrPlot.Rd | 2 +- 10 files changed, 33 insertions(+), 27 deletions(-)
Title: Precision of Discrete Parameters in Transdimensional MCMC
Description: Estimates the precision of transdimensional Markov chain Monte Carlo
(MCMC) output, which is often used for Bayesian analysis of models with different
dimensionality (e.g., model selection). Transdimensional MCMC (e.g., reversible
jump MCMC) relies on sampling a discrete model-indicator variable to estimate
the posterior model probabilities. If only few switches occur between the models,
precision may be low and assessment based on the assumption of independent
samples misleading. Based on the observed transition matrix of the indicator
variable, the method of Heck, Overstall, Gronau, & Wagenmakers (2017)
<arXiv:1703.10364> draws posterior samples of the stationary
distribution to (a) assess the uncertainty in the estimated posterior model
probabilities and (b) estimate the effective sample size of the MCMC output.
Author: Daniel W. Heck [aut, cre]
Maintainer: Daniel W. Heck <heck@uni-mannheim.de>
Diff between MCMCprecision versions 0.3.7 dated 2017-08-04 and 0.3.8 dated 2018-04-08
MCMCprecision-0.3.7/MCMCprecision/R/sim_mc.R |only MCMCprecision-0.3.7/MCMCprecision/R/table_mc.R |only MCMCprecision-0.3.7/MCMCprecision/man/best.k.Rd |only MCMCprecision-0.3.7/MCMCprecision/man/dirichlet.mle.Rd |only MCMCprecision-0.3.7/MCMCprecision/man/sim.mc.Rd |only MCMCprecision-0.3.7/MCMCprecision/man/stationary.mle.Rd |only MCMCprecision-0.3.7/MCMCprecision/man/table.mc.Rd |only MCMCprecision-0.3.7/MCMCprecision/src/sim_mc.cpp |only MCMCprecision-0.3.8/MCMCprecision/DESCRIPTION | 9 MCMCprecision-0.3.8/MCMCprecision/MD5 | 68 +- MCMCprecision-0.3.8/MCMCprecision/NAMESPACE | 13 MCMCprecision-0.3.8/MCMCprecision/NEWS | 9 MCMCprecision-0.3.8/MCMCprecision/R/MCMCprecision.R | 19 MCMCprecision-0.3.8/MCMCprecision/R/RcppExports.R | 28 - MCMCprecision-0.3.8/MCMCprecision/R/best_k.R | 9 MCMCprecision-0.3.8/MCMCprecision/R/dirichlet_mle.R | 29 - MCMCprecision-0.3.8/MCMCprecision/R/posterior_sample.R | 20 MCMCprecision-0.3.8/MCMCprecision/R/rdirichlet.R | 5 MCMCprecision-0.3.8/MCMCprecision/R/rmarkov.R |only MCMCprecision-0.3.8/MCMCprecision/R/stationary.R | 241 +++++----- MCMCprecision-0.3.8/MCMCprecision/R/stationary_mle.R | 28 - MCMCprecision-0.3.8/MCMCprecision/R/summary.R | 45 + MCMCprecision-0.3.8/MCMCprecision/R/transitions.R |only MCMCprecision-0.3.8/MCMCprecision/inst/include/MCMCprecision.h | 15 MCMCprecision-0.3.8/MCMCprecision/man/MCMCprecision-package.Rd | 15 MCMCprecision-0.3.8/MCMCprecision/man/best_models.Rd |only MCMCprecision-0.3.8/MCMCprecision/man/fit_dirichlet.Rd |only MCMCprecision-0.3.8/MCMCprecision/man/rdirichlet.Rd | 2 MCMCprecision-0.3.8/MCMCprecision/man/rmarkov.Rd |only MCMCprecision-0.3.8/MCMCprecision/man/stationary.Rd | 88 ++- MCMCprecision-0.3.8/MCMCprecision/man/stationary_mle.Rd |only MCMCprecision-0.3.8/MCMCprecision/man/summary.stationary.Rd | 29 - MCMCprecision-0.3.8/MCMCprecision/man/transitions.Rd |only MCMCprecision-0.3.8/MCMCprecision/src/Makevars | 6 MCMCprecision-0.3.8/MCMCprecision/src/RcppExports.cpp | 69 ++ MCMCprecision-0.3.8/MCMCprecision/src/dirichlet_minka.cpp | 1 MCMCprecision-0.3.8/MCMCprecision/src/init.c | 24 MCMCprecision-0.3.8/MCMCprecision/src/stationary.cpp | 184 +++++-- MCMCprecision-0.3.8/MCMCprecision/src/stationary_Eigen.cpp | 9 MCMCprecision-0.3.8/MCMCprecision/src/stationary_mle.cpp | 8 MCMCprecision-0.3.8/MCMCprecision/tests |only 41 files changed, 612 insertions(+), 361 deletions(-)
Title: Simpler Appearance Modification of 'ggplot2'
Description: A flexible interface for ggplot2::theme(), potentially saving 50% of your typing.
