Title: Client for the YouTube API
Description: Get comments posted on YouTube videos, information on how many
times a video has been liked, search for videos with particular content, and
much more. You can also scrape captions from a few videos. To learn more about
the YouTube API, see <https://developers.google.com/youtube/v3/>.
Author: Gaurav Sood [aut, cre],
Kate Lyons [ctb],
John Muschelli [ctb]
Maintainer: Gaurav Sood <gsood07@gmail.com>
Diff between tuber versions 0.9.5 dated 2018-03-01 and 0.9.7 dated 2018-05-06
tuber-0.9.5/tuber/tests/testthat/token_file.rds |only tuber-0.9.7/tuber/DESCRIPTION | 16 +++++---- tuber-0.9.7/tuber/MD5 | 21 ++++++------ tuber-0.9.7/tuber/NAMESPACE | 3 + tuber-0.9.7/tuber/NEWS.md | 4 ++ tuber-0.9.7/tuber/R/get_all_channel_video_stats.R | 2 - tuber-0.9.7/tuber/R/get_channel_stats.R | 38 ++++++++++++++++++++-- tuber-0.9.7/tuber/R/upload_video.R |only tuber-0.9.7/tuber/README.md | 6 ++- tuber-0.9.7/tuber/build/vignette.rds |binary tuber-0.9.7/tuber/inst/doc/tuber-ex.html | 14 ++++---- tuber-0.9.7/tuber/man/get_channel_stats.Rd | 7 ++-- tuber-0.9.7/tuber/man/upload_video.Rd |only 13 files changed, 79 insertions(+), 32 deletions(-)
Title: Hierarchical Models for Parametric and Semi-Parametric Analyses
of Semi-Competing Risks Data
Description: Hierarchical multistate models are considered to perform the analysis of independent/clustered semi-competing risks data. The package allows to choose the specification for model components from a range of options giving users substantial flexibility, including: accelerated failure time or proportional hazards regression models; parametric or non-parametric specifications for baseline survival functions and cluster-specific random effects distribution; a Markov or semi-Markov specification for terminal event following non-terminal event. While estimation is mainly performed within the Bayesian paradigm, the package also provides the maximum likelihood estimation approach for several parametric models. The package also includes functions for univariate survival analysis as complementary analysis tools.
Author: Kyu Ha Lee, Catherine Lee, Danilo Alvares, and Sebastien Haneuse
Maintainer: Kyu Ha Lee <klee@hsph.harvard.edu>
Diff between SemiCompRisks versions 3.0 dated 2018-03-30 and 3.1 dated 2018-05-06
DESCRIPTION | 8 - MD5 | 36 ++++---- R/BayesID_AFT.R | 89 ++++++++++++++++++++ R/BayesID_HReg.R | 189 ++++++++++++++++++++++++++++++++----------- R/BayesSurv_AFT.R | 58 +++++++++++++ R/BayesSurv_HReg.R | 81 ++++++++++++++---- R/FreqID_HReg.R | 12 ++ R/FreqSurv_HReg.R | 9 +- R/methods.R | 4 inst/doc/SemiCompRisks.ltx | 12 +- inst/doc/SemiCompRisks.pdf |binary man/BayesID_AFT.Rd | 8 + man/BayesID_HReg.Rd | 8 + man/BayesSurv_AFT.Rd | 8 + man/BayesSurv_HReg.Rd | 10 +- man/FreqID_HReg.Rd | 9 +- man/FreqSurv_HReg.Rd | 8 + man/SemiCompRisks-package.Rd | 4 vignettes/SemiCompRisks.ltx | 12 +- 19 files changed, 454 insertions(+), 111 deletions(-)
Title: Magnitude-Based Inferences
Description: Allows practitioners and researchers a wholesale approach for deriving magnitude-based inferences from raw data. A major goal of 'mbir' is to programmatically detect appropriate statistical tests to run in lieu of relying on practitioners to determine correct stepwise procedures independently.
Author: Kyle Peterson [aut, cre],
Aaron Caldwell [aut]
Maintainer: Kyle Peterson <petersonkdon@gmail.com>
Diff between mbir versions 1.3 dated 2018-04-28 and 1.3.1 dated 2018-05-06
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- R/corr_test.R | 15 +++++---------- R/smd_test.R | 12 ++++++------ inst/doc/mbir-vignette.html | 12 ++++++------ 5 files changed, 24 insertions(+), 29 deletions(-)
Title: Distances and Routes on Geographical Grids
Description: Calculate distances and routes on geographic grids.
Author: Jacob van Etten
Maintainer: Jacob van Etten <jacobvanetten@yahoo.com>
Diff between gdistance versions 1.2-1 dated 2017-02-26 and 1.2-2 dated 2018-05-06
gdistance-1.2-1/gdistance/inst/CITATION |only gdistance-1.2-2/gdistance/ChangeLog | 100 +-- gdistance-1.2-2/gdistance/DESCRIPTION | 10 gdistance-1.2-2/gdistance/MD5 | 15 gdistance-1.2-2/gdistance/R/accCost.R | 72 +- gdistance-1.2-2/gdistance/build/vignette.rds |binary gdistance-1.2-2/gdistance/inst/doc/gdistance1.R | 696 ++++++++++----------- gdistance-1.2-2/gdistance/inst/doc/gdistance1.pdf |binary gdistance-1.2-2/gdistance/man/gdistance-package.Rd | 108 +-- 9 files changed, 503 insertions(+), 498 deletions(-)
Title: IMAGing engINE, Tools for Application of Image Filters to Data
Matrices
Description: Provides fast application of image filters to data matrices,
using R and C++ algorithms.
Author: Wencheng Lau-Medrano [aut, cre]
Maintainer: Wencheng Lau-Medrano <luis.laum@gmail.com>
Diff between imagine versions 1.3.1 dated 2017-07-08 and 1.4.0 dated 2018-05-06
DESCRIPTION | 8 - MD5 | 33 ++-- NAMESPACE | 1 R/RcppExports.R | 18 +- R/imagine-internal.R | 86 ++++++++--- R/imagine-main.R | 132 ++++++++++++------ README.md | 2 build/vignette.rds |binary inst/doc/vignette.R | 27 +-- inst/doc/vignette.Rmd | 31 ++-- inst/doc/vignette.html | 352 +++++++++++++++++++++++++++++++++++++++---------- man/basic2DFilter.Rd | 18 +- man/contextualMF.Rd |only man/convolutions.Rd | 24 +-- man/image-package.Rd | 2 src/RcppExports.cpp | 43 ++++- src/engines.cpp | 120 +++++++++++++++- vignettes/vignette.Rmd | 31 ++-- 18 files changed, 676 insertions(+), 252 deletions(-)
Title: Cytobank API Wrapper for R
Description: Tools to interface with Cytobank's API via R, organized by various
endpoints that represent various areas of Cytobank functionality. Learn more
about Cytobank at <https://www.cytobank.org>.
Author: Preston Ng [aut, cre],
Chris Ciccolella [aut],
Katherine Drake [aut]
Maintainer: Preston Ng <preston@cytobank.org>
Diff between CytobankAPI versions 1.1.0 dated 2017-08-10 and 1.1.2 dated 2018-05-06
DESCRIPTION | 14 +++--- MD5 | 68 +++++++++++++++---------------- NAMESPACE | 1 R/citrus.R | 2 R/drop.R | 47 --------------------- R/spade.R | 2 R/statistics.R | 12 ++--- R/viSNE-class.R | 3 + R/visne.R | 9 +++- build/vignette.rds |binary inst/NEWS | 16 +++++++ inst/doc/cytobank-advanced-analyses.Rmd | 1 inst/doc/cytobank-advanced-analyses.html | 33 ++++++++------- inst/doc/cytobank-quickstart.html | 20 +++++---- man/UserSession-class.Rd | 2 man/attachments.Rd | 15 +++--- man/authentication.Rd | 9 +--- man/citrus.Rd | 21 ++++----- man/compensations.Rd | 9 +--- man/drop.Rd | 18 -------- man/experiments.Rd | 25 +++++------ man/fcs_files.Rd | 15 +++--- man/gates.Rd | 9 +--- man/helper_functions.Rd | 5 -- man/news.Rd | 3 - man/panels.Rd | 5 -- man/populations.Rd | 5 -- man/sample_tags.Rd | 5 -- man/scales.Rd | 7 +-- man/spade.Rd | 39 ++++++++--------- man/statistics.Rd | 13 ++--- man/users.Rd | 5 -- man/viSNE-class.Rd | 2 man/visne.Rd | 21 ++++----- vignettes/cytobank-advanced-analyses.Rmd | 1 35 files changed, 211 insertions(+), 251 deletions(-)
Title: Smoothing Methods for Nonparametric Regression and Density
Estimation
Description: This is software linked to the book
'Applied Smoothing Techniques for Data Analysis -
The Kernel Approach with S-Plus Illustrations' Oxford University Press.
Author: Adrian Bowman and Adelchi Azzalini.
Ported to R by B. D. Ripley <ripley@stats.ox.ac.uk> up to version 2.0,
version 2.1 by Adrian Bowman and Adelchi Azzalini,
version 2.2 by Adrian Bowman.
Maintainer: Adrian Bowman <adrian.bowman@glasgow.ac.uk>
Diff between sm versions 2.2-5.4 dated 2014-01-16 and 2.2-5.5 dated 2018-05-06
sm-2.2-5.4/sm/tests |only sm-2.2-5.5/sm/ChangeLog | 4 sm-2.2-5.5/sm/DESCRIPTION | 16 sm-2.2-5.5/sm/MD5 | 32 sm-2.2-5.5/sm/NAMESPACE | 30 sm-2.2-5.5/sm/R/density.r | 28 sm-2.2-5.5/sm/R/regression.r | 10 sm-2.2-5.5/sm/R/rpanel.r | 124 +- sm-2.2-5.5/sm/R/sm.r | 98 +- sm-2.2-5.5/sm/R/sphere.r | 8 sm-2.2-5.5/sm/R/utilities.r | 6 sm-2.2-5.5/sm/R/variogram.r | 1654 +++++++++++++++++------------------ sm-2.2-5.5/sm/R/zzz.R | 2 sm-2.2-5.5/sm/inst/CITATION | 10 sm-2.2-5.5/sm/inst/scripts/mackgam.q | 2 sm-2.2-5.5/sm/man/sm.Rd | 8 sm-2.2-5.5/sm/man/sm.variogram.Rd | 3 sm-2.2-5.5/sm/src/init.c |only 18 files changed, 1025 insertions(+), 1010 deletions(-)
Title: Compound Poisson Linear Models
Description: Likelihood-based and Bayesian methods for various compound Poisson linear models.
Author: Yanwei (Wayne) Zhang
Maintainer: Yanwei (Wayne) Zhang <actuary_zhang@hotmail.com>
Diff between cplm versions 0.7-5 dated 2016-12-05 and 0.7-6 dated 2018-05-06
DESCRIPTION | 8 ++-- MD5 | 16 ++++---- R/amer.R | 8 ++-- R/classMethods.R | 4 +- R/lme4_lmer.R | 85 ++++++++++++++++++++++++----------------------- R/spline.R | 12 +++--- data/AutoClaim.RData |binary data/ClaimTriangle.RData |binary data/FineRoot.RData |binary 9 files changed, 68 insertions(+), 65 deletions(-)
Title: 'Rcpp' Interface to 'PostgreSQL'
Description: Fully 'DBI'-compliant 'Rcpp'-backed interface to 'PostgreSQL' <https://www.postgresql.org/>,
an open-source relational database.
Author: Hadley Wickham [aut],
Jeroen Ooms [aut],
Kirill Müller [aut, cre] (<https://orcid.org/0000-0002-1416-3412>),
RStudio [cph],
R Consortium [fnd],
Tomoaki Nishiyama [ctb] (Code for encoding vectors into strings derived
from RPostgreSQL)
Maintainer: Kirill Müller <krlmlr+r@mailbox.org>
Diff between RPostgres versions 1.1.0 dated 2018-04-06 and 1.1.1 dated 2018-05-06
DESCRIPTION | 14 +-- MD5 | 22 ++--- NAMESPACE | 6 + NEWS.md | 17 +++ R/PqConnection.R | 21 ++++ R/PqResult.R | 22 +++-- R/export.R | 18 ++++ R/names.R |only R/tables.R | 160 +++++++++++++++++++++++++++++-------- man/PqConnection-class.Rd | 3 man/postgres-tables.Rd | 36 +++++--- man/reexports.Rd |only tests/testthat/test-dbWriteTable.R | 2 13 files changed, 250 insertions(+), 71 deletions(-)
Title: Database Interface and 'MariaDB' Driver
Description: Implements a 'DBI'-compliant interface to 'MariaDB' (<https://mariadb.org/>) and 'MySQL' (<https://www.mysql.com/>) databases.
Author: Kirill Müller [aut, cre] (<https://orcid.org/0000-0002-1416-3412>),
Jeroen Ooms [aut] (<https://orcid.org/0000-0002-4035-0289>),
David James [aut],
Saikat DebRoy [aut],
Hadley Wickham [aut],
Jeffrey Horner [aut],
R Consortium [fnd],
RStudio [cph]
Maintainer: Kirill Müller <krlmlr+r@mailbox.org>
Diff between RMariaDB versions 1.0.5 dated 2018-04-03 and 1.0.6 dated 2018-05-06
DESCRIPTION | 10 ++--- MD5 | 26 +++++++------- NAMESPACE | 6 +++ NEWS.md | 12 ++++++ R/MariaDBConnection.R | 17 ++++++++- R/MariaDBResult.R | 3 + R/connect.R | 11 ++++- R/export.R | 18 +++++++++ R/names.R |only R/query.R | 27 ++++++++++++-- R/table.R | 63 +++++++++++++++++----------------- man/MariaDBConnection-class.Rd | 3 + man/dbConnect-MariaDBDriver-method.Rd | 7 +++ man/mariadb-tables.Rd | 11 ++++- man/reexports.Rd |only 15 files changed, 156 insertions(+), 58 deletions(-)
Title: 'MsgPack' C++ Header Files and Interface Functions for R
Description: 'MsgPack' header files are provided for use by R packages, along
with the ability to access, create and alter 'MsgPack' objects directly from R.
'MsgPack' is an efficient binary serialization format. It lets you exchange
data among multiple languages like 'JSON' but it is faster and smaller.
Small integers are encoded into a single byte, and typical short strings
require only one extra byte in addition to the strings themselves. This
package provides headers from the 'msgpack-c' implementation for C and
C++(11) for use by R, particularly 'Rcpp'. The included 'msgpack-c' headers
are licensed under the Boost Software License (Version 1.0); the code added
by this package as well the R integration are licensed under the GPL (>= 2).
See the files 'COPYRIGHTS' and 'AUTHORS' for a full list of copyright holders
and contributors to 'msgpack-c'.
Author: Travers Ching and Dirk Eddelbuettel; the authors and contributors of MsgPack
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppMsgPack versions 0.2.1 dated 2018-01-16 and 0.2.2 dated 2018-05-06
ChangeLog | 7 +++++++ DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- README.md | 6 ++++-- build/partial.rdb |binary build/vignette.rds |binary inst/NEWS.Rd | 7 +++++++ inst/doc/vignette.html | 10 +++++----- inst/include/msgpack/v1/object.hpp | 2 +- 9 files changed, 36 insertions(+), 20 deletions(-)
Title: Procedures for Psychological, Psychometric, and Personality
Research
Description: A general purpose toolbox for personality, psychometric theory and experimental psychology. Functions are primarily for multivariate analysis and scale construction using factor analysis, principal component analysis, cluster analysis and reliability analysis, although others provide basic descriptive statistics. Item Response Theory is done using factor analysis of tetrachoric and polychoric correlations. Functions for analyzing data at multiple levels include within and between group statistics, including correlations and factor analysis. Functions for simulating and testing particular item and test structures are included. Several functions serve as a useful front end for structural equation modeling. Graphical displays of path diagrams, factor analysis and structural equation models are created using basic graphics. Some of the functions are written to support a book on psychometric theory as well as publications in personality research. For more information, see the <https://personality-project.org/r> web page.
Author: William Revelle [aut, cre] (<https://orcid.org/0000-0003-4880-9610>)
Maintainer: William Revelle <revelle@northwestern.edu>
Diff between psych versions 1.8.3.3 dated 2018-03-30 and 1.8.4 dated 2018-05-06
DESCRIPTION | 8 ++-- MD5 | 61 +++++++++++++++++---------------- NAMESPACE | 5 ++ R/alpha.R | 49 +++++++++++++++------------ R/bestScale.R | 81 +++++++++++++++++++++++++++------------------ R/corr.test.R | 8 ++-- R/describe.R | 11 +++++- R/kappa.R | 4 ++ R/mediate.r | 2 - R/misc.R | 35 +++++++++++++++---- R/multilevel.reliability.R | 2 - R/print.psych.R | 28 ++++++++++----- R/read.clipboard.R | 1 R/score.items.R | 28 +++++++++++---- R/scoreFast.r | 2 - R/scoreOverlap.r | 12 +++++- R/sim.structural.R | 3 + R/splitHalf.R | 7 ++- R/test.psych.r | 28 +++++++++++---- R/utlilites.r | 6 +-- inst/CITATION | 4 +- inst/NEWS.Rd | 35 +++++++++++++++++-- inst/doc/intro.pdf |binary inst/doc/overview.pdf |binary inst/doc/psych_for_sem.pdf |binary man/00.psych-package.Rd | 27 +++++++++++---- man/alpha.Rd | 11 ++++-- man/best.scales.Rd | 54 +++++++++--------------------- man/fa.lookup.Rd |only man/kappa.Rd | 10 ++++- man/misc.Rd | 25 +++++++++++++ man/read.clipboard.Rd | 4 +- 32 files changed, 360 insertions(+), 191 deletions(-)
Title: Fast Imputations Using 'Rcpp' and 'Armadillo'
Description: Fast imputations under the object-oriented programming paradigm.
There was used quantitative models with a closed-form solution. Thus package is based on linear algebra operations.
The biggest improvement in time performance could be achieve for a calculation where a grouping variable have to be used.
A single evaluation of a quantitative model for the multiple imputations is another major enhancement.
Moreover there are offered a few functions built to work with popular R packages such as 'data.table'.
Author: Maciej Nasinski [aut, cre]
Maintainer: Maciej Nasinski <nasinski.maciej@gmail.com>
Diff between miceFast versions 0.1.0 dated 2018-04-16 and 0.2.3 dated 2018-05-06
miceFast-0.1.0/miceFast/inst/doc/miceFast-intro.pdf |only miceFast-0.2.3/miceFast/DESCRIPTION | 10 miceFast-0.2.3/miceFast/MD5 | 72 ++- miceFast-0.2.3/miceFast/NEWS.md | 13 miceFast-0.2.3/miceFast/R/RcppExports.R | 219 +++++++++++- miceFast-0.2.3/miceFast/R/zzz.R | 35 - miceFast-0.2.3/miceFast/build/vignette.rds |binary miceFast-0.2.3/miceFast/inst/doc/miceFast-intro.R | 32 - miceFast-0.2.3/miceFast/inst/doc/miceFast-intro.Rmd | 173 ++++++--- miceFast-0.2.3/miceFast/inst/doc/miceFast-intro.html |only miceFast-0.2.3/miceFast/inst/extdata/images/g1.png |binary miceFast-0.2.3/miceFast/inst/extdata/images/g2.png |binary miceFast-0.2.3/miceFast/inst/extdata/images/g3.png |binary miceFast-0.2.3/miceFast/inst/extdata/images/g4.png |binary miceFast-0.2.3/miceFast/inst/extdata/images/g5.png |binary miceFast-0.2.3/miceFast/inst/extdata/images/g6.png |binary miceFast-0.2.3/miceFast/inst/extdata/images/g7.png |binary miceFast-0.2.3/miceFast/inst/extdata/images/g8.png |binary miceFast-0.2.3/miceFast/inst/extdata/images/g9.png |binary miceFast-0.2.3/miceFast/inst/extdata/images/g_summary.png |only miceFast-0.2.3/miceFast/inst/extdata/performance_validity.R | 137 +++++-- miceFast-0.2.3/miceFast/man/Rcpp_miceFast-class.Rd | 2 miceFast-0.2.3/miceFast/man/VIF.Rd |only miceFast-0.2.3/miceFast/man/fill_NA.Rd |only miceFast-0.2.3/miceFast/man/fill_NA_N.Rd |only miceFast-0.2.3/miceFast/man/miceFast-package.Rd | 2 miceFast-0.2.3/miceFast/src/Makevars | 4 miceFast-0.2.3/miceFast/src/Makevars.win | 4 miceFast-0.2.3/miceFast/src/R_funs.cpp |only miceFast-0.2.3/miceFast/src/RcppExports.cpp | 47 ++ miceFast-0.2.3/miceFast/src/corrData.cpp | 11 miceFast-0.2.3/miceFast/src/miceFast.h | 19 + miceFast-0.2.3/miceFast/src/miceFast_additfunc.cpp | 40 -- miceFast-0.2.3/miceFast/src/miceFast_class.cpp | 170 +++++---- miceFast-0.2.3/miceFast/src/miceFast_quantmodels.cpp | 46 +- miceFast-0.2.3/miceFast/tests/testthat/test-corrData_fill.R | 3 miceFast-0.2.3/miceFast/tests/testthat/test-impute.R | 26 + miceFast-0.2.3/miceFast/tests/testthat/test-impute_N.R | 3 miceFast-0.2.3/miceFast/tests/testthat/test-imputes_funcs.R |only miceFast-0.2.3/miceFast/tests/testthat/test-vif.R | 1 miceFast-0.2.3/miceFast/vignettes/miceFast-intro.Rmd | 173 ++++++--- 41 files changed, 888 insertions(+), 354 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-04-03 0.9
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-02-16 1.0.2
2013-10-24 1.0.1
2013-06-20 1.0.0
2013-06-05 0.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-12-16 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-01-23 0.2.2
2017-01-20 0.2.1
2017-01-18 0.2.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-01-09 1.0.1
2016-12-29 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-03-10 1.3.15
2013-04-18 1.3.13
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-03-22 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-01-28 0.1.7
2016-11-02 0.1.5
2016-06-16 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-05-21 0.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-10-21 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2010-04-02 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-05-29 0.1.1
2017-05-12 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-01-25 0.2
2016-01-24 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-03-13 0.2.10
2016-03-01 0.2.9
2015-04-08 0.2.8
2014-02-25 0.2.7
2014-01-21 0.2.6
2013-02-22 0.2.5
2010-06-22 0.2.3
2010-02-11 0.2.1
2009-10-27 0.2
2009-09-18 0.1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-08-12 1.0.1
2016-02-09 1.0
2015-12-03 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-09-12 1.0
Title: Simplifies Plotting Data Inside Databases
Description: Leverages 'dplyr' to process the calculations of a plot inside a database.
This package provides helper functions that abstract the work at three levels:
outputs a 'ggplot', outputs the calculations, outputs the formula
needed to calculate bins.
Author: Edgar Ruiz [aut, cre]
Maintainer: Edgar Ruiz <edgar@rstudio.com>
Diff between dbplot versions 0.2.1 dated 2018-03-11 and 0.3.0 dated 2018-05-06
DESCRIPTION | 10 MD5 | 49 +-- NAMESPACE | 35 +- NEWS.md | 50 +-- R/boxplot.R | 208 ++++++------- R/dbbin.R | 96 +++--- R/dbplot.R | 10 R/discrete.R | 357 +++++++++++++---------- R/histogram.R | 206 ++++++------- R/raster.R | 324 ++++++++++---------- README.md | 633 ++++++++++++++++++++--------------------- man/db_bin.Rd | 76 ++-- man/db_compute_bins.Rd | 80 ++--- man/db_compute_boxplot.Rd | 52 +-- man/db_compute_count.Rd | 74 ++-- man/db_compute_raster.Rd | 112 +++---- man/dbplot_bar.Rd | 86 ++--- man/dbplot_boxplot.Rd | 60 +-- man/dbplot_histogram.Rd | 84 ++--- man/dbplot_line.Rd | 91 +++-- man/dbplot_raster.Rd | 124 ++++---- tests/testthat.R | 12 tests/testthat/test-boxplots.R |only tests/testthat/test-dbbin.R | 40 +- tests/testthat/test-dbplots.R | 38 +- tests/testthat/test-discrete.R |only tests/testthat/test-raster.R |only 27 files changed, 1508 insertions(+), 1399 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-11-23 0.2-2
2013-12-25 0.1-2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-12-04 3.2
2014-08-02 3.0
2014-03-10 2.0
2013-11-09 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-11-16 3042.81
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-12-06 1.0
2017-08-21 0.93
2017-08-15 0.91
2017-06-23 0.79
2017-06-23 0.80
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2009-11-22 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-07-03 1.4-3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-12-04 0.1.2
2017-11-22 0.1.1
2017-11-15 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-02-17 0.2.1.1
2015-12-08 0.2.1.0
2015-07-16 0.2
2015-03-04 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-05-30 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-11-17 0.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-08-26 1.0.3
2015-01-13 1.0.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-02-07 1.3.1
2011-10-27 1.2.40
2011-01-05 1.2.4
2010-10-18 1.2.3
2010-04-12 1.2.2
2009-11-13 1.2.1
2008-10-27 1.2.0
2005-04-07 1.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-11-23 2.2.0
2016-11-02 2.1.1
2016-09-26 2.1.0
2016-05-26 2.0
2015-03-06 1.1
2014-07-23 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-05-18 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-01-15 0.1.5
2017-11-24 0.1.4
2017-11-23 0.1.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-11-16 0.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-05-28 0.23.2
2016-07-22 0.23.0
2016-04-10 0.22.0
2016-03-30 0.20.0
2015-11-26 0.19.0
2015-11-15 0.18.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-11-21 1.1
2015-11-08 1.0.3
2014-03-04 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2010-08-27 2.2
2009-02-18 2.1
2008-03-27 2.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-01-13 0.1.0
2016-12-11 0.0.7
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-07-03 2.2.4
2017-03-24 2.2.3
2017-03-15 2.2.2
2017-02-11 2.2.0
2015-05-04 2.1.6
2015-05-01 2.1.5
2014-11-03 2.1.0
2014-08-30 2.0.9
2014-07-31 2.0.8
2014-05-19 2.0.7
2014-04-16 2.0.6
2014-03-12 2.0.5
2014-02-17 2.0.4
2014-01-21 2.0.3
2013-12-14 2.0
2013-12-10 1.3.0
2013-10-26 1.2.6
2013-06-20 1.2.5
2013-02-21 1.2.2
2013-02-21 1.2.3
2012-12-27 1.2.1
2012-12-14 1.2.0
2012-03-21 1.1
2012-01-27 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-01-24 1.7.1
2017-01-18 1.7.0
2016-12-02 1.6.2
2016-11-23 1.5.0
2016-10-01 1.4.5
2016-07-30 1.4.0
2014-10-26 1.3.5
2014-05-25 1.3.1
2014-03-16 1.2.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-11-10 0.8-11
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-10-05 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-05-16 1.0.7
2016-03-22 1.0.6
2016-01-11 1.0.5
2015-12-21 1.0.3
2015-12-16 1.0.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-06-04 1.1
2015-02-03 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-04-19 1.0.3636
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-05-02 1.0.3
2015-08-21 1.0.2
2015-07-28 1.0.1
2014-07-13 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-08-16 0.1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-07-12 1.0
Title: 'SQLite' Interface for R
Description: Embeds the 'SQLite' database engine in R and
provides an interface compliant with the 'DBI' package. The
source for the 'SQLite' engine is included.
Author: Kirill Müller [aut, cre] (<https://orcid.org/0000-0002-1416-3412>),
Hadley Wickham [aut],
David A. James [aut],
Seth Falcon [aut],
SQLite Authors [ctb] (for the included SQLite sources),
Liam Healy [ctb] (for the included SQLite sources),
R Consortium [fnd],
RStudio [cph]
Maintainer: Kirill Müller <krlmlr+r@mailbox.org>
Diff between RSQLite versions 2.1.0 dated 2018-03-29 and 2.1.1 dated 2018-05-06
DESCRIPTION | 14 +++--- MD5 | 30 +++++++------ NAMESPACE | 6 ++ NEWS.md | 12 +++++ R/SQLiteConnection.R | 22 +++++++++ R/SQLiteResult.R | 3 - R/connect.R | 11 ++++ R/export.R | 15 ++++++ R/names.R |only R/query.R | 28 +++++++++++- R/table.R | 83 ++++++++++++++++--------------------- build/vignette.rds |binary man/SQLite.Rd | 6 ++ man/SQLiteConnection-class.Rd | 12 ++++- man/reexports.Rd |only tests/testthat/test-dbWriteTable.R | 4 - tests/testthat/test-field-types.R | 2 17 files changed, 170 insertions(+), 78 deletions(-)
Title: Propagation of Uncertainty
Description: Propagation of uncertainty using higher-order Taylor expansion and Monte Carlo simulation.
Author: Andrej-Nikolai Spiess <a.spiess@uke.uni-hamburg.de>
Maintainer: Andrej-Nikolai Spiess <a.spiess@uke.uni-hamburg.de>
Diff between propagate versions 1.0-5 dated 2017-12-21 and 1.0-6 dated 2018-05-06
propagate-1.0-5/propagate/R/print.propagate.R |only propagate-1.0-5/propagate/man/print.propagate.Rd |only propagate-1.0-6/propagate/DESCRIPTION | 8 propagate-1.0-6/propagate/MD5 | 47 ++--- propagate-1.0-6/propagate/NAMESPACE | 8 propagate-1.0-6/propagate/NEWS | 25 ++ propagate-1.0-6/propagate/R/bigcor.R | 2 propagate-1.0-6/propagate/R/distr-densities.R | 34 +++ propagate-1.0-6/propagate/R/distr-samplers.R | 67 +++++++ propagate-1.0-6/propagate/R/fitDistr.R | 182 ++++++++++++--------- propagate-1.0-6/propagate/R/plot.propagate.R | 30 +-- propagate-1.0-6/propagate/R/predictNLS.R | 122 +++++++------- propagate-1.0-6/propagate/R/propagate.R | 17 + propagate-1.0-6/propagate/R/summary.propagate.R | 4 propagate-1.0-6/propagate/R/utils.R | 30 +++ propagate-1.0-6/propagate/README.md |only propagate-1.0-6/propagate/man/bigcor.Rd | 5 propagate-1.0-6/propagate/man/fitDistr.Rd | 133 ++++++++------- propagate-1.0-6/propagate/man/matrixStats.Rd | 2 propagate-1.0-6/propagate/man/mixCov.Rd | 2 propagate-1.0-6/propagate/man/plot.propagate.Rd | 8 propagate-1.0-6/propagate/man/predictNLS.Rd | 100 +++++++---- propagate-1.0-6/propagate/man/propagate.Rd | 65 ++++--- propagate-1.0-6/propagate/man/rDistr.Rd | 38 ++-- propagate-1.0-6/propagate/man/stochContr.Rd | 2 propagate-1.0-6/propagate/man/summary.propagate.Rd | 2 26 files changed, 582 insertions(+), 351 deletions(-)
Title: ANSI Control Sequence Aware String Functions
Description: Counterparts to R string manipulation functions that account for
the effects of ANSI text formatting control sequences.
Author: Brodie Gaslam [aut, cre],
R Core Team [cph] (UTF8 byte length calcs from src/util.c)
Maintainer: Brodie Gaslam <brodie.gaslam@yahoo.com>
Diff between fansi versions 0.2.2 dated 2018-03-31 and 0.2.3 dated 2018-05-06
DESCRIPTION | 8 ++--- MD5 | 43 ++++++++++++++++---------------- NEWS.md | 12 ++++++++ R/fansi-package.R | 10 +++++++ R/internal.R | 5 ++- R/load.R | 11 +++++++- R/nchar.R | 9 +++--- R/strtrim.R | 1 R/strwrap.R | 1 R/substr2.R | 3 +- README.md | 33 ++++++++++++++---------- man/fansi.Rd | 12 ++++++++ man/nchar_ctl.Rd | 3 ++ man/strtrim_ctl.Rd | 1 man/strwrap_ctl.Rd | 1 man/substr_ctl.Rd | 3 +- src/fansi.h | 13 +++++++++ src/rnchar.c |only src/tohtml.c | 27 ++++++++++++++------ tests/run.R | 4 ++ tests/unitizer/tohtml.R | 5 +++ tests/unitizer/tohtml.unitizer/data.rds |binary tests/unitizer/utf8.unitizer/data.rds |binary 23 files changed, 148 insertions(+), 57 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-01-24 0.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-07-06 0.5
2011-01-11 0.4
2010-09-11 0.3
2010-08-06 0.2
2010-07-25 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-02-25 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-06-03 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-08-03 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-01-03 0.4.1
2015-12-26 0.4.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-02-24 0.1.10
2014-09-07 0.1.9
2013-06-14 0.1.8
2013-05-26 0.1.7
2012-04-05 0.1.6
2011-07-23 0.1.5
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-07-15 1.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-04-15 2.0
2015-12-23 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-05-16 2.0.2
2015-07-06 2.0.1
2014-01-08 2.0.0
2013-03-20 1.0.0
2012-08-28 0.9.1
2012-08-24 0.9
2012-06-29 0.8
2012-06-26 0.7
2012-06-08 0.6
2012-04-30 0.5
2012-03-28 0.4
2012-02-29 0.3
2011-07-23 0.2
2011-07-06 0.1
Title: Water Resources System Simulator
Description: Water resources system simulator is a tool for simulation and analysis of large-scale water resources systems. 'WRSS' proposes functions and methods for construction, simulation and analysis of primary water resources features (e.g. reservoirs, aquifers, and etc.) based on Standard Operating Policy (SOP).
