Title: D-Vine Quantile Regression
Description: Implements D-vine quantile regression models with
parametric or nonparametric pair-copulas. See
Kraus and Czado (2017) <doi:10.1016/j.csda.2016.12.009> and
Schallhorn et al. (2017) <arXiv:1705.08310>.
Author: Thomas Nagler [aut, cre],
Dani Kraus [ctb]
Maintainer: Thomas Nagler <mail@tnagler.com>
Diff between vinereg versions 0.2.0 dated 2018-05-29 and 0.3.0 dated 2018-06-02
DESCRIPTION | 17 +- MD5 | 37 +++--- NAMESPACE | 16 +- NEWS.md | 16 ++ R/generics.R |only R/predict.vinereg.R | 139 ++++++++++++++-------- R/vinereg.R | 258 +++++++++++++++++++++++++----------------- README.md | 85 ++++++++++++- inst/doc/abalone-example.R | 56 +++------ inst/doc/abalone-example.Rmd | 64 ++++------ inst/doc/abalone-example.html | 113 ++++++------------ inst/doc/bike-rental.R | 2 inst/doc/bike-rental.Rmd | 2 inst/doc/bike-rental.html | 18 +- man/figures |only man/plot_effects.Rd |only man/predict.vinereg.Rd | 42 +++--- man/vinereg.Rd | 50 ++++---- tests/testthat/test-vinereg.R | 58 +++++++-- vignettes/abalone-example.Rmd | 64 ++++------ vignettes/bike-rental.Rmd | 2 21 files changed, 608 insertions(+), 431 deletions(-)
Title: Sustainable Transport Planning
Description: Functionality and data access tools for transport planning,
including origin-destination analysis, route allocation and modelling travel
patterns.
Author: Robin Lovelace [aut, cre] (<https://orcid.org/0000-0001-5679-6536>),
Richard Ellison [aut],
Barry Rowlingson [ctb] (Author of overline),
Nick Bearman [ctb] (Co-author of gclip),
Malcolm Morgan [ctb] (Co-author of angle_diff),
Nikolai Berkoff [ctb] (Co-author of line2route),
Scott Chamberlin [rev] (Scott reviewed the package for rOpenSci, see
https://github.com/ropensci/onboarding/issues/10)
Maintainer: Robin Lovelace <rob00x@gmail.com>
Diff between stplanr versions 0.2.4 dated 2018-05-19 and 0.2.5 dated 2018-06-02
DESCRIPTION | 11 +-- MD5 | 43 +++++++------- NAMESPACE | 2 NEWS.md | 10 +++ R/SpatialLinesNetwork.R | 4 - R/geo-functions.R | 5 - R/line_via.R |only R/od-funs.R | 6 +- inst/doc/introducing-stplanr.R | 42 +++++++++----- inst/doc/introducing-stplanr.Rmd | 59 ++++++++++++------- inst/doc/introducing-stplanr.html | 114 +++++++++++++++++--------------------- inst/doc/stplanr-paper.html | 4 - man/angle_diff.Rd | 2 man/geo_bb.Rd | 5 - man/is_linepoint.Rd | 2 man/line2df.Rd | 4 - man/line_bearing.Rd | 2 man/line_length.Rd | 2 man/line_midpoint.Rd | 2 man/line_segment.Rd | 2 man/line_via.Rd |only man/mats2line.Rd |only man/points2odf.Rd | 2 vignettes/introducing-stplanr.Rmd | 59 ++++++++++++------- 24 files changed, 215 insertions(+), 167 deletions(-)
Title: Class and Methods for Hyperspectral Data
Description: Input/Output, processing and visualization of spectra taken with different spectrometers, including SVC (Spectra Vista), ASD and PSR (Spectral Evolution). Implements an S3 class 'spectra' that other packages can build on. Provides methods to access, plot, manipulate, splice sensor overlap, vector normalize and smooth spectra.
Author: Jose Eduardo Meireles [aut, cre],
Anna K. Schweiger [aut],
Jeannine Cavender-Bares [aut]
Maintainer: Jose Eduardo Meireles <meireles@umn.edu>
Diff between spectrolab versions 0.0.4 dated 2017-12-13 and 0.0.5 dated 2018-06-02
DESCRIPTION | 