Author: Yasutaka Tanaka [aut, cre]
Maintainer: Yasutaka Tanaka <tnk.yasutaka@gmail.com>
Diff between ggconf versions 0.1 dated 2017-08-29 and 0.1.3 dated 2018-04-08
DESCRIPTION | 13 +-- MD5 | 48 ++++++------- R/approx_match.R | 4 + R/compiler.R | 27 +------ R/ggconf.R | 5 + R/prefix_match.R | 1 README.md | 125 ++++++++++++++++++----------------- build/vignette.rds |binary inst/doc/Introduction-to-ggconf.Rmd | 2 inst/doc/Introduction-to-ggconf.html | 26 +++---- man/compile_ggconf.Rd | 1 man/define_ggconf_constants.Rd | 1 man/exec_ggconf.Rd | 1 man/find_first_index.Rd | 1 man/get_all_theme_aes.Rd | 1 man/get_analogue.Rd | 5 + man/get_element_tree_clone.Rd | 1 man/get_theme_elem_name_conf.Rd | 1 man/ggconf_dbgmsg.Rd | 1 man/remove_element_whatever.Rd | 1 man/replace_marks.Rd | 1 man/show_fixit_diagnostics.Rd | 1 man/theme2.Rd | 6 + tests/testthat/test-theme2.R | 28 +++++++ vignettes/Introduction-to-ggconf.Rmd | 2 25 files changed, 161 insertions(+), 142 deletions(-)
Title: Create Interactive Web Maps with the 'JavaScript Datamaps'
Library
Description: Easily create interactive choropleth maps then add bubbles and arcs by coordinates or region name.
These maps can be used directly from the console, from 'RStudio', in 'Shiny' apps and 'R Markdown' documents. 'Shiny'
proxies allow to interactively add arcs and bubbles, change choropleth values, or change labels.
Author: John Coene [aut, cre]
Maintainer: John Coene <jcoenep@gmail.com>
Diff between datamaps versions 0.0.1 dated 2018-03-01 and 0.0.2 dated 2018-04-08
DESCRIPTION | 9 ++++---- MD5 | 23 ++++++++++++++-------- NAMESPACE | 1 NEWS.md |only R/datamaps.R | 17 +++++++++------- R/opts.R | 44 ++++++++++++++++++++++++++++++++++++++++++- README.md | 13 +++++++++--- build |only inst/doc |only inst/htmlwidgets/datamaps.js | 33 ++++++++++++++++++++++++-------- man/config_geo.Rd | 5 +++- man/datamaps.Rd | 4 +-- man/set_projection.Rd |only vignettes |only 14 files changed, 115 insertions(+), 34 deletions(-)
Title: Statistical Methods for Regional Counts
Description: Implements statistical methods for analyzing the counts of areal data,
with a focus on the detection of spatial clusters and clustering.
Author: Joshua French
Maintainer: Joshua French <joshua.french@ucdenver.edu>
Diff between smerc versions 0.2.2 dated 2015-11-12 and 0.4.3 dated 2018-04-08
smerc-0.2.2/smerc/tests/flex_out.ed$ |only smerc-0.2.2/smerc/tests/flex_out.fl$ |only smerc-0.2.2/smerc/tests/flex_out.la$ |only smerc-0.2.2/smerc/tests/flex_out.no$ |only smerc-0.4.3/smerc/DESCRIPTION | 18 smerc-0.4.3/smerc/MD5 | 102 ++- smerc-0.4.3/smerc/NAMESPACE | 63 +- smerc-0.4.3/smerc/R/bn.test.R |only smerc-0.4.3/smerc/R/casewin.R |only smerc-0.4.3/smerc/R/color.clusters.R | 60 +- smerc-0.4.3/smerc/R/dmst.test.R |only smerc-0.4.3/smerc/R/dmst.zones.R |only smerc-0.4.3/smerc/R/dmst_max_zone.R |only smerc-0.4.3/smerc/R/dmst_zones_internal.R |only smerc-0.4.3/smerc/R/dweights.R |only smerc-0.4.3/smerc/R/flex.test.R | 245 ++++----- smerc-0.4.3/smerc/R/flex.zones.R | 182 +++--- smerc-0.4.3/smerc/R/mlf.test.R |only smerc-0.4.3/smerc/R/mlf.zones.R |only smerc-0.4.3/smerc/R/nydf.R | 36 - smerc-0.4.3/smerc/R/nypoly.R | 18 smerc-0.4.3/smerc/R/nyw.R | 20 smerc-0.4.3/smerc/R/plot.scan.R | 158 +++-- smerc-0.4.3/smerc/R/plot.tango.R |only smerc-0.4.3/smerc/R/scan.stat.R | 61 +- smerc-0.4.3/smerc/R/scan.test.R | 522 +++++++++---------- smerc-0.4.3/smerc/R/scan.zones.R |only smerc-0.4.3/smerc/R/tango.stat.R |only smerc-0.4.3/smerc/R/tango.test.R |only smerc-0.4.3/smerc/R/uls.test.R | 331 ++++++------ smerc-0.4.3/smerc/R/uls.zones.R | 118 ++-- smerc-0.4.3/smerc/man/bn.test.Rd |only smerc-0.4.3/smerc/man/casewin.Rd |only smerc-0.4.3/smerc/man/color.clusters.Rd | 65 +- smerc-0.4.3/smerc/man/dmst.test.Rd |only smerc-0.4.3/smerc/man/dmst.zones.Rd |only smerc-0.4.3/smerc/man/dweights.Rd |only smerc-0.4.3/smerc/man/flex.test.Rd | 152 ++--- smerc-0.4.3/smerc/man/flex.zones.Rd | 74 +- smerc-0.4.3/smerc/man/mlf.test.Rd |only smerc-0.4.3/smerc/man/mlf.zones.Rd |only smerc-0.4.3/smerc/man/nnpop.Rd | 66 +- smerc-0.4.3/smerc/man/nydf.Rd | 55 +- smerc-0.4.3/smerc/man/nypoly.Rd | 33 - smerc-0.4.3/smerc/man/nyw.Rd | 39 - smerc-0.4.3/smerc/man/plot.scan.Rd | 89 +-- smerc-0.4.3/smerc/man/plot.tango.Rd |only smerc-0.4.3/smerc/man/scan.stat.Rd | 71 +- smerc-0.4.3/smerc/man/scan.test.Rd | 184 +++--- smerc-0.4.3/smerc/man/scan.zones.Rd |only smerc-0.4.3/smerc/man/tango.stat.Rd |only smerc-0.4.3/smerc/man/tango.test.Rd |only smerc-0.4.3/smerc/man/uls.test.Rd | 160 +++-- smerc-0.4.3/smerc/man/uls.zones.Rd | 75 +- smerc-0.4.3/smerc/tests/flex_nycases.txt | 562 ++++++++++----------- smerc-0.4.3/smerc/tests/flex_nycoords.txt | 562 ++++++++++----------- smerc-0.4.3/smerc/tests/flex_nyw.txt | 562 ++++++++++----------- smerc-0.4.3/smerc/tests/flexscanformat.R | 46 - smerc-0.4.3/smerc/tests/satscanformat.R | 8 smerc-0.4.3/smerc/tests/satscannycases.txt | 562 ++++++++++----------- smerc-0.4.3/smerc/tests/satscannycoords.txt | 562 ++++++++++----------- smerc-0.4.3/smerc/tests/satscannyoutpoisson.txt | 326 ++++++------ smerc-0.4.3/smerc/tests/satscannypop.txt | 562 ++++++++++----------- smerc-0.4.3/smerc/tests/test-all.R | 4 smerc-0.4.3/smerc/tests/testthat/test-bn.test.R |only smerc-0.4.3/smerc/tests/testthat/test-scan.test.R | 192 +++---- smerc-0.4.3/smerc/tests/testthat/test-tango.test.R |only 67 files changed, 3500 insertions(+), 3445 deletions(-)
Title: Model-Free Reinforcement Learning
Description: Performs model-free reinforcement learning in R. This implementation enables the learning
of an optimal policy based on sample sequences consisting of states, actions and rewards. In
addition, it supplies multiple predefined reinforcement learning algorithms, such as experience
replay.
Author: Nicolas Proellochs [aut, cre],
Stefan Feuerriegel [aut]
Maintainer: Nicolas Proellochs <nicolas.proellochs@is.uni-freiburg.de>
Diff between ReinforcementLearning versions 1.0.1 dated 2017-06-19 and 1.0.2 dated 2018-04-08
DESCRIPTION | 10 +++++----- LICENSE | 2 +- MD5 | 14 +++++++------- NEWS.md | 8 ++++++++ R/ReinforcementLearning.R | 8 ++++++-- README.md | 2 +- build/vignette.rds |binary inst/doc/ReinforcementLearning.html | 10 +++++----- 8 files changed, 33 insertions(+), 21 deletions(-)
More information about ReinforcementLearning at CRAN
Permanent link
Title: 'tint' is not 'Tufte'
Description: A 'tufte'-alike style for 'rmarkdown'.
Author: Dirk Eddelbuettel
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between tint versions 0.0.5 dated 2018-01-05 and 0.1.0 dated 2018-04-08
tint-0.0.5/tint/inst/rmarkdown/templates/html |only tint-0.0.5/tint/inst/rmarkdown/templates/pdf |only tint-0.1.0/tint/ChangeLog | 44 +++++++++++++++ tint-0.1.0/tint/DESCRIPTION | 8 +- tint-0.1.0/tint/MD5 | 63 +++++++++++----------- tint-0.1.0/tint/NAMESPACE | 2 tint-0.1.0/tint/R/html.R | 5 + tint-0.1.0/tint/R/pdf.R | 17 ++++- tint-0.1.0/tint/README.md | 23 +++++--- tint-0.1.0/tint/build/vignette.rds |binary tint-0.1.0/tint/inst/doc/tintHTML.Rmd | 2 tint-0.1.0/tint/inst/doc/tintHTML.html | 38 ++++++------- tint-0.1.0/tint/inst/doc/tintPDF.Rmd | 2 tint-0.1.0/tint/inst/doc/tintPDF.pdf |binary tint-0.1.0/tint/inst/rmarkdown/templates/tintBook |only tint-0.1.0/tint/inst/rmarkdown/templates/tintHtml |only tint-0.1.0/tint/inst/rmarkdown/templates/tintPdf |only tint-0.1.0/tint/man/tintHtml.Rd | 10 ++- tint-0.1.0/tint/vignettes/tintHTML.Rmd | 2 tint-0.1.0/tint/vignettes/tintPDF.Rmd | 2 20 files changed, 146 insertions(+), 72 deletions(-)
Title: Nonlinear Network Reconstruction, Clustering, and Variable
Selection Based on DCOL (Distance Based on Conditional Ordered
List)
Description: It includes four methods: DCOL-based K-profiles clustering, non-linear network reconstruction, non-linear hierarchical clustering, and variable selection for generalized additive model.