Author: Rezgar Arabzadeh; Parisa Aberi; Kaveh Panaghi; Shahab Araghinejad; Majid Montaseri
Maintainer: Rezgar Arabzadeh <rezgararabzadeh@ut.ac.ir>
Diff between WRSS versions 1.2 dated 2018-04-18 and 1.3 dated 2018-05-06
DESCRIPTION | 8 ++++---- MD5 | 27 ++++++++++++++------------- R/addObjectToArea.R | 6 +++--- R/aquiferRouting.R | 16 ++++++++-------- R/createAquifer.base.R | 14 ++++++++++---- R/createArea.R | 2 +- R/createArea.default.R | 2 +- R/createDemandSite.base.R | 2 +- R/createDemandSite.default.R | 20 ++++++++++---------- R/rippl.R | 2 ++ man/WRSS-package.Rd | 8 +++++--- man/createReservoir.Rd | 2 +- man/createReservoir.base.Rd | 12 +++++++++--- man/createReservoir.default.Rd | 2 +- man/figures/Thumbs.db |only 15 files changed, 70 insertions(+), 53 deletions(-)
Title: Western Electric Company Rules (WECO) for Shewhart Control Chart
Description: Western Electric Company Rules (WECO) have been widely used for
Shewhart control charts in order to increase the sensitivity of detecting
assignable causes of process change. This package implements eight commonly
used WECO rules and allow to apply the combination of these individual rules
for detecting the deviation from a stable process. The package also provides
a web-based graphical user interface to help users conduct the analysis.
Author: Chenguang Wang [aut, cre],
Lingmin Zeng [aut],
Zheyu Wang [aut],
Wei Zhao1 [aut],
Harry Yang [aut]
Maintainer: Chenguang Wang <cwang68@jhmi.edu>
Diff between weco versions 1.1 dated 2018-01-27 and 1.2 dated 2018-05-06
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- build/vignette.rds |binary inst/doc/weco-vignette.html | 4 ++-- src/weco.c | 8 ++++---- 5 files changed, 13 insertions(+), 13 deletions(-)
Title: A Statistically Sound 'data.frame' Processor/Conditioner
Description: A 'data.frame' processor/conditioner that prepares real-world data for predictive modeling in a statistically sound manner.
'vtreat' prepares variables so that data has fewer exceptional cases, making
it easier to safely use models in production. Common problems 'vtreat' defends
against: 'Inf', 'NA', too many categorical levels, rare categorical levels, and new
categorical levels (levels seen during application, but not during training). Reference:
"'vtreat': a data.frame Processor for Predictive Modeling", 'Zumel', 'Mount', 2016, DOI:10.5281/zenodo.1173314.
Author: John Mount [aut, cre],
Nina Zumel [aut],
Win-Vector LLC [cph]
Maintainer: John Mount <jmount@win-vector.com>
Diff between vtreat versions 1.0.3 dated 2018-03-10 and 1.0.4 dated 2018-05-06
DESCRIPTION | 13 ++++--- MD5 | 38 +++++++++++----------- NEWS.md | 5 ++ R/utils.R | 30 +++++++++++------ R/zzz.R | 1 README.md | 19 +++++++---- build/vignette.rds |binary inst/doc/SavingTreamentPlans.R | 3 + inst/doc/SavingTreamentPlans.Rmd | 3 + inst/doc/SavingTreamentPlans.html | 13 ++++--- inst/doc/vtreat.html | 64 +++++++++++++++++++------------------- inst/doc/vtreatCrossFrames.html | 58 +++++++++++++++++----------------- inst/doc/vtreatGrouping.html | 4 +- inst/doc/vtreatOverfit.html | 42 ++++++++++++------------ inst/doc/vtreatRareLevels.html | 4 +- inst/doc/vtreatScaleMode.html | 16 ++++----- inst/doc/vtreatSignificance.html | 22 ++++++------- inst/doc/vtreatSplitting.html | 4 +- inst/doc/vtreatVariableTypes.html | 54 ++++++++++++++++---------------- vignettes/SavingTreamentPlans.Rmd | 3 + 20 files changed, 211 insertions(+), 185 deletions(-)
Title: Draw Venn Diagrams
Description: Draws and displays Venn diagrams up to 7 sets, and any Boolean union of set intersections.
Author: Adrian Dusa [aut, cre, cph]
Maintainer: Adrian Dusa <dusa.adrian@unibuc.ro>
Diff between venn versions 1.5 dated 2017-11-24 and 1.6 dated 2018-05-06
DESCRIPTION | 8 MD5 | 64 +++- R/checkZone.R | 58 ++-- R/extractDisjunctions.R |only R/getCentroid.R | 69 +++- R/getZones.R | 338 ++++++++++------------- R/openPlot.R | 43 ++- R/plotRules.R | 494 ++++++++++++++-------------------- R/translate2.R | 621 +++++++++++++++++++------------------------ R/venn.R | 685 +++++++++++++++++++++--------------------------- inst/ChangeLog | 8 inst/web |only man/venn.Rd | 27 - man/venn.package.Rd | 80 ++--- 14 files changed, 1172 insertions(+), 1323 deletions(-)
Title: A Suite of Convergence Acceleration Schemes for EM, MM and Other
Fixed-Point Algorithms
Description: Algorithms for accelerating the convergence of slow,
monotone sequences from smooth, contraction mapping such as the
EM and MM algorithms. It can be used to accelerate any smooth,
linearly convergent acceleration scheme. A tutorial style
introduction to this package is available in a vignette on the
CRAN download page or, when the package is loaded in an R
session, with vignette("turboEM").
Author: Jennifer F. Bobb [aut],
Ravi Varadhan [aut, cre],
Hui Zhao [ctb]
Maintainer: Ravi Varadhan <ravi.varadhan@jhu.edu>
Diff between turboEM versions 2014.8-1 dated 2014-08-29 and 2018.1 dated 2018-05-06
DESCRIPTION | 14 ++-- MD5 | 9 +- NAMESPACE | 3 R/turboem.R | 166 ++++++++++++++++++++++++--------------------------- build |only inst/doc/turboEM.pdf |binary 6 files changed, 97 insertions(+), 95 deletions(-)
Title: Blind Source Separation and Supervised Dimension Reduction for
Time Series
Description: Different estimates are provided to solve the blind source separation problem for multivariate time series with stochastic volatility (Matilainen, Nordhausen and Oja (2015) <doi:10.1016/j.spl.2015.04.033>); Matilainen, Miettinen, Nordhausen, Oja and Taskinen (2017) <doi:10.17713/ajs.v46i3-4.671>) and supervised dimension reduction problem for multivariate time series (Matilainen, Croux, Nordhausen and Oja (2017) <doi:10.1016/j.ecosta.2017.04.002>).
Author: Markus Matilainen, Christophe Croux, Jari Miettinen, Klaus Nordhausen, Hannu Oja, Sara Taskinen
Maintainer: Markus Matilainen <markus.matilainen@outlook.com>
Diff between tsBSS versions 0.4 dated 2017-11-17 and 0.4.1 dated 2018-05-06
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- R/lbtest.R | 7 ++++++- inst/ChangeLog | 4 ++++ man/FixNA.Rd | 2 +- man/PVC.Rd | 3 +-- man/lbtest.Rd | 6 +++--- man/tsBSS-package.Rd | 11 ++++++++--- src/tsBSS.h | 1 - 9 files changed, 35 insertions(+), 23 deletions(-)
Title: Create a Tidy Statistics Output File
Description: Produce a data file containing the output of statistical models and assist with a workflow aimed at writing scientific papers using 'R Markdown'. Supported statistical functions include: t.test(), cor.test(), lm(), aov(), anova(). The package is based on tidy data principles and the 'tidyverse' (Wickham, 2017).
Author: Willem Sleegers [aut, cre]
Maintainer: Willem Sleegers <w.sleegers@me.com>
Diff between tidystats versions 0.1 dated 2017-10-29 and 0.2 dated 2018-05-06
tidystats-0.1/tidystats/R/add_stats.r |only tidystats-0.1/tidystats/R/describe.r |only tidystats-0.1/tidystats/R/tidy_descriptives.r |only tidystats-0.1/tidystats/man/describe.Rd |only tidystats-0.1/tidystats/man/tidy_descriptives.Rd |only tidystats-0.2/tidystats/DESCRIPTION | 14 - tidystats-0.2/tidystats/MD5 | 70 +++-- tidystats-0.2/tidystats/NAMESPACE | 11 tidystats-0.2/tidystats/NEWS.md |only tidystats-0.2/tidystats/R/add_stats.R |only tidystats-0.2/tidystats/R/add_stats.data.frame.r | 12 tidystats-0.2/tidystats/R/add_stats.default.r | 8 tidystats-0.2/tidystats/R/add_stats_to_model.R | 55 +++- tidystats-0.2/tidystats/R/count_data.r |only tidystats-0.2/tidystats/R/describe_data.r |only tidystats-0.2/tidystats/R/globals.r | 3 tidystats-0.2/tidystats/R/report.R | 139 +++++++++-- tidystats-0.2/tidystats/R/report_anova.R | 7 tidystats-0.2/tidystats/R/report_correlation.R | 11 tidystats-0.2/tidystats/R/report_descriptives.r |only tidystats-0.2/tidystats/R/report_lm.r | 43 +++ tidystats-0.2/tidystats/R/report_p_value.R | 18 - tidystats-0.2/tidystats/R/report_t_test.R | 7 tidystats-0.2/tidystats/R/report_table_lm.R |only tidystats-0.2/tidystats/R/stats_list_to_df.r | 4 tidystats-0.2/tidystats/R/tidy_count_data.r |only tidystats-0.2/tidystats/R/tidy_describe_data.r |only tidystats-0.2/tidystats/R/tidy_stats.aov.r | 3 tidystats-0.2/tidystats/R/tidy_stats.htest.R | 32 ++ tidystats-0.2/tidystats/R/write_stats.R | 8 tidystats-0.2/tidystats/README.md | 246 +++++++++----------- tidystats-0.2/tidystats/inst/descriptives.csv |only tidystats-0.2/tidystats/man/add_stats.Rd | 16 - tidystats-0.2/tidystats/man/add_stats.data.frame.Rd | 2 tidystats-0.2/tidystats/man/count_data.Rd |only tidystats-0.2/tidystats/man/describe_data.Rd |only tidystats-0.2/tidystats/man/report.Rd | 24 + tidystats-0.2/tidystats/man/report_correlation.Rd | 4 tidystats-0.2/tidystats/man/report_descriptives.Rd |only tidystats-0.2/tidystats/man/report_lm.Rd | 9 tidystats-0.2/tidystats/man/report_p_value.Rd | 3 tidystats-0.2/tidystats/man/report_table_lm.Rd |only tidystats-0.2/tidystats/man/tidy_count_data.Rd |only tidystats-0.2/tidystats/man/tidy_describe_data.Rd |only tidystats-0.2/tidystats/man/tidy_stats.htest.Rd | 13 + tidystats-0.2/tidystats/man/write_stats.Rd | 3 46 files changed, 525 insertions(+), 240 deletions(-)
Title: Discrete Time Survival and Longitudinal Data Analysis
Description: Various functions for discrete time survival analysis and longitudinal analysis. SIMEX method for correcting for bias for errors-in-variables
in a mixed effects model. Asymptotic mean and variance of different proportional hazards test statistics using different ties methods given two
survival curves and censoring distributions. Score test and Wald test for regression analysis of grouped survival data. Calculation of survival
curves for events defined by the response variable in a mixed effects model crossing a threshold with or without confirmation.
Author: John Lawrence [aut, cre],
Jianjin Xu [ctb],
Sue Jane Wang [ctb],
Jim Hung [ctb]
Maintainer: John Lawrence <john.lawrence@fda.hhs.gov>
Diff between SurvDisc versions 0.1.0 dated 2016-10-05 and 0.1.1 dated 2018-05-06
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- R/AsympDiscSurv.R | 4 ++-- R/LongToSurv.r | 16 ++++++++-------- R/SampleSizeDiscSurv.R | 34 +++++++++++++++++----------------- R/simexlme.r | 30 +++++++++++++++--------------- 6 files changed, 50 insertions(+), 50 deletions(-)
Title: Create Panels of Independent States
Description: Create panel data consisting of independent states from 1816 to
the present. The package includes the Gleditsch & Ward (G&W) and Correlates
of War (COW) lists of independent states, as well as helper functions for
working with state panel data and standardizing other data sources to
create country-year/month/etc. data.
Author: Andreas Beger [cre, aut] (<https://orcid.org/0000-0003-1883-3169>)
Maintainer: Andreas Beger <adbeger@gmail.com>
Diff between states versions 0.2.0 dated 2018-02-23 and 0.2.1 dated 2018-05-06
DESCRIPTION | 6 +- MD5 | 22 +++++----- NEWS.md | 6 ++ R/data.R | 33 ++++++++++++++++ R/plot-missing.R | 80 ++++++++++++++++++++++++++++++++++----- build/vignette.rds |binary data/gwstates.rda |binary data/polity.rda |only inst/doc/differences-gw-cow.Rmd | 16 ------- inst/doc/differences-gw-cow.html | 68 +++------------------------------ man/plot_missing.Rd | 49 +++++++++++++++++++++-- man/polity.Rd |only vignettes/differences-gw-cow.Rmd | 16 ------- 13 files changed, 177 insertions(+), 119 deletions(-)
Title: Extract Statistics from Articles and Recompute p Values
Description: Extract statistics from articles and recompute p values.
Author: Sacha Epskamp <mail@sachaepskamp.com> & Michele B. Nuijten
<m.b.nuijten@uvt.nl>
Maintainer: Michele B. Nuijten <m.b.nuijten@uvt.nl>
Diff between statcheck versions 1.2.2 dated 2016-08-18 and 1.3.0 dated 2018-05-06
statcheck-1.2.2/statcheck/NEWS |only statcheck-1.2.2/statcheck/README |only statcheck-1.3.0/statcheck/DESCRIPTION | 10 statcheck-1.3.0/statcheck/MD5 | 25 statcheck-1.3.0/statcheck/NAMESPACE | 2 statcheck-1.3.0/statcheck/R/PDFimport.R | 147 - statcheck-1.3.0/statcheck/R/checkdir.R | 129 - statcheck-1.3.0/statcheck/R/htmlImport.R | 178 - statcheck-1.3.0/statcheck/R/identify.statcheck.R | 57 statcheck-1.3.0/statcheck/R/plot.statcheck.R | 234 +- statcheck-1.3.0/statcheck/R/statcheck.R | 2338 +++++++++++++---------- statcheck-1.3.0/statcheck/R/statcheckReport.R |only statcheck-1.3.0/statcheck/R/summary.statcheck.R | 80 statcheck-1.3.0/statcheck/inst |only statcheck-1.3.0/statcheck/man/statcheck.Rd | 17 statcheck-1.3.0/statcheck/man/statcheckReport.Rd |only 16 files changed, 1763 insertions(+), 1454 deletions(-)
Title: 'dplyr'-Like Syntax for Summary Statistics of Survey Data
Description: Use piping, verbs like 'group_by' and 'summarize', and other
'dplyr' inspired syntactic style when calculating summary statistics on survey
data using functions from the 'survey' package.
Author: Greg Freedman Ellis [aut, cre],
Thomas Lumley [ctb]
Maintainer: Greg Freedman Ellis <greg.freedman@gmail.com>
Diff between srvyr versions 0.3.1 dated 2018-03-10 and 0.3.2 dated 2018-05-06
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- NEWS.md | 4 ++++ R/survey_statistics_helpers.R | 3 ++- inst/doc/extending-srvyr.html | 4 ++-- inst/doc/srvyr-database.html | 16 ++++++++-------- inst/doc/srvyr-vs-survey.html | 8 ++++---- tests/testthat/test_survey_statistics.r | 26 ++++++++++++++++++++++++++ 8 files changed, 57 insertions(+), 26 deletions(-)
Title: Split-Population Duration (Cure) Regression
Description: An implementation of split-population duration regression models.
Unlike regular duration models, split-population duration models are
mixture models that accommodate the presence of a sub-population that is
not at risk for failure, e.g. cancer patients who have been cured by
treatment. This package implements Weibull and Loglogistic forms for the
duration component, and focuses on data with time-varying covariates.
These models were originally formulated in Boag (1949)
<http://www.jstor.org/stable/2983694> and Berkson and Gage (1952)
<http://www.jstor.org/stable/2281318>, and extended in Schmidt and Witte
(1989) <doi:10.1016/0304-4076(89)90034-1>.
Author: Andreas Beger [aut, cre] (<https://orcid.org/0000-0003-1883-3169>),
Daina Chiba [aut],
Daniel W. Hill, Jr. [aut],
Nils W. Metternich [aut],
Shahryar Minhas [aut],
Michael D. Ward [aut, cph]
Maintainer: Andreas Beger <adbeger@gmail.com>
Diff between spduration versions 0.17.0 dated 2017-10-04 and 0.17.1 dated 2018-05-06
spduration-0.17.0/spduration/NEWS |only spduration-0.17.1/spduration/DESCRIPTION | 15 +-- spduration-0.17.1/spduration/MD5 | 27 +++--- spduration-0.17.1/spduration/NEWS.md | 5 + spduration-0.17.1/spduration/R/spdur.R | 2 spduration-0.17.1/spduration/README.md | 68 ++++++++++++---- spduration-0.17.1/spduration/build/vignette.rds |binary spduration-0.17.1/spduration/inst/doc/introduction.html | 12 +- spduration-0.17.1/spduration/man/figures |only spduration-0.17.1/spduration/man/spdur.Rd | 2 spduration-0.17.1/spduration/src/loglog_lnl.cpp | 4 spduration-0.17.1/spduration/src/sploglog_lnl.cpp | 4 spduration-0.17.1/spduration/src/spweib_lnl.cpp | 4 spduration-0.17.1/spduration/src/weib_lnl.cpp | 4 spduration-0.17.1/spduration/tests/new-ex |only 15 files changed, 98 insertions(+), 49 deletions(-)
Title: R Interface to Apache Spark
Description: R interface to Apache Spark, a fast and general engine for big data
processing, see <http://spark.apache.org>. This package supports connecting to
local and remote Apache Spark clusters, provides a 'dplyr' compatible back-end,
and provides an interface to Spark's built-in machine learning algorithms.
Author: Javier Luraschi [aut, cre],
Kevin Kuo [aut] (<https://orcid.org/0000-0001-7803-7901>),
Kevin Ushey [aut],
JJ Allaire [aut],
RStudio [cph],
The Apache Software Foundation [aut, cph]
Maintainer: Javier Luraschi <javier@rstudio.com>
Diff between sparklyr versions 0.8.1 dated 2018-05-02 and 0.8.2 dated 2018-05-06
DESCRIPTION | 6 MD5 | 32 +-- NEWS.md | 6 R/livy_connection.R | 1 R/ml_classification_naive_bayes.R | 20 + R/spark_apply.R | 7 R/yarn_cluster.R | 1 inst/livy/spark-1.6.0/livyutils.scala | 1 man/ml_naive_bayes.Rd | 20 + man/spark_apply.Rd | 7 tests/testthat/logs/log4j.spark.log | 136 +++++++++++++ tests/testthat/test-ml-clustering-lda.R | 2 tests/testthat/test-ml-feature-stop-words-remover.R | 1 tests/testthat/test-ml-helpers.R | 1 tests/testthat/test-ml-pipeline-utils.R | 1 tests/testthat/test-ml-print-methods.R | 1 tests/testthat/test-ml-supervised-gradient-boosted-trees.R | 5 17 files changed, 220 insertions(+), 28 deletions(-)
Title: Forecasting Using Smoothing Functions
Description: Functions implementing Single Source of Error state-space models for purposes of time series
analysis and forecasting. The package includes exponential smoothing, SARIMA in state-space forms and
several simulation functions.
Author: Ivan Svetunkov [aut, cre] (Lecturer at Centre for Marketing Analytics
and Forecasting, Lancaster University, UK)
Maintainer: Ivan Svetunkov <ivan@svetunkov.ru>
Diff between smooth versions 2.4.1 dated 2018-03-06 and 2.4.3 dated 2018-05-06
smooth-2.4.1/smooth/R/stepwise.R |only smooth-2.4.1/smooth/R/xregExpander.R |only smooth-2.4.1/smooth/man/AICc.Rd |only smooth-2.4.1/smooth/man/nParam.Rd |only smooth-2.4.1/smooth/man/stepwise.Rd |only smooth-2.4.1/smooth/man/xregExpander.Rd |only smooth-2.4.3/smooth/DESCRIPTION | 10 smooth-2.4.3/smooth/MD5 | 81 smooth-2.4.3/smooth/NAMESPACE | 33 smooth-2.4.3/smooth/NEWS | 38 smooth-2.4.3/smooth/R/autoces.R | 4 smooth-2.4.3/smooth/R/autossarima.R | 4 smooth-2.4.3/smooth/R/ces.R | 18 smooth-2.4.3/smooth/R/error-measures.R | 221 -- smooth-2.4.3/smooth/R/es.R | 116 - smooth-2.4.3/smooth/R/ges.R | 46 smooth-2.4.3/smooth/R/iss.R | 25 smooth-2.4.3/smooth/R/methods.R | 717 +++++++- smooth-2.4.3/smooth/R/sma.R | 5 smooth-2.4.3/smooth/R/smooth-package.R | 2 smooth-2.4.3/smooth/R/ssarima.R | 14 smooth-2.4.3/smooth/R/ssfunctions.R | 517 +++--- smooth-2.4.3/smooth/R/variance-covariance.R |only smooth-2.4.3/smooth/build/partial.rdb |only smooth-2.4.3/smooth/build/vignette.rds |binary smooth-2.4.3/smooth/inst/doc/ces.html | 28 smooth-2.4.3/smooth/inst/doc/es.R | 1 smooth-2.4.3/smooth/inst/doc/es.Rmd | 5 smooth-2.4.3/smooth/inst/doc/es.html | 2142 -------------------------- smooth-2.4.3/smooth/inst/doc/ges.html | 86 - smooth-2.4.3/smooth/inst/doc/simulate.html | 76 smooth-2.4.3/smooth/inst/doc/sma.html | 8 smooth-2.4.3/smooth/inst/doc/smooth.html | 4 smooth-2.4.3/smooth/inst/doc/ssarima.html | 30 smooth-2.4.3/smooth/inst/doc/ves.html | 6 smooth-2.4.3/smooth/man/Accuracy.Rd | 2 smooth-2.4.3/smooth/man/ces.Rd | 4 smooth-2.4.3/smooth/man/covar.Rd |only smooth-2.4.3/smooth/man/es.Rd | 1 smooth-2.4.3/smooth/man/orders.Rd | 18 smooth-2.4.3/smooth/man/pls.Rd | 68 smooth-2.4.3/smooth/man/sma.Rd | 1 smooth-2.4.3/smooth/man/smooth.Rd | 1 smooth-2.4.3/smooth/man/ssarima.Rd | 1 smooth-2.4.3/smooth/tests/testthat/test_ges.R | 2 smooth-2.4.3/smooth/vignettes/es.Rmd | 5 46 files changed, 1378 insertions(+), 2962 deletions(-)
Title: Data and Variable Transformation Functions
Description: Collection of miscellaneous utility functions, supporting data
transformation tasks like recoding, dichotomizing or grouping variables,
setting and replacing missing values. The data transformation functions
also support labelled data, and all integrate seamlessly into a
'tidyverse'-workflow.
Author: Daniel Lüdecke <d.luedecke@uke.de>
Maintainer: Daniel Lüdecke <d.luedecke@uke.de>
Diff between sjmisc versions 2.7.1 dated 2018-03-25 and 2.7.2 dated 2018-05-06
sjmisc-2.7.1/sjmisc/man/merge_df.Rd |only sjmisc-2.7.2/sjmisc/DESCRIPTION | 20 sjmisc-2.7.2/sjmisc/MD5 | 69 +- sjmisc-2.7.2/sjmisc/NAMESPACE | 38 + sjmisc-2.7.2/sjmisc/NEWS.md | 25 sjmisc-2.7.2/sjmisc/R/S3-methods.R | 21 sjmisc-2.7.2/sjmisc/R/descr.R | 112 ++- sjmisc-2.7.2/sjmisc/R/dicho.R | 43 + sjmisc-2.7.2/sjmisc/R/frq.R | 104 ++- sjmisc-2.7.2/sjmisc/R/merge_df.R | 180 +---- sjmisc-2.7.2/sjmisc/R/merge_imputations.R | 15 sjmisc-2.7.2/sjmisc/R/prop_table.R | 5 sjmisc-2.7.2/sjmisc/R/rec.R | 40 + sjmisc-2.7.2/sjmisc/R/recode_mids_fun.R |only sjmisc-2.7.2/sjmisc/R/recode_to.R | 39 + sjmisc-2.7.2/sjmisc/R/round_num.R |only sjmisc-2.7.2/sjmisc/R/row_count.R | 254 ++++--- sjmisc-2.7.2/sjmisc/R/row_sums.R | 352 ++++++----- sjmisc-2.7.2/sjmisc/R/spread_coef.R | 8 sjmisc-2.7.2/sjmisc/R/std.R | 81 ++ sjmisc-2.7.2/sjmisc/R/to_long.R | 53 + sjmisc-2.7.2/sjmisc/R/zzz.R | 16 sjmisc-2.7.2/sjmisc/README.md | 88 +- sjmisc-2.7.2/sjmisc/build/partial.rdb |binary sjmisc-2.7.2/sjmisc/build/vignette.rds |binary sjmisc-2.7.2/sjmisc/inst/doc/design_philosophy.R | 1 sjmisc-2.7.2/sjmisc/inst/doc/design_philosophy.Rmd | 1 sjmisc-2.7.2/sjmisc/inst/doc/design_philosophy.html | 638 +++++++++++++------- sjmisc-2.7.2/sjmisc/inst/doc/exploringdatasets.R | 1 sjmisc-2.7.2/sjmisc/inst/doc/exploringdatasets.Rmd | 1 sjmisc-2.7.2/sjmisc/inst/doc/exploringdatasets.html | 544 +++++++++++------ sjmisc-2.7.2/sjmisc/man/add_rows.Rd |only sjmisc-2.7.2/sjmisc/man/descr.Rd | 13 sjmisc-2.7.2/sjmisc/man/frq.Rd | 15 sjmisc-2.7.2/sjmisc/man/merge_imputations.Rd | 13 sjmisc-2.7.2/sjmisc/man/round_num.Rd |only sjmisc-2.7.2/sjmisc/vignettes/design_philosophy.Rmd | 1 sjmisc-2.7.2/sjmisc/vignettes/exploringdatasets.Rmd | 1 38 files changed, 1822 insertions(+), 970 deletions(-)
Title: Test and Item Analysis via Shiny
Description: Interactive shiny application for analysis of educational tests and
their items.
Author: Patricia Martinkova [aut, cre],
Adela Drabinova [aut],
Ondrej Leder [aut],
Jakub Houdek [aut],
Lubomir Stepanek [ctb]
Maintainer: Patricia Martinkova <martinkova@cs.cas.cz>
Diff between ShinyItemAnalysis versions 1.2.6 dated 2018-03-02 and 1.2.7 dated 2018-05-06
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More information about ShinyItemAnalysis at CRAN
Permanent link
Title: Tools for Single Cell Genomics
Description: A toolkit for quality control, analysis, and exploration of single cell RNA sequencing data. 'Seurat' aims to enable users to identify and interpret sources of heterogeneity from single cell transcriptomic measurements, and to integrate diverse types of single cell data. See Satija R, Farrell J, Gennert D, et al (2015) <doi:10.1038/nbt.3192>, Macosko E, Basu A, Satija R, et al (2015) <doi:10.1016/j.cell.2015.05.002>, and Butler A and Satija R (2017) <doi:10.1101/164889> for more details.
Author: Rahul Satija [aut],
Andrew Butler [aut] (<https://orcid.org/0000-0003-3608-0463>),
Paul Hoffman [aut, cre] (<https://orcid.org/0000-0002-7693-8957>),
Jeff Farrell [ctb],
Shiwei Zheng [ctb] (<https://orcid.org/0000-0001-6682-6743>),
Christoph Hafemeister [ctb] (0000-0001-6365-8254),
Patrick Roelli [ctb]
Maintainer: Paul Hoffman <seuratpackage@gmail.com>
Diff between Seurat versions 2.3.0 dated 2018-03-23 and 2.3.1 dated 2018-05-06
DESCRIPTION | 40 ++-- MD5 | 73 ++++--- NAMESPACE | 25 ++ NEWS.md | 12 + R/as.R |only R/cluster_determination.R | 4 R/cluster_determination_internal.R | 3 R/cluster_validation.R | 52 +++-- R/conversion.R |only R/differential_expression.R | 69 ++++--- R/differential_expression_internal.R | 17 - R/dimensional_reduction.R | 144 ++++++++++++++- R/dimensional_reduction_internal.R | 3 R/interaction.R | 58 +++--- R/jackstraw.R | 40 ++-- R/jackstraw_internal.R | 9 R/plotting.R | 281 ++++++++++++++++++++--------- R/plotting_internal.R | 36 +-- R/plotting_utilities.R | 5 R/preprocessing.R | 38 +-- R/preprocessing_internal.R | 336 ++++++++++++++++++++--------------- R/printing_utilities.R | 17 - R/scoring.R | 48 ++--- R/spatial.R | 2 R/utilities.R | 2 R/utilities_internal.R | 40 +++- inst/CITATION |only man/AssessNodes.Rd | 11 - man/AssessSplit.Rd | 6 man/Convert.Rd |only man/DimPlot.Rd | 13 + man/DotPlot.Rd | 19 + man/FeatureHeatmap.Rd | 7 man/FindAllMarkers.Rd | 5 man/FindMarkers.Rd | 5 man/JackStraw.Rd | 8 man/NormalizeData.Rd | 3 man/PrintTSNEParams.Rd | 1 man/RunUMAP.Rd |only man/SplitDotPlotGG.Rd | 4 40 files changed, 952 insertions(+), 484 deletions(-)
Title: Data Analysis Functions for 'SBpipe' Package
Description: Provides an API for analysing repetitive parameter estimations and simulations of
mathematical models. Examples of mathematical models are Ordinary Differential equations (ODEs)
or Stochastic Differential Equations (SDEs) models. Among the analyses for parameter
estimation 'sbpiper' calculates statistics and generates plots for parameter density, PCA of the best
fits, parameter profile likelihood estimations (PLEs), and 2D parameter PLEs. These results can
be generated using all or a subset of the best computed parameter sets. Among the analyses
for model simulation 'sbpiper' calculates statistics and generates plots for deterministic
and stochastic time courses via cartesian and heatmap plots. Plots for the scan of one or two model
parameters can also be generated. This package is primarily used by the software 'SBpipe'.
Citation: Dalle Pezze P, Le Novère N. SBpipe: a collection of pipelines for automating
repetitive simulation and analysis tasks. BMC Systems Biology. 2017;11:46. <doi:10.1186/s12918-017-0423-3>.
Author: Piero Dalle Pezze [aut, cre, cph]
(<https://orcid.org/0000-0003-1695-6763>)
Maintainer: Piero Dalle Pezze <piero.dallepezze@gmail.com>
Diff between sbpiper versions 1.7.0 dated 2018-04-20 and 1.8.0 dated 2018-05-06
DESCRIPTION | 10 +- LICENSE | 167 --------------------------------------------- MD5 | 24 +++--- R/data.r | 27 ++++--- R/sbpiper.r | 27 ++++--- R/sbpiper_ggplot2_themes.r | 38 ++++------ R/sbpiper_pe.r | 27 ++++--- R/sbpiper_plots.r | 37 ++++----- R/sbpiper_ps1.r | 37 ++++----- R/sbpiper_ps2.r | 38 ++++------ R/sbpiper_sim.r | 37 ++++----- inst/CITATION | 2 man/sbpiper-package.Rd | 5 - 13 files changed, 158 insertions(+), 318 deletions(-)
Title: Recursive Partitioning for Modeling Survey Data
Description: Fits a linear model to survey data in each node obtained by
recursively partitioning the data. The splitting variables and splits
selected are obtained using a procedure which adjusts for complex sample
design features used to obtain the data. Likewise the model fitting
algorithm produces design-consistent coefficients to the least squares
linear model between the dependent and independent variables.
The first stage of the design is accounted for in the provided variance
estimates. The main function returns the resulting binary tree with the
linear model fit at every end-node. The package provides a number of
functions and methods for these trees.
Author: Daniell Toth [aut, cre]
Maintainer: Daniell Toth <danielltoth@yahoo.com>
Diff between rpms versions 0.2.1 dated 2017-06-02 and 0.3.0 dated 2018-05-06
rpms-0.2.1/rpms/R/main_0_1_0.R |only rpms-0.2.1/rpms/R/qtree.R |only rpms-0.2.1/rpms/R/sfun_rpm_0_1.R |only rpms-0.2.1/rpms/inst/doc/rpms_2017_02_10.R |only rpms-0.2.1/rpms/inst/doc/rpms_2017_02_10.Rnw |only rpms-0.2.1/rpms/inst/doc/rpms_2017_02_10.pdf |only rpms-0.2.1/rpms/man/split.Rd |only rpms-0.2.1/rpms/man/var_select.Rd |only rpms-0.2.1/rpms/src/model_functions_2017_04_13.cpp |only rpms-0.2.1/rpms/src/registerDynamicSymbol.cpp |only rpms-0.2.1/rpms/src/splitting_functions_2017_04_13.cpp |only rpms-0.2.1/rpms/src/surv_perm_2017_04_11.cpp |only rpms-0.2.1/rpms/src/variable_test_rpms_2017_04_07.cpp |only rpms-0.2.1/rpms/vignettes/rpms_2017_02_10.Rnw |only rpms-0.3.0/rpms/DESCRIPTION | 14 - rpms-0.3.0/rpms/MD5 | 65 ++--- rpms-0.3.0/rpms/R/RcppExports.R | 32 +- rpms-0.3.0/rpms/R/main_18_04_20.R |only rpms-0.3.0/rpms/R/qtree_18_02_02.R |only rpms-0.3.0/rpms/R/rpms.R | 200 ++++++++-------- rpms-0.3.0/rpms/R/sfun_rpm_18_04_20.R |only rpms-0.3.0/rpms/build/vignette.rds |binary rpms-0.3.0/rpms/data/CE.rda |binary rpms-0.3.0/rpms/data/datalist |only rpms-0.3.0/rpms/inst/News.html | 49 ++-- rpms-0.3.0/rpms/inst/News.md | 47 ++- rpms-0.3.0/rpms/inst/doc/rpms_2018_01_22.R |only rpms-0.3.0/rpms/inst/doc/rpms_2018_01_22.Rnw |only rpms-0.3.0/rpms/inst/doc/rpms_2018_01_22.pdf |only rpms-0.3.0/rpms/inst/notes/ToDo.md | 3 rpms-0.3.0/rpms/man/CE.Rd | 204 ++++++++--------- rpms-0.3.0/rpms/man/end_nodes.Rd | 19 + rpms-0.3.0/rpms/man/in_node.Rd | 24 +- rpms-0.3.0/rpms/man/node_plot.Rd | 21 - rpms-0.3.0/rpms/man/predict.rpms.Rd | 13 - rpms-0.3.0/rpms/man/print.rpms.Rd | 2 rpms-0.3.0/rpms/man/qtree.Rd | 17 - rpms-0.3.0/rpms/man/rpms.Rd | 31 +- rpms-0.3.0/rpms/man/survLm.Rd | 2 rpms-0.3.0/rpms/man/survLm_model.Rd | 1 rpms-0.3.0/rpms/src/Makevars | 1 rpms-0.3.0/rpms/src/RcppExports.cpp | 118 +++++---- rpms-0.3.0/rpms/src/model_funtions_2018_01_18.cpp |only rpms-0.3.0/rpms/src/splitting_functions_2018_01_18.cpp |only rpms-0.3.0/rpms/src/variable_tests_2018_04_07.cpp |only rpms-0.3.0/rpms/vignettes/rpms_2018_01_22.Rnw |only 46 files changed, 472 insertions(+), 391 deletions(-)
Title: Response Probability Functions
Description: The purpose of this package is to factor out logic and math common
to Item Factor Analysis fitting, diagnostics, and analysis. It is
envisioned as core support code suitable for more specialized IRT packages
to build upon. Complete access to optimized C functions are made available
with R_RegisterCCallable().
Author: Joshua Pritikin [cre, aut],
Jonathan Weeks [ctb],
Li Cai [ctb],
Carrie Houts [ctb],
Phil Chalmers [ctb],
Michael D. Hunter [ctb],
Carl F. Falk [ctb]
Maintainer: ORPHANED
Diff between rpf versions 0.56.1 dated 2018-04-03 and 0.56.2 dated 2018-05-06
DESCRIPTION | 9 +++++---- MD5 | 4 ++-- src/ba81quad.cpp | 2 +- 3 files changed, 8 insertions(+), 7 deletions(-)
Title: Semantically Rich I/O for the 'NeXML' Format
Description: Provides access to phyloinformatic data in 'NeXML' format. The
package should add new functionality to R such as the possibility to
manipulate 'NeXML' objects in more various and refined way and compatibility
with 'ape' objects.
Author: Carl Boettiger [cre, aut] (<https://orcid.org/0000-0002-1642-628X>),
Scott Chamberlain [aut] (<https://orcid.org/0000-0003-1444-9135>),
Hilmar Lapp [aut] (<https://orcid.org/0000-0001-9107-0714>),
Kseniia Shumelchyk [aut],
Rutger Vos [aut] (<https://orcid.org/0000-0001-9254-7318>)
Maintainer: Carl Boettiger <cboettig@gmail.com>
Diff between RNeXML versions 2.0.8 dated 2017-11-17 and 2.1.0 dated 2018-05-06
RNeXML-2.0.8/RNeXML/demo |only RNeXML-2.1.0/RNeXML/DESCRIPTION | 30 ++-- RNeXML-2.1.0/RNeXML/MD5 | 37 ++--- RNeXML-2.1.0/RNeXML/NAMESPACE | 2 RNeXML-2.1.0/RNeXML/NEWS | 7 + RNeXML-2.1.0/RNeXML/R/get_rdf.R | 26 +-- RNeXML-2.1.0/RNeXML/R/simmap.R | 3 RNeXML-2.1.0/RNeXML/R/taxize_nexml.R | 11 + RNeXML-2.1.0/RNeXML/README.md | 3 RNeXML-2.1.0/RNeXML/build/vignette.rds |binary RNeXML-2.1.0/RNeXML/inst/doc/metadata.html | 8 - RNeXML-2.1.0/RNeXML/inst/doc/sparql.R | 174 ++++++++++++-------------- RNeXML-2.1.0/RNeXML/inst/doc/sparql.Rmd | 26 +-- RNeXML-2.1.0/RNeXML/inst/doc/sparql.html | 22 +-- RNeXML-2.1.0/RNeXML/man/get_rdf.Rd | 15 -- RNeXML-2.1.0/RNeXML/tests/test-all.R | 1 RNeXML-2.1.0/RNeXML/tests/testthat/ex.tre |only RNeXML-2.1.0/RNeXML/tests/testthat/ex.xml |only RNeXML-2.1.0/RNeXML/tests/testthat/test_rdf.R | 48 ++++--- RNeXML-2.1.0/RNeXML/tests/testthat/tmp.xml |only RNeXML-2.1.0/RNeXML/vignettes/sparql.Rmd | 26 +-- 21 files changed, 222 insertions(+), 217 deletions(-)
Title: JSON for R
Description: Converts R object into JSON objects and vice-versa.
Author: Alex Couture-Beil <rjson_pkg@mofo.ca>
Maintainer: Alex Couture-Beil <rjson_pkg@mofo.ca>
Diff between rjson versions 0.2.15 dated 2014-11-02 and 0.2.18 dated 2018-05-06
DESCRIPTION | 10 MD5 | 58 +- R/json.R | 888 +++++++++++++++++++-------------------- R/zzz.R | 6 build/vignette.rds |binary inst/changelog.txt | 81 +-- inst/doc/json_rpc_server.Rnw | 50 +- inst/doc/json_rpc_server.pdf |binary inst/rpc_server/server.r | 176 +++---- inst/rpc_server/some_script.r | 22 inst/rpc_server/start_server | 16 inst/rpc_server/start_server.bat | 14 inst/unittests/runtests.r | 14 inst/unittests/test.array.r | 76 +-- inst/unittests/test.big.r | 32 - inst/unittests/test.factors.r | 18 inst/unittests/test.list.r | 93 ++-- inst/unittests/test.number.r | 101 ++-- inst/unittests/test.strings.r | 58 +- inst/unittests/test.tojson.r | 220 ++++----- inst/unittests/test.twitter.r | 14 inst/unittests/test.unicode.r | 88 ++- man/fromJSON.Rd | 81 +-- man/newJSONParser.Rd | 118 ++--- man/rjson.Rd | 24 - man/toJSON.Rd | 94 ++-- src/dump.cpp | 5 src/funcs.h |only src/parser.c | 349 +++++++++------ src/register.c |only vignettes/json_rpc_server.Rnw | 50 +- 31 files changed, 1415 insertions(+), 1341 deletions(-)
Title: R Version of GENetic Optimization Using Derivatives
Description: A genetic algorithm plus derivative optimizer.
Author: Walter R. Mebane, Jr. <wmebane@umich.edu>,
Jasjeet Singh Sekhon <sekhon@berkeley.edu>
Maintainer: Jasjeet Singh Sekhon <sekhon@berkeley.edu>
Diff between rgenoud versions 5.8-1.0 dated 2017-10-23 and 5.8-2.0 dated 2018-05-06
.Rinstignore | 4 +++- DESCRIPTION | 8 ++++---- MD5 | 11 ++++++----- README.md |only build/vignette.rds |binary inst/doc/rgenoud.pdf |binary src/evaluate.cpp | 10 ++++------ src/print_format.cpp | 6 ++---- 8 files changed, 19 insertions(+), 20 deletions(-)
Title: A Collection of Efficient and Extremely Fast R Functions
Description: A collection of fast (utility) functions for data analysis. Column- and row- wise means, medians, variances, minimums, maximums, many t, F and G-square tests, many regressions (normal, logistic, Poisson), are some of the many fast functions.
Author: Manos Papadakis, Michail Tsagris, Marios Dimitriadis, Stefanos Fafalios, Ioannis Tsamardinos, Matteo Fasiolo, Giorgos Borboudakis, John Burkardt, Changliang Zou and Kleanthi Lakiotaki
Maintainer: Manos Papadakis <papadakm95@gmail.com>
Diff between Rfast versions 1.8.8 dated 2018-03-10 and 1.8.9 dated 2018-05-06
Rfast-1.8.8/Rfast/R/colpois.mle.R |only Rfast-1.8.8/Rfast/R/countNA.R |only Rfast-1.8.8/Rfast/R/matrix.sum.R |only Rfast-1.8.8/Rfast/man/matrix.sum.Rd |only Rfast-1.8.8/Rfast/src/Choose.cpp |only Rfast-1.8.8/Rfast/src/combn.cpp |only Rfast-1.8.8/Rfast/src/gsquare_ex.cpp |only Rfast-1.8.8/Rfast/src/matrix_sum.cpp |only Rfast-1.8.8/Rfast/src/poisson_only.cpp |only Rfast-1.8.8/Rfast/src/quasi_poisson_only.cpp |only Rfast-1.8.8/Rfast/src/weibull_mle.cpp |only Rfast-1.8.9/Rfast/DESCRIPTION | 9 Rfast-1.8.9/Rfast/MD5 | 566 +++++++++++++----------- Rfast-1.8.9/Rfast/NAMESPACE | 24 - Rfast-1.8.9/Rfast/NEWS.md | 89 +++ Rfast-1.8.9/Rfast/R/AddToNamespace.R | 4 Rfast-1.8.9/Rfast/R/Elem.R |only Rfast-1.8.9/Rfast/R/Hash.R |only Rfast-1.8.9/Rfast/R/Hash.key.multi.R |only Rfast-1.8.9/Rfast/R/Outer.R |only Rfast-1.8.9/Rfast/R/Rank.R | 4 Rfast-1.8.9/Rfast/R/RemoveFromNamespace.R |only Rfast-1.8.9/Rfast/R/Rnorm.R | 8 Rfast-1.8.9/Rfast/R/Sort.int.R |only Rfast-1.8.9/Rfast/R/Stack.R |only Rfast-1.8.9/Rfast/R/acg.mle.R | 6 Rfast-1.8.9/Rfast/R/allbetas.R | 7 Rfast-1.8.9/Rfast/R/allttests.R | 8 Rfast-1.8.9/Rfast/R/ancova1.R | 6 Rfast-1.8.9/Rfast/R/ancovas.R | 12 Rfast-1.8.9/Rfast/R/anova1.R | 2 Rfast-1.8.9/Rfast/R/anova_quasipois.reg.R | 1 Rfast-1.8.9/Rfast/R/anovas.R | 6 Rfast-1.8.9/Rfast/R/apply.condition.R |only Rfast-1.8.9/Rfast/R/ar1.R | 2 Rfast-1.8.9/Rfast/R/as.Rfast.function.R |only Rfast-1.8.9/Rfast/R/auc.R | 4 Rfast-1.8.9/Rfast/R/bc.R | 4 Rfast-1.8.9/Rfast/R/beta.mle.R | 1 Rfast-1.8.9/Rfast/R/betabinom.mle.R |only Rfast-1.8.9/Rfast/R/betageom.mle.R |only Rfast-1.8.9/Rfast/R/betaprime.mle.R | 2 Rfast-1.8.9/Rfast/R/bic.corfsreg.R | 2 Rfast-1.8.9/Rfast/R/block.anova.R | 8 Rfast-1.8.9/Rfast/R/block.anovas.R | 12 Rfast-1.8.9/Rfast/R/boot.ttest2.R | 12 Rfast-1.8.9/Rfast/R/borel.mle.R | 2 Rfast-1.8.9/Rfast/R/btmprobs.R | 2 Rfast-1.8.9/Rfast/R/cat.goftests.R | 4 Rfast-1.8.9/Rfast/R/cauchy.mle.R | 52 +- Rfast-1.8.9/Rfast/R/checkUsage.R |only 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Rfast-1.8.9/Rfast/R/data.frame.to_matrix.R | 4 Rfast-1.8.9/Rfast/R/dcor.R | 2 Rfast-1.8.9/Rfast/R/dcov.R | 2 Rfast-1.8.9/Rfast/R/diri.nr2.R | 2 Rfast-1.8.9/Rfast/R/dirimultinom.mle.R | 18 Rfast-1.8.9/Rfast/R/dmvnorm.R | 2 Rfast-1.8.9/Rfast/R/dmvt.R | 2 Rfast-1.8.9/Rfast/R/eigs.sym.R |only Rfast-1.8.9/Rfast/R/env.copy.R |only Rfast-1.8.9/Rfast/R/exact.ttest2.R |only Rfast-1.8.9/Rfast/R/expregs.R | 2 Rfast-1.8.9/Rfast/R/fish.kent.R | 2 Rfast-1.8.9/Rfast/R/ftest.R | 4 Rfast-1.8.9/Rfast/R/ftests.R | 8 Rfast-1.8.9/Rfast/R/gammamle.R | 5 Rfast-1.8.9/Rfast/R/gammanb.R | 8 Rfast-1.8.9/Rfast/R/gammanb.pred.R | 6 Rfast-1.8.9/Rfast/R/gaussian.nb.R | 2 Rfast-1.8.9/Rfast/R/gaussiannb.pred.R | 2 Rfast-1.8.9/Rfast/R/gchi2Test.R |only Rfast-1.8.9/Rfast/R/geom.anovas.R | 8 Rfast-1.8.9/Rfast/R/geom.nb.R | 4 Rfast-1.8.9/Rfast/R/geomnb.pred.R | 4 Rfast-1.8.9/Rfast/R/ginis.R | 6 Rfast-1.8.9/Rfast/R/groupcorrels.R | 2 Rfast-1.8.9/Rfast/R/hd.eigen.R | 10 Rfast-1.8.9/Rfast/R/hsecant01.mle.R | 4 Rfast-1.8.9/Rfast/R/iag.mle.R | 6 Rfast-1.8.9/Rfast/R/ibeta.mle.R | 4 Rfast-1.8.9/Rfast/R/invdir.mle.R | 7 Rfast-1.8.9/Rfast/R/invgauss.reg.R |only Rfast-1.8.9/Rfast/R/invgauss.regs.R |only Rfast-1.8.9/Rfast/R/iterator.R |only Rfast-1.8.9/Rfast/R/james.R | 10 Rfast-1.8.9/Rfast/R/kruskaltest.R | 4 Rfast-1.8.9/Rfast/R/kruskaltests.R | 6 Rfast-1.8.9/Rfast/R/kuiper.R | 2 Rfast-1.8.9/Rfast/R/kurt.test2.R | 2 Rfast-1.8.9/Rfast/R/laplace.mle.R | 2 Rfast-1.8.9/Rfast/R/lindley.mle.R | 2 Rfast-1.8.9/Rfast/R/logcauchy.mle.R | 2 Rfast-1.8.9/Rfast/R/logistic.cat1.R | 4 Rfast-1.8.9/Rfast/R/loglogistic.mle.R | 32 - Rfast-1.8.9/Rfast/R/logseries.mle.R | 2 Rfast-1.8.9/Rfast/R/lower_tri.assign.R |only Rfast-1.8.9/Rfast/R/mat.mult.R |only Rfast-1.8.9/Rfast/R/maxboltz.mle.R | 5 Rfast-1.8.9/Rfast/R/mcnemars.R | 4 Rfast-1.8.9/Rfast/R/mediandir.R | 6 Rfast-1.8.9/Rfast/R/multinom.mle.R | 4 Rfast-1.8.9/Rfast/R/multinom.nb.R | 2 Rfast-1.8.9/Rfast/R/multinom.reg.R | 12 Rfast-1.8.9/Rfast/R/multinomnb.pred.R | 2 Rfast-1.8.9/Rfast/R/multivmf.mle.R | 2 Rfast-1.8.9/Rfast/R/mv.eeltest1.R | 2 Rfast-1.8.9/Rfast/R/mv.eeltest2.R | 6 Rfast-1.8.9/Rfast/R/mvbetas.R | 4 Rfast-1.8.9/Rfast/R/mvkurtosis.R | 4 Rfast-1.8.9/Rfast/R/mvlnorm.mle.R |only Rfast-1.8.9/Rfast/R/mvnorm.mle.R | 2 Rfast-1.8.9/Rfast/R/negative.R |only Rfast-1.8.9/Rfast/R/negbin.mle.R | 22 Rfast-1.8.9/Rfast/R/normlog.regs.R | 23 Rfast-1.8.9/Rfast/R/nth.R | 4 Rfast-1.8.9/Rfast/R/omp.R | 91 ++- Rfast-1.8.9/Rfast/R/ompr.R | 25 - Rfast-1.8.9/Rfast/R/percent.ttests.R | 6 Rfast-1.8.9/Rfast/R/pois.test.R | 2 Rfast-1.8.9/Rfast/R/poisdisp.test.R | 2 Rfast-1.8.9/Rfast/R/poisson.anova.R | 4 Rfast-1.8.9/Rfast/R/poisson.anovas.R | 4 Rfast-1.8.9/Rfast/R/poisson.mle.R | 2 Rfast-1.8.9/Rfast/R/poisson.nb.R | 2 Rfast-1.8.9/Rfast/R/poissonnb.pred.R | 4 Rfast-1.8.9/Rfast/R/poly.cor.R |only Rfast-1.8.9/Rfast/R/pooled.cov.R |only Rfast-1.8.9/Rfast/R/positive.R |only Rfast-1.8.9/Rfast/R/positive.negative.R |only Rfast-1.8.9/Rfast/R/proptest.R | 2 Rfast-1.8.9/Rfast/R/quasipoisson.anova.R | 4 Rfast-1.8.9/Rfast/R/quasipoisson.anovas.R | 6 Rfast-1.8.9/Rfast/R/racg.R | 4 Rfast-1.8.9/Rfast/R/rbingham.R | 2 Rfast-1.8.9/Rfast/R/regression.R | 4 Rfast-1.8.9/Rfast/R/rel.risk.R | 2 Rfast-1.8.9/Rfast/R/rint.reg.R | 51 ++ Rfast-1.8.9/Rfast/R/rint.regbx.R | 4 Rfast-1.8.9/Rfast/R/rm.anova.R | 4 Rfast-1.8.9/Rfast/R/rm.anovas.R | 6 Rfast-1.8.9/Rfast/R/rm.lines.R | 4 Rfast-1.8.9/Rfast/R/rmvlaplace.R | 2 Rfast-1.8.9/Rfast/R/rmvnorm.R | 2 Rfast-1.8.9/Rfast/R/rmvt.R | 2 Rfast-1.8.9/Rfast/R/rowVars.R | 4 Rfast-1.8.9/Rfast/R/rowcvs.R | 6 Rfast-1.8.9/Rfast/R/rowhameans.R | 2 Rfast-1.8.9/Rfast/R/rvmf.R | 48 +- Rfast-1.8.9/Rfast/R/rvonmises.R | 2 Rfast-1.8.9/Rfast/R/s3operator.R |only Rfast-1.8.9/Rfast/R/score.betaregs.R | 6 Rfast-1.8.9/Rfast/R/score.expregs.R | 4 Rfast-1.8.9/Rfast/R/score.gammaregs.R | 6 Rfast-1.8.9/Rfast/R/score.geomregs.R | 8 Rfast-1.8.9/Rfast/R/score.glms.R | 6 Rfast-1.8.9/Rfast/R/score.invgaussregs.R | 4 Rfast-1.8.9/Rfast/R/score.multinomregs.R | 14 Rfast-1.8.9/Rfast/R/score.negbinregs.R | 11 Rfast-1.8.9/Rfast/R/score.weibregs.R | 9 Rfast-1.8.9/Rfast/R/score.ztpregs.R | 6 Rfast-1.8.9/Rfast/R/sftest.R | 2 Rfast-1.8.9/Rfast/R/sftests.R | 3 Rfast-1.8.9/Rfast/R/skew.test2.R | 2 Rfast-1.8.9/Rfast/R/sort_unique.length.R | 6 Rfast-1.8.9/Rfast/R/spatmed.reg.R |only Rfast-1.8.9/Rfast/R/spdinv.R | 2 Rfast-1.8.9/Rfast/R/sscov.R |only Rfast-1.8.9/Rfast/R/standardise.R | 14 Rfast-1.8.9/Rfast/R/tmle.R | 2 Rfast-1.8.9/Rfast/R/topological_sort.R | 43 + Rfast-1.8.9/Rfast/R/transpose.R | 9 Rfast-1.8.9/Rfast/R/trim.colmeans.R |only Rfast-1.8.9/Rfast/R/trim.rowmeans.R |only Rfast-1.8.9/Rfast/R/ttest.R | 4 Rfast-1.8.9/Rfast/R/ttest1.R | 2 Rfast-1.8.9/Rfast/R/ttest2.R | 6 Rfast-1.8.9/Rfast/R/ttests.R | 12 Rfast-1.8.9/Rfast/R/ttests.pairs.R | 4 Rfast-1.8.9/Rfast/R/twoway.anova.R | 8 Rfast-1.8.9/Rfast/R/twoway.anovas.R | 12 Rfast-1.8.9/Rfast/R/ufactor.R |only Rfast-1.8.9/Rfast/R/univglms.R | 21 Rfast-1.8.9/Rfast/R/univglms2.R | 73 +-- Rfast-1.8.9/Rfast/R/upper_tri.assign.R |only Rfast-1.8.9/Rfast/R/var2test.R | 4 Rfast-1.8.9/Rfast/R/var2tests.R | 12 Rfast-1.8.9/Rfast/R/varcomps.mom.R | 2 Rfast-1.8.9/Rfast/R/vartest.R | 8 Rfast-1.8.9/Rfast/R/vartests.R | 13 Rfast-1.8.9/Rfast/R/vm.mle.R | 2 Rfast-1.8.9/Rfast/R/vmf.mle.R | 2 Rfast-1.8.9/Rfast/R/watson.R | 2 Rfast-1.8.9/Rfast/R/wrapcauchy.mle.R | 6 Rfast-1.8.9/Rfast/R/zip.mle.R | 2 Rfast-1.8.9/Rfast/R/ztp.mle.R | 2 Rfast-1.8.9/Rfast/man/AddToNamespace.Rd | 33 + Rfast-1.8.9/Rfast/man/Hash.Rd |only Rfast-1.8.9/Rfast/man/Outer.Rd |only Rfast-1.8.9/Rfast/man/Rank.Rd | 9 Rfast-1.8.9/Rfast/man/Rfast-package.Rd | 6 Rfast-1.8.9/Rfast/man/Sort.Rd | 19 Rfast-1.8.9/Rfast/man/Stack.Rd |only Rfast-1.8.9/Rfast/man/allbetas.Rd | 2 Rfast-1.8.9/Rfast/man/apply.condition.Rd |only Rfast-1.8.9/Rfast/man/as.Rfast.function.Rd |only Rfast-1.8.9/Rfast/man/boot.ttest2.Rd | 2 Rfast-1.8.9/Rfast/man/checkNamespace.Rd | 10 Rfast-1.8.9/Rfast/man/colCumMaxs.Rd |only Rfast-1.8.9/Rfast/man/colnormal.mle.Rd | 2 Rfast-1.8.9/Rfast/man/colpoisson.anovas.Rd |only Rfast-1.8.9/Rfast/man/colprods.Rd | 6 Rfast-1.8.9/Rfast/man/count_value.Rd | 6 Rfast-1.8.9/Rfast/man/cova.Rd | 12 Rfast-1.8.9/Rfast/man/eigs.sym.Rd |only Rfast-1.8.9/Rfast/man/env.copy.Rd |only Rfast-1.8.9/Rfast/man/exact.ttest2.Rd |only Rfast-1.8.9/Rfast/man/g2Test.Rd | 7 Rfast-1.8.9/Rfast/man/g2Test_univariate.Rd | 5 Rfast-1.8.9/Rfast/man/g2tests.Rd | 9 Rfast-1.8.9/Rfast/man/gaussian.nb.Rd | 2 Rfast-1.8.9/Rfast/man/gchi2Test.Rd |only Rfast-1.8.9/Rfast/man/group.sum.Rd | 3 Rfast-1.8.9/Rfast/man/group.var.Rd | 2 Rfast-1.8.9/Rfast/man/invgauss.reg.Rd |only Rfast-1.8.9/Rfast/man/invgauss.regs.Rd |only Rfast-1.8.9/Rfast/man/iterator.Rd |only Rfast-1.8.9/Rfast/man/lower_tri.Rd | 19 Rfast-1.8.9/Rfast/man/mat.mult.Rd |only Rfast-1.8.9/Rfast/man/mvnorm.mle.Rd | 32 + Rfast-1.8.9/Rfast/man/negative.Rd |only Rfast-1.8.9/Rfast/man/normlog.regs.Rd | 4 Rfast-1.8.9/Rfast/man/ompr.Rd | 10 Rfast-1.8.9/Rfast/man/poly.cor.Rd |only Rfast-1.8.9/Rfast/man/pooled.cov.Rd |only Rfast-1.8.9/Rfast/man/sort_unique.Rd | 2 Rfast-1.8.9/Rfast/man/spatmed.reg.Rd |only Rfast-1.8.9/Rfast/man/sscov.Rd |only Rfast-1.8.9/Rfast/man/trim.colmeans.Rd |only Rfast-1.8.9/Rfast/man/ufactor.Rd |only Rfast-1.8.9/Rfast/man/zip.mle.Rd | 9 Rfast-1.8.9/Rfast/src/Rank.cpp | 47 + Rfast-1.8.9/Rfast/src/Round.cpp | 4 Rfast-1.8.9/Rfast/src/Sort.cpp | 84 +++ Rfast-1.8.9/Rfast/src/add_to_namespace.cpp | 9 Rfast-1.8.9/Rfast/src/apply_condition.cpp |only Rfast-1.8.9/Rfast/src/calc_perm_cor.cpp | 32 - Rfast-1.8.9/Rfast/src/check.cpp | 102 +++- Rfast-1.8.9/Rfast/src/col_row_utilities.cpp | 170 +++++-- Rfast-1.8.9/Rfast/src/colweibull_mle.cpp | 47 + Rfast-1.8.9/Rfast/src/count_value.cpp | 31 - Rfast-1.8.9/Rfast/src/eigs_sym_c.cpp |only Rfast-1.8.9/Rfast/src/g2_export.cpp |only Rfast-1.8.9/Rfast/src/g2_helpers.cpp | 104 ++++ Rfast-1.8.9/Rfast/src/g2t.cpp | 106 ++++ Rfast-1.8.9/Rfast/src/g2t.h | 2 Rfast-1.8.9/Rfast/src/gamma.cpp | 131 +++++ Rfast-1.8.9/Rfast/src/hash.cpp | 43 + Rfast-1.8.9/Rfast/src/init.c | 64 ++ Rfast-1.8.9/Rfast/src/logistic_only.cpp | 165 ++++++ Rfast-1.8.9/Rfast/src/lower_upper_tri.cpp | 67 ++ Rfast-1.8.9/Rfast/src/mat_mult.cpp |only Rfast-1.8.9/Rfast/src/mn.cpp | 10 Rfast-1.8.9/Rfast/src/mn.h | 2 Rfast-1.8.9/Rfast/src/multinom_regs.cpp | 6 Rfast-1.8.9/Rfast/src/normlog_regs.cpp | 20 Rfast-1.8.9/Rfast/src/nth.cpp | 67 ++ Rfast-1.8.9/Rfast/src/positive_negative.cpp |only Rfast-1.8.9/Rfast/src/remove_from_namespace.cpp |only Rfast-1.8.9/Rfast/src/rmdp.cpp | 18 Rfast-1.8.9/Rfast/src/sort_unique.cpp | 102 +--- Rfast-1.8.9/Rfast/src/system_files.cpp | 20 Rfast-1.8.9/Rfast/src/system_files.h | 15 Rfast-1.8.9/Rfast/src/templates.h | 99 +++- Rfast-1.8.9/Rfast/src/transpose.cpp | 21 325 files changed, 2643 insertions(+), 1208 deletions(-)
Title: R Wrappers for EXPOKIT; Other Matrix Functions
Description: Wraps some of the matrix exponentiation
utilities from EXPOKIT (<http://www.maths.uq.edu.au/expokit/>),
a FORTRAN library that is widely recommended for matrix
exponentiation (Sidje RB, 1998. "Expokit: A Software Package
for Computing Matrix Exponentials." ACM Trans. Math. Softw.
24(1): 130-156). EXPOKIT includes functions for
exponentiating both small, dense matrices, and large, sparse
matrices (in sparse matrices, most of the cells have value 0).
Rapid matrix exponentiation is useful in phylogenetics when we
have a large number of states (as we do when we are inferring
the history of transitions between the possible geographic
ranges of a species), but is probably useful in other ways as
well.
Author: Nicholas J. Matzke [aut, cre, cph],
Roger B. Sidje [aut, cph],
Drew Schmidt [aut]
Maintainer: ORPHANED
Diff between rexpokit versions 0.26.2 dated 2018-01-31 and 0.26.3 dated 2018-05-06
DESCRIPTION | 11 ++++++----- MD5 | 4 ++-- src/my_expokit.f | 2 +- 3 files changed, 9 insertions(+), 8 deletions(-)
Title: Cluster and Merge Similar Values Within a Character Vector
Description: These functions take a character vector as input, identify and
cluster similar values, and then merge clusters together so their values
become identical. The functions are an implementation of the key collision
and ngram fingerprint algorithms from the open source tool Open Refine
<http://openrefine.org/>. More info on key collision and ngram fingerprint
can be found here <https://github.com/OpenRefine/OpenRefine/wiki/Clustering-In-Depth>.
Author: Chris Muir [aut, cre]
Maintainer: Chris Muir <chrismuirRVA@gmail.com>
Diff between refinr versions 0.2.0 dated 2018-01-05 and 0.3.0 dated 2018-05-06
refinr-0.2.0/refinr/src/key_collision_merge_funcs.cpp |only refinr-0.2.0/refinr/src/n_gram_merge_funcs.cpp |only refinr-0.2.0/refinr/src/refinr_header.h |only refinr-0.3.0/refinr/DESCRIPTION | 17 refinr-0.3.0/refinr/MD5 | 49 - refinr-0.3.0/refinr/NAMESPACE | 2 refinr-0.3.0/refinr/NEWS.md |only refinr-0.3.0/refinr/R/RcppExports.R | 48 - refinr-0.3.0/refinr/R/get_fingerprint.R | 70 +- refinr-0.3.0/refinr/R/key_collision_merge.R | 33 - refinr-0.3.0/refinr/R/n_gram_merge.R | 126 +--- refinr-0.3.0/refinr/R/refinr.R | 2 refinr-0.3.0/refinr/R/utils.R | 18 refinr-0.3.0/refinr/R/zzz.R | 15 refinr-0.3.0/refinr/README.md | 86 ++- refinr-0.3.0/refinr/build/vignette.rds |binary refinr-0.3.0/refinr/inst/doc/refinr-vignette.R | 2 refinr-0.3.0/refinr/inst/doc/refinr-vignette.Rmd | 4 refinr-0.3.0/refinr/inst/doc/refinr-vignette.html | 6 refinr-0.3.0/refinr/man/n_gram_merge.Rd | 23 refinr-0.3.0/refinr/src/Makevars |only refinr-0.3.0/refinr/src/Makevars.win |only refinr-0.3.0/refinr/src/RcppExports.cpp | 161 +---- refinr-0.3.0/refinr/src/key_collision_merge.cpp |only refinr-0.3.0/refinr/src/n_gram_merge.cpp |only refinr-0.3.0/refinr/src/refinr.h |only refinr-0.3.0/refinr/src/utils.cpp | 271 +++++++--- refinr-0.3.0/refinr/tests/testthat/test-key_collision_merge.R | 6 refinr-0.3.0/refinr/tests/testthat/test-n_gram_merge.R | 8 refinr-0.3.0/refinr/vignettes/refinr-vignette.Rmd | 4 30 files changed, 486 insertions(+), 465 deletions(-)
Title: Post Processing of (Half-)Hourly Eddy-Covariance Measurements
Description: Standard and extensible Eddy-Covariance data post-processing includes
uStar-filtering, gap-filling, and flux-partitioning.
The Eddy-Covariance (EC) micrometeorological technique quantifies continuous
exchange fluxes of gases, energy, and momentum between an ecosystem and the atmosphere.
It is important for understanding ecosystem dynamics and upscaling exchange fluxes.
(Aubinet et al. (2012) <doi:10.1007/978-94-007-2351-1>).
This package inputs pre-processed (half-)hourly data and supports further processing.
First, a quality-check and filtering is performed based on the relationship between
measured flux and friction
velocity (uStar) to discard biased data
(Papale et al. (2006) <doi:10.5194/bg-3-571-2006>).
Second, gaps in the data are filled based on information from environmental conditions
(Reichstein et al. (2005) <doi:10.1111/j.1365-2486.2005.001002.x>).
Third, the net flux of carbon dioxide is partitioned
into its gross fluxes in and out of the ecosystem by night-time
based and day-time based approaches
(Lasslop et al. (2010) <doi:10.1111/j.1365-2486.2009.02041.x>).