Author: Tianwei Yu, Haodong Liu
Maintainer: Tianwei Yu<tianwei.yu@emory.edu>
Diff between nlnet versions 1.0 dated 2015-10-13 and 1.2 dated 2018-04-08
nlnet-1.0/nlnet/R/dataGen.R |only nlnet-1.2/nlnet/DESCRIPTION | 22 - nlnet-1.2/nlnet/MD5 | 24 - nlnet-1.2/nlnet/NAMESPACE | 6 nlnet-1.2/nlnet/R/KPC.R | 13 nlnet-1.2/nlnet/R/data.gen.R |only nlnet-1.2/nlnet/R/nlhc.R | 729 +++++++++++++++++------------------ nlnet-1.2/nlnet/R/nlnet.R | 123 ++--- nlnet-1.2/nlnet/R/nvsd.R |only nlnet-1.2/nlnet/R/stage.forward.R |only nlnet-1.2/nlnet/man/KPC.Rd | 11 nlnet-1.2/nlnet/man/data.gen.Rd | 11 nlnet-1.2/nlnet/man/nlhc.Rd | 4 nlnet-1.2/nlnet/man/nlnet.Rd | 29 - nlnet-1.2/nlnet/man/nvsd.Rd |only nlnet-1.2/nlnet/man/stage.forward.Rd |only 16 files changed, 467 insertions(+), 505 deletions(-)
Title: Create Meme
Description: The word 'Meme' was originated from the book, 'The Selfish Gene', authored by Richard Dawkins (1976).
It is a unit of culture that is passed from one generation to another and correlates to the gene, the unit of physical heredity.
The internet memes are captioned photos that are intended to be funny, ridiculous.
Memes behave like infectious viruses and travel from person to person quickly through social media.
The 'meme' package allows users to make custom memes.
Author: Guangchuang Yu [aut, cre] (<https://orcid.org/0000-0002-6485-8781>)
Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>
Diff between meme versions 0.1.1 dated 2017-12-06 and 0.2.0 dated 2018-04-08
DESCRIPTION | 10 +++++----- MD5 | 14 +++++++------- NEWS | 4 ++++ R/grob.R | 10 +++++----- R/meme.R | 2 +- build/vignette.rds |binary inst/doc/meme.html | 30 +++++++++++++++--------------- man/meme.Rd | 2 +- 8 files changed, 38 insertions(+), 34 deletions(-)
Title: Simple Fisheries Stock Assessment Methods
Description: A variety of simple fish stock assessment methods.
Detailed vignettes are available on the fishR website <http://derekogle.com/fishR/>.
Author: Derek Ogle [aut, cre]
Maintainer: Derek Ogle <derek@derekogle.com>
Diff between FSA versions 0.8.17 dated 2017-10-29 and 0.8.19 dated 2018-04-08
DESCRIPTION | 10 - MD5 | 187 +++++++++++++-------------- NAMESPACE | 6 NEWS.md | 45 ++++++ R/FSA-internals.R | 43 +++--- R/FSAUtils.R | 109 +++++++++++---- R/PikeNY.R | 6 R/PikeNYPartial1.R | 6 R/SMBassWB.R | 4 R/Summarize.R | 17 +- R/addZeroCatch.R | 32 ++-- R/ageComparisons.R | 95 +++++++------ R/alkIndivAge.R | 2 R/bcFuns.R | 6 R/bootstrap.R | 175 +++++++++++++++---------- R/capHistConvert.R | 71 +++++----- R/capHistSum.R | 48 +++--- R/catchCurve.R | 81 +++++++---- R/chapmanRobson.R | 42 +++--- R/comparisonsDVR.R | 24 +-- R/depletion.R | 15 ++ R/expandCounts.R | 16 +- R/extraTests.R | 36 ++--- R/fitPlot.R | 60 ++++---- R/growthModels.R | 148 +++++++++++---------- R/hist.formula.R | 61 ++++---- R/knitUtil.R | 37 ++--- R/lwCompPreds.R | 47 +++--- R/metaM.R | 86 ++++++------ R/mrClosed.R | 78 +++++------ R/plotBinResp.R | 10 - R/psdAdd.R | 33 ++-- R/psdPlot.R | 63 +++++---- R/residPlot.R | 54 +++---- R/vbStarts.R | 26 +-- R/wrAdd.R | 22 +-- man/PikeNY.Rd | 6 man/PikeNYPartial1.Rd | 6 man/SMBassWB.Rd | 4 man/Schnute.Rd | 6 man/Subset.Rd | 8 - man/Summarize.Rd | 12 - man/addZeroCatch.Rd | 16 +- man/ageBias.Rd | 27 ++- man/agePrecision.Rd | 34 ++-- man/alkIndivAge.Rd | 2 man/bootCase.Rd | 61 +++++--- man/capHistConvert.Rd | 40 ++--- man/capHistSum.Rd | 24 +-- man/catchCurve.Rd | 51 ++++--- man/chapmanRobson.Rd | 40 ++--- man/chooseColors.Rd | 2 man/col2rgbt.Rd | 4 man/compIntercepts.Rd | 12 - man/compSlopes.Rd | 6 man/depletion.Rd | 11 + man/diags.Rd | 4 man/extraTests.Rd | 8 - man/fishR.Rd | 2 man/fitPlot.Rd | 50 +++---- man/geomean.Rd | 2 man/growthModels.Rd | 68 ++++----- man/headtail.Rd | 2 man/hist.formula.Rd | 32 ++-- man/hoCoef.Rd | 6 man/knitUtil.Rd | 24 +-- man/lagratio.Rd | 6 man/logbtcf.Rd | 4 man/lwCompPreds.Rd | 22 +-- man/metaM.Rd | 80 +++++------ man/mrClosed.Rd | 70 +++++----- man/nlsBoot.Rd | 39 +++-- man/plotBinResp.Rd | 8 - man/psdAdd.Rd | 24 +-- man/psdPlot.Rd | 36 ++--- man/rSquared.Rd |only man/rcumsum.Rd | 4 man/residPlot.Rd | 42 +++--- man/validn.Rd | 2 man/wrAdd.Rd | 12 - tests/testthat/EXS_Summarize.R | 2 tests/testthat/Rplots.pdf |binary tests/testthat/test_CatchCurve_MSG.R | 16 +- tests/testthat/test_CatchCurve_OUT.R | 5 tests/testthat/test_FSAUtils_MSG.R | 6 tests/testthat/test_FSAUtils_OUT.R | 36 +++-- tests/testthat/test_PSD_MSG.R | 8 - tests/testthat/test_Summarize_OUT_VALIDATE.R | 16 ++ tests/testthat/test_bootstrap_MSG.R | 4 tests/testthat/test_bootstrap_OUT.R | 4 tests/testthat/test_capHist_OUT.R | 18 +- tests/testthat/test_depletion_OUT.R | 6 tests/testthat/test_dunnTest_OUT.R | 19 ++ tests/testthat/test_mrClosed_OUT.R | 10 - tests/testthat/test_removal_VALIDATE.R | 12 - 95 files changed, 1611 insertions(+), 1271 deletions(-)
Title: Distance and Similarity Measures
Description: Provides an extensible framework for the efficient calculation of auto- and cross-proximities, along with implementations of the most popular ones.