Author: Department for Biogeochemical Integration at MPI-BGC, Jena, Germany
[cph],
Thomas Wutzler [aut, cre],
Markus Reichstein [aut],
Antje Maria Moffat [aut, trl],
Olaf Menzer [ctb],
Mirco Migliavacca [aut],
Kerstin Sickel [ctb, trl],
Ladislav Å igut [ctb]
Maintainer: Thomas Wutzler <twutz@bgc-jena.mpg.de>
Diff between REddyProc versions 1.1.3 dated 2018-01-19 and 1.1.4 dated 2018-05-06
REddyProc-1.1.3/REddyProc/man/fAddNCFVar.Rd |only REddyProc-1.1.3/REddyProc/man/fLoadFluxNCInfo.Rd |only REddyProc-1.1.3/REddyProc/man/fLoadFluxNCIntoDataframe.Rd |only REddyProc-1.1.3/REddyProc/man/fReadTimeBerkeley.Rd |only REddyProc-1.1.3/REddyProc/man/fReadTimeSeveralCols.Rd |only REddyProc-1.1.3/REddyProc/tests/testthat/test_readNcdf.R |only REddyProc-1.1.4/REddyProc/DESCRIPTION | 18 REddyProc-1.1.4/REddyProc/MD5 | 34 REddyProc-1.1.4/REddyProc/NAMESPACE | 9 REddyProc-1.1.4/REddyProc/R/CheckVal.R |only REddyProc-1.1.4/REddyProc/R/DataFunctions.R | 269 ---- REddyProc-1.1.4/REddyProc/R/EddyGapfilling.R | 2 REddyProc-1.1.4/REddyProc/R/EddyUStarFilterDP.R | 6 REddyProc-1.1.4/REddyProc/R/FileHandling.R | 259 ---- REddyProc-1.1.4/REddyProc/R/imports.R | 2 REddyProc-1.1.4/REddyProc/R/logitnorm.R |only REddyProc-1.1.4/REddyProc/build/vignette.rds |binary REddyProc-1.1.4/REddyProc/inst/doc/useCase.html | 551 +++++++--- REddyProc-1.1.4/REddyProc/man/fLoadTXTIntoDataframe.Rd | 3 REddyProc-1.1.4/REddyProc/man/sEddyProc_sMDSGapFillAfterUstar.Rd | 5 REddyProc-1.1.4/REddyProc/man/usControlUstarEst.Rd | 2 REddyProc-1.1.4/REddyProc/tests/testthat/test_LightResponseCurveFitter.R | 4 22 files changed, 446 insertions(+), 718 deletions(-)
Title: A GUI for Planar Location Problems
Description: A GUI for the orloca package is provided as a Rcmdr plug-in. The package deals with location problems on the plane.
Author: Manuel Munoz-Marquez <manuel.munoz@uca.es>
Maintainer: Manuel Munoz-Marquez <manuel.munoz@uca.es>
Diff between RcmdrPlugin.orloca versions 4.1 dated 2013-01-21 and 4.5 dated 2018-05-06
ChangeLog |only DESCRIPTION | 27 ++++---- MD5 | 41 +++++++++--- NAMESPACE | 20 +++++- R/RcmdrPlugin.Orloca.R | 4 - R/RcmdrPlugin.Orloca.fg.R | 4 - R/globals.R |only build |only inst/doc |only inst/etc/menus.txt | 48 +++++++++------ inst/po/es/LC_MESSAGES/R-RcmdrPlugin.orloca.mo |binary man/RcmdrPlugin.orloca-package.Rd | 10 +-- man/RcmdrPlugin.orloca.es-package.Rd | 14 ++-- po/R-RcmdrPlugin.orloca-es.mo |binary po/R-RcmdrPlugin.orloca-es.po | 80 +++++-------------------- po/R-RcmdrPlugin.orloca.pot | 65 ++------------------ vignettes |only 17 files changed, 133 insertions(+), 180 deletions(-)
More information about RcmdrPlugin.orloca at CRAN
Permanent link
Title: Projection Based Clustering
Description: A clustering approach applicable to every projection method is proposed here [Thrun/Ultsch,2017] <DOI:10.13140/RG.2.2.13124.53124>. The two-dimensional scatter plot of any projection method can construct a topographic map which displays unapparent data structures by using distance and density information of the data. The generalized U*-matrix renders this visualization in the form of a topographic map, which can be used to automatically define the clusters of high-dimensional data. The whole system is based on the book "Projection-Based Clustering through Self-Organization and Swarm Intelligence" <DOI:10.1007/978-3-658-20540-9>. Selecting the correct projection method will result in a visualization in which mountains surround each cluster. The number of clusters can be determined by counting valleys on the topographic map. Most projection methods are wrappers for already available methods in R. By contrast, the neighbor retrieval visualizer (NeRV) is based on C++ source code of the 'dredviz' software package, and the Curvilinear Component Analysis (CCA) is translated from 'MATLAB' ('SOM Toolbox' 2.0) to R.
Author: Michael Thrun [aut, cre, cph],
Florian Lerch [aut],
Felix Pape [aut],
Kristian Nybo [cph],
Jarkko Venna [cph]
Maintainer: Michael Thrun <m.thrun@gmx.net>
Diff between ProjectionBasedClustering versions 1.0.6 dated 2018-01-31 and 1.0.7 dated 2018-05-06
DESCRIPTION | 12 ++++++------ MD5 | 6 +++--- NAMESPACE | 2 ++ man/ProjectionBasedClustering-package.Rd | 6 ++++++ 4 files changed, 17 insertions(+), 9 deletions(-)
More information about ProjectionBasedClustering at CRAN
Permanent link
Title: Display and Analyze ROC Curves
Description: Tools for visualizing, smoothing and comparing receiver operating characteristic (ROC curves). (Partial) area under the curve (AUC) can be compared with statistical tests based on U-statistics or bootstrap. Confidence intervals can be computed for (p)AUC or ROC curves.
Author: Xavier Robin [cre, aut] (<https://orcid.org/0000-0002-6813-3200>),
Natacha Turck [aut],
Alexandre Hainard [aut],
Natalia Tiberti [aut],
Frédérique Lisacek [aut],
Jean-Charles Sanchez [aut],
Markus Müller [aut],
Stefan Siegert [ctb] (Fast DeLong code)
Maintainer: Xavier Robin <pROC-cran@xavier.robin.name>
Diff between pROC versions 1.11.0 dated 2018-03-25 and 1.12.1 dated 2018-05-06
pROC-1.11.0/pROC/inst/extdata |only pROC-1.12.1/pROC/DESCRIPTION | 14 +- pROC-1.12.1/pROC/MD5 | 65 +++++---- pROC-1.12.1/pROC/NEWS | 13 + pROC-1.12.1/pROC/R/bootstrap.R | 67 +++++----- pROC-1.12.1/pROC/R/ci.R | 8 + pROC-1.12.1/pROC/R/ci.auc.R | 5 pROC-1.12.1/pROC/R/ci.coords.R | 4 pROC-1.12.1/pROC/R/ci.multiclass.auc.R | 5 pROC-1.12.1/pROC/R/delong.R | 15 +- pROC-1.12.1/pROC/R/power.roc.test.R | 19 -- pROC-1.12.1/pROC/R/roc.R | 27 ++-- pROC-1.12.1/pROC/R/roc.utils.R | 67 ++++++++-- pROC-1.12.1/pROC/R/roc.utils.percent.R |only pROC-1.12.1/pROC/R/smooth.R | 2 pROC-1.12.1/pROC/R/var.R | 6 pROC-1.12.1/pROC/README.md | 26 +++ pROC-1.12.1/pROC/inst/extra |only pROC-1.12.1/pROC/man/pROC-package.Rd | 43 ++---- pROC-1.12.1/pROC/man/roc.Rd | 6 pROC-1.12.1/pROC/src/delong.cpp | 5 pROC-1.12.1/pROC/src/perfsAll.cpp | 2 pROC-1.12.1/pROC/tests/testthat.R | 7 + pROC-1.12.1/pROC/tests/testthat/helper-coords-expected.R |only pROC-1.12.1/pROC/tests/testthat/helper-deLongPlacementsCpp-expected.R |only pROC-1.12.1/pROC/tests/testthat/helper-roc-expected.R |only pROC-1.12.1/pROC/tests/testthat/test-ci.auc.R | 10 + pROC-1.12.1/pROC/tests/testthat/test-ci.coords.R |only pROC-1.12.1/pROC/tests/testthat/test-coords.R | 2 pROC-1.12.1/pROC/tests/testthat/test-cov.R | 27 +++- pROC-1.12.1/pROC/tests/testthat/test-deLongPlacementsCpp.R | 3 pROC-1.12.1/pROC/tests/testthat/test-large.R |only pROC-1.12.1/pROC/tests/testthat/test-numeric-accuracy.R |only pROC-1.12.1/pROC/tests/testthat/test-plot.R | 1 pROC-1.12.1/pROC/tests/testthat/test-power.roc.test.R |only pROC-1.12.1/pROC/tests/testthat/test-roc.R | 8 - pROC-1.12.1/pROC/tests/testthat/test-roc.utils.percent.R |only pROC-1.12.1/pROC/tests/testthat/test-var.R | 6 38 files changed, 299 insertions(+), 164 deletions(-)
Title: Construction and Analysis of Matrix Population Models
Description: Construct and analyze projection matrix models from a demography study of marked individuals classified by age or stage. The package covers methods described in Matrix Population Models by Caswell (2001) and Quantitative Conservation Biology by Morris and Doak (2002).
Author: Chris Stubben, Brook Milligan, Patrick Nantel
Maintainer: Chris Stubben <chris.stubben@hci.utah.edu>
Diff between popbio versions 2.4.3 dated 2016-04-01 and 2.4.4 dated 2018-05-06
DESCRIPTION | 10 +++++----- MD5 | 11 +++++++---- R/colorguide.R |only R/eigen.analysis.R | 16 ++++++++-------- README.md |only inst/ChangeLog | 37 ++++++++++++++++++++----------------- man/colorguide.Rd |only man/eigen.analysis.Rd | 12 ++++++------ 8 files changed, 46 insertions(+), 40 deletions(-)
Title: Clustering Algorithm for Data Integration and Disease Subtyping
Description: Provides a robust approach for omics data integration and disease subtyping. It is an improved implementation of PINS - Perturbation clustering for data INtegration and disease Subtyping (Nguyen T, Tagett R, Diaz D, Draghici S, Genome Research, 2017, <doi:10.1101/gr.215129.116>). 'PINSPlus' supports both single and multiple data types. The software automatically determines the optimal number of clusters and then partitions the samples in a way such that the results are robust to noise and data perturbation. 'PINSPlus' is fast and it supports parallel computing on Windows, Linux, and Mac OS.
Author: Hung Nguyen, Sangam Shrestha and Tin Nguyen
Maintainer: Hung Nguyen <hungnp@nevada.unr.edu>
Diff between PINSPlus versions 1.0.0 dated 2018-03-16 and 1.0.1 dated 2018-05-06
PINSPlus-1.0.0/PINSPlus/man/PINS-package.Rd |only PINSPlus-1.0.1/PINSPlus/DESCRIPTION | 17 +- PINSPlus-1.0.1/PINSPlus/MD5 | 28 +-- PINSPlus-1.0.1/PINSPlus/R/clustering-algorithm-wrappers.R | 2 PINSPlus-1.0.1/PINSPlus/R/perturbation-clustering-helpers.R | 95 ++++++------ PINSPlus-1.0.1/PINSPlus/R/perturbation-clustering.R | 44 ++++- PINSPlus-1.0.1/PINSPlus/R/stopping-criteria-handlers.R | 74 +++++++-- PINSPlus-1.0.1/PINSPlus/R/subtyping-omics-data-helpers.R | 69 ++++++++ PINSPlus-1.0.1/PINSPlus/R/subtyping-omics-data.R | 57 ++----- PINSPlus-1.0.1/PINSPlus/inst/doc/PINSPlus.Rmd | 4 PINSPlus-1.0.1/PINSPlus/inst/doc/PINSPlus.pdf |binary PINSPlus-1.0.1/PINSPlus/man/PINSPlus-package.Rd |only PINSPlus-1.0.1/PINSPlus/man/PerturbationClustering.Rd | 17 +- PINSPlus-1.0.1/PINSPlus/man/SubtypingOmicsData.Rd | 13 - PINSPlus-1.0.1/PINSPlus/vignettes/PINSPlus.Rmd | 4 PINSPlus-1.0.1/PINSPlus/vignettes/PINSPlus.html | 18 +- 16 files changed, 282 insertions(+), 160 deletions(-)
Title: Programming with Big Data -- Interface to 'ZeroMQ'
Description: 'ZeroMQ' is a well-known library for high-performance
asynchronous messaging in scalable, distributed applications. This
package provides high level R wrapper functions to easily utilize
'ZeroMQ'. We mainly focus on interactive client/server programming
frameworks. For convenience, a minimal 'ZeroMQ' library (4.2.2)
is shipped with 'pbdZMQ', which can be used if no system installation
of 'ZeroMQ' is available. A few wrapper functions compatible with
'rzmq' are also provided.
Author: Wei-Chen Chen [aut, cre],
Drew Schmidt [aut],
Christian Heckendorf [aut] (file transfer),
George Ostrouchov [aut] (Mac OSX),
Whit Armstrong [ctb] (some functions are modified from the rzmq package
for backwards compatibility),
Brian Ripley [ctb] (C code of shellexec, and Solaris),
R Core team [ctb] (some functions are modified from the R source code),
Philipp A. [ctb] (Fedora),
Elliott Sales de Andrade [ctb] (sprintf),
Spencer Aiello [ctb] (windows conf)
Maintainer: Wei-Chen Chen <wccsnow@gmail.com>
Diff between pbdZMQ versions 0.3-2 dated 2018-01-31 and 0.3-3 dated 2018-05-06
ChangeLog | 4 ++++ DESCRIPTION | 10 +++++----- MD5 | 8 ++++---- inst/doc/pbdZMQ-guide.pdf |binary vignettes/pbdZMQ-include/01-introduction.tex | 2 +- 5 files changed, 14 insertions(+), 10 deletions(-)
Title: Programming with Big Data -- Remote Procedure Call
Description: A very light implementation yet secure for remote procedure calls
with unified interface via ssh (OpenSSH) or plink/plink.exe (PuTTY).
Author: Wei-Chen Chen [aut, cre],
Drew Schmidt [aut]
Maintainer: Wei-Chen Chen <wccsnow@gmail.com>
Diff between pbdRPC versions 0.2-0 dated 2018-02-01 and 0.2-1 dated 2018-05-06
ChangeLog | 5 +++-- DESCRIPTION | 10 +++++----- MD5 | 8 ++++---- inst/doc/pbdRPC-guide.pdf |binary vignettes/pbdRPC-include/06-port_forwarding.tex | 10 +++++----- 5 files changed, 17 insertions(+), 16 deletions(-)
Title: Optional Types and Pattern Matching
Description: Introduces some() and none, as well as match_with() from functional languages.
Author: Antoine Champion
Maintainer: Antoine Champion <antoine.champion@outlook.com>
Diff between optional versions 1.0 dated 2017-07-31 and 1.1 dated 2018-05-06
DESCRIPTION | 12 +- MD5 | 29 +++--- NAMESPACE | 1 NEWS.md |only R/optional.R | 110 ++++++++++++++++++------- README.md |only build/vignette.rds |binary inst/doc/UserGuide.R | 12 +- inst/doc/UserGuide.Rmd | 209 +++++++++++++++++++++++------------------------- inst/doc/UserGuide.html | 32 +++---- man/fallthrough.Rd |only man/make_opt.Rd | 1 man/match_with.Rd | 13 +- man/none.Rd | 1 man/opt_unwrap.Rd | 1 man/some.Rd | 1 vignettes/UserGuide.Rmd | 209 +++++++++++++++++++++++------------------------- 17 files changed, 339 insertions(+), 292 deletions(-)
Title: Tools for Building OLS Regression Models
Description: Tools for building OLS regression models . Includes
comprehensive regression output, heteroskedasticity tests, collinearity diagnostics,
residual diagnostics, measures of influence, model fit assessment and variable selection procedures.
Author: Aravind Hebbali [aut, cre]
Maintainer: Aravind Hebbali <hebbali.aravind@gmail.com>
Diff between olsrr versions 0.5.0 dated 2018-03-26 and 0.5.1 dated 2018-05-06
olsrr-0.5.0/olsrr/tests/testthat/test-error.R |only olsrr-0.5.0/olsrr/tests/testthat/test-plots.R |only olsrr-0.5.1/olsrr/DESCRIPTION | 14 olsrr-0.5.1/olsrr/MD5 | 185 ++-- olsrr-0.5.1/olsrr/NAMESPACE | 7 olsrr-0.5.1/olsrr/NEWS.md | 14 olsrr-0.5.1/olsrr/R/ols-added-variable-plot.R | 4 olsrr-0.5.1/olsrr/R/ols-all-possible-regression.R | 13 olsrr-0.5.1/olsrr/R/ols-bartlett-test.R | 6 olsrr-0.5.1/olsrr/R/ols-best-subsets-regression.R | 13 olsrr-0.5.1/olsrr/R/ols-breusch-pagan-test.R | 26 olsrr-0.5.1/olsrr/R/ols-collinearity-diagnostics.R | 12 olsrr-0.5.1/olsrr/R/ols-cooks-d-barplot.R | 4 olsrr-0.5.1/olsrr/R/ols-cooks-d-chart.R | 5 olsrr-0.5.1/olsrr/R/ols-correlations.R | 4 olsrr-0.5.1/olsrr/R/ols-dfbetas-panel.R | 6 olsrr-0.5.1/olsrr/R/ols-dffits-plot.R | 4 olsrr-0.5.1/olsrr/R/ols-diagnostics-panel.R | 6 olsrr-0.5.1/olsrr/R/ols-dsresid-vs-pred-plot.R | 4 olsrr-0.5.1/olsrr/R/ols-error-messages.R |only olsrr-0.5.1/olsrr/R/ols-f-test.R | 18 olsrr-0.5.1/olsrr/R/ols-hadi-plot.R | 4 olsrr-0.5.1/olsrr/R/ols-influence-measures.R | 16 olsrr-0.5.1/olsrr/R/ols-information-criteria.R | 46 - olsrr-0.5.1/olsrr/R/ols-normality-tests.R | 5 olsrr-0.5.1/olsrr/R/ols-observed-vs-predicted-plot.R | 4 olsrr-0.5.1/olsrr/R/ols-potential-residual-plot.R | 4 olsrr-0.5.1/olsrr/R/ols-pure-error-anova.R | 4 olsrr-0.5.1/olsrr/R/ols-regression.R | 8 olsrr-0.5.1/olsrr/R/ols-resid-vs-regressor-plot-shiny.R | 5 olsrr-0.5.1/olsrr/R/ols-residual-boxplot.R | 4 olsrr-0.5.1/olsrr/R/ols-residual-fit-spread-plot.R | 14 olsrr-0.5.1/olsrr/R/ols-residual-histogram.R | 4 olsrr-0.5.1/olsrr/R/ols-residual-plus-component-plot.R | 4 olsrr-0.5.1/olsrr/R/ols-residual-qqplot.R | 4 olsrr-0.5.1/olsrr/R/ols-residual-vs-predicted-plot.R | 4 olsrr-0.5.1/olsrr/R/ols-residual-vs-regressor-plot.R | 4 olsrr-0.5.1/olsrr/R/ols-response-profile.R | 4 olsrr-0.5.1/olsrr/R/ols-rstud-vs-lev-plot.R | 4 olsrr-0.5.1/olsrr/R/ols-score-test.R | 18 olsrr-0.5.1/olsrr/R/ols-standardized-residual-chart.R | 4 olsrr-0.5.1/olsrr/R/ols-stepaic-backward-regression.R | 18 olsrr-0.5.1/olsrr/R/ols-stepaic-both-regression.R | 17 olsrr-0.5.1/olsrr/R/ols-stepaic-forward-regression.R | 18 olsrr-0.5.1/olsrr/R/ols-stepwise-backward-regression.R | 33 olsrr-0.5.1/olsrr/R/ols-stepwise-forward-regression.R | 72 - olsrr-0.5.1/olsrr/R/ols-stepwise-regression.R | 92 -- olsrr-0.5.1/olsrr/R/ols-studentized-residual-plot.R | 4 olsrr-0.5.1/olsrr/R/ols-version.R | 5 olsrr-0.5.1/olsrr/R/zzz.R | 23 olsrr-0.5.1/olsrr/README.md | 3 olsrr-0.5.1/olsrr/build/vignette.rds |binary olsrr-0.5.1/olsrr/inst/application/logic/logic_inflobs2.R | 20 olsrr-0.5.1/olsrr/inst/application/logic/logic_mfit2.R | 10 olsrr-0.5.1/olsrr/inst/application/logic/logic_mselection2.R | 18 olsrr-0.5.1/olsrr/inst/application/logic/logic_resdiagtrial.R | 10 olsrr-0.5.1/olsrr/inst/application/ui/ui_collin.R | 2 olsrr-0.5.1/olsrr/inst/application/ui/ui_dataoptions.R | 2 olsrr-0.5.1/olsrr/inst/application/ui/ui_hetero.R | 8 olsrr-0.5.1/olsrr/inst/application/ui/ui_regdiag.R | 6 olsrr-0.5.1/olsrr/inst/application/ui/ui_regress.R | 2 olsrr-0.5.1/olsrr/inst/doc/heteroskedasticity.html | 334 +------- olsrr-0.5.1/olsrr/inst/doc/influence_measures.html | 322 +------ olsrr-0.5.1/olsrr/inst/doc/intro.html | 330 +------- olsrr-0.5.1/olsrr/inst/doc/reference-media.html | 184 ---- olsrr-0.5.1/olsrr/inst/doc/regression_diagnostics.html | 326 +------ olsrr-0.5.1/olsrr/inst/doc/residual_diagnostics.html | 302 +------ olsrr-0.5.1/olsrr/inst/doc/variable_selection.html | 412 ++-------- olsrr-0.5.1/olsrr/man/ols_plot_dfbetas.Rd | 2 olsrr-0.5.1/olsrr/man/ols_plot_diagnostics.Rd | 2 olsrr-0.5.1/olsrr/man/ols_step_all_possible.Rd | 4 olsrr-0.5.1/olsrr/man/ols_step_backward_aic.Rd | 4 olsrr-0.5.1/olsrr/man/ols_step_backward_p.Rd | 4 olsrr-0.5.1/olsrr/man/ols_step_best_subset.Rd | 4 olsrr-0.5.1/olsrr/man/ols_step_both_aic.Rd | 3 olsrr-0.5.1/olsrr/man/ols_step_both_p.Rd | 4 olsrr-0.5.1/olsrr/man/ols_step_forward_aic.Rd | 4 olsrr-0.5.1/olsrr/man/ols_step_forward_p.Rd | 6 olsrr-0.5.1/olsrr/man/ols_test_bartlett.Rd | 4 olsrr-0.5.1/olsrr/tests/testthat/test-all-possible.R | 11 olsrr-0.5.1/olsrr/tests/testthat/test-bartlett.R | 7 olsrr-0.5.1/olsrr/tests/testthat/test-best-subsets.R | 11 olsrr-0.5.1/olsrr/tests/testthat/test-breusch-pagan.R | 48 - olsrr-0.5.1/olsrr/tests/testthat/test-collindiag.R | 23 olsrr-0.5.1/olsrr/tests/testthat/test-correlations.R | 7 olsrr-0.5.1/olsrr/tests/testthat/test-f.R | 38 olsrr-0.5.1/olsrr/tests/testthat/test-loftest.R | 15 olsrr-0.5.1/olsrr/tests/testthat/test-regress.R | 52 - olsrr-0.5.1/olsrr/tests/testthat/test-score.R | 38 olsrr-0.5.1/olsrr/tests/testthat/test-stapaic-both.R | 10 olsrr-0.5.1/olsrr/tests/testthat/test-step-backward.R | 17 olsrr-0.5.1/olsrr/tests/testthat/test-step-forward.R | 17 olsrr-0.5.1/olsrr/tests/testthat/test-stepaic-b.R | 11 olsrr-0.5.1/olsrr/tests/testthat/test-stepaic-f.R | 11 olsrr-0.5.1/olsrr/tests/testthat/test-stepwise.R | 19 95 files changed, 737 insertions(+), 2721 deletions(-)
Title: Estimation of Ordered Generalized Linear Models
Description: Ordered models such as ordered probit and ordered logit presume that the error variance is constant across observations. In the case that this assumption does not hold estimates of marginal effects are typically biased (Weiss (1997)). This package allows for generalization of ordered probit and ordered logit models by allowing the user to specify a model for the variance. Furthermore, the package includes functions to calculate the marginal effects. Wrapper functions to estimate the standard limited dependent variable models are also included.
Author: Nathan Carroll
Maintainer: Nathan Carroll <nathan.carroll@ur.de>
Diff between oglmx versions 2.0.0.3 dated 2017-03-12 and 3.0.0.0 dated 2018-05-06
oglmx-2.0.0.3/oglmx/R/oglmx-functions.R |only oglmx-2.0.0.3/oglmx/R/oglmx.margins-functions.R |only oglmx-3.0.0.0/oglmx/DESCRIPTION | 8 +-- oglmx-3.0.0.0/oglmx/MD5 | 32 +++++++++---- oglmx-3.0.0.0/oglmx/R/MiscFuncs.R |only oglmx-3.0.0.0/oglmx/R/WrapperFuncs.R |only oglmx-3.0.0.0/oglmx/R/calcDerivatives.R |only oglmx-3.0.0.0/oglmx/R/genOutput.R |only oglmx-3.0.0.0/oglmx/R/marginsCalc.R |only oglmx-3.0.0.0/oglmx/R/oglmx_fit.R |only oglmx-3.0.0.0/oglmx/R/oglmx_main.R |only oglmx-3.0.0.0/oglmx/R/problinkfunctions.R |only oglmx-3.0.0.0/oglmx/R/updateComponents.R |only oglmx-3.0.0.0/oglmx/build/partial.rdb |binary oglmx-3.0.0.0/oglmx/build/vignette.rds |binary oglmx-3.0.0.0/oglmx/inst/doc/oglmxVignette.pdf |binary oglmx-3.0.0.0/oglmx/man/D_continuous.margins.Rd |only oglmx-3.0.0.0/oglmx/man/D_discrete.margins.Rd |only oglmx-3.0.0.0/oglmx/man/Various.Rd |only oglmx-3.0.0.0/oglmx/man/continuous.margin.Rd |only oglmx-3.0.0.0/oglmx/man/derivatives.Rd |only oglmx-3.0.0.0/oglmx/man/discrete.margin.Rd |only oglmx-3.0.0.0/oglmx/man/getEtas.Rd |only oglmx-3.0.0.0/oglmx/man/logit.reg.Rd | 2 oglmx-3.0.0.0/oglmx/man/margins.oglmx.Rd | 14 ++--- oglmx-3.0.0.0/oglmx/man/oglmx.Rd | 57 ++++++++++++------------ 26 files changed, 64 insertions(+), 49 deletions(-)
Title: Nested Loop Cross Validation
Description: Nested loop cross validation for classification purposes for misclassification error rate estimation.
The package supports several methodologies for feature selection: random forest, Student t-test, limma,
and provides an interface to the following classification methods in the 'MLInterfaces' package: linear,
quadratic discriminant analyses, random forest, bagging, prediction analysis for microarray, generalized
linear model, support vector machine (svm and ksvm). Visualizations to assess the quality of
the classifier are included: plot of the ranks of the features, scores plot for a specific
classification algorithm and number of features, misclassification rate
for the different number of features and classification algorithms tested and ROC plot.
For further details about the methodology, please check:
Markus Ruschhaupt, Wolfgang Huber, Annemarie Poustka, and Ulrich Mansmann (2004)
<doi:10.2202/1544-6115.1078>.
Author: Willem Talloen, Tobias Verbeke
Maintainer: Laure Cougnaud <laure.cougnaud@openanalytics.eu>
Diff between nlcv versions 0.3.2 dated 2017-10-19 and 0.3.3 dated 2018-05-06
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- build/vignette.rds |binary inst/NEWS | 2 ++ inst/doc/nlcv.pdf |binary vignettes/vignetteNLCV.bib | 8 ++++---- 6 files changed, 15 insertions(+), 13 deletions(-)
Title: Japanese Utility Functions and Data
Description: Japan-specific data is sometimes too unhandy for R users to manage. The utility functions and data in this package disencumber us from such an unnecessary burden.
Author: Susumu Tanimura <aruminat@gmail.com> [aut, cre],
Hironobu Takahashi [cph],
Hajime Baba [cph],
Takatsugu Nokubi [cph]
Maintainer: Susumu Tanimura <aruminat@gmail.com>
Diff between Nippon versions 0.6.5 dated 2017-11-28 and 0.7 dated 2018-05-06
Nippon-0.6.5/Nippon/R/JapanPrefecturesMap.R |only Nippon-0.6.5/Nippon/inst/shapes |only Nippon-0.6.5/Nippon/man/JapanPrefecturesMap.Rd |only Nippon-0.7/Nippon/ChangeLog | 9 +++++++++ Nippon-0.7/Nippon/DESCRIPTION | 11 +++++------ Nippon-0.7/Nippon/MD5 | 18 ++++++++---------- Nippon-0.7/Nippon/NAMESPACE | 4 ---- Nippon-0.7/Nippon/R/kansu2arabic.R |only Nippon-0.7/Nippon/R/zen2han.R | 5 ++++- Nippon-0.7/Nippon/man/Nippon-deprecated.Rd |only Nippon-0.7/Nippon/man/kansu2arabic.Rd |only Nippon-0.7/Nippon/man/sanitizeZenkaku.Rd | 2 +- 12 files changed, 27 insertions(+), 22 deletions(-)
Title: Regression of Network Responses
Description: Regress network responses (both directed and undirected) onto covariates of interest that may be actor-, relation-, or network-valued. In addition, compute principled variance estimates of the coefficients assuming that the errors are jointly exchangeable. Missing data is accommodated. Additionally implements building and inversion of covariance matrices under joint exchangeability, and generates random covariance matrices of this class. For more detail on methods, see Marrs, Fosdick, and McCormick (2017) <arXiv:1701.05530>.
Author: Frank W. Marrs [aut, cre],
Bailey K. Fosdick [aut],
Tyler H. McCormick [aut]
Maintainer: Frank W. Marrs <frank.marrs@colostate.edu>
Diff between netregR versions 0.3.0 dated 2018-04-10 and 0.3.1 dated 2018-05-06
DESCRIPTION | 6 +- MD5 | 15 +++-- R/helpers.R | 88 +++++++++++++++++++++++++++++++++- R/matrix_ops.R | 30 ++++++----- build/vignette.rds |binary inst/doc/netregR_vignette_single.Rmd | 4 - inst/doc/netregR_vignette_single.html | 36 ++++++------- man/eigen_exch.Rd |only vignettes/netregR_vignette_single.Rmd | 4 - 9 files changed, 135 insertions(+), 48 deletions(-)
Title: Spatial Covariance Functions
Description: R functions for analyzing spatial (cross-)covariance: the
nonparametric (cross-)covariance function, the spline correlogram, the
nonparametric phase coherence function, local indicators of spatial
association (LISA), (Mantel) correlogram, (Partial) Mantel test.
Author: Ottar N. Bjornstad [aut, cre],
Jun Cai [ctb]
Maintainer: Ottar N. Bjornstad <onb1@psu.edu>
Diff between ncf versions 1.2-3 dated 2018-04-19 and 1.2-4 dated 2018-05-06
ncf-1.2-3/ncf/man/plot.lisa.nc.Rd |only ncf-1.2-4/ncf/CHANGES | 7 +- ncf-1.2-4/ncf/DESCRIPTION | 17 +++--- ncf-1.2-4/ncf/MD5 | 27 +++++----- ncf-1.2-4/ncf/NAMESPACE | 7 ++ ncf-1.2-4/ncf/R/Sncf.R | 20 +++++-- ncf-1.2-4/ncf/R/Sncf2D.R | 33 ++++++------- ncf-1.2-4/ncf/R/correlog.R | 13 +++-- ncf-1.2-4/ncf/R/lisa.R | 91 +++++++----------------------------- ncf-1.2-4/ncf/R/mSynch.R | 5 + ncf-1.2-4/ncf/R/spline-correlog.R | 10 ++- ncf-1.2-4/ncf/R/spline-correlog2D.R | 3 - ncf-1.2-4/ncf/R/utilities.R | 8 ++- ncf-1.2-4/ncf/man/lisa.nc.Rd | 4 - ncf-1.2-4/ncf/man/print.mSynch.Rd | 1 15 files changed, 109 insertions(+), 137 deletions(-)
Title: Multivariate Ordinal Regression Models
Description: A flexible framework for fitting multivariate
ordinal regression models with composite likelihood methods.
Author: Rainer Hirk [aut, cre],
Kurt Hornik [aut],
Laura Vana [aut],
Alan Genz [ctb] (Fortran Code)
Maintainer: Rainer Hirk <rhirk@wu.ac.at>
Diff between mvord versions 0.2.1 dated 2017-11-29 and 0.3.0 dated 2018-05-06
mvord-0.2.1/mvord/data/data_cr_mvord.rda |only mvord-0.2.1/mvord/data/data_cr_mvord2.rda |only mvord-0.2.1/mvord/data/data_toy_example.rda |only mvord-0.2.1/mvord/data/datalist |only mvord-0.2.1/mvord/man/data_cr_mvord.Rd |only mvord-0.2.1/mvord/man/data_cr_mvord2.Rd |only mvord-0.2.1/mvord/man/data_toy_example.Rd |only mvord-0.2.1/mvord/man/get.prob.Rd |only mvord-0.2.1/mvord/man/get_error_struct.Rd |only mvord-0.2.1/mvord/man/marginal.predict.Rd |only mvord-0.2.1/mvord/man/mvord2.Rd |only mvord-0.3.0/mvord/DESCRIPTION | 8 mvord-0.3.0/mvord/MD5 | 124 mvord-0.3.0/mvord/NAMESPACE | 131 mvord-0.3.0/mvord/NEWS | 90 mvord-0.3.0/mvord/R/MMO.R |only mvord-0.3.0/mvord/R/error_struct.R | 194 mvord-0.3.0/mvord/R/mvlinks.R | 16 mvord-0.3.0/mvord/R/mvord.R | 2428 +++++------ mvord-0.3.0/mvord/R/mvord_fit.R | 530 +- mvord-0.3.0/mvord/R/predict.R | 908 ++-- mvord-0.3.0/mvord/R/se.R | 609 +- mvord-0.3.0/mvord/R/utilities.R | 1154 +++-- mvord-0.3.0/mvord/build/vignette.rds |binary mvord-0.3.0/mvord/data/data_cr.rda |only mvord-0.3.0/mvord/data/data_cr_panel.rda |binary mvord-0.3.0/mvord/data/data_mvord_toy.rda |only mvord-0.3.0/mvord/inst/doc/vignette_mvord.R | 888 ++-- mvord-0.3.0/mvord/inst/doc/vignette_mvord.Rnw | 3785 ++++++++---------- mvord-0.3.0/mvord/inst/doc/vignette_mvord.pdf |binary mvord-0.3.0/mvord/man/coef.mvord.Rd | 34 mvord-0.3.0/mvord/man/constraints.Rd | 36 mvord-0.3.0/mvord/man/data_cr.Rd |only mvord-0.3.0/mvord/man/data_cr_panel.Rd | 53 mvord-0.3.0/mvord/man/data_mvord.Rd | 73 mvord-0.3.0/mvord/man/data_mvord2.Rd | 60 mvord-0.3.0/mvord/man/data_mvord_panel.Rd | 58 mvord-0.3.0/mvord/man/data_mvord_toy.Rd |only mvord-0.3.0/mvord/man/error_struct.Rd | 75 mvord-0.3.0/mvord/man/error_structure.Rd |only mvord-0.3.0/mvord/man/fitted.mvord.Rd | 34 mvord-0.3.0/mvord/man/joint_probabilities.Rd |only mvord-0.3.0/mvord/man/logLik.mvord.Rd | 34 mvord-0.3.0/mvord/man/marginal_predict.Rd |only mvord-0.3.0/mvord/man/model.matrix.mvord.Rd | 34 mvord-0.3.0/mvord/man/mvlinks.Rd | 176 mvord-0.3.0/mvord/man/mvord-package.Rd | 46 mvord-0.3.0/mvord/man/mvord.Rd | 975 ++-- mvord-0.3.0/mvord/man/mvord.control.Rd |only mvord-0.3.0/mvord/man/names_constraints.Rd | 36 mvord-0.3.0/mvord/man/nobs.mvord.Rd | 34 mvord-0.3.0/mvord/man/predict.mvord.Rd | 68 mvord-0.3.0/mvord/man/print.error_struct.Rd | 32 mvord-0.3.0/mvord/man/print.mvord.Rd | 38 mvord-0.3.0/mvord/man/pseudo.R.squared.Rd |only mvord-0.3.0/mvord/man/summary.mvord.Rd | 42 mvord-0.3.0/mvord/man/terms.mvord.Rd | 34 mvord-0.3.0/mvord/man/thresholds.Rd | 40 mvord-0.3.0/mvord/man/vcov.mvord.Rd | 34 mvord-0.3.0/mvord/tests/check_methods.R | 131 mvord-0.3.0/mvord/tests/check_mvord_data.R | 55 mvord-0.3.0/mvord/tests/check_mvord_errors.R | 72 mvord-0.3.0/mvord/tests/check_toy_example.R | 1013 ++-- mvord-0.3.0/mvord/tests/check_transf_sigmas.R | 26 mvord-0.3.0/mvord/tests/check_transf_thresholds.R | 81 mvord-0.3.0/mvord/vignettes/data_SRHS_long.rda |only mvord-0.3.0/mvord/vignettes/mvord.bib | 2692 ++++++------ mvord-0.3.0/mvord/vignettes/res1.rda |only mvord-0.3.0/mvord/vignettes/res2.rda |only mvord-0.3.0/mvord/vignettes/res_AR1_probit.rda |binary mvord-0.3.0/mvord/vignettes/res_cor_logit.rda |binary mvord-0.3.0/mvord/vignettes/res_cor_probit_simple.rda |only mvord-0.3.0/mvord/vignettes/res_essay.rda |only mvord-0.3.0/mvord/vignettes/res_srhs.rda |only mvord-0.3.0/mvord/vignettes/vignette_mvord-018.pdf |only mvord-0.3.0/mvord/vignettes/vignette_mvord-052.pdf |only mvord-0.3.0/mvord/vignettes/vignette_mvord-053.pdf |only mvord-0.3.0/mvord/vignettes/vignette_mvord.Rnw | 3785 ++++++++---------- 78 files changed, 10646 insertions(+), 10120 deletions(-)
Title: Multiblock Sparse Multivariable Analysis
Description: Several functions can be used to analyze multiblock multivariable data. If the input is a single matrix, then principal components analysis (PCA) is implemented. If the input is a list of matrices, then multiblock PCA is implemented. If the input is two matrices, for exploratory and objective variables, then partial least squares (PLS) analysis is implemented. If the input is two lists of matrices, for exploratory and objective variables, then multiblock PLS analysis is implemented. Additionally, if an extra outcome variable is specified, then a supervised version of the methods above is implemented. For each method, sparse modeling is also incorporated. Functions for selecting the number of components and regularized parameters are also provided.
Author: Atsushi Kawaguchi
Maintainer: Atsushi Kawaguchi <kawa_a24@yahoo.co.jp>
Diff between msma versions 1.0 dated 2018-03-01 and 1.1 dated 2018-05-06
DESCRIPTION | 10 +-- MD5 | 18 +++-- NAMESPACE | 9 ++ R/src.r | 162 +++++++++++++++++++++++++++++++++++++++++++++------ build |only inst/doc |only man/msma-internal.Rd | 4 + man/msma.Rd | 3 man/plot.msma.Rd |only man/summary.msma.Rd | 1 vignettes |only 11 files changed, 176 insertions(+), 31 deletions(-)
Title: Multivariate Synthetic Control Method Using Time Series
Description: Three generalizations of the synthetic control method (which has
already an implementation in package 'Synth') are implemented: first,
'MSCMT' allows for using multiple outcome variables, second, time series
can be supplied as economic predictors, and third, a well-defined
cross-validation approach can be used.
Much effort has been taken to make the implementation as stable as possible
(including edge cases) without losing computational efficiency.
A detailed description of the main algorithms is given in
Becker and Klößner (2018) <doi:10.1016/j.ecosta.2017.08.002>.
Author: Martin Becker [aut, cre] (<https://orcid.org/0000-0003-2336-9751>),
Stefan Klößner [aut],
Karline Soetaert [com],
LAPACK authors [cph]
Maintainer: Martin Becker <martin.becker@mx.uni-saarland.de>
Diff between MSCMT versions 1.3.2 dated 2018-02-19 and 1.3.3 dated 2018-05-06
DESCRIPTION | 8 ++++---- MD5 | 18 +++++++++--------- NEWS | 12 ++++++++++++ R/mscmt.r | 2 +- build/partial.rdb |binary build/vignette.rds |binary inst/REFERENCES.bib | 9 ++++++--- inst/doc/WorkingWithMSCMT.Rmd | 4 ++-- inst/doc/WorkingWithMSCMT.html | 32 ++++++++++++++++---------------- vignettes/WorkingWithMSCMT.Rmd | 4 ++-- 10 files changed, 52 insertions(+), 37 deletions(-)
Title: Multiple Objective Latin Hypercube Design
Description: Generate the optimal maximin distance, minimax distance (only for low dimensions), and maximum projection designs within the class of Latin hypercube designs efficiently for computer experiments. Generate Pareto front optimal designs for each two of the three criteria and all the three criteria within the class of Latin hypercube designs efficiently. Provide criterion computing functions. References of this package can be found in Morris, M. D. and Mitchell, T. J. (1995) <doi:10.1016/0378-3758(94)00035-T>, Lu Lu and Christine M. Anderson-CookTimothy J. Robinson (2011) <doi:10.1198/Tech.2011.10087>, Joseph, V. R., Gul, E., and Ba, S. (2015) <doi:10.1093/biomet/asv002>.
Author: Ruizhe Hou , Lu Lu
Maintainer: Ruizhe Hou <houruizhe1210@gmail.com>
Diff between MOLHD versions 0.1 dated 2017-11-08 and 0.2 dated 2018-05-06
DESCRIPTION | 12 ++++++------ MD5 | 10 +++++----- NAMESPACE | 2 ++ R/function.r | 15 +++++++-------- R/pfMm&pfpm.r | 8 ++++---- man/MOLHD-package.Rd | 4 ++-- 6 files changed, 26 insertions(+), 25 deletions(-)
Title: Pipeline for GWAS Using MLMM
Description: Pipeline for Genome-Wide Association Study using Multi-Locus Mixed Model from Segura V, Vilhjálmsson BJ et al. (2012) <doi:10.1038/ng.2314>. The pipeline include detection of associated SNPs with MLMM, model selection by lowest eBIC, estimation of the effects of the SNPs in the selected model and graphical functions.
Author: Fanny Bonnafous [aut], Olivier Guillaume[aut, cre], Brigitte Mangin [aut], Prune Pegot-Espagnet [aut], Vincent Segura [aut], Bjarni J. Vilhjalmsson [aut]
Maintainer: Olivier Guillaume <olivier.guillaume@inra.fr>
Diff between mlmm.gwas versions 1.0.2 dated 2018-04-03 and 1.0.3 dated 2018-05-06
DESCRIPTION | 6 +- MD5 | 17 +++--- NEWS |only R/eBIC_allmodels_withlmekin_ML.r | 9 ++- R/plots.r | 7 +- build/vignette.rds |binary data/mlmm.gwas.AD.RData |binary inst/doc/gwas-manual.Rmd | 2 inst/doc/gwas-manual.html | 110 ++++++++++++++++++++++----------------- vignettes/gwas-manual.Rmd | 2 10 files changed, 89 insertions(+), 64 deletions(-)
Title: Handling Missing Values with Multivariate Data Analysis
Description: Imputation of incomplete continuous or categorical datasets; Missing values are imputed with a principal component analysis (PCA), a multiple correspondence analysis (MCA) model or a multiple factor analysis (MFA) model; Perform multiple imputation with and in PCA or MCA.
Author: Francois Husson, Julie Josse
Maintainer: Francois Husson <husson@agrocampus-ouest.fr>
Diff between missMDA versions 1.11 dated 2017-03-16 and 1.12 dated 2018-05-06
DESCRIPTION | 13 +++-- MD5 | 31 +++++++++----- NAMESPACE | 4 - R/MIPCA.R | 11 ++--- R/estim_ncpFAMD.R | 5 +- R/estim_ncpMCA.R | 13 ++--- R/imputeCA.r | 105 +++++++++++++++++++++++------------------------- R/imputeMFA.R | 6 -- R/imputeMultilevel.R |only R/plot.MIMCA.R | 8 +-- R/plot.MIPCA.R | 12 ++--- build |only inst/doc |only man/imputeFAMD.Rd | 2 man/imputeMultilevel.Rd |only man/missMDA-package.Rd | 16 +++++-- vignettes |only 17 files changed, 120 insertions(+), 106 deletions(-)
Title: Fitting the Mixture of Experts Latent Position Cluster Model to
Network Data
Description: Fits the mixture of experts latent position cluster model to network data to cluster nodes into subgroups, while incorporating covariate information, in a mixture of experts model setting.
Author: Isobel Claire Gormley and Thomas Brendan Murphy
Maintainer: Isobel Claire Gormley <claire.gormley@ucd.ie>
Diff between MEclustnet versions 1.1 dated 2017-01-26 and 1.2 dated 2018-05-06
DESCRIPTION | 12 - MD5 | 34 ++-- R/MEclustnet-internal.R | 260 ++++++++++++++++------------------- build/partial.rdb |binary data/lawyers.adjacency.advice.rda |binary data/lawyers.adjacency.coworkers.rda |binary data/lawyers.adjacency.friends.rda |binary data/lawyers.covariates.rda |binary data/us.twitter.adjacency.rda |binary data/us.twitter.covariates.rda |binary man/MEclustnet-package.Rd | 49 +----- man/MEclustnet.Rd | 4 man/formatting.covars.Rd | 7 man/labelswitch.Rd | 7 man/lawyers.adjacency.coworkers.Rd | 4 man/lawyers.adjacency.friends.Rd | 4 man/plotMEclustnet.Rd | 55 +------ man/summaryMEclustnet.Rd | 48 +----- 18 files changed, 191 insertions(+), 293 deletions(-)
Title: Multivariate and Propensity Score Matching with Balance
Optimization
Description: Provides functions for multivariate and propensity score matching
and for finding optimal balance based on a genetic search algorithm.
A variety of univariate and multivariate metrics to
determine if balance has been obtained are also provided.
Author: Jasjeet Singh Sekhon <sekhon@berkeley.edu>
Maintainer: Jasjeet Singh Sekhon <sekhon@berkeley.edu>
Diff between Matching versions 4.9-2 dated 2015-12-25 and 4.9-3 dated 2018-05-06
.Rinstignore |only DESCRIPTION | 8 ++++---- MD5 | 10 ++++++---- NAMESPACE | 2 +- README.md |only src/init.c |only src/matching.cc | 18 +++++++++--------- src/scythematrix.cc | 8 ++++---- 8 files changed, 24 insertions(+), 22 deletions(-)
Title: Local Interpretable (Model-Agnostic) Visual Explanations
Description: Interpretability of complex machine learning models is a growing concern.
This package helps to understand key factors that drive the
decision made by complicated predictive model (so called black box model).
This is achieved through local approximations that are either based on
additive regression like model or CART like model that allows for
higher interactions. The methodology is based on Tulio Ribeiro, Singh, Guestrin (2016) <doi:10.1145/2939672.2939778>.
More details can be found in Staniak, Biecek (2018) <arXiv:1804.01955>.
Author: Mateusz Staniak [cre, aut],
Przemysław Biecek [aut]
Maintainer: Mateusz Staniak <mateusz.staniak@math.uni.wroc.pl>
Diff between live versions 1.4.2 dated 2018-04-03 and 1.5.3 dated 2018-05-06
live-1.4.2/live/tests/testthat/Rplots.pdf |only live-1.5.3/live/DESCRIPTION | 11 - live-1.5.3/live/MD5 | 79 +++++--- live-1.5.3/live/NAMESPACE | 16 + live-1.5.3/live/NEWS.md | 22 ++ live-1.5.3/live/R/explain.R | 215 ++++++++++++----------- live-1.5.3/live/R/explore.R | 173 ++++++++---------- live-1.5.3/live/R/generics.R |only live-1.5.3/live/R/helpers.R |only live-1.5.3/live/R/kernels.R |only live-1.5.3/live/R/live.R | 28 +- live-1.5.3/live/R/old_code.R |only live-1.5.3/live/R/plot.R |only live-1.5.3/live/README.md | 19 +- live-1.5.3/live/build/vignette.rds |binary live-1.5.3/live/inst/CITATION |only live-1.5.3/live/inst/doc/wine_quality.R | 15 - live-1.5.3/live/inst/doc/wine_quality.Rmd | 48 ++--- live-1.5.3/live/inst/doc/wine_quality.html | 32 +-- live-1.5.3/live/man/add_predictions.Rd | 7 live-1.5.3/live/man/add_predictions2.Rd |only live-1.5.3/live/man/calculate_weights.Rd |only live-1.5.3/live/man/check_conditions.Rd | 2 live-1.5.3/live/man/check_for_na.Rd | 2 live-1.5.3/live/man/create_task.Rd | 2 live-1.5.3/live/man/create_task2.Rd |only live-1.5.3/live/man/euclidean_kernel.Rd |only live-1.5.3/live/man/fit_explanation.Rd | 7 live-1.5.3/live/man/fit_explanation2.Rd |only live-1.5.3/live/man/gaussian_kernel.Rd |only live-1.5.3/live/man/generate_neighbourhood.Rd | 2 live-1.5.3/live/man/generate_neighbourhood2.Rd |only live-1.5.3/live/man/give_predictions.Rd | 2 live-1.5.3/live/man/give_predictions2.Rd |only live-1.5.3/live/man/identity_kernel.Rd |only live-1.5.3/live/man/live.Rd | 20 +- live-1.5.3/live/man/permutation_neighbourhood.Rd |only live-1.5.3/live/man/plot_explanation.Rd | 7 live-1.5.3/live/man/plot_explanation2.Rd |only live-1.5.3/live/man/plot_regression.Rd | 2 live-1.5.3/live/man/plot_regression2.Rd |only live-1.5.3/live/man/print.live_explainer.Rd |only live-1.5.3/live/man/print.live_explorer.Rd |only live-1.5.3/live/man/sample_locally.Rd | 12 + live-1.5.3/live/man/sample_locally2.Rd |only live-1.5.3/live/man/select_variables.Rd |only live-1.5.3/live/man/set_constant_dates.Rd | 2 live-1.5.3/live/man/set_constant_variables.Rd |only live-1.5.3/live/man/wine.Rd | 2 live-1.5.3/live/tests/testthat/test_explaining.R | 14 - live-1.5.3/live/tests/testthat/test_old.R |only live-1.5.3/live/tests/testthat/test_simulating.R | 22 +- live-1.5.3/live/vignettes/wine_quality.Rmd | 48 ++--- 53 files changed, 459 insertions(+), 352 deletions(-)
Title: A High-Level R Interface for Neural Nets
Description: Adds a high-level interface for 'keras' neural nets. kms() fits neural net and accepts R formulas to aid data munging and hyperparameter selection. kms() can optionally accept a compiled keras_sequential_model() from 'keras'.
kms() accepts a number of parameters (like loss and optimizer) and splits the data into sparse test and training matrices. kms() returns a single object with predictions, a confusion matrix, and function call details.
Author: Pete Mohanty [aut, cre]
Maintainer: Pete Mohanty <pete.mohanty@gmail.com>
Diff between kerasformula versions 0.1.1 dated 2018-01-24 and 1.0.0 dated 2018-05-06
DESCRIPTION | 6 MD5 | 24 +-- NAMESPACE | 9 + R/confusion.R | 15 + R/kms.R | 344 ++++++++++++++++++++++++++++++++++++--------- R/predict.R | 110 ++++++++++++-- inst/doc/kerasformula.R | 44 ++++- inst/doc/kerasformula.Rmd | 69 ++++++--- inst/doc/kerasformula.html | 65 ++++++-- man/confusion.Rd | 4 man/kms.Rd | 36 +++- man/predict.kms_fit.Rd | 12 + vignettes/kerasformula.Rmd | 69 ++++++--- 13 files changed, 628 insertions(+), 179 deletions(-)
Title: JSON for Linking Data
Description: JSON-LD is a light-weight syntax for expressing linked data. It is primarily
intended for web-based programming environments, interoperable web services and for
storing linked data in JSON-based databases. This package provides bindings to the
JavaScript library for converting, expanding and compacting JSON-LD documents.
Author: Jeroen Ooms [aut, cre] (<https://orcid.org/0000-0002-4035-0289>),
rOpenSci [fnd] (https://ropensci.org)
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>
Diff between jsonld versions 1.2 dated 2017-04-11 and 2.0 dated 2018-05-06
jsonld-1.2/jsonld/inst/js/es6-promise.js |only jsonld-1.2/jsonld/inst/js/jsonld.js |only jsonld-2.0/jsonld/DESCRIPTION | 19 +++++++++++++------ jsonld-2.0/jsonld/MD5 | 14 +++++++------- jsonld-2.0/jsonld/NEWS | 9 +++++++++ jsonld-2.0/jsonld/R/download.R | 22 +++++++++++++--------- jsonld-2.0/jsonld/R/onload.R | 2 +- jsonld-2.0/jsonld/inst/WORDLIST |only jsonld-2.0/jsonld/inst/js/jsonld.min.js |only jsonld-2.0/jsonld/inst/js/wrappers.js | 15 +++++++++++---- 10 files changed, 54 insertions(+), 27 deletions(-)
Title: Unit-Level and Area-Level Small Area Estimation
Description: Implementation of some unit and area level EBLUP estimators as well as the estimators of their MSE also under heteroscedasticity. The package further documents the publications Breidenbach and Astrup (2012) <DOI:10.1007/s10342-012-0596-7>, Breidenbach et al. (2016) <DOI:10.1016/j.rse.2015.07.026> and Breidenbach et al. (2018 in press). The vignette further explains the use of the implemented functions.
Author: Johannes Breidenbach
Maintainer: Johannes Breidenbach <job@nibio.no>
Diff between JoSAE versions 0.2.3 dated 2015-08-09 and 0.3.0 dated 2018-05-06
JoSAE-0.2.3/JoSAE/vignettes/JoSAE-004.pdf |only JoSAE-0.2.3/JoSAE/vignettes/JoSAE-009.pdf |only JoSAE-0.3.0/JoSAE/DESCRIPTION | 13 - JoSAE-0.3.0/JoSAE/MD5 | 23 +- JoSAE-0.3.0/JoSAE/NAMESPACE | 5 JoSAE-0.3.0/JoSAE/R/sae.al.f.R |only JoSAE-0.3.0/JoSAE/R/sae.ul.f.R |only JoSAE-0.3.0/JoSAE/R/ul.data.prep.f.R |only JoSAE-0.3.0/JoSAE/R/ul.est.f.R |only JoSAE-0.3.0/JoSAE/R/ul.reml.f.R |only JoSAE-0.3.0/JoSAE/build/vignette.rds |binary JoSAE-0.3.0/JoSAE/data/ulal.sub.dom.dat.rda |only JoSAE-0.3.0/JoSAE/data/ulal.sub.samp.dat.rda |only JoSAE-0.3.0/JoSAE/inst/doc/JoSAE.pdf |binary JoSAE-0.3.0/JoSAE/man/JoSAE-package.Rd | 230 ++++++--------------------- JoSAE-0.3.0/JoSAE/man/sae.al.f.Rd |only JoSAE-0.3.0/JoSAE/man/sae.ul.f_all_UL.Rd |only JoSAE-0.3.0/JoSAE/man/ulal.sub.dom.dat.Rd |only JoSAE-0.3.0/JoSAE/man/ulal.sub.samp.dat.Rd |only 19 files changed, 79 insertions(+), 192 deletions(-)
Title: Interpreting High Resolution Mass Spectra
Description: Annotate and interpret deconvoluted mass spectra (mass*intensity pairs) from high resolution mass spectrometry devices.
Author: Jan Lisec [aut, cre]
Maintainer: Jan Lisec <jan.lisec@bam.de>
Diff between InterpretMSSpectrum versions 1.1 dated 2017-09-20 and 1.2 dated 2018-05-06
InterpretMSSpectrum-1.1/InterpretMSSpectrum/R/tmp.R |only InterpretMSSpectrum-1.2/InterpretMSSpectrum/DESCRIPTION | 12 ++-- InterpretMSSpectrum-1.2/InterpretMSSpectrum/MD5 | 28 +++++----- InterpretMSSpectrum-1.2/InterpretMSSpectrum/NAMESPACE | 2 InterpretMSSpectrum-1.2/InterpretMSSpectrum/R/CountChemicalElements.R | 2 InterpretMSSpectrum-1.2/InterpretMSSpectrum/R/DetermineIsomainPeaks.R | 4 - InterpretMSSpectrum-1.2/InterpretMSSpectrum/R/ExtractChemicalElements.R |only InterpretMSSpectrum-1.2/InterpretMSSpectrum/R/GetGroupFactor.R | 19 +++--- InterpretMSSpectrum-1.2/InterpretMSSpectrum/R/findiso.R | 10 --- InterpretMSSpectrum-1.2/InterpretMSSpectrum/R/is.subformula.R | 13 ---- InterpretMSSpectrum-1.2/InterpretMSSpectrum/data/neutral_losses.rda |only InterpretMSSpectrum-1.2/InterpretMSSpectrum/data/test_spectrum.rda |only InterpretMSSpectrum-1.2/InterpretMSSpectrum/man/CountChemicalElements.Rd | 1 InterpretMSSpectrum-1.2/InterpretMSSpectrum/man/DetermineIsomainPeaks.Rd | 4 - InterpretMSSpectrum-1.2/InterpretMSSpectrum/man/GetGroupFactor.Rd | 17 +++--- InterpretMSSpectrum-1.2/InterpretMSSpectrum/man/is.subformula.Rd | 13 ---- InterpretMSSpectrum-1.2/InterpretMSSpectrum/man/neutral_losses.Rd |only InterpretMSSpectrum-1.2/InterpretMSSpectrum/man/test_spectrum.Rd |only 18 files changed, 52 insertions(+), 73 deletions(-)
More information about InterpretMSSpectrum at CRAN
Permanent link
Title: HTTP and WebSocket Server Library
Description: Provides low-level socket and protocol support for handling
HTTP and WebSocket requests directly from within R. It is primarily
intended as a building block for other packages, rather than making it
particularly easy to create complete web applications using httpuv alone.
httpuv is built on top of the libuv and http-parser C libraries, both of
which were developed by Joyent, Inc. (See LICENSE file for libuv and
http-parser license information.)
Author: Joe Cheng, Hector Corrada Bravo [ctb], Jeroen Ooms [ctb],
Winston Chang [ctb]
Maintainer: Joe Cheng <joe@rstudio.com>
Diff between httpuv versions 1.4.1 dated 2018-04-21 and 1.4.2 dated 2018-05-06
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ NEWS.md | 7 +++++++ src/Makevars.win | 2 +- src/auto_deleter.h | 4 ++-- src/httprequest.cpp | 39 ++++++++++++++++++++++++++++++--------- src/httprequest.h | 7 +------ 7 files changed, 50 insertions(+), 27 deletions(-)
Title: Half-Normal Plots with Simulation Envelopes
Description: Generates (half-)normal plots with simulation envelopes using different diagnostics from a range of different fitted models. A few example datasets are included.
Author: Rafael de Andrade Moral [aut, cre],
John Hinde [aut],
Clarice Garcia Borges Demetrio [aut]
Maintainer: Rafael de Andrade Moral <rafael_moral@yahoo.com.br>
Diff between hnp versions 1.2-4 dated 2017-11-02 and 1.2-5 dated 2018-05-06
DESCRIPTION | 12 +++++++----- MD5 | 6 +++--- R/hnp-internal.R | 1 + man/hnp.Rd | 1 + 4 files changed, 12 insertions(+), 8 deletions(-)
Title: Geographically Weighted Logistic Elastic Net Regression
Description: Fit a geographically weighted logistic elastic net regression. Detailed explanations can be found in Yoneoka et al. (2016): New algorithm for constructing area-based index with geographical heterogeneities and variable selection: An application to gastric cancer screening <doi:10.1038/srep26582>.
Author: Daisuke Yoneoka, Eiko Saito
Maintainer: Daisuke Yoneoka <blue.sky.sea.dy@gmail.com>
Diff between GWLelast versions 1.1 dated 2015-04-29 and 1.2.1 dated 2018-05-06
GWLelast-1.1/GWLelast/R/GWLelast.cv.bw.R |only GWLelast-1.1/GWLelast/R/GWLelast.inner.parallel.R |only GWLelast-1.1/GWLelast/R/GWLelastic.R |only GWLelast-1.1/GWLelast/man/GWLelast.inner.parallel.Rd |only GWLelast-1.1/GWLelast/man/GWLelastic-package.Rd |only GWLelast-1.2.1/GWLelast/DESCRIPTION | 19 ++++---- GWLelast-1.2.1/GWLelast/LICENSE |only GWLelast-1.2.1/GWLelast/MD5 | 28 +++++------- GWLelast-1.2.1/GWLelast/NAMESPACE | 11 +++- GWLelast-1.2.1/GWLelast/R/GWLelast.R |only GWLelast-1.2.1/GWLelast/R/GWLelast.cw.bw.R |only GWLelast-1.2.1/GWLelast/R/GWLelast.est.R | 41 +++++++++--------- GWLelast-1.2.1/GWLelast/R/GWLelast.inner.R | 32 ++++++++------ GWLelast-1.2.1/GWLelast/R/GWLelast.sel.bw.R | 43 +++++++++++-------- GWLelast-1.2.1/GWLelast/man/GWLelast.Rd | 10 ++-- GWLelast-1.2.1/GWLelast/man/GWLelast.cv.bw.Rd | 19 +++----- GWLelast-1.2.1/GWLelast/man/GWLelast.est.Rd | 21 +++------ GWLelast-1.2.1/GWLelast/man/GWLelast.inner.Rd | 7 +-- GWLelast-1.2.1/GWLelast/man/GWLelast.sel.bw.Rd | 23 ++++------ 19 files changed, 135 insertions(+), 119 deletions(-)
Title: General Smoothing Splines
Description: A comprehensive package for structural multivariate
function estimation using smoothing splines.
Author: Chong Gu <chong@purdue.edu>
Maintainer: Chong Gu <chong@purdue.edu>
Diff between gss versions 2.1-8 dated 2018-04-19 and 2.1-9 dated 2018-05-06
gss-2.1-8/gss/R/ssden9.R |only gss-2.1-8/gss/src/dnewton9.f |only gss-2.1-8/gss/src/dnewton99.f |only gss-2.1-8/gss/src/ratfor/dnewton9.r |only gss-2.1-8/gss/src/ratfor/dnewton99.r |only gss-2.1-9/gss/ChangeLog | 13 gss-2.1-9/gss/DESCRIPTION | 8 gss-2.1-9/gss/MD5 | 27 - gss-2.1-9/gss/R/predict.ssllrm.R | 8 gss-2.1-9/gss/R/project.ssllrm.R | 16 gss-2.1-9/gss/R/ssllrm.R | 45 +- gss-2.1-9/gss/man/drkpk.Rd | 3 gss-2.1-9/gss/src/cdennewton.f | 36 + gss-2.1-9/gss/src/init.c | 12 gss-2.1-9/gss/src/llrmnewton.f | 671 +++++++++++++++++----------------- gss-2.1-9/gss/src/ratfor/cdennewton.r | 5 gss-2.1-9/gss/src/ratfor/llrmnewton.r | 70 ++- 17 files changed, 501 insertions(+), 413 deletions(-)
Title: Predicted Values and Discrete Changes for GLM
Description: Functions to calculate predicted values and the difference between
the two cases with confidence interval for glm(), glm.nb(), polr() and multinom().
Author: Benjamin Schlegel [aut,cre]
Maintainer: Benjamin Schlegel <kontakt@benjaminschlegel.ch>
Diff between glm.predict versions 3.0-0 dated 2017-12-06 and 3.0-1 dated 2018-05-06
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- R/getBaseCombinations.R | 2 +- 3 files changed, 7 insertions(+), 7 deletions(-)
Title: Miscellaneous Extensions to 'ggplot2'
Description: Extensions to 'ggplot2' respecting the grammar of graphics
paradigm. Provides new statistics to locate and tag peaks and valleys in 2D
plots, a statistics to add a label with the equation of a polynomial fitted
with lm(), or R^2 or adjusted R^2 or information criteria for any model
fitted with function lm(). Additional statistics give access to functions
in package 'broom'. Provides a function for flexibly converting time
series to data frames suitable for plotting with ggplot(). In addition
provides statistics and ggplot geometries useful for diagnosing what data
are passed to compute_group() and compute_panel() functions and to
geometries.
Author: Pedro J. Aphalo [aut, cre] (<https://orcid.org/0000-0003-3385-972X>),
Kamil Slowikowski [ctb]
Maintainer: Pedro J. Aphalo <pedro.aphalo@helsinki.fi>
Diff between ggpmisc versions 0.2.16 dated 2017-09-17 and 0.2.17 dated 2018-05-06
DESCRIPTION | 27 +- MD5 | 37 ++- NAMESPACE | 4 NEWS | 24 ++ R/ggpmisc.R | 4 R/layer-manip.R | 2 R/on-attach.R |only R/stat-fit-broom.R | 3 R/stat-quadrat-counts.R |only README.md | 43 ++-- build/vignette.rds |binary inst/doc/user-guide-1.R | 8 inst/doc/user-guide-1.Rmd | 265 ++++++++------------------- inst/doc/user-guide-1.html | 344 ++++++++++++------------------------ inst/doc/user-guide-2.html | 36 +-- inst/doc/user-guide-3.html | 426 ++++++++++++++++++++++----------------------- inst/doc/user-guide-4.html | 86 ++------- man/ggpmisc-ggproto.Rd | 4 man/ggpmisc-package.Rd | 2 man/stat_quadrat_counts.Rd |only vignettes/user-guide-1.Rmd | 265 ++++++++------------------- 21 files changed, 641 insertions(+), 939 deletions(-)
Title: Create Tidy Data Frames of Marginal Effects for 'ggplot' from
Model Outputs
Description: Compute marginal effects at the mean or average marginal effects from
statistical models and returns the result as tidy data frames. These
data frames are ready to use with the 'ggplot2'-package.
Marginal effects can be calculated for many different models. Interaction
terms, splines and polynomial terms are also supported. The two main
functions are ggpredict() and ggaverage(), however, there are
some convenient wrapper-functions especially for polynomials or
interactions. There is a generic plot()-method to plot the results
using 'ggplot2'.