Author: David Meyer [aut, cre],
Christian Buchta [aut]
Maintainer: David Meyer <David.Meyer@R-project.org>
Diff between proxy versions 0.4-21 dated 2018-01-04 and 0.4-22 dated 2018-04-08
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- NAMESPACE | 10 +++++----- R/registry.R | 12 ++++++------ inst/NEWS.Rd | 6 ++++++ inst/doc/overview.pdf |binary 6 files changed, 25 insertions(+), 19 deletions(-)
Title: Support for Linear Models
Description: Provides tools and a consistent interface to support analyses using General, Generalized, and Multi-level Linear Models.
Author: John Curtin <jjcurtin@wisc.edu>
Maintainer: John Curtin <jjcurtin@wisc.edu>
Diff between lmSupport versions 2.9.11 dated 2017-08-31 and 2.9.13 dated 2018-04-08
DESCRIPTION | 9 ++++--- MD5 | 58 ++++++++++++++++++++++++----------------------- R/dfReadDat.R | 2 - R/dfRownames.R | 24 ++++++++++++------- R/dfWriteDat.R | 8 ++---- R/figBarPlot.R | 6 ++-- R/modelPower.R | 2 - R/varOdd.R | 16 ++++++++---- data |only man/BAC.Rd |only man/dfReadDat.Rd | 6 ++-- man/dfRemoveCases.Rd | 6 +--- man/dfRownames.Rd | 8 ++++-- man/dfWriteDat.Rd | 9 ++++--- man/figBarPlot.Rd | 35 +++++++++++++++------------- man/figLegend.Rd | 29 ++++++++++++----------- man/modelAssumptions.Rd | 3 +- man/modelBoxCox.Rd | 2 - man/modelCaseAnalysis.Rd | 4 +-- man/modelCompare.Rd | 4 +-- man/modelCorrectSE.Rd | 2 - man/modelEffectSizes.Rd | 2 - man/modelErrors.Rd | 3 +- man/modelPower.Rd | 2 - man/modelR2.Rd | 2 - man/modelSummary.Rd | 2 - man/varDescribe.Rd | 6 ++-- man/varOdd.Rd | 12 ++++----- man/varPlot.Rd | 7 +++-- man/varRegressors.Rd | 7 ++--- man/varScore.Rd | 2 - 31 files changed, 148 insertions(+), 130 deletions(-)
Title: Regularization Paths for Regression Models with Grouped
Covariates
Description: Efficient algorithms for fitting the regularization path of
linear or logistic regression models with grouped penalties. This
includes group selection methods such as group lasso, group MCP, and
group SCAD as well as bi-level selection methods such as the group
exponential lasso, the composite MCP, and the group bridge.
Author: Patrick Breheny [aut, cre], Yaohui Zeng [ctb]
Maintainer: Patrick Breheny <patrick-breheny@uiowa.edu>
Diff between grpreg versions 3.1-2 dated 2017-07-08 and 3.1-3 dated 2018-04-08
DESCRIPTION | 8 ++++---- MD5 | 33 +++++++++++++++++---------------- NEWS | 3 +++ R/newXG.R | 13 ++++++++++--- R/setupLambda.R | 2 +- build/vignette.rds |binary inst/doc/penalties.pdf |binary inst/doc/quick-start.pdf |binary inst/tests/extra-features.R | 4 ++-- inst/tests/gBridge.R |only src/gdfit_binomial.c | 4 ++-- src/gdfit_cox.c | 4 ++-- src/gdfit_gaussian.c | 4 ++-- src/gdfit_poisson.c | 4 ++-- src/lcdfit_binomial.c | 2 +- src/lcdfit_cox.c | 2 +- src/lcdfit_gaussian.c | 2 +- src/lcdfit_poisson.c | 2 +- 18 files changed, 49 insertions(+), 38 deletions(-)
Title: Unified Parallel and Distributed Processing in R for Everyone
Description: The purpose of this package is to provide a lightweight and
unified Future API for sequential and parallel processing of R
expression via futures. The simplest way to evaluate an expression
in parallel is to use `x %<-% { expression }` with `plan(multiprocess)`.
This package implements sequential, multicore, multisession, and
cluster futures. With these, R expressions can be evaluated on the
local machine, in parallel a set of local machines, or distributed
on a mix of local and remote machines.
Extensions to this package implement additional backends for
processing futures via compute cluster schedulers etc.
Because of its unified API, there is no need to modify any code in order
switch from sequential on the local machine to, say, distributed
processing on a remote compute cluster.
Another strength of this package is that global variables and functions
are automatically identified and exported as needed, making it
straightforward to tweak existing code to make use of futures.