Author: Daniel Lüdecke <d.luedecke@uke.de>
Maintainer: Daniel Lüdecke <d.luedecke@uke.de>
Diff between ggeffects versions 0.3.2 dated 2018-03-21 and 0.3.3 dated 2018-05-06
ggeffects-0.3.2/ggeffects/R/utils_model_family.R |only ggeffects-0.3.3/ggeffects/DESCRIPTION | 10 ggeffects-0.3.3/ggeffects/MD5 | 31 ggeffects-0.3.3/ggeffects/NAMESPACE | 2 ggeffects-0.3.3/ggeffects/NEWS.md | 16 ggeffects-0.3.3/ggeffects/R/emm.R | 11 ggeffects-0.3.3/ggeffects/R/ggalleffects.R | 556 ++-- ggeffects-0.3.3/ggeffects/R/ggeffect.R | 4 ggeffects-0.3.3/ggeffects/R/gginteraction.R | 4 ggeffects-0.3.3/ggeffects/R/ggpoly.R | 298 +- ggeffects-0.3.3/ggeffects/R/ggpredict.R | 30 ggeffects-0.3.3/ggeffects/R/predictions.R | 2037 ++++++++-------- ggeffects-0.3.3/ggeffects/R/utils.R | 231 - ggeffects-0.3.3/ggeffects/R/utils_expand_data_to_grid.R | 24 ggeffects-0.3.3/ggeffects/build/vignette.rds |binary ggeffects-0.3.3/ggeffects/inst/doc/marginaleffects.html | 666 +++-- ggeffects-0.3.3/ggeffects/man/ggpredict.Rd | 12 17 files changed, 2147 insertions(+), 1785 deletions(-)
Title: Reading Annual Financial Reports from Bovespa's DFP, FRE and FCA
System
Description: Reads annual financial reports including assets, liabilities, dividends history, stockholder composition and much more from Bovespa's DFP, FRE and FCA systems <http://www.bmfbovespa.com.br/en_us/products/listed-equities-and-derivatives/equities/listed-companies.htm>.
These are web based interfaces for all financial reports of companies traded at Bovespa. The package is specially designed for large scale data importation, keeping a tabular (long) structure for easier processing.
Author: Marcelo Perlin [aut, cre]
Maintainer: Marcelo Perlin <marceloperlin@gmail.com>
Diff between GetDFPData versions 0.6 dated 2018-02-16 and 0.7 dated 2018-05-06
DESCRIPTION | 8 MD5 | 39 +- NAMESPACE | 6 NEWS.md | 4 R/gdfpd_GetDFPData.R | 39 ++ R/gdfpd_fct_get_files_from_bovespa.R |only R/gdfpd_fix_dataframes.R | 3 R/gdfpd_get_info_companies.R | 13 R/gdfpd_read_dfp_zip_file.R | 47 ++- R/gdfpd_read_fre_zip_file.R | 49 ++- R/gdfpd_xml_fcts.R | 160 +++++++++-- build/vignette.rds |binary inst/doc/gdfpd-vignette-introduction.R | 98 ++---- inst/doc/gdfpd-vignette-introduction.Rmd | 73 ----- inst/doc/gdfpd-vignette-introduction.html | 427 ------------------------------ man/fix.fct.Rd | 4 man/gdfpd.GetDFPData.Rd | 5 man/gdfpd.get.files.from.bovespa.Rd |only man/get_files.Rd |only man/xml.fct.auditing.Rd |only man/xml.fct.family.related.parts.Rd |only man/xml.fct.family.relations.Rd |only man/xml.fct.responsible.Rd |only vignettes/gdfpd-vignette-introduction.Rmd | 73 ----- 24 files changed, 361 insertions(+), 687 deletions(-)
Title: A Future API for Parallel Processing using 'callr'
Description: Implementation of the Future API on top of the 'callr' package. This allows you to process futures, as defined by the 'future' package, in parallel out of the box, on your local (Linux, macOS, Windows, ...) machine. Contrary to backends relying on the 'parallel' package (e.g. 'future::multisession'), the 'callr' backend provided here can run more than 125 parallel R processes.
Author: Henrik Bengtsson [aut, cre, cph]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between future.callr versions 0.2.0 dated 2018-02-13 and 0.3.0 dated 2018-05-06
DESCRIPTION | 8 - MD5 | 32 ++--- NAMESPACE | 7 - NEWS | 24 ++++ R/CallrFuture-class.R | 236 +++++++++++++++++++++--------------------- R/callr.R | 2 R/utils.R | 24 ++++ R/waitForWorker.R | 10 - build/vignette.rds |binary inst/doc/future.callr.html | 2 inst/doc/future.callr.md.rsp | 2 man/status.CallrFuture.Rd | 2 tests/CallrFuture.R | 9 + tests/dotdotdot.R | 2 tests/incl/start,load-only.R | 1 tests/zzz,future_lapply.R | 2 vignettes/future.callr.md.rsp | 2 17 files changed, 210 insertions(+), 155 deletions(-)
Title: A Future API for Parallel and Distributed Processing using
'batchtools'
Description: Implementation of the Future API on top of the 'batchtools' package.
This allows you to process futures, as defined by the 'future' package,
in parallel out of the box, not only on your local machine or ad-hoc
cluster of machines, but also via high-performance compute ('HPC') job
schedulers such as 'LSF', 'OpenLava', 'Slurm', 'SGE', and 'TORQUE' / 'PBS',
e.g. 'y <- future_lapply(files, FUN = process)'.
Author: Henrik Bengtsson [aut, cre, cph]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between future.batchtools versions 0.6.0 dated 2017-09-11 and 0.7.0 dated 2018-05-06
future.batchtools-0.6.0/future.batchtools/tests/future_lapply.R |only future.batchtools-0.7.0/future.batchtools/DESCRIPTION | 12 - future.batchtools-0.7.0/future.batchtools/MD5 | 60 ++--- future.batchtools-0.7.0/future.batchtools/NAMESPACE | 1 future.batchtools-0.7.0/future.batchtools/NEWS | 19 + future.batchtools-0.7.0/future.batchtools/R/BatchtoolsFuture-class.R | 117 ++++++---- future.batchtools-0.7.0/future.batchtools/R/BatchtoolsFutureError.R | 2 future.batchtools-0.7.0/future.batchtools/R/batchtools_custom.R | 11 future.batchtools-0.7.0/future.batchtools/R/batchtools_local.R | 14 - future.batchtools-0.7.0/future.batchtools/R/batchtools_multicore.R | 14 - future.batchtools-0.7.0/future.batchtools/R/batchtools_template.R | 34 +- future.batchtools-0.7.0/future.batchtools/R/future.batchtools-package.R | 2 future.batchtools-0.7.0/future.batchtools/R/nbrOfWorkers.R | 12 - future.batchtools-0.7.0/future.batchtools/R/resources_OP.R | 9 future.batchtools-0.7.0/future.batchtools/R/temp_registry.R | 6 future.batchtools-0.7.0/future.batchtools/R/utils.R | 22 + future.batchtools-0.7.0/future.batchtools/build/vignette.rds |binary future.batchtools-0.7.0/future.batchtools/inst/doc/future.batchtools.html | 2 future.batchtools-0.7.0/future.batchtools/inst/doc/future.batchtools.md.rsp | 2 future.batchtools-0.7.0/future.batchtools/man/BatchtoolsFuture.Rd | 13 - future.batchtools-0.7.0/future.batchtools/man/BatchtoolsFutureError.Rd | 2 future.batchtools-0.7.0/future.batchtools/man/batchtools_custom.Rd | 12 - future.batchtools-0.7.0/future.batchtools/man/batchtools_local.Rd | 15 - future.batchtools-0.7.0/future.batchtools/man/batchtools_multicore.Rd | 10 future.batchtools-0.7.0/future.batchtools/man/batchtools_template.Rd | 34 +- future.batchtools-0.7.0/future.batchtools/man/future.batchtools.Rd | 2 future.batchtools-0.7.0/future.batchtools/man/grapes-resources-grapes.Rd | 2 future.batchtools-0.7.0/future.batchtools/man/nbrOfWorkers.batchtools.Rd | 4 future.batchtools-0.7.0/future.batchtools/tests/BatchtoolsFuture.R | 2 future.batchtools-0.7.0/future.batchtools/tests/BatchtoolsFutureError.R | 9 future.batchtools-0.7.0/future.batchtools/tests/zzz,future_lapply.R |only future.batchtools-0.7.0/future.batchtools/vignettes/future.batchtools.md.rsp | 2 32 files changed, 261 insertions(+), 185 deletions(-)
More information about future.batchtools at CRAN
Permanent link
Title: Convenient Functions for Ensemble Time Series Forecasts
Description: Convenient functions for ensemble forecasts in R combining
approaches from the 'forecast' package. Forecasts generated from auto.arima(), ets(),
thetam(), nnetar(), stlm(), and tbats() can be combined with equal weights, weights
based on in-sample errors, or CV weights. Cross validation for time series data
and user-supplied models and forecasting functions is also supported to evaluate model accuracy.
Author: David Shaub [aut, cre],
Peter Ellis [aut]
Maintainer: David Shaub <davidshaub@gmx.com>
Diff between forecastHybrid versions 2.1.11 dated 2018-03-27 and 2.2.12 dated 2018-05-06
DESCRIPTION | 10 MD5 | 18 R/forecast.hybridModel.R | 22 R/hybridModel.R | 44 - build/vignette.rds |binary inst/NEWS.md | 6 inst/doc/forecastHybrid.html | 1012 +++++++++++++---------------- man/forecast.hybridModel.Rd | 7 tests/testthat/test-forecast.hybridModel.R | 20 tests/testthat/test-hybridModel.R | 12 10 files changed, 584 insertions(+), 567 deletions(-)
More information about forecastHybrid at CRAN
Permanent link
Title: An R Client for the "Fixer.io" Currency API
Description: An R client for the "fixer.io" currency conversion and exchange
rate API. The API requires registration and some features are only available
on paid accounts. The full documentation is available at
<https://fixer.io/documentation>.
Author: Evan Odell [aut, cre] (<https://orcid.org/0000-0003-1845-808X>)
Maintainer: Evan Odell <evanodell91@gmail.com>
Diff between fixerapi versions 0.1.1 dated 2018-04-06 and 0.1.5 dated 2018-05-06
fixerapi-0.1.1/fixerapi/R/utils-base-currency.R |only fixerapi-0.1.5/fixerapi/DESCRIPTION | 6 fixerapi-0.1.5/fixerapi/LICENSE | 4 fixerapi-0.1.5/fixerapi/MD5 | 76 - fixerapi-0.1.5/fixerapi/NAMESPACE | 28 fixerapi-0.1.5/fixerapi/NEWS.md | 23 fixerapi-0.1.5/fixerapi/R/account_type.R | 28 fixerapi-0.1.5/fixerapi/R/api_key.R | 80 - fixerapi-0.1.5/fixerapi/R/convert.R | 9 fixerapi-0.1.5/fixerapi/R/fixerapi-package.R | 2 fixerapi-0.1.5/fixerapi/R/flux.R | 3 fixerapi-0.1.5/fixerapi/R/historical.R | 19 fixerapi-0.1.5/fixerapi/R/latest.R | 16 fixerapi-0.1.5/fixerapi/R/symbols.R | 42 fixerapi-0.1.5/fixerapi/R/timeseries.R | 9 fixerapi-0.1.5/fixerapi/R/utils-baseurl.R | 12 fixerapi-0.1.5/fixerapi/R/utils-date-check.R | 30 fixerapi-0.1.5/fixerapi/R/utils-success_check.R | 26 fixerapi-0.1.5/fixerapi/R/utils-symbols.R | 20 fixerapi-0.1.5/fixerapi/README.md | 203 ++-- fixerapi-0.1.5/fixerapi/build/vignette.rds |binary fixerapi-0.1.5/fixerapi/inst/doc/introduction.R | 84 - fixerapi-0.1.5/fixerapi/inst/doc/introduction.Rmd | 178 +-- fixerapi-0.1.5/fixerapi/inst/doc/introduction.html | 726 +++++++-------- fixerapi-0.1.5/fixerapi/man/fixer_account_type.Rd | 56 - fixerapi-0.1.5/fixerapi/man/fixer_api_key.Rd | 42 fixerapi-0.1.5/fixerapi/man/fixer_convert.Rd | 69 - fixerapi-0.1.5/fixerapi/man/fixer_fluctuation.Rd | 91 - fixerapi-0.1.5/fixerapi/man/fixer_historical.Rd | 72 - fixerapi-0.1.5/fixerapi/man/fixer_latest.Rd | 72 - fixerapi-0.1.5/fixerapi/man/fixer_symbols.Rd | 24 fixerapi-0.1.5/fixerapi/man/fixer_time_series.Rd | 87 - fixerapi-0.1.5/fixerapi/man/fixerapi.Rd | 30 fixerapi-0.1.5/fixerapi/tests/testthat.R | 8 fixerapi-0.1.5/fixerapi/tests/testthat/test-conversion.R |only fixerapi-0.1.5/fixerapi/tests/testthat/test-errors.R | 7 fixerapi-0.1.5/fixerapi/tests/testthat/test-flux.R |only fixerapi-0.1.5/fixerapi/tests/testthat/test-latest.R | 26 fixerapi-0.1.5/fixerapi/tests/testthat/test-symbols.R | 24 fixerapi-0.1.5/fixerapi/tests/testthat/test-timeseries.R |only fixerapi-0.1.5/fixerapi/vignettes/introduction.Rmd | 178 +-- 41 files changed, 1254 insertions(+), 1156 deletions(-)
Title: Easy Management of File Names
Description: Create descriptive file names with ease. New file names are
automatically (but optionally) time stamped and placed in date stamped
directories. Streamline your analysis pipeline with input and output file
names that have informative tags and proper file extensions.
Author: David J. H. Shih
Maintainer: David J. H. Shih <djh.shih@gmail.com>
Diff between filenamer versions 0.2.2 dated 2018-01-16 and 0.2.3 dated 2018-05-06
DESCRIPTION | 8 ++++---- MD5 | 32 ++++++++++++++++---------------- NAMESPACE | 2 +- R/filename.R | 3 ++- R/make_path.R | 8 +++++++- man/as.character.filename.Rd | 4 ++-- man/as.filename.Rd | 6 +++--- man/filename.Rd | 15 +++++++-------- man/insert.Rd | 8 ++++---- man/is.filename.Rd | 3 ++- man/make_path.Rd | 16 +++++++++++----- man/set_fdate.Rd | 4 ++-- man/set_fext.Rd | 4 ++-- man/set_fpath.Rd | 4 ++-- man/set_ftime.Rd | 6 +++--- man/tag.Rd | 4 ++-- man/trim_ext.Rd | 4 ++-- 17 files changed, 72 insertions(+), 59 deletions(-)
Title: Multivariate Exploratory Data Analysis and Data Mining
Description: Exploratory data analysis methods to summarize, visualize and describe datasets. The main principal component methods are available, those with the largest potential in terms of applications: principal component analysis (PCA) when variables are quantitative, correspondence analysis (CA) and multiple correspondence analysis (MCA) when variables are categorical, Multiple Factor Analysis when variables are structured in groups, etc. and hierarchical cluster analysis. F. Husson, S. Le and J. Pages (2017) <DOI:10.1201/b10345-2>.
Author: Francois Husson, Julie Josse, Sebastien Le, Jeremy Mazet
Maintainer: Francois Husson <francois.husson@agrocampus-ouest.fr>
Diff between FactoMineR versions 1.40 dated 2018-03-28 and 1.41 dated 2018-05-06
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NAMESPACE | 2 +- R/HCPC.R | 33 +++++++++++++++++++++++---------- R/plot.HCPC.R | 5 +++-- R/print.catdes.R | 2 +- 6 files changed, 37 insertions(+), 23 deletions(-)
Title: Automatic Description of Factorial Analysis
Description: Brings a set of tools to help and automatically realise the description of principal component analyses (from 'FactoMineR' functions). Detection of existing outliers, identification of the informative components, graphical views and dimensions description are performed threw dedicated functions. The Investigate() function performs all these functions in one, and returns the result as a report document (Word, PDF or HTML).
Author: Simon Thuleau, Francois Husson
Maintainer: Simon Thuleau <factoinvestigate@gmail.com>
Diff between FactoInvestigate versions 1.1 dated 2017-10-04 and 1.3 dated 2018-05-06
DESCRIPTION | 12 ++++++------ MD5 | 14 +++++++------- R/Investigate.R | 1 - R/description.R | 4 +--- R/outliers.R | 19 +++++++++++++------ build/partial.rdb |binary inst/po/fr/LC_MESSAGES/R-FactoInvestigate.mo |binary po/R-fr.po | 4 ++-- 8 files changed, 29 insertions(+), 25 deletions(-)
More information about FactoInvestigate at CRAN
Permanent link
Title: Expokit in R
Description: An R-interface to the Fortran package Expokit.
Author: Roger B. Sidje [aut, cph],
Niels Richard Hansen [aut, cre, cph]
Maintainer: Niels Richard Hansen <Niels.R.Hansen@math.ku.dk>
Diff between expoRkit versions 0.9.1 dated 2018-04-21 and 0.9.2 dated 2018-05-06
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- src/expokit.f | 2 +- 3 files changed, 7 insertions(+), 7 deletions(-)
Title: Effect Size Computation for Meta Analysis
Description: Implementation of the web-based 'Practical Meta-Analysis Effect Size
Calculator' from David B. Wilson (<http://www.campbellcollaboration.org/escalc/html/EffectSizeCalculator-Home.php>)
in R. Based on the input, the effect size can be returned as standardized mean
difference, Cohen's f, Hedges' g, Pearson's r or Fisher's
transformation z, odds ratio or log odds, or eta squared effect size.
Author: Daniel Lüdecke <d.luedecke@uke.de>
Maintainer: Daniel Lüdecke <d.luedecke@uke.de>
Diff between esc versions 0.4.0 dated 2017-11-13 and 0.4.1 dated 2018-05-06
DESCRIPTION | 8 +-- MD5 | 8 +-- NEWS.md | 84 ++++++++++++++++++++------------------- R/esc_d2f.R | 116 +++++++++++++++++++++++++++--------------------------- build/partial.rdb |binary 5 files changed, 111 insertions(+), 105 deletions(-)
Title: Tools for the Analysis of Epidemiological Data
Description: Tools for the analysis of epidemiological data. Contains functions for directly and indirectly adjusting measures of disease frequency, quantifying measures of association on the basis of single or multiple strata of count data presented in a contingency table, and computing confidence intervals around incidence risk and incidence rate estimates. Miscellaneous functions for use in meta-analysis, diagnostic test interpretation, and sample size calculations.
Author: Mark Stevenson <mark.stevenson1@unimelb.edu.au> with contributions from Telmo Nunes, Cord Heuer, Jonathon Marshall, Javier Sanchez, Ron Thornton, Jeno Reiczigel, Jim Robison-Cox, Paola Sebastiani, Peter Solymos, Kazuki Yoshida, Geoff Jones, Sarah Pirikahu, Simon Firestone, Ryan Kyle, Johann Popp and Mathew Jay.
Maintainer: Mark Stevenson <mark.stevenson1@unimelb.edu.au>
Diff between epiR versions 0.9-93 dated 2017-12-11 and 0.9-96 dated 2018-05-06
DESCRIPTION | 8 +-- MD5 | 17 ++++---- NEWS |only R/epi.ccc.R | 2 R/epi.interaction.r | 104 ++++++++++++++++++++++++++----------------------- R/epi.noninfb.R | 4 + man/epi.ccc.Rd | 81 ++++++++++++++++++++++++++++++++++++-- man/epi.directadj.Rd | 42 +++++++++++-------- man/epi.insthaz.Rd | 36 +++++++++++++++- man/epi.interaction.Rd | 4 - 10 files changed, 210 insertions(+), 88 deletions(-)
Title: Methods to Enrich R Objects with Extra Components
Description: Provides the "enrich" method to enrich list-like R objects with new, relevant components. The current version has methods for enriching objects of class 'family', 'link-glm', 'lm', 'glm' and 'betareg'. The resulting objects preserve their class, so all methods associated with them still apply. The package also provides the 'enriched_glm' function that has the same interface as 'glm' but results in objects of class 'enriched_glm'. In addition to the usual components in a `glm` object, 'enriched_glm' objects carry an object-specific simulate method and functions to compute the scores, the observed and expected information matrix, the first-order bias, as well as model densities, probabilities, and quantiles at arbitrary parameter values. The package can also be used to produce customizable source code templates for the structured implementation of methods to compute new components and enrich arbitrary objects.
Author: Ioannis Kosmidis [aut, cre]
Maintainer: Ioannis Kosmidis <i.kosmidis@ucl.ac.uk>
Diff between enrichwith versions 0.1 dated 2017-11-06 and 0.1.1 dated 2018-05-06
DESCRIPTION | 6 MD5 | 16 - build/vignette.rds |binary inst/doc/GLMs.html | 472 ++++++++++++++++++++++++++++----------- inst/doc/bias.R | 3 inst/doc/bias.Rmd | 3 inst/doc/bias.html | 401 +++++++++++++++++++++++++-------- inst/doc/exponential_family.html | 352 +++++++++++++++++++++++------ vignettes/bias.Rmd | 3 9 files changed, 940 insertions(+), 316 deletions(-)
Title: An Framework for Reducing Elemental LAICPMS Data from Solid
Structures
Description: Aims to facilitate the reduction of elemental microchemistry data from solid-phase LAICPMS analysis (laser ablation inductive coupled plasma mass spectrometry). The 'elementR' package provides a reactive and user friendly interface (based on a 'shiny' application) and a set of 'R6' classes for conducting all steps needed for an optimal data reduction while leaving maximum control for user.
Author: Charlotte Sirot, Francois Guilhaumon
Maintainer: Charlotte Sirot <charlott.sirot@gmail.com>
Diff between elementR versions 1.3.5 dated 2018-02-12 and 1.3.6 dated 2018-05-06
DESCRIPTION | 11 ++++++----- MD5 | 4 ++-- NAMESPACE | 2 +- 3 files changed, 9 insertions(+), 8 deletions(-)
Title: Procedures for Ecological Assessment of Surface Waters
Description: Functions for evaluating and visualizing
ecological assessment procedures for surface waters
containing physical, chemical and biological assessments
in the form of value functions.
Author: Nele Schuwirth <nele.schuwirth@eawag.ch> and Peter Reichert <peter.reichert@eawag.ch>
with contributions by Simone Langhans
Maintainer: Nele Schuwirth <nele.schuwirth@eawag.ch>
Diff between ecoval versions 1.1 dated 2017-01-20 and 1.2 dated 2018-05-06
ecoval-1.1/ecoval/data/ecoval.dictionaries.default.RData |only ecoval-1.2/ecoval/DESCRIPTION | 12 ecoval-1.2/ecoval/MD5 | 85 +- ecoval-1.2/ecoval/NAMESPACE | 31 ecoval-1.2/ecoval/R/lake.morphol.2016.r | 24 ecoval-1.2/ecoval/R/msk.macrophytes.2017.calc.types.r |only ecoval-1.2/ecoval/R/msk.macrophytes.2017.doc.R |only ecoval-1.2/ecoval/R/msk.macrophytes.2017.plaus.crit.R |only ecoval-1.2/ecoval/R/msk.macrophytes.2017.prepare.data.R |only ecoval-1.2/ecoval/R/msk.macrophytes.2017.r |only ecoval-1.2/ecoval/R/msk.macrophytes.2017.read.compile.evaluate.R |only ecoval-1.2/ecoval/R/msk.morphol.1998.r | 409 ++-------- ecoval-1.2/ecoval/R/msk.nutrients.2010.r | 36 ecoval-1.2/ecoval/R/msk.physapp.2007.r | 2 ecoval-1.2/ecoval/data/ecoval_data.RData |only ecoval-1.2/ecoval/inst |only ecoval-1.2/ecoval/man/ecoval-package.Rd | 9 ecoval-1.2/ecoval/man/figures/lakemorphol2016.pdf |binary ecoval-1.2/ecoval/man/figures/lakemorphol2016.png |binary ecoval-1.2/ecoval/man/figures/lakemorphol2016French.pdf |binary ecoval-1.2/ecoval/man/figures/lakemorphol2016French.png |binary ecoval-1.2/ecoval/man/figures/lakemorphol2016German.pdf |binary ecoval-1.2/ecoval/man/figures/lakemorphol2016German.png |binary ecoval-1.2/ecoval/man/lake.morphol.2016.aggregate.val.spatial.Rd | 4 ecoval-1.2/ecoval/man/lake.morphol.2016.create.Rd | 4 ecoval-1.2/ecoval/man/lake.morphol.2016.plot.val.spatial.Rd | 4 ecoval-1.2/ecoval/man/lake.morphol.2016.read.attrib.Rd | 4 ecoval-1.2/ecoval/man/msk.diatoms.2007.create.Rd | 2 ecoval-1.2/ecoval/man/msk.fish.2004.create.Rd | 2 ecoval-1.2/ecoval/man/msk.hydrol.2011.aggregate.Rd | 2 ecoval-1.2/ecoval/man/msk.hydrol.2011.create.Rd | 2 ecoval-1.2/ecoval/man/msk.invertebrates.2010.create.Rd | 2 ecoval-1.2/ecoval/man/msk.macrophytes.2017.addminbonusmalus.Rd |only ecoval-1.2/ecoval/man/msk.macrophytes.2017.calc.types.Rd |only ecoval-1.2/ecoval/man/msk.macrophytes.2017.create.Rd |only ecoval-1.2/ecoval/man/msk.macrophytes.2017.doc.site.Rd |only ecoval-1.2/ecoval/man/msk.macrophytes.2017.doc.typology.Rd |only ecoval-1.2/ecoval/man/msk.macrophytes.2017.doc.valuation.Rd |only ecoval-1.2/ecoval/man/msk.macrophytes.2017.doc.vegetation.Rd |only ecoval-1.2/ecoval/man/msk.macrophytes.2017.plot.hierarchy.Rd |only ecoval-1.2/ecoval/man/msk.macrophytes.2017.plot.typedef.Rd |only ecoval-1.2/ecoval/man/msk.macrophytes.2017.plot.types.grfo.Rd |only ecoval-1.2/ecoval/man/msk.macrophytes.2017.plot.types.scheme.Rd |only ecoval-1.2/ecoval/man/msk.macrophytes.2017.read.compile.evaluate.Rd |only ecoval-1.2/ecoval/man/msk.macrophytes.2017_ListTaxa.Rd |only ecoval-1.2/ecoval/man/msk.macrophytes.2017_RiverTypes_DefLimitsUnc.Rd |only ecoval-1.2/ecoval/man/msk.macrophytes.2017_RiverTypes_DefObsUnc.Rd |only ecoval-1.2/ecoval/man/msk.macrophytes.2017_RiverTypes_DefStruct.Rd |only ecoval-1.2/ecoval/man/msk.morphol.1998.aggregate.Rd | 2 ecoval-1.2/ecoval/man/msk.morphol.1998.create.Rd | 2 ecoval-1.2/ecoval/man/msk.nutrients.2010.create.Rd | 2 ecoval-1.2/ecoval/man/msk.physapp.2007.create.Rd | 2 ecoval-1.2/ecoval/man/val.invertebrates.create.Rd | 2 53 files changed, 243 insertions(+), 401 deletions(-)
Title: Search and Retrieve Scientific Publication Records from PubMed
Description: Query NCBI Entrez and retrieve PubMed records in XML or text format. Process PubMed records by extracting and aggregating data from selected fields. A large number of records can be easily downloaded via this simple-to-use interface to the NCBI PubMed API.
Author: Damiano Fantini
Maintainer: Damiano Fantini <damiano.fantini@gmail.com>
Diff between easyPubMed versions 2.3 dated 2017-02-27 and 2.5 dated 2018-05-06
easyPubMed-2.3/easyPubMed/R/article_to_df.R |only easyPubMed-2.3/easyPubMed/R/articles_to_list.R |only easyPubMed-2.3/easyPubMed/R/batch_pubmed_download.R |only easyPubMed-2.3/easyPubMed/R/custom_grep.R |only easyPubMed-2.3/easyPubMed/R/easyPubMed-internal.R |only easyPubMed-2.3/easyPubMed/R/fetch_pubmed_data.R |only easyPubMed-2.3/easyPubMed/R/get_pubmed_ids.R |only easyPubMed-2.3/easyPubMed/R/table_articles_byAuth.R |only easyPubMed-2.3/easyPubMed/R/trim_address.R |only easyPubMed-2.3/easyPubMed/vignettes/easyPM_vignette_pdf.html |only easyPubMed-2.5/easyPubMed/DESCRIPTION | 8 easyPubMed-2.5/easyPubMed/MD5 | 29 easyPubMed-2.5/easyPubMed/R/all_EPM_2_5.R |only easyPubMed-2.5/easyPubMed/build/vignette.rds |binary easyPubMed-2.5/easyPubMed/inst/doc/easyPM_vignette_html.Rmd | 2 easyPubMed-2.5/easyPubMed/inst/doc/easyPM_vignette_html.html | 599 ++++------- easyPubMed-2.5/easyPubMed/inst/doc/easyPM_vignette_pdf.Rmd | 2 easyPubMed-2.5/easyPubMed/inst/doc/easyPM_vignette_pdf.pdf |binary easyPubMed-2.5/easyPubMed/man/article_to_df.Rd | 6 easyPubMed-2.5/easyPubMed/vignettes/easyPM_vignette_html.Rmd | 2 easyPubMed-2.5/easyPubMed/vignettes/easyPM_vignette_pdf.Rmd | 2 21 files changed, 258 insertions(+), 392 deletions(-)
Title: DIF and DDF Detection by Non-Linear Regression Models
Description: Detection of differential item functioning (DIF) among dichotomously scored items and differential distractor functioning (DDF) among unscored items with non-linear regression procedures based on generalized logistic regression models (Drabinova and Martinkova, 2017, <doi:10.1111/jedm.12158>).
Author: Adela Drabinova [aut, cre],
Patricia Martinkova [aut],
Karel Zvara [aut]
Maintainer: Adela Drabinova <drabinova@cs.cas.cz>
Diff between difNLR versions 1.2.1 dated 2018-03-05 and 1.2.2 dated 2018-05-06
DESCRIPTION | 8 +-- MD5 | 70 ++++++++++++++++----------------- NEWS | 33 ++++++++++++++++ R/GMAT.R | 2 R/GMAT2.R | 7 ++- R/GMAT2key.R | 3 - R/GMAT2test.R | 3 - R/GMATkey.R | 2 R/GMATtest.R | 2 R/MSATB.R | 3 - R/MSATBkey.R | 3 - R/MSATBtest.R | 3 - R/NLR.R | 13 ++++-- R/ddfMLR.R | 103 ++++++++++++++++++++++++++++++++++++++++---------- R/difNLR-package.R | 11 ++--- R/difNLR.R | 38 +++++++++--------- R/formulaNLR.R | 6 +- R/genNLR.R | 5 +- R/startNLR.R | 3 - README.md | 4 - inst/CITATION | 4 - man/GMAT.Rd | 2 man/GMAT2.Rd | 7 ++- man/GMAT2key.Rd | 3 - man/GMAT2test.Rd | 3 - man/GMATkey.Rd | 2 man/GMATtest.Rd | 2 man/MSATB.Rd | 3 - man/MSATBkey.Rd | 3 - man/MSATBtest.Rd | 3 - man/NLR.Rd | 3 - man/ddfMLR.Rd | 6 +- man/difNLR-package.Rd | 11 ++--- man/difNLR.Rd | 12 +++-- man/genNLR.Rd | 3 - man/startNLR.Rd | 3 - 36 files changed, 263 insertions(+), 129 deletions(-)
Title: Diverse Cluster Ensemble in R
Description: Performs cluster analysis using an ensemble clustering framework.
Results from a diverse set of algorithms are pooled together using methods
such as majority voting, K-Modes, LinkCluE, and CSPA. There are options to
compare cluster assignments across algorithms using internal and external
indices, visualizations such as heatmaps, and significance testing for the
existence of clusters.
Author: Derek Chiu [aut, cre],
Aline Talhouk [aut],
Johnson Liu [ctb, com]
Maintainer: Derek Chiu <dchiu@bccrc.ca>
Diff between diceR versions 0.4.0 dated 2018-02-22 and 0.5.0 dated 2018-05-06
DESCRIPTION | 12 - MD5 | 26 +- NEWS.md | 6 R/algorithms.R | 43 +--- R/consensus_cluster.R | 36 +-- R/dice.R | 8 R/graphs.R | 22 -- build/vignette.rds |binary inst/doc/overview.R | 10 inst/doc/overview.Rmd | 17 + inst/doc/overview.html | 472 ++++++++++++++++++++++++++++++++++------------- man/consensus_cluster.Rd | 38 +-- man/dice.Rd | 19 - vignettes/overview.Rmd | 17 + 14 files changed, 472 insertions(+), 254 deletions(-)
Title: Extending 'dendrogram' Functionality in R
Description: Offers a set of functions for extending
'dendrogram' objects in R, letting you visualize and compare trees of
'hierarchical clusterings'. You can (1) Adjust a tree's graphical parameters
- the color, size, type, etc of its branches, nodes and labels. (2)
Visually and statistically compare different 'dendrograms' to one another.