Author: Henrik Bengtsson [aut, cre, cph]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between future versions 1.7.0 dated 2018-02-11 and 1.8.0 dated 2018-04-08
DESCRIPTION | 14 +- MD5 | 101 +++++++-------- NAMESPACE | 8 - NEWS | 60 ++++++++ R/ClusterFuture-class.R | 51 +++---- R/ConstantFuture-class.R | 2 R/Future-class.R | 234 ++++++++++++++++++++++++++++------- R/FutureCondition-class.R | 22 ++- R/FutureEvaluationCondition-class.R | 28 ++-- R/FutureResult-class.R |only R/MulticoreFuture-class.R | 63 ++++----- R/UniprocessFuture-class.R | 52 +++---- R/backtrace.R | 28 ++-- R/futureCall.R | 81 +++++++++++- R/future_lapply.R | 2 R/globals.R | 2 R/globals_OP.R | 4 R/label_OP.R | 2 R/lazy_OP.R | 2 R/nbrOfWorkers.R | 6 R/plan_OP.R | 2 R/resolve.R | 11 - R/seed_OP.R | 2 R/signalEarly.R | 77 +++++++---- R/tweak_OP.R | 2 R/utils.R | 4 R/zzz.plan.R | 10 - build/vignette.rds |binary inst/doc/future-1-overview.html | 30 +--- inst/doc/future-1-overview.md.rsp | 31 +--- inst/doc/future-2-issues.html | 2 inst/doc/future-2-issues.md.rsp | 2 inst/doc/future-3-topologies.html | 2 inst/doc/future-3-topologies.md.rsp | 2 inst/doc/future-4-startup.html | 2 inst/doc/future-4-startup.md.rsp | 2 man/FutureResult.Rd |only man/backtrace.Rd | 17 +- man/future.Rd | 3 man/result.Rd |only tests/backtrace.R | 4 tests/cluster.R | 23 +++ tests/futureCall.R | 80 +++++++++++ tests/globals,manual.R | 2 tests/incl/start,load-only.R | 8 - tests/multicore.R | 158 ++++++++++++++--------- tests/multiprocess.R | 19 ++ tests/multisession.R | 20 ++ tests/nested_futures.R | 13 + vignettes/future-1-overview.md.rsp | 31 +--- vignettes/future-2-issues.md.rsp | 2 vignettes/future-3-topologies.md.rsp | 2 vignettes/future-4-startup.md.rsp | 2 53 files changed, 902 insertions(+), 425 deletions(-)
Title: Distance Based Ranking Models
Description: Implements distance based probability models for ranking data.
The supported distance metrics include Kendall distance, Spearman distance, Footrule distance, Hamming distance,
, Weighted-tau distance and Weighted Kendall distance.
Phi-component model and mixture models are also supported.
Author: Zhaozhi Qian
Maintainer: Zhaozhi Qian <qianzhaozhi@connect.hku.hk>
Diff between rankdist versions 1.1.2 dated 2015-09-27 and 1.1.3 dated 2018-04-08
DESCRIPTION | 8 MD5 | 15 NAMESPACE | 56 +-- R/RcppExports.R | 86 ++--- R/class.R | 630 ++++++++++++++++++++-------------------- R/rankdist.R | 816 ++++++++++++++++++++++++++-------------------------- R/utils.R | 516 +++++++++++++++++++------------- src/RcppExports.cpp | 150 +++------ src/rankdist_init.c |only 9 files changed, 1162 insertions(+), 1115 deletions(-)
Title: Tools for Working with Multidimensional Data
Description: Provides various tools for working with multidimensional
data in R and C++, including extremely fast nearest-neighbor- and range-
queries without the overhead of linked tree nodes.
Author: Timothy Keitt [aut, cre]
Maintainer: Timothy Keitt <tkeitt@gmail.com>
Diff between kdtools versions 0.1.0 dated 2018-04-06 and 0.2.0 dated 2018-04-08
DESCRIPTION | 8 +- LICENSE |only MD5 | 24 +++--- NEWS.md |only README.md | 2 build/vignette.rds |binary inst/doc/kdtools.Rmd | 2 inst/doc/kdtools.html | 80 +++++++++++----------- inst/doc/methods.R | 2 inst/doc/methods.Rmd | 4 - inst/doc/methods.html | 112 +++++++++++++++---------------- man/figures/README-unnamed-chunk-1-1.png |binary vignettes/kdtools.Rmd | 2 vignettes/methods.Rmd | 4 - 14 files changed, 121 insertions(+), 119 deletions(-)
Title: Urban Dictionary API Client
Description: A client for the Urban Dictionary <http://www.urbandictionary.com/> API.
Author: Oliver Keyes [aut, cre]
Maintainer: Oliver Keyes <ironholds@gmail.com>
Diff between udapi versions 0.1.0 dated 2016-07-20 and 0.1.1 dated 2018-04-08
DESCRIPTION | 10 +++++----- MD5 | 14 +++++++------- NEWS | 6 +++++- man/get_tags.Rd | 1 - man/get_term.Rd | 1 - man/random_term.Rd | 1 - man/udapi.Rd | 2 +- tests/testthat/test_udapi.R | 4 ++-- 8 files changed, 20 insertions(+), 19 deletions(-)
Title: Liu Regression with Liu Biasing Parameters and Statistics
Description: Linear Liu regression coefficient's estimation and testing with different Liu related measures such as MSE, R-squared etc.
REFERENCES
i. Akdeniz and Kaciranlar (1995) <doi:10.1080/03610929508831585>
ii. Druilhet and Mom (2008) <doi:10.1016/j.jmva.2006.06.011>
iii. Imdadullah, Aslam, and Saima (2017)
iv. Liu (1993) <doi:10.1080/03610929308831027>
v. Liu (2001) <doi:10.1016/j.jspi.2010.05.030>.
Author: Imdad Ullah Muhammad [aut, cre]
(<https://orcid.org/0000-0002-1315-491X>),
Aslam Muhammad [aut, ctb]
Maintainer: Imdad Ullah Muhammad <mimdadasad@gmail.com>
Diff between liureg versions 1.1.1 dated 2017-09-15 and 1.1.2 dated 2018-04-08
DESCRIPTION | 28 +++++++++++++++++++++------- MD5 | 33 +++++++++++++++++---------------- inst/CITATION |only inst/NEWS.Rd | 9 ++++++++- man/dest.Rd | 30 +++++++++++++++++++----------- man/hatl.Rd | 17 ++++++++++++----- man/infoliu.Rd | 17 +++++++++++------ man/liu.Rd | 17 ++++++++++------- man/liureg-package.Rd | 4 ++-- man/lstats.liu.Rd | 17 +++++++++-------- man/plot.biasliu.Rd | 12 +++++++++--- man/plot.infoliu.Rd | 14 ++++++++++---- man/plot.liu.Rd | 11 ++++++++--- man/predict.liu.Rd | 7 +++++-- man/press.liu.Rd | 20 ++++++++++++-------- man/residuals.liu.Rd | 8 ++++---- man/summary.liu.Rd | 22 +++++++++++++++------- man/vcov.liu.Rd | 10 +++++++--- 18 files changed, 179 insertions(+), 97 deletions(-)
Title: Observed-Score Linking and Equating
Description: Contains methods for observed-score linking
and equating under the single-group, equivalent-groups,
and nonequivalent-groups with anchor test(s) designs.
Equating types include identity, mean, linear, general
linear, equipercentile, circle-arc, and composites of
these. Equating methods include synthetic, nominal
weights, Tucker, Levine observed score, Levine true
score, Braun/Holland, frequency estimation, and chained
equating. Plotting and summary methods, and methods for
multivariate presmoothing and bootstrap error estimation
are also provided.
Author: Anthony Albano <tony.d.albano@gmail.com>
Maintainer: Anthony Albano <tony.d.albano@gmail.com>
Diff between equate versions 2.0.6 dated 2017-01-11 and 2.0.7 dated 2018-04-08
equate-2.0.6/equate/inst/doc/equatevignette.R |only equate-2.0.6/equate/inst/doc/equatevignette.Rnw |only equate-2.0.6/equate/inst/doc/equatevignette.pdf |only equate-2.0.6/equate/vignettes/equatevignette.Rnw |only equate-2.0.7/equate/DESCRIPTION | 10 +-- equate-2.0.7/equate/MD5 | 59 +++++++++++------------ equate-2.0.7/equate/NEWS | 7 ++ equate-2.0.7/equate/NEWS.md | 4 + equate-2.0.7/equate/R/bootstrap.R | 34 ++++++------- equate-2.0.7/equate/R/equate-package.R | 4 - equate-2.0.7/equate/R/equate.R | 2 equate-2.0.7/equate/R/freqtab.R | 2 equate-2.0.7/equate/R/linear.R | 13 ++--- equate-2.0.7/equate/R/plot.equate.R | 2 equate-2.0.7/equate/R/px.R | 2 equate-2.0.7/equate/build/vignette.rds |binary equate-2.0.7/equate/inst/doc/equate-jss.R |only equate-2.0.7/equate/inst/doc/equate-jss.Rnw |only equate-2.0.7/equate/inst/doc/equate-jss.pdf |only equate-2.0.7/equate/man/ACTmath.Rd | 1 equate-2.0.7/equate/man/KBneat.Rd | 1 equate-2.0.7/equate/man/PISA.Rd | 1 equate-2.0.7/equate/man/bootstrap.Rd | 22 ++++---- equate-2.0.7/equate/man/composite.Rd | 12 ++-- equate-2.0.7/equate/man/equate-package.Rd | 5 - equate-2.0.7/equate/man/equate.Rd | 20 +++---- equate-2.0.7/equate/man/freqtab.Rd | 18 +++---- equate-2.0.7/equate/man/plot.bootstrap.Rd | 7 +- equate-2.0.7/equate/man/plot.equate.Rd | 3 - equate-2.0.7/equate/man/plot.freqtab.Rd | 16 +++--- equate-2.0.7/equate/man/presmoothing.Rd | 22 ++++---- equate-2.0.7/equate/man/px.Rd | 19 +++---- equate-2.0.7/equate/man/summary.freqtab.Rd | 25 ++++----- equate-2.0.7/equate/vignettes/equate-jss.Rnw |only equate-2.0.7/equate/vignettes/upgreek.sty |only 35 files changed, 157 insertions(+), 154 deletions(-)
Title: Time Series Clustering Along with Optimizations for the Dynamic
Time Warping Distance
Description: Time series clustering along with optimized techniques related
to the Dynamic Time Warping distance and its corresponding lower bounds.
Implementations of partitional, hierarchical, fuzzy, k-Shape and TADPole
clustering are available. Functionality can be easily extended with
custom distance measures and centroid definitions. Implementations of
DTW barycenter averaging and a distance based on global alignment kernels
are also provided. All included distance functions have custom loops
optimized for the calculation of cross-distance matrices, including
parallelization support. Several cluster validity indices are included.