Author: Tal Galili [aut, cre, cph] (https://www.r-statistics.com),
Gavin Simpson [ctb],
Gregory Jefferis [aut, ctb] (imported code from his dendroextras
package),
Marco Gallotta [ctb] (a.k.a: marcog),
Johan Renaudie [ctb] (https://github.com/plannapus),
The R Core Team [ctb] (Thanks for the Infastructure, and code in the
examples),
Kurt Hornik [ctb],
Uwe Ligges [ctb],
Andrej-Nikolai Spiess [ctb],
Steve Horvath [ctb],
Peter Langfelder [ctb],
skullkey [ctb],
Mark Van Der Loo [ctb] (https://github.com/markvanderloo d3dendrogram),
Andrie de Vries [ctb] (ggdendro author),
Zuguang Gu [ctb] (circlize author),
Cath [ctb] (https://github.com/CathG),
John Ma [ctb] (https://github.com/JohnMCMa),
Krzysiek G [ctb] (https://github.com/storaged),
Manuela Hummel [ctb] (https://github.com/hummelma),
Chase Clark [ctb] (https://github.com/chasemc),
Yoav Benjamini [ths]
Maintainer: Tal Galili <tal.galili@gmail.com>
Diff between dendextend versions 1.7.0 dated 2018-02-11 and 1.8.0 dated 2018-05-06
ChangeLog | 81 +++++++++++++++++++++++++++++++++ DESCRIPTION | 18 +++++-- MD5 | 29 ++++++----- NAMESPACE | 2 NEWS | 10 ++++ NEWS.md | 12 ++++ R/branches_attr_by.R | 75 ++++++++++++++++++++++++++++++ R/colored_dots.R |only R/set.dendrogram.R | 24 ++++++++- inst/doc/Cluster_Analysis.html | 4 - inst/doc/FAQ.html | 4 - inst/doc/Quick_Introduction.html | 4 - inst/doc/introduction.html | 12 ++-- man/branches_attr_by_lists.Rd |only man/colored_dots.Rd |only man/set.Rd | 21 ++++++-- tests/testthat/test-branches_attr_by.R | 32 +++++++++++++ 17 files changed, 290 insertions(+), 38 deletions(-)
Title: Visualizations of High-Dimensional Data
Description: A collection of various visualizations methods is provided. With regards to high-dimensional data the heat map and silhouette plot for grouped data,visualizations of the distribution of distances, the scatter-density plot for two variables,the Shepard density plot as well as the Bland-Altman plot are presented here. For a classification of countries, a map of the world or Germany can be visualized. 'DataVisualizations' makes it possible to inspect the distribution of each feature of a dataset visually through the combination of four methods.More detailed explanations can be found in the book of Thrun, M.C.:"Projection-Based Clustering through Self-Organization and Swarm Intelligence" (2018) <DOI:10.1007/978-3-658-20540-9>. Furthermore, for categorical features the ABC analysis improved Pie charts, slope charts and fan plots are usable. Additionally, for measurements across a geographic area an easy to use function for a Choropleth map is presented here.
Author: Michael Thrun [aut, cre, cph],
Peter Kampstra [aut],
Felix Pape [aut, rev],
Onno Hansen-Goos [ctr, ctb],
Fredericke Matz [ctr, ctb],
Alfred Ultsch [dtc, ctb]
Maintainer: Michael Thrun <m.thrun@gmx.net>
Diff between DataVisualizations versions 0.9.2 dated 2018-01-30 and 1.0.0 dated 2018-05-06
DESCRIPTION | 19 +++--- MD5 | 66 ++++++++++++++++------- NAMESPACE | 33 ++++++++--- R/BoxplotData.R |only R/GoogleMapsCoordinates.R | 14 ++++ R/Heatmap.R | 15 +++-- R/InspectDistances.R | 4 - R/InspectScatterOfData.R |only R/InspectVariable.R | 8 ++ R/MAplot.R |only R/PDEplot.R |only R/PDEscatter.R | 77 +++++++++++++++++---------- R/PixelMatrixPlot.R | 33 +++++++---- R/ShepardDensityPlot.R | 6 +- R/ShepardScatterPlot.R | 2 R/SilhouettePlot.R | 2 R/checkCls.R |only R/checkFeature.R |only R/fanPlot.R |only R/internpiechart.R |only R/nanPlot.R | 7 ++ R/pieChart.R |only R/plot3D.R |only R/plotChoroplethMap.R |only R/plotWorldmap.R |only R/slopeChart.R |only R/zplot.R | 12 +++- data/ChoroplethPostalCodesAndAGS_Germany.rda |only data/categoricalVariable.rda |only data/world_country_polygons.rda |only man/BoxplotData.Rd |only man/ChoroplethPostalCodesAndAGS_Germany.Rd |only man/DataVisualizations-package.Rd |only man/InspectDistances.Rd | 6 +- man/InspectScatterOfData.Rd |only man/MAplot.Rd |only man/PDEplot.Rd |only man/PDEscatter.Rd | 20 +++---- man/PixelMatrixPlot.Rd | 9 ++- man/ShepardDensityPlot.Rd | 4 - man/categoricalVariable.Rd |only man/fanPlot.Rd |only man/pieChart.Rd |only man/plot3D.Rd |only man/plotChoroplethMap.Rd |only man/plotWorldmap.Rd |only man/slopeChart.Rd |only man/world_country_polygons.Rd |only man/zplot.Rd | 2 49 files changed, 235 insertions(+), 104 deletions(-)
More information about DataVisualizations at CRAN
Permanent link
Title: A Suite of Checks for Identification of Potential Errors in a
Data Frame as Part of the Data Screening Process
Description: Data screening is an important first step of any statistical
analysis. dataMaid autogenerates a customizable data report with a thorough
summary of the checks and the results that a human can use to identify possible
errors. It provides an extendable suite of test for common potential
errors in a dataset.
Author: Anne Helby Petersen [aut],
Claus Thorn Ekstrøm [aut, cre]
Maintainer: Claus Thorn Ekstrøm <ekstrom@sund.ku.dk>
Diff between dataMaid versions 1.1.0 dated 2018-02-06 and 1.1.2 dated 2018-05-06
DESCRIPTION | 8 ++--- MD5 | 15 +++++----- R/identifyLoners.R | 40 +++++++++++++-------------- R/makeCodebook.R | 56 +++++++++++++++++++++++---------------- R/makeDataReport.R | 30 +++++++++++--------- build/vignette.rds |binary inst/doc/extending_dataMaid.html | 23 ++++++++-------- man/makeCodebook.Rd | 9 +++++- tests/testthat/testisLoner.R |only 9 files changed, 103 insertions(+), 78 deletions(-)
Title: Swarm Intelligence for Self-Organized Clustering
Description: Algorithms implementing populations of agents that interact with one another and sense their environment may exhibit emergent behavior such as self-organization and swarm intelligence. Here, a swarm system called databionic swarm (DBS) is introduced. DBS is able to adapt itself to structures of high-dimensional data such as natural clusters characterized by distance and/or density based structures in the data space. The first module is the parameter-free projection method called Pswarm (Pswarm()), which exploits the concepts of self-organization and emergence, game theory, swarm intelligence and symmetry considerations. The second module is the parameter-free high-dimensional data visualization technique, which generates projected points on the topographic map with hypsometric tints defined by the generalized U-matrix (GeneratePswarmVisualization()). The third module is the clustering method itself with non-critical parameters (DBSclustering()). Clustering can be verified by the visualization and vice versa. The term DBS refers to the method as a whole. It enables even a non-professional in the field of data mining to apply its algorithms for visualization and/or clustering to data sets with completely different structures drawn from diverse research fields. The package is based on the book of Thrun, M.C.: "Projection Based Clustering through Self-Organization and Swarm Intelligence" (2018) <DOI:10.1007/978-3-658-20540-9>. A comparison to 26 common clustering algorithms on 15 datasets is presented on the website.
Author: Michael Thrun [aut, cre, cph]
Maintainer: Michael Thrun <m.thrun@gmx.net>
Diff between DatabionicSwarm versions 1.0.1 dated 2018-03-07 and 1.0.3 dated 2018-05-06
DESCRIPTION | 14 ++++++------ MD5 | 22 ++++++++++---------- R/DBSclustering.R | 21 ++++++++++++++----- R/GeneratePswarmVisualization.R | 15 +++++++++++-- R/Pswarm.R | 40 ++++++++++++++++++------------------- R/RobustNormalization.R | 31 ++++++++++++++++++++++++---- man/DBSclustering.Rd | 16 +++++++++----- man/DatabionicSwarm-package.Rd | 10 +++++---- man/Delta3DWeightsC.Rd | 2 - man/GeneratePswarmVisualization.Rd | 2 - man/Pswarm.Rd | 16 ++++++++------ man/RobustNormalization.Rd | 9 +++++++- 12 files changed, 127 insertions(+), 71 deletions(-)
More information about DatabionicSwarm at CRAN
Permanent link
Title: Calculating Data Agreement Criterion Scores to Rank Experts
Based on Their Beliefs
Description: Allows to calculate Data Agreement Criterion (DAC) scores. This can be done to determine prior-data conflict or to evaluate and compare multiple priors, which can be experts' predictions. Bousquet (2008) <doi.org/10.1080/02664760802192981>.
Author: Duco Veen [aut, cre],
Naomi Schalken [aut],
Rens van de Schoot [aut]
Maintainer: Duco Veen <ducoveen@gmail.com>
Diff between DAC versions 0.1.0 dated 2017-09-08 and 0.1.1 dated 2018-05-06
DAC-0.1.0/DAC/R/DAC_Uniform.R |only DAC-0.1.0/DAC/man/DAC_Uniform.Rd |only DAC-0.1.1/DAC/DESCRIPTION | 23 ++++++++++++++++++----- DAC-0.1.1/DAC/MD5 | 10 ++++++---- DAC-0.1.1/DAC/NAMESPACE | 10 +++++++--- DAC-0.1.1/DAC/R/DAC_normal.R |only DAC-0.1.1/DAC/R/DAC_uniform.R |only DAC-0.1.1/DAC/man/DAC.normal.Rd |only DAC-0.1.1/DAC/man/DAC.uniform.Rd |only 9 files changed, 31 insertions(+), 12 deletions(-)
Title: Cyclic Coordinate Descent for Logistic, Poisson and Survival
Analysis
Description: This model fitting tool incorporates cyclic coordinate descent and
majorization-minimization approaches to fit a variety of regression models
found in large-scale observational healthcare data. Implementations focus
on computational optimization and fine-scale parallelization to yield
efficient inference in massive datasets.
Author: Marc A. Suchard [aut, cre],
Martijn J. Schuemie [aut],
Trevor R. Shaddox [aut]
Maintainer: Marc A. Suchard <msuchard@ucla.edu>
Diff between Cyclops versions 1.3.0 dated 2017-08-23 and 1.3.2 dated 2018-05-06
Cyclops-1.3.0/Cyclops/tests/testthat/test-weighted_cv.R |only Cyclops-1.3.2/Cyclops/DESCRIPTION | 6 ++-- Cyclops-1.3.2/Cyclops/MD5 | 17 +++++------- Cyclops-1.3.2/Cyclops/NEWS | 14 +++++++++ Cyclops-1.3.2/Cyclops/R/ModelFit.R | 3 +- Cyclops-1.3.2/Cyclops/README.md | 3 +- Cyclops-1.3.2/Cyclops/src/cyclops/CyclicCoordinateDescent.h | 9 ------ Cyclops-1.3.2/Cyclops/src/cyclops/engine/ModelSpecifics.h | 1 Cyclops-1.3.2/Cyclops/src/cyclops/engine/ParallelLoops.h | 9 ------ Cyclops-1.3.2/Cyclops/src/utils/HParSearch.cpp | 8 ----- 10 files changed, 29 insertions(+), 41 deletions(-)
Title: Conditional Random Fields
Description: Implements modeling and computational tools for conditional
random fields (CRF) model as well as other probabilistic undirected
graphical models of discrete data with pairwise and unary potentials.
Author: Ling-Yun Wu [aut, cre]
Maintainer: Ling-Yun Wu <wulingyun@gmail.com>
Diff between CRF versions 0.3-14 dated 2017-02-01 and 0.3-15 dated 2018-05-06
DESCRIPTION | 16 ++--- MD5 | 132 +++++++++++++++++++++++----------------------- R/train.R | 4 - build/vignette.rds |binary data/Chain.RData |binary data/Clique.RData |binary data/Loop.RData |binary data/Rain.RData |binary data/Small.RData |binary data/Tree.RData |binary inst/doc/Tutorial.pdf |binary man/CRF-package.Rd | 9 +-- man/Chain.Rd | 1 man/Clique.Rd | 1 man/Loop.Rd | 1 man/Rain.Rd | 1 man/Small.Rd | 1 man/Tree.Rd | 1 man/clamp.crf.Rd | 1 man/clamp.reset.Rd | 1 man/crf.nll.Rd | 1 man/crf.update.Rd | 5 - man/decode.block.Rd | 1 man/decode.chain.Rd | 1 man/decode.conditional.Rd | 1 man/decode.cutset.Rd | 1 man/decode.exact.Rd | 1 man/decode.greedy.Rd | 1 man/decode.icm.Rd | 1 man/decode.ilp.Rd | 1 man/decode.junction.Rd | 1 man/decode.lbp.Rd | 1 man/decode.marginal.Rd | 1 man/decode.sample.Rd | 1 man/decode.trbp.Rd | 1 man/decode.tree.Rd | 1 man/duplicate.crf.Rd | 1 man/get.logPotential.Rd | 1 man/get.potential.Rd | 1 man/infer.chain.Rd | 1 man/infer.conditional.Rd | 1 man/infer.cutset.Rd | 1 man/infer.exact.Rd | 1 man/infer.junction.Rd | 1 man/infer.lbp.Rd | 1 man/infer.sample.Rd | 1 man/infer.trbp.Rd | 1 man/infer.tree.Rd | 1 man/make.crf.Rd | 1 man/make.features.Rd | 1 man/make.par.Rd | 1 man/mrf.nll.Rd | 1 man/mrf.stat.Rd | 1 man/mrf.update.Rd | 1 man/sample.chain.Rd | 1 man/sample.conditional.Rd | 1 man/sample.cutset.Rd | 1 man/sample.exact.Rd | 1 man/sample.gibbs.Rd | 1 man/sample.junction.Rd | 1 man/sample.tree.Rd | 1 man/sub.crf.Rd | 1 man/train.crf.Rd | 1 man/train.mrf.Rd | 1 src/CRF.cpp | 36 ++++++++++++ src/CRF.h | 2 src/Train.cpp | 46 +++++++++++----- 67 files changed, 152 insertions(+), 149 deletions(-)
Title: Tests for Determining if the Covariance Structure of
2-Dimensional Data is Separable
Description: Functions for testing if the covariance structure of 2-dimensional data
(e.g. samples of surfaces X_i = X_i(s,t)) is separable, i.e. if covariance(X) =
C_1 x C_2.
A complete descriptions of the implemented tests can be found in the paper
Aston, John A. D.; Pigoli, Davide; Tavakoli, Shahin. Tests for separability in
nonparametric covariance operators of random surfaces. Ann. Statist. 45 (2017),
no. 4, 1431--1461. <doi:10.1214/16-AOS1495> <https://projecteuclid.org/euclid.aos/1498636862> <arXiv:1505.02023>.
Author: Shahin Tavakoli [aut, cre],
Davide Pigoli [ctb],
John Aston [ctb]
Maintainer: Shahin Tavakoli <s.tavakoli@warwick.ac.uk>
Diff between covsep versions 1.0.0 dated 2016-01-28 and 1.1.0 dated 2018-05-06
DESCRIPTION | 24 +++++--- MD5 | 36 ++++++------ NAMESPACE | 2 R/covsep.R | 103 +++++++++++++++++++++++-------------- man/C1.Rd | 17 +++--- man/C2.Rd | 15 ++--- man/HS_empirical_bootstrap_test.Rd | 15 +++-- man/HS_gaussian_bootstrap_test.Rd | 14 ++--- man/SurfacesData.Rd | 7 +- man/clt_test.Rd | 12 ++-- man/covsep.Rd | 15 +++-- man/difference_fullcov.Rd | 2 man/empirical_bootstrap_test.Rd | 33 +++++++---- man/gaussian_bootstrap_test.Rd | 36 +++++++----- man/generate_surface_data.Rd | 12 ++-- man/marginal_covariances.Rd | 3 - man/projected_differences.Rd | 4 - man/renormalize_mtnorm.Rd | 4 - man/rmtnorm.Rd | 3 - 19 files changed, 209 insertions(+), 148 deletions(-)
Title: An Implementation of Parsing and Writing Configuration File
(JSON/INI/YAML/TOML)
Description: Implements the JSON, INI, YAML and TOML parser for R setting and writing of configuration file. The functionality of this package is similar to that of package 'config'.
Author: Jianfeng Li [aut, cre] (<https://orcid.org/0000-0003-2349-208X>)
Maintainer: Jianfeng Li <lee_jianfeng@sjtu.edu.cn>
Diff between configr versions 0.3.2.1 dated 2018-02-26 and 0.3.2.2 dated 2018-05-06
ChangeLog | 4 DESCRIPTION | 8 MD5 | 18 build/vignette.rds |binary inst/doc/configr.Rmd | 8 inst/doc/configr.html | 1234 +++++++++++++++++++++++++++--------------------- inst/doc/filetypes.Rmd | 8 inst/doc/filetypes.html | 400 +++++++++------ vignettes/configr.Rmd | 8 vignettes/filetypes.Rmd | 8 10 files changed, 992 insertions(+), 704 deletions(-)
Title: Interface with the United Nations Comtrade API
Description: Interface with and extract data from the United Nations Comtrade
API <https://comtrade.un.org/data/>. Comtrade provides country level shipping
data for a variety of commodities, these functions allow for easy API query
and data returned as a tidy data frame.
Author: Chris Muir [aut, cre],
Alicia Schep [rev] (<https://orcid.org/0000-0002-3915-0618>, Alicia
reviewed the package for rOpenSci, see
https://github.com/ropensci/onboarding/issues/141),
Rafael Hellwig [rev] (<https://orcid.org/0000-0002-3092-3493>, Rafael
reviewed the package for rOpenSci, see
https://github.com/ropensci/onboarding/issues/141)
Maintainer: Chris Muir <chrismuirRVA@gmail.com>
Diff between comtradr versions 0.1.0 dated 2017-10-23 and 0.2.1 dated 2018-05-06
comtradr-0.1.0/comtradr/tests/testthat/test-ct_update_databases.R |only comtradr-0.2.1/comtradr/DESCRIPTION | 37 comtradr-0.2.1/comtradr/MD5 | 87 comtradr-0.2.1/comtradr/NAMESPACE | 24 comtradr-0.2.1/comtradr/NEWS.md | 111 - comtradr-0.2.1/comtradr/R/comtradr.R | 119 - comtradr-0.2.1/comtradr/R/ct_commodity_db_type.R | 72 comtradr-0.2.1/comtradr/R/ct_commodity_lookup.R | 220 +- comtradr-0.2.1/comtradr/R/ct_country_lookup.R | 126 - comtradr-0.2.1/comtradr/R/ct_search.R | 999 +++++----- comtradr-0.2.1/comtradr/R/ct_update_databases.R | 539 ++--- comtradr-0.2.1/comtradr/R/ct_use_pretty_cols.R | 92 comtradr-0.2.1/comtradr/R/rate_limit.R | 173 - comtradr-0.2.1/comtradr/R/utils.R | 199 + comtradr-0.2.1/comtradr/R/zzz.R | 88 comtradr-0.2.1/comtradr/README.md | 316 +-- comtradr-0.2.1/comtradr/build/vignette.rds |binary comtradr-0.2.1/comtradr/inst/doc/comtradr-vignette.R | 375 ++- comtradr-0.2.1/comtradr/inst/doc/comtradr-vignette.Rmd | 579 +++-- comtradr-0.2.1/comtradr/inst/doc/comtradr-vignette.html | 848 ++++---- comtradr-0.2.1/comtradr/inst/extdata/commodity_table.rda |binary comtradr-0.2.1/comtradr/inst/extdata/country_table.rda |binary comtradr-0.2.1/comtradr/inst/extdata/vignette_data_1.rda |only comtradr-0.2.1/comtradr/inst/extdata/vignette_data_2.rda |only comtradr-0.2.1/comtradr/inst/extdata/vignette_data_3.rda |only comtradr-0.2.1/comtradr/man/comtradr.Rd | 110 - comtradr-0.2.1/comtradr/man/ct_commodity_db_type.Rd | 84 comtradr-0.2.1/comtradr/man/ct_commodity_lookup.Rd | 134 - comtradr-0.2.1/comtradr/man/ct_country_lookup.Rd | 94 comtradr-0.2.1/comtradr/man/ct_get_remaining_hourly_queries.Rd | 34 comtradr-0.2.1/comtradr/man/ct_get_reset_time.Rd | 42 comtradr-0.2.1/comtradr/man/ct_pretty_cols.Rd | 34 comtradr-0.2.1/comtradr/man/ct_register_token.Rd | 48 comtradr-0.2.1/comtradr/man/ct_search.Rd | 271 +- comtradr-0.2.1/comtradr/man/ct_update_databases.Rd | 177 - comtradr-0.2.1/comtradr/man/ct_use_pretty_cols.Rd | 58 comtradr-0.2.1/comtradr/tests/testthat.R | 8 comtradr-0.2.1/comtradr/tests/testthat/test-1_ct_update_databases.R |only comtradr-0.2.1/comtradr/tests/testthat/test-ct_commodity_db_type.R | 10 comtradr-0.2.1/comtradr/tests/testthat/test-ct_commodity_lookup.R | 162 - comtradr-0.2.1/comtradr/tests/testthat/test-ct_country_lookup.R | 102 - comtradr-0.2.1/comtradr/tests/testthat/test-ct_get_remaining_hourly_queries.R | 10 comtradr-0.2.1/comtradr/tests/testthat/test-ct_get_reset_time.R | 10 comtradr-0.2.1/comtradr/tests/testthat/test-ct_register_token.R | 47 comtradr-0.2.1/comtradr/tests/testthat/test-ct_search.R | 408 ++-- comtradr-0.2.1/comtradr/tests/testthat/test-ct_use_pretty_cols.R | 54 comtradr-0.2.1/comtradr/vignettes/comtradr-vignette.Rmd | 579 +++-- 47 files changed, 3913 insertions(+), 3567 deletions(-)
Title: Generate 'CodeMeta' Metadata for R Packages
Description: The 'Codemeta' Project defines a 'JSON-LD' format for describing
software metadata, as detailed at <https://codemeta.github.io>. This package
provides utilities to generate, parse, and modify 'codemeta.json' files
automatically for R packages, as well as tools and examples for working with
'codemeta.json' 'JSON-LD' more generally.
Author: Carl Boettiger [aut, cre, cph]
(<https://orcid.org/0000-0002-1642-628X>),
Anna Krystalli [rev, ctb] (<https://orcid.org/0000-0002-2378-4915>),
Toph Allen [rev] (<https://orcid.org/0000-0003-4580-091X>),
Maëlle Salmon [ctb, aut] (<https://orcid.org/0000-0002-2815-0399>),
rOpenSci [fnd] (https://ropensci.org/),
Katrin Leinweber [ctb],
Noam Ross [ctb] (<https://orcid.org/0000-0002-2136-0000>),
Arfon Smith [ctb],
Jeroen Ooms [ctb] (<https://orcid.org/0000-0002-4035-0289>)
Maintainer: Carl Boettiger <cboettig@gmail.com>
Diff between codemetar versions 0.1.5 dated 2018-03-21 and 0.1.6 dated 2018-05-06
codemetar-0.1.5/codemetar/LICENSE |only codemetar-0.1.5/codemetar/inst/doc/A-codemeta-intro.R |only codemetar-0.1.5/codemetar/inst/doc/A-codemeta-intro.Rmd |only codemetar-0.1.5/codemetar/inst/doc/A-codemeta-intro.html |only codemetar-0.1.5/codemetar/inst/doc/B-translating.R |only codemetar-0.1.5/codemetar/inst/doc/B-translating.Rmd |only codemetar-0.1.5/codemetar/inst/doc/B-translating.html |only codemetar-0.1.5/codemetar/inst/doc/C-validation-in-json-ld.R |only codemetar-0.1.5/codemetar/inst/doc/C-validation-in-json-ld.Rmd |only codemetar-0.1.5/codemetar/inst/doc/C-validation-in-json-ld.html |only codemetar-0.1.5/codemetar/inst/doc/D-codemeta-parsing.R |only codemetar-0.1.5/codemetar/inst/doc/D-codemeta-parsing.Rmd |only codemetar-0.1.5/codemetar/inst/doc/D-codemeta-parsing.html |only codemetar-0.1.5/codemetar/inst/extdata/licenses.R |only codemetar-0.1.5/codemetar/vignettes/A-codemeta-intro.Rmd |only codemetar-0.1.5/codemetar/vignettes/B-translating.Rmd |only codemetar-0.1.5/codemetar/vignettes/C-validation-in-json-ld.Rmd |only codemetar-0.1.5/codemetar/vignettes/D-codemeta-parsing.Rmd |only codemetar-0.1.6/codemetar/DESCRIPTION | 78 +++- codemetar-0.1.6/codemetar/MD5 | 100 +++--- codemetar-0.1.6/codemetar/NAMESPACE | 6 codemetar-0.1.6/codemetar/NEWS.md | 50 +++ codemetar-0.1.6/codemetar/R/codemeta_description.R | 106 ++++-- codemetar-0.1.6/codemetar/R/codemeta_readme.R |only codemetar-0.1.6/codemetar/R/create_codemeta.R | 107 +++++- codemetar-0.1.6/codemetar/R/crosswalk.R | 9 codemetar-0.1.6/codemetar/R/extract_badges.R |only codemetar-0.1.6/codemetar/R/give_opinions.R |only codemetar-0.1.6/codemetar/R/guess_metadata.R | 161 +++++++--- codemetar-0.1.6/codemetar/R/parse_citation.R | 17 - codemetar-0.1.6/codemetar/R/parse_depends.R | 101 ++++-- codemetar-0.1.6/codemetar/R/parse_people.R | 11 codemetar-0.1.6/codemetar/R/utils.R | 91 +++++ codemetar-0.1.6/codemetar/R/write_codemeta.R | 52 ++- codemetar-0.1.6/codemetar/README.md | 107 ++++-- codemetar-0.1.6/codemetar/build/vignette.rds |binary codemetar-0.1.6/codemetar/inst/doc/codemeta-intro.R |only codemetar-0.1.6/codemetar/inst/doc/codemeta-intro.Rmd |only codemetar-0.1.6/codemetar/inst/doc/codemeta-intro.html |only codemetar-0.1.6/codemetar/inst/examples/CITATION_osmdata |only codemetar-0.1.6/codemetar/inst/examples/DESCRIPTION_Rforge |only codemetar-0.1.6/codemetar/inst/examples/DESCRIPTION_ex1.dcf | 4 codemetar-0.1.6/codemetar/inst/examples/DESCRIPTION_good |only codemetar-0.1.6/codemetar/inst/examples/DESCRIPTION_no_URL |only codemetar-0.1.6/codemetar/inst/examples/DESCRIPTION_no_bugreports |only codemetar-0.1.6/codemetar/inst/examples/DESCRIPTION_plainauthors |only codemetar-0.1.6/codemetar/inst/examples/DESCRIPTION_sysreqs |only codemetar-0.1.6/codemetar/inst/examples/DESCRIPTION_two_URLs |only codemetar-0.1.6/codemetar/inst/examples/DESCRIPTION_twomaintainers |only codemetar-0.1.6/codemetar/inst/examples/DESCRIPTION_with_remote |only codemetar-0.1.6/codemetar/inst/examples/DESCRIPTION_wrongURLS |only codemetar-0.1.6/codemetar/inst/examples/README_codemetar_bad.md |only codemetar-0.1.6/codemetar/inst/examples/README_codemetar_good.md |only codemetar-0.1.6/codemetar/inst/examples/README_fakepackage.md |only codemetar-0.1.6/codemetar/inst/examples/README_fakepackage2.md |only codemetar-0.1.6/codemetar/inst/templates |only codemetar-0.1.6/codemetar/man/codemetar-package.Rd | 13 codemetar-0.1.6/codemetar/man/create_codemeta.Rd | 7 codemetar-0.1.6/codemetar/man/crosswalk_table.Rd | 2 codemetar-0.1.6/codemetar/man/extract_badges.Rd |only codemetar-0.1.6/codemetar/man/give_opinions.Rd |only codemetar-0.1.6/codemetar/man/write_codemeta.Rd | 17 - codemetar-0.1.6/codemetar/tests/testthat/test-cloned-repo.R | 1 codemetar-0.1.6/codemetar/tests/testthat/test-codemeta_description.R | 37 ++ codemetar-0.1.6/codemetar/tests/testthat/test-codemeta_validate.R | 4 codemetar-0.1.6/codemetar/tests/testthat/test-extract_badges.R |only codemetar-0.1.6/codemetar/tests/testthat/test-give_opinions.R |only codemetar-0.1.6/codemetar/tests/testthat/test-guess_metadata.R | 45 ++ codemetar-0.1.6/codemetar/tests/testthat/test-parse_citation.R | 7 codemetar-0.1.6/codemetar/tests/testthat/test-parse_depends.R | 53 ++- codemetar-0.1.6/codemetar/tests/testthat/test-write_codemeta.R | 56 +-- codemetar-0.1.6/codemetar/vignettes/articles |only codemetar-0.1.6/codemetar/vignettes/codemeta-intro.Rmd |only 73 files changed, 919 insertions(+), 323 deletions(-)
Title: Covariate Balance Tables and Plots
Description: Generate balance tables and plots for covariates of groups preprocessed through matching, weighting or subclassification, for example, using propensity scores. Includes integration with 'MatchIt', 'twang', 'Matching', 'optmatch', 'CBPS', 'ebal', and 'WeightIt' for assessing balance on the output of their preprocessing functions. Users can also specify data for balance assessment not generated through the above packages. Also included are methods for assessing balance in clustered or multiply imputed data sets.
Author: Noah Greifer [aut, cre]
Maintainer: Noah Greifer <noah.greifer@gmail.com>
Diff between cobalt versions 3.2.2 dated 2018-03-13 and 3.2.3 dated 2018-05-06
DESCRIPTION | 10 - MD5 | 57 +++--- NAMESPACE | 2 NEWS.md | 19 +- R/bal.plot.R | 1 R/bal.tab.R | 80 ++++----- R/functions_for_processing.R | 231 ++++++++++++++++++++------- R/love.plot.R | 60 ++++--- R/print.bal.tab.R | 11 - R/utilities.R | 49 ++--- R/x2base.R | 246 +++++++++++++++-------------- build/partial.rdb |only build/vignette.rds |binary inst/doc/cobalt_A0_basic_use.R | 23 +- inst/doc/cobalt_A0_basic_use.Rmd | 121 +++++++------- inst/doc/cobalt_A0_basic_use.html | 241 ++++++++++++++-------------- inst/doc/cobalt_A1_other_packages.Rmd | 2 inst/doc/cobalt_A1_other_packages.html | 6 inst/doc/cobalt_A2_cluster_imp.Rmd | 32 +-- inst/doc/cobalt_A2_cluster_imp.html | 194 +++++++++++++--------- inst/doc/cobalt_A3_longitudinal_treat.Rmd | 14 - inst/doc/cobalt_A3_longitudinal_treat.html | 45 +++-- man/bal.tab.Rd | 6 man/bal.tab.df.formula.Rd | 18 -- man/bal.tab.matchit.Rd | 8 man/love.plot.Rd | 4 vignettes/cobalt_A0_basic_use.Rmd | 121 +++++++------- vignettes/cobalt_A1_other_packages.Rmd | 2 vignettes/cobalt_A2_cluster_imp.Rmd | 32 +-- vignettes/cobalt_A3_longitudinal_treat.Rmd | 14 - 30 files changed, 934 insertions(+), 715 deletions(-)
Title: Methods for Joint Dimension Reduction and Clustering
Description: A class of methods that combine dimension reduction and clustering of continuous or categorical data. For continuous data, the package contains implementations of factorial K-means (Vichi and Kiers 2001; <DOI:10.1016/S0167-9473(00)00064-5>) and reduced K-means (De Soete and Carroll 1994; <DOI:10.1007/978-3-642-51175-2_24>); both methods that combine principal component analysis with K-means clustering. For categorical data, the package provides MCA K-means (Hwang, Dillon and Takane 2006; <DOI:10.1007/s11336-004-1173-x>), i-FCB (Iodice D'Enza and Palumbo 2013, <DOI:10.1007/s00180-012-0329-x>) and Cluster Correspondence Analysis (van de Velden, Iodice D'Enza and Palumbo 2017; <DOI:10.1007/s11336-016-9514-0>), which combine multiple correspondence analysis with K-means.
Author: Angelos Markos [aut, cre], Alfonso Iodice D'Enza [aut], Michel van de Velden [ctb]
Maintainer: Angelos Markos <amarkos@gmail.com>
Diff between clustrd versions 1.2.1 dated 2018-04-16 and 1.2.2 dated 2018-05-06
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- R/plot.clusmca.R | 47 +++++++++++++++++++++++------------------------ R/plot.cluspca.R | 21 +++++++++++---------- man/plot.clusmca.Rd | 2 +- man/plot.cluspca.Rd | 2 +- 6 files changed, 45 insertions(+), 45 deletions(-)
Title: Gaussian Mixture Models, K-Means, Mini-Batch-Kmeans and
K-Medoids Clustering
Description: Gaussian mixture models, k-means, mini-batch-kmeans and k-medoids clustering with the option to plot, validate, predict (new data) and estimate the optimal number of clusters. The package takes advantage of 'RcppArmadillo' to
speed up the computationally intensive parts of the functions. For more information, see (i) "Clustering in an Object-Oriented Environment" by Anja Struyf, Mia Hubert, Peter Rousseeuw (1997), Journal of Statistical Software, <doi:10.18637/jss.v001.i04>; (ii) "Web-scale k-means clustering" by D. Sculley (2010), ACM Digital Library, <doi:10.1145/1772690.1772862>; (iii) "Armadillo: a template-based C++ library for linear algebra" by Sanderson et al (2016), The Journal of Open Source Software, <doi:10.21105/joss.00026>.
Author: Lampros Mouselimis <mouselimislampros@gmail.com>
Maintainer: Lampros Mouselimis <mouselimislampros@gmail.com>
Diff between ClusterR versions 1.1.1 dated 2018-02-26 and 1.1.2 dated 2018-05-06
DESCRIPTION | 14 +++----- MD5 | 14 ++++---- NEWS.md | 5 ++ R/clustering_functions.R | 63 +++++++++++++++++++++++++++---------- README.md | 2 - build/vignette.rds |binary inst/doc/the_clusterR_package.html | 12 +++---- src/init.c | 2 - 8 files changed, 72 insertions(+), 40 deletions(-)
Title: Simulation and Analysis Tools for Clinical Dose Response
Modeling
Description: Bayesian and ML Emax model fitting, graphics and simulation for clinical dose
response. The summary data from the dose response meta-analyses in
Thomas, Sweeney, and Somayaji (2014) <doi:10.1080/19466315.2014.924876> and
Thomas and Roy (2016) <doi:10.1080/19466315.2016.1256229> are included
in the package. The prior distributions for the Bayesian analyses default to
the posterior predictive distributions derived from these references.