Author: Alexis Sarda-Espinosa
Maintainer: Alexis Sarda <alexis.sarda@gmail.com>
Diff between dtwclust versions 5.3.0 dated 2018-03-05 and 5.3.1 dated 2018-04-08
DESCRIPTION | 8 MD5 | 96 - NAMESPACE | 1 R/CLUSTERING-all-cent2.R | 476 ++--- R/CLUSTERING-compare-clusterings.R | 1881 +++++++++++----------- R/CLUSTERING-tadole.R | 238 +- R/CLUSTERING-tsclust-controls.R | 8 R/CLUSTERING-tsclust.R | 1585 +++++++++--------- R/DISTANCES-dtw-basic.R | 1 R/DISTANCES-gak.R | 3 R/DISTANCES-sdtw.R | 183 +- R/GENERICS-cvi.R | 528 +++--- R/S4-TSClusters-methods.R | 2 R/S4-tsclustFamily.R | 300 +-- R/SHINY-ssdtwclust.R | 280 +-- R/UTILS-utils.R | 17 R/pkg.R | 340 ++- build/vignette.rds |binary inst/NEWS.Rd | 10 inst/doc/dtwclust.Rnw | 100 - inst/doc/dtwclust.pdf |binary inst/doc/timing-experiments.R | 2 inst/doc/timing-experiments.Rmd | 2 inst/doc/timing-experiments.html | 6 inst/ssdtwclust/main.R | 294 +-- man/TADPole.Rd | 13 man/compare_clusterings.Rd | 10 man/compare_clusterings_configs.Rd | 18 man/cvi.Rd | 4 man/dtwclust-package.Rd | 19 man/pdc_configs.Rd | 2 man/sdtw.Rd | 2 man/ssdtwclust.Rd | 4 man/tsclust-controls.Rd | 8 man/tsclust.Rd | 2 man/tsclustFamily-class.Rd | 2 man/tsclusters-methods.Rd | 2 src/centroids/dba.cpp | 100 - src/centroids/sdtw-cent.cpp | 72 src/distance-calculators/distance-calculators.cpp | 233 -- src/distance-calculators/distance-calculators.h | 80 src/distances/distances-details.h | 8 src/distances/dtw-basic.cpp | 21 src/utils/TSTSList.h | 67 tests/testthat/system/partitional.R | 493 ++--- tests/testthat/unit/configs.R | 302 +-- vignettes/REFERENCES.bib | 412 ++-- vignettes/dtwclust.Rnw | 100 - vignettes/timing-experiments.Rmd | 2 49 files changed, 4127 insertions(+), 4210 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-04-06 1.0.1
Title: Convert a SpatialLinesDataFrame Object to an 'igraph'-Class
Object
Description: Functions for converting network data from a
SpatialLinesDataFrame object to an 'igraph'-Class object.
Author: Binbin Lu
Maintainer: Binbin Lu <lubinbin220@gmail.com>
Diff between shp2graph versions 0-3 dated 2017-08-21 and 0-4 dated 2018-04-08
DESCRIPTION | 8 ++++---- MD5 | 30 +++++++++++++++++++----------- R/nt.connect.r | 2 +- R/points2network.r | 5 +++-- data/ERN_OSM.rda |only data/ERN_OSM_correct.rda |only data/LNHP.rda |only data/LNNT.rda |only data/ORN.rda |binary data/datalist |only man/ERN_OSM.Rd |only man/LNHP.Rd |only man/LNNT.Rd |only man/ORN.Rd | 6 +++--- man/PN.amalgamation.Rd | 6 +++--- man/nel2igraph.Rd | 4 ++-- man/points2network.Rd | 16 ++++++++-------- man/ptsinnt.view.Rd | 10 +++++----- man/readshpnw.Rd | 4 ++-- src/shp2graph.c | 10 +++++++--- 20 files changed, 57 insertions(+), 44 deletions(-)
Title: Anomaly Detection with Normal Probability Functions
Description: Implements anomaly detection as binary classification for cross-sectional data. Uses maximum likelihood estimates and normal probability functions to classify observations as anomalous. The method is presented in the following lecture from the Machine Learning course by Andrew Ng: <https://www.coursera.org/learn/machine-learning/lecture/C8IJp/algorithm/>, and is also described in: Aleksandar Lazarevic, Levent Ertoz, Vipin Kumar, Aysel Ozgur, Jaideep Srivastava (2003) <doi:10.1137/1.9781611972733.3>.
Author: Dmitriy Bolotov [aut, cre]
Maintainer: Dmitriy Bolotov <dbolotov@live.com>
Diff between amelie versions 0.1.0 dated 2018-02-22 and 0.2.0 dated 2018-04-08
DESCRIPTION | 6 - MD5 | 31 +++++--- NAMESPACE | 3 NEWS.md |only R/ad.R | 100 ++++++++++++++++++++-------- R/pdfunc.R |only R/predict.ad.R | 12 ++- R/utils.R | 133 +++++++++++++++++++++++--------------- build/vignette.rds |binary inst/doc/amelie-introduction.R |only inst/doc/amelie-introduction.Rmd | 50 +++++++++++--- inst/doc/amelie-introduction.html | 80 +++++++++++++++++++--- man/ad.Rd | 41 +++++++++-- man/pdfunc.Rd |only tests/testthat/test_ad.R | 130 ++++++++++++++++++++++++++++--------- tests/testthat/test_pdfunc.R |only tests/testthat/test_predict.ad.R | 13 +++ tests/testthat/test_utils.R | 96 ++++++++++++++++++++++----- vignettes/amelie-introduction.Rmd | 50 +++++++++++--- 19 files changed, 561 insertions(+), 184 deletions(-)