Author: Neal Thomas [aut, cre] (<https://orcid.org/0000-0002-1915-8487>),
Jing Wu [aut]
Maintainer: Neal Thomas <snthomas99@gmail.com>
Diff between clinDR versions 1.7 dated 2018-02-19 and 1.8 dated 2018-05-06
DESCRIPTION | 8 MD5 | 100 +++--- NAMESPACE | 20 + R/emaxalt.R | 23 - R/emaxsim.R | 14 R/emaxsimB.R | 38 +- R/fitEmax.R | 16 - R/generic.R |only R/plot.fitEmax.R | 11 R/predict.emaxsimB.R |only R/predict.fitEmaxB.R | 12 R/summary.emaxsim.R | 68 +++- R/summary.emaxsimB.R | 43 ++ inst/NEWS | 11 inst/tests/extraGraphics/pdfoutput/output.densityplot_new.pdf |binary inst/tests/extraGraphics/pdfoutput/output.densityplot_old.pdf |binary inst/tests/extraGraphics/pdfoutput/output.emaxsimBobj_new.pdf |binary inst/tests/extraGraphics/pdfoutput/output.emaxsimBobj_old.pdf |binary inst/tests/extraGraphics/pdfoutput/output.emaxsimobj_new.pdf |binary inst/tests/extraGraphics/pdfoutput/output.emaxsimobj_old.pdf |binary inst/tests/extraGraphics/pdfoutput/output.fitEmaxB_new.pdf |binary inst/tests/extraGraphics/pdfoutput/output.fitEmaxB_old.pdf |binary inst/tests/extraGraphics/pdfoutput/output.fitEmax_new.pdf |binary inst/tests/extraGraphics/pdfoutput/output.fitEmax_old.pdf |binary inst/tests/extraGraphics/pdfoutput/output.plotB_new.pdf |binary inst/tests/extraGraphics/pdfoutput/output.plotB_old.pdf |binary inst/tests/extraGraphics/pdfoutput/output.plotD_new.pdf |binary inst/tests/extraGraphics/pdfoutput/output.plotD_old.pdf |binary inst/tests/extraGraphics/runGraphics.R | 7 inst/tests/extraGraphics/test.densityplots.R | 8 inst/tests/extraGraphics/test.plot.fitEmax.R | 4 inst/tests/extraGraphics/test.plotB.R | 25 - inst/tests/runIndvidualTests.R | 11 inst/tests/test.checkMonoEmax.R | 30 + inst/tests/test.emaxsim.R | 96 +++++- inst/tests/test.emaxsimB.R | 155 +++++++++- inst/tests/test.fitEmax.R | 36 +- inst/tests/test.fitEmaxB.R | 21 - inst/tests/test.targetcodes.R | 22 - man/checkMonoEmax.Rd | 11 man/coef.Rd |only man/emaxalt.Rd | 11 man/emaxsim.Rd | 8 man/emaxsimB.Rd | 15 man/fitEmax.Rd | 7 man/fitEmaxB.Rd | 2 man/plot.plotB.Rd | 5 man/plotB.Rd | 5 man/plotBdensity.Rd | 8 man/predict.emaxsimB.Rd |only man/sigma.Rd |only man/summary.emaxsim.Rd | 11 man/summary.emaxsimB.Rd | 9 man/vcov.Rd |only 54 files changed, 611 insertions(+), 260 deletions(-)
Title: Climate Tools (Series Homogenization and Derived Products)
Description: Functions for the quality control, homogenization and missing data infilling of climatological series and to obtain climatological summaries and grids from the results. Also functions to draw wind-roses and Walter&Lieth climate diagrams.
Author: Jose A. Guijarro <jguijarrop@aemet.es>
Maintainer: Jose A. Guijarro <jguijarrop@aemet.es>
Diff between climatol versions 3.1 dated 2018-04-26 and 3.1.1 dated 2018-05-06
DESCRIPTION | 8 ++++---- MD5 | 12 +++++++----- NEWS | 3 +++ R/depurdat.R | 21 +++++++++++++++++---- data/datalist | 1 + data/pcp_results.rda |only man/dahgrid.Rd | 9 +++------ man/pcp_results.Rd |only 8 files changed, 35 insertions(+), 19 deletions(-)
Title: R Client for the 'Civis data science API'
Description: A set of tools around common workflows and a convenient interface to make
requests directly to the 'Civis data science API' <https://www.civisanalytics.com/platform/>.
Author: Patrick Miller [cre, aut],
Keith Ingersoll [aut],
Bill Lattner [ctb],
Anh Le [ctb],
Michelangelo D'Agostino [ctb],
Sam Weiss [ctb],
Stephen Hoover [ctb],
Danning Chen [ctb],
Elizabeth Sander [ctb]
Maintainer: Patrick Miller <pmiller@civisanalytics.com>
Diff between civis versions 1.3.0 dated 2018-03-30 and 1.4.0 dated 2018-05-06
civis-1.3.0/civis/man/enhancements_delete_person_matching_runs.Rd |only civis-1.3.0/civis/man/enhancements_get_person_matching.Rd |only civis-1.3.0/civis/man/enhancements_get_person_matching_runs.Rd |only civis-1.3.0/civis/man/enhancements_list_person_matching_runs.Rd |only civis-1.3.0/civis/man/enhancements_list_person_matching_runs_logs.Rd |only civis-1.3.0/civis/man/enhancements_list_person_matching_runs_outputs.Rd |only civis-1.3.0/civis/man/enhancements_patch_person_matching.Rd |only civis-1.3.0/civis/man/enhancements_post_person_matching.Rd |only civis-1.3.0/civis/man/enhancements_post_person_matching_cancel.Rd |only civis-1.3.0/civis/man/enhancements_post_person_matching_runs.Rd |only civis-1.3.0/civis/man/enhancements_put_person_matching.Rd |only civis-1.3.0/civis/tests/testthat/test-DBI.R |only civis-1.4.0/civis/DESCRIPTION | 8 civis-1.4.0/civis/MD5 | 77 civis-1.4.0/civis/NAMESPACE | 40 civis-1.4.0/civis/R/civis_ml_utils.R | 6 civis-1.4.0/civis/R/dbi-driver.R | 3 civis-1.4.0/civis/R/generated_client.R | 2184 ++++++---- civis-1.4.0/civis/R/io.R | 4 civis-1.4.0/civis/R/sysdata.rda |binary civis-1.4.0/civis/build/vignette.rds |binary civis-1.4.0/civis/man/DBI.Rd | 1 civis-1.4.0/civis/man/civis_to_multifile_csv.Rd | 2 civis-1.4.0/civis/man/dbi_driver.Rd | 1 civis-1.4.0/civis/man/jobs_delete_runs.Rd |only civis-1.4.0/civis/man/media_get_optimizations.Rd | 1 civis-1.4.0/civis/man/media_patch_optimizations.Rd | 2 civis-1.4.0/civis/man/media_post_optimizations.Rd | 2 civis-1.4.0/civis/man/media_post_optimizations_clone.Rd | 1 civis-1.4.0/civis/man/media_put_optimizations_archive.Rd | 1 civis-1.4.0/civis/man/notebooks_list_deployments_logs.Rd |only civis-1.4.0/civis/man/reports_post_services.Rd |only civis-1.4.0/civis/man/results_post_services.Rd |only civis-1.4.0/civis/man/services_delete.Rd |only civis-1.4.0/civis/man/services_delete_deployments.Rd |only civis-1.4.0/civis/man/services_delete_projects.Rd |only civis-1.4.0/civis/man/services_delete_shares_groups.Rd |only civis-1.4.0/civis/man/services_delete_shares_users.Rd |only civis-1.4.0/civis/man/services_delete_tokens.Rd |only civis-1.4.0/civis/man/services_get.Rd |only civis-1.4.0/civis/man/services_get_deployments.Rd |only civis-1.4.0/civis/man/services_list.Rd |only civis-1.4.0/civis/man/services_list_deployments.Rd |only civis-1.4.0/civis/man/services_list_deployments_logs.Rd |only civis-1.4.0/civis/man/services_list_projects.Rd |only civis-1.4.0/civis/man/services_list_shares.Rd |only civis-1.4.0/civis/man/services_list_tokens.Rd |only civis-1.4.0/civis/man/services_patch.Rd |only civis-1.4.0/civis/man/services_post.Rd |only civis-1.4.0/civis/man/services_post_clone.Rd |only civis-1.4.0/civis/man/services_post_deployments.Rd |only civis-1.4.0/civis/man/services_post_redeploy.Rd |only civis-1.4.0/civis/man/services_post_tokens.Rd |only civis-1.4.0/civis/man/services_put.Rd |only civis-1.4.0/civis/man/services_put_archive.Rd |only civis-1.4.0/civis/man/services_put_projects.Rd |only civis-1.4.0/civis/man/services_put_shares_groups.Rd |only civis-1.4.0/civis/man/services_put_shares_users.Rd |only civis-1.4.0/civis/tests/testthat/test_civis_ml.R | 2 civis-1.4.0/civis/tools/integration_tests/smoke_test.R | 28 60 files changed, 1578 insertions(+), 785 deletions(-)
Title: Fits a Catenary to Given Points
Description: Gives methods to create a catenary object and then plot it and get
properties of it. Can construct from parameters or endpoints. Also can get
catenary fitted to data.
Author: Jonathan Tuke [aut, cre],
Matthew Roughan [aut]
Maintainer: Jonathan Tuke <simon.tuke@adelaide.edu.au>
Diff between catenary versions 1.1.1 dated 2015-11-18 and 1.1.2 dated 2018-05-06
catenary-1.1.1/catenary/man/Summary.Rd |only catenary-1.1.2/catenary/DESCRIPTION | 14 ++- catenary-1.1.2/catenary/MD5 | 62 +++++++++-------- catenary-1.1.2/catenary/NAMESPACE | 3 catenary-1.1.2/catenary/NEWS | 6 + catenary-1.1.2/catenary/R/catenary.R | 33 +++++---- catenary-1.1.2/catenary/R/ctesiphon.R | 2 catenary-1.1.2/catenary/R/fitCatEndPts.R | 4 - catenary-1.1.2/catenary/R/fittedCatenary.R | 55 ++++++++++----- catenary-1.1.2/catenary/R/getFunctionEnvelopeCat.R | 2 catenary-1.1.2/catenary/build |only catenary-1.1.2/catenary/inst/doc |only catenary-1.1.2/catenary/man/L.Rd | 2 catenary-1.1.2/catenary/man/catenary-class.Rd | 2 catenary-1.1.2/catenary/man/catenary.Rd | 2 catenary-1.1.2/catenary/man/ctesiphon.Rd | 3 catenary-1.1.2/catenary/man/f.Rd | 1 catenary-1.1.2/catenary/man/fitCat.Rd | 1 catenary-1.1.2/catenary/man/fitCatEndPts.Rd | 1 catenary-1.1.2/catenary/man/fitMaxCat.Rd | 1 catenary-1.1.2/catenary/man/fitNaturalCat.Rd | 1 catenary-1.1.2/catenary/man/fittedCatenary-class.Rd | 4 - catenary-1.1.2/catenary/man/fittedCatenary.Rd | 1 catenary-1.1.2/catenary/man/getCatLength.Rd | 1 catenary-1.1.2/catenary/man/getFunctionEnvelopeCat.Rd | 3 catenary-1.1.2/catenary/man/getFunctionEnvelopePara.Rd | 1 catenary-1.1.2/catenary/man/getPoints.Rd | 4 - catenary-1.1.2/catenary/man/gof.Rd |only catenary-1.1.2/catenary/man/minmax.Rd | 2 catenary-1.1.2/catenary/man/minmaxLength.Rd | 1 catenary-1.1.2/catenary/man/plot.Rd | 4 - catenary-1.1.2/catenary/man/show.Rd |only catenary-1.1.2/catenary/man/vertex.Rd | 2 catenary-1.1.2/catenary/vignettes |only 34 files changed, 126 insertions(+), 92 deletions(-)
Title: 'caret' Applications for Spatial-Temporal Models
Description: Supporting functionality to run 'caret' with spatial or spatial-temporal data. 'caret' is a frequently used package for model training and prediction using machine learning. This package includes functions to improve spatial-temporal modelling tasks using 'caret'. It prepares data for Leave-Location-Out and Leave-Time-Out cross-validation which are target-oriented validation strategies for spatial-temporal models. To decrease overfitting and improve model performances, the package implements a forward feature selection that selects suitable predictor variables in view to their contribution to the target-oriented performance.
Author: Hanna Meyer [cre, aut],
Chris Reudenbach [ctb],
Marvin Ludwig [ctb],
Thomas Nauss [ctb]
Maintainer: Hanna Meyer <hanna.meyer@geo.uni-marburg.de>
Diff between CAST versions 0.1.0 dated 2018-01-09 and 0.2.0 dated 2018-05-06
DESCRIPTION | 14 +++++---- MD5 | 14 +++++---- NAMESPACE | 2 + NEWS.md |only R/CAST-package.R | 5 +-- R/ffs.R | 83 ++++++++++++++++++++++++++++++------------------------- R/plot_ffs.R |only README.md |only man/CAST.Rd | 2 - man/plot_ffs.Rd |only 10 files changed, 69 insertions(+), 51 deletions(-)
Title: Bayesian Ordination and Regression AnaLysis
Description: Bayesian approaches for analyzing multivariate data in ecology. Estimation is performed using Markov Chain Monte Carlo (MCMC) methods via Three. JAGS types of models may be fitted: 1) With explanatory variables only, boral fits independent column Generalized Linear Models (GLMs) to each column of the response matrix; 2) With latent variables only, boral fits a purely latent variable model for model-based unconstrained ordination; 3) With explanatory and latent variables, boral fits correlated column GLMs with latent variables to account for any residual correlation between the columns of the response matrix.
Author: Francis K.C. Hui <fhui28@gmail.com>, with contributions from Wafe Blanchard <wade.blanchard@anu.edu.au>
Maintainer: Francis Hui <fhui28@gmail.com>
Diff between boral versions 1.5 dated 2018-01-08 and 1.6 dated 2018-05-06
DESCRIPTION | 10 +++--- MD5 | 36 ++++++++++++------------ NAMESPACE | 2 - R/auxilaryfunctions.R | 37 ++++++++++++++----------- R/boral.jags.R | 65 ++++++++++++++++++++------------------------- R/makejagsboralmodel.R | 4 +- R/makejagsboralnullmodel.R | 4 +- R/unseenfunctions.R | 8 ++--- inst/NEWS.Rd | 14 ++------- man/about.ssvs.Rd | 4 +- man/boral.Rd | 16 ++++------- man/calc.condlogLik.Rd | 2 - man/calc.logLik.lv0.Rd | 2 - man/calc.marglogLik.Rd | 9 ++---- man/create.life.Rd | 2 - man/get.dic.Rd | 4 -- man/get.measures.Rd | 4 ++ man/get.more.measures.Rd | 4 ++ man/summary.boral.Rd | 6 ++-- 19 files changed, 108 insertions(+), 125 deletions(-)
Title: Fast Bayesian Inference in Large Gaussian Graphical Models
Description: Fast Bayesian inference of marginal and conditional independence structures between variables from high-dimensional data (Leday and Richardson (2018) <arXiv:1803.08155>).
Author: Gwenael G.R. Leday [cre, aut],
Ilaria Speranza [aut],
Harry Gray [ctb]
Maintainer: Gwenael G.R. Leday <gwenael.leday@mrc-bsu.cam.ac.uk>
Diff between beam versions 1.0.1 dated 2018-04-18 and 1.0.2 dated 2018-05-06
DESCRIPTION | 10 +-- MD5 | 10 +-- R/beam.select.r | 141 +++++++++++----------------------------------------- man/beam-package.Rd | 12 ++-- man/beam.Rd | 6 +- man/beam.select.Rd | 18 +++--- 6 files changed, 59 insertions(+), 138 deletions(-)
Title: Bayesian Structure Learning in Graphical Models using
Birth-Death MCMC
Description: Provides statistical tools for Bayesian structure learning in undirected graphical models for continuous, discrete, and mixed data. The package is implemented the recent improvements in the Bayesian graphical models literature, including Mohammadi and Wit (2015) <https://doi:10.1214/14-BA889> and Mohammadi et al. (2017) <https://doi:10.1111/rssc.12171>. To speed up the computations, the BDMCMC sampling algorithms are implemented in parallel using OpenMP in C++.
Author: Reza Mohammadi <https://orcid.org/0000-0001-9538-0648> and Ernst Wit <https://orcid.org/0000-0002-3671-9610>
Maintainer: Reza Mohammadi <a.mohammadi@uva.nl>
Diff between BDgraph versions 2.47 dated 2018-04-25 and 2.48 dated 2018-05-06
DESCRIPTION | 10 +++++----- MD5 | 20 ++++++++++---------- NAMESPACE | 7 +++++-- R/bdgraph.R | 3 ++- R/bdgraph.mpl.R | 1 + R/bdgraph.sim.R | 38 +++++++++++++++++++++++++++----------- R/bdgraph.ts.R | 17 +++++++++-------- R/graph.sim.R | 7 +++++-- R/rgcwish.R | 1 + R/rgwish.R | 14 +++++++++++--- R/rwish.R | 7 +++++-- 11 files changed, 81 insertions(+), 44 deletions(-)
Title: Bayesian Variable Selection and Model Averaging using Bayesian
Adaptive Sampling
Description: Package for Bayesian Variable Selection and Model Averaging in linear models and
generalized linear models using stochastic or
deterministic sampling without replacement from posterior
distributions. Prior distributions on coefficients are
from Zellner's g-prior or mixtures of g-priors
corresponding to the Zellner-Siow Cauchy Priors or the
mixture of g-priors from Liang et al (2008)
<DOI:10.1198/016214507000001337>
for linear models or mixtures of g-priors in GLMs of Li and Clyde (2015)
<arXiv:1503.06913>. Other model
selection criteria include AIC, BIC and Empirical Bayes estimates of g.
Sampling probabilities may be updated based on the sampled models
using Sampling w/out Replacement or an efficient MCMC algorithm
samples models using the BAS tree structure as an efficient hash table.
Uniform priors over all models or beta-binomial prior distributions on
model size are allowed, and for large p truncated priors on the model
space may be used. The user may force variables to always be included.
Details behind the sampling algorithm are provided in
Clyde, Ghosh and Littman (2010) <DOI:10.1198/jcgs.2010.09049>.
This material is based upon work supported by the National Science
Foundation under Grant DMS-1106891. Any opinions, findings, and
conclusions or recommendations expressed in this material are those of
the author(s) and do not necessarily reflect the views of the
National Science Foundation.
Author: Merlise Clyde [aut, cre, cph] (<https://orcid.org/-5469>),
Michael Littman [ctb],
Quanli Wang [ctb],
Joyee Ghosh [ctb],
Yingbo Li [ctb]
Maintainer: Merlise Clyde <clyde@duke.edu>
Diff between BAS versions 1.4.9 dated 2018-03-25 and 1.5.0 dated 2018-05-06
BAS-1.4.9/BAS/R/ZS-lik.R |only BAS-1.5.0/BAS/DESCRIPTION | 10 BAS-1.5.0/BAS/MD5 | 108 ++--- BAS-1.5.0/BAS/NEWS.md | 28 + BAS-1.5.0/BAS/R/EB.global.R | 16 BAS-1.5.0/BAS/R/bas.R | 83 ++-- BAS-1.5.0/BAS/R/bas.gglm.R | 60 ++ BAS-1.5.0/BAS/R/betapriors.R | 10 BAS-1.5.0/BAS/R/confint.coef.R | 12 BAS-1.5.0/BAS/R/cv.summary.bas.R | 18 BAS-1.5.0/BAS/R/data.R | 62 +-- BAS-1.5.0/BAS/R/diagnostics.R | 22 - BAS-1.5.0/BAS/R/glm-fit.R | 4 BAS-1.5.0/BAS/R/hypergeometric1F1.R | 14 BAS-1.5.0/BAS/R/image.bas.R | 4 BAS-1.5.0/BAS/R/interactions.R | 2 BAS-1.5.0/BAS/R/modelpriors.R | 84 ++-- BAS-1.5.0/BAS/R/predict.bas.R | 67 +-- BAS-1.5.0/BAS/R/summary.bas.R | 6 BAS-1.5.0/BAS/build/vignette.rds |binary BAS-1.5.0/BAS/inst/CITATION | 23 - BAS-1.5.0/BAS/inst/doc/BAS-vignette.R | 27 + BAS-1.5.0/BAS/inst/doc/BAS-vignette.Rmd | 53 ++ BAS-1.5.0/BAS/inst/doc/BAS-vignette.html | 639 +++++++++++++++++++++---------- BAS-1.5.0/BAS/man/Bernoulli.Rd | 2 BAS-1.5.0/BAS/man/Bernoulli.heredity.Rd | 6 BAS-1.5.0/BAS/man/CCH.Rd | 4 BAS-1.5.0/BAS/man/EB.global.Rd | 2 BAS-1.5.0/BAS/man/Hald.Rd | 2 BAS-1.5.0/BAS/man/IC.prior.Rd | 2 BAS-1.5.0/BAS/man/Jeffreys.Rd | 2 BAS-1.5.0/BAS/man/bas.glm.Rd | 41 + BAS-1.5.0/BAS/man/bas.lm.Rd | 38 + BAS-1.5.0/BAS/man/bayesglm.fit.Rd | 4 BAS-1.5.0/BAS/man/bodyfat.Rd | 4 BAS-1.5.0/BAS/man/confint.coef.Rd | 8 BAS-1.5.0/BAS/man/confint.pred.Rd | 4 BAS-1.5.0/BAS/man/cv.summary.bas.Rd | 2 BAS-1.5.0/BAS/man/diagnostics.Rd | 12 BAS-1.5.0/BAS/man/figures |only BAS-1.5.0/BAS/man/fitted.Rd | 10 BAS-1.5.0/BAS/man/force.heredity.bas.Rd | 2 BAS-1.5.0/BAS/man/hypergeometric1F1.Rd | 2 BAS-1.5.0/BAS/man/predict.bas.Rd | 17 BAS-1.5.0/BAS/man/predict.basglm.Rd | 12 BAS-1.5.0/BAS/man/print.bas.Rd | 2 BAS-1.5.0/BAS/man/protein.Rd | 4 BAS-1.5.0/BAS/man/summary.Rd | 4 BAS-1.5.0/BAS/man/testBF.prior.Rd | 2 BAS-1.5.0/BAS/man/tr.beta.binomial.Rd | 4 BAS-1.5.0/BAS/man/tr.power.prior.Rd | 6 BAS-1.5.0/BAS/man/uniform.Rd | 2 BAS-1.5.0/BAS/src/bayesreg.c | 21 - BAS-1.5.0/BAS/src/deterministic.c | 3 BAS-1.5.0/BAS/src/tree-structures.c | 2 BAS-1.5.0/BAS/vignettes/BAS-vignette.Rmd | 53 ++ 56 files changed, 1064 insertions(+), 567 deletions(-)
Title: Regularized Wasserstein Distances and Barycenters
Description: Computations of entropy regularized Wasserstein Distances, a.k.a. dual-Sinkhorn divergences, and entropy regularized Wasserstein Barycenters. Relevant papers are Marco Cuturi (2013) <arXiv:1306.0895>, Marco Cuturi (2014) <arXiv:1310.4375> and Jason Altschuler et al. <arXiv:1705.09634>.
Author: Marcel Klatt
Maintainer: Marcel Klatt <marcel.klatt@stud.uni-goettingen.de>
Diff between Barycenter versions 1.3 dated 2018-03-05 and 1.3.1 dated 2018-05-06
DESCRIPTION | 12 ++++++------ MD5 | 12 ++++++------ R/Barycenter.R | 3 +-- man/Greenkhorn.Rd | 4 ++-- man/SinkhornDistance.Rd | 2 +- man/WaBarycenter.Rd | 9 ++++----- src/SinkhornDistance.cpp | 2 +- 7 files changed, 21 insertions(+), 23 deletions(-)
Title: Bayesian Additive Regression Trees
Description: An advanced implementation of Bayesian Additive Regression Trees with expanded features for data analysis and visualization.
Author: Adam Kapelner and Justin Bleich (R package)
Maintainer: Adam Kapelner <kapelner@qc.cuny.edu>
Diff between bartMachine versions 1.2.4.1 dated 2018-04-06 and 1.2.4.2 dated 2018-05-06
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- R/bart_package_plots.R | 6 +++--- R/zzz.R | 4 ++-- build/vignette.rds |binary inst/doc/bartMachine.pdf |binary 6 files changed, 14 insertions(+), 14 deletions(-)
Title: Allele Frequency Comparison
Description: When doing association analysis one does not always have the
genotypes for the control population. In such cases it may be
necessary to fall back on frequency based tests using well known sources
for the frequencies in the control population, for instance, from the
1000 Genomes Project. The Allele Frequency Comparison ('AssocAFC') package
performs multiple rare variant association analyses in both population and
family-based GWAS (Genome-Wide Association Study) designs. It includes
three score tests that are based on the difference of the sum of allele
frequencies between cases and controls. Two of these tests, Wcorrected()
and Wqls(), are collapsing-based tests and suffer from having protective
and risk variants. The third test, afcSKAT(), is a score test that
overcomes the mix of SNP (Single-Nucleotide Polymorphism) effect
directions. For more details see
Saad M and Wijsman EM (2017) <doi:10.1093/bib/bbx107>.
Author: Khalid B. Kunji [aut, cre],
Mohamad Saad [aut]
Maintainer: Khalid B. Kunji <kkunji@hbku.edu.qa>
Diff between AssocAFC versions 1.0.1 dated 2017-11-28 and 1.0.2 dated 2018-05-06
DESCRIPTION | 11 ++++++----- MD5 | 4 ++-- build/partial.rdb |binary 3 files changed, 8 insertions(+), 7 deletions(-)
Title: Core Methods and Classes Used by 'aroma.*' Packages Part of the
Aroma Framework
Description: Core methods and classes used by higher-level 'aroma.*' packages
part of the Aroma Project, e.g. 'aroma.affymetrix' and 'aroma.cn'.
Author: Henrik Bengtsson [aut, cre, cph],
Mark Robinson [ctb],
Ken Simpson [ctb]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between aroma.core versions 3.1.2 dated 2018-04-24 and 3.1.3 dated 2018-05-06
DESCRIPTION | 16 ++++++++-------- MD5 | 8 ++++---- NAMESPACE | 2 +- NEWS | 8 ++++++++ R/008.BioC.R | 6 +++--- 5 files changed, 24 insertions(+), 16 deletions(-)
Title: Antimicrobial Resistance Analysis
Description: Functions to simplify the analysis of Antimicrobial Resistance (AMR)
of microbial isolates, by using new S3 classes and applying EUCAST expert rules
on antibiograms according to Leclercq (2013)
<doi:10.1111/j.1469-0691.2011.03703.x>.
Author: Matthijs S. Berends [aut, cre]
(<https://orcid.org/0000-0001-7620-1800>),
Christian F. Luz [aut, ctb] (<https://orcid.org/0000-0001-5809-5995>),
Erwin E.A. Hassing [ctb]
Maintainer: Matthijs S. Berends <m.s.berends@umcg.nl>
Diff between AMR versions 0.1.1 dated 2018-03-14 and 0.2.0 dated 2018-05-06
AMR-0.1.1/AMR/NEWS |only AMR-0.1.1/AMR/R/EUCAST.R |only AMR-0.1.1/AMR/data/ablist.rda |only AMR-0.1.1/AMR/data/bactlist.rda |only AMR-0.1.1/AMR/data/bactlist.umcg.rda |only AMR-0.1.1/AMR/man/ablist.Rd |only AMR-0.1.1/AMR/man/bactlist.Rd |only AMR-0.1.1/AMR/man/bactlist.umcg.Rd |only AMR-0.1.1/AMR/man/figures/logo_en.png |only AMR-0.1.1/AMR/man/rsi_df.Rd |only AMR-0.2.0/AMR/DESCRIPTION | 26 AMR-0.2.0/AMR/LICENSE | 678 +++++++-------- AMR-0.2.0/AMR/MD5 | 96 +- AMR-0.2.0/AMR/NAMESPACE | 177 ++-- AMR-0.2.0/AMR/NEWS.md |only AMR-0.2.0/AMR/R/atc.R | 679 ++++++++++------ AMR-0.2.0/AMR/R/classes.R | 815 +++++++++---------- AMR-0.2.0/AMR/R/data.R | 423 +++++++-- AMR-0.2.0/AMR/R/eucast.R |only AMR-0.2.0/AMR/R/first_isolates.R | 1102 ++++++++++++++------------ AMR-0.2.0/AMR/R/freq.R |only AMR-0.2.0/AMR/R/globals.R | 86 +- AMR-0.2.0/AMR/R/join.R | 245 +++-- AMR-0.2.0/AMR/R/mdro.R |only AMR-0.2.0/AMR/R/misc.R | 165 ++- AMR-0.2.0/AMR/R/print.R |only AMR-0.2.0/AMR/R/rsi_analysis.R | 925 +++++++++++---------- AMR-0.2.0/AMR/R/zzz.R |only AMR-0.2.0/AMR/README.md | 498 +++++++---- AMR-0.2.0/AMR/data/antibiotics.rda |only AMR-0.2.0/AMR/data/microorganisms.rda |only AMR-0.2.0/AMR/data/microorganisms.umcg.rda |only AMR-0.2.0/AMR/man/EUCAST.Rd | 137 +-- AMR-0.2.0/AMR/man/MDRO.Rd |only AMR-0.2.0/AMR/man/abname.Rd | 90 +- AMR-0.2.0/AMR/man/antibiotics.Rd |only AMR-0.2.0/AMR/man/as.mic.Rd | 58 - AMR-0.2.0/AMR/man/as.rsi.Rd | 56 - AMR-0.2.0/AMR/man/atc_property.Rd | 114 +- AMR-0.2.0/AMR/man/figures/combi_therapy_2.png |only AMR-0.2.0/AMR/man/figures/combi_therapy_3.png |only AMR-0.2.0/AMR/man/figures/logo_certe.png |only AMR-0.2.0/AMR/man/figures/logo_eh1h.png |only AMR-0.2.0/AMR/man/figures/logo_interreg.png |only AMR-0.2.0/AMR/man/figures/logo_rug.png |only AMR-0.2.0/AMR/man/figures/mic_example.png |only AMR-0.2.0/AMR/man/figures/mono_therapy.png |only AMR-0.2.0/AMR/man/first_isolate.Rd | 227 ++--- AMR-0.2.0/AMR/man/freq.Rd |only AMR-0.2.0/AMR/man/guess_atc.Rd |only AMR-0.2.0/AMR/man/guess_bactid.Rd |only AMR-0.2.0/AMR/man/join.Rd | 106 +- AMR-0.2.0/AMR/man/key_antibiotics.Rd | 74 - AMR-0.2.0/AMR/man/like.Rd |only AMR-0.2.0/AMR/man/microorganisms.Rd |only AMR-0.2.0/AMR/man/microorganisms.umcg.Rd |only AMR-0.2.0/AMR/man/mo_property.Rd | 38 AMR-0.2.0/AMR/man/print.Rd |only AMR-0.2.0/AMR/man/rsi.Rd | 149 ++- AMR-0.2.0/AMR/man/rsi_predict.Rd | 157 +-- AMR-0.2.0/AMR/man/septic_patients.Rd | 98 +- AMR-0.2.0/AMR/tests |only 62 files changed, 4128 insertions(+), 3091 deletions(-)
Title: European Commission Annual Macro-Economic (AMECO) Database
Description: Annual macro-economic database provided by the European Commission.
Author: Eric Persson [aut, cre]
Maintainer: Eric Persson <expersso5@gmail.com>
Diff between ameco versions 0.2.8 dated 2017-11-13 and 0.2.9 dated 2018-05-06
ameco-0.2.8/ameco/tests |only ameco-0.2.9/ameco/DESCRIPTION | 8 ameco-0.2.9/ameco/MD5 | 24 -- ameco-0.2.9/ameco/NAMESPACE | 4 ameco-0.2.9/ameco/R/data.R | 43 +-- ameco-0.2.9/ameco/build/vignette.rds |binary ameco-0.2.9/ameco/data/ameco.RData |binary ameco-0.2.9/ameco/data/datalist | 2 ameco-0.2.9/ameco/inst/doc/ameco_dataset.R | 46 ++-- ameco-0.2.9/ameco/inst/doc/ameco_dataset.Rmd | 122 +++++----- ameco-0.2.9/ameco/inst/doc/ameco_dataset.html | 295 ++++++++++++-------------- ameco-0.2.9/ameco/man/ameco.Rd | 62 ++--- ameco-0.2.9/ameco/vignettes/ameco_dataset.Rmd | 122 +++++----- 13 files changed, 364 insertions(+), 364 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-01-13 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-06-28 1.4
2013-02-21 1.3.2
2013-02-20 1.3.1
2013-02-13 1.3
2012-07-12 1.2
2011-05-29 1.1.2
2011-05-11 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-09-04 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-08-08 1.1
2014-04-30 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-09-09 1.1
2014-04-11 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-03-12 2.0
2016-07-12 1.1
2015-10-12 1.0
2015-02-16 0.3
2015-01-08 0.2
2014-12-29 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-03-02 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-01-09 1.6-10
2012-11-16 1.6-9
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-02-12 1.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-04-28 1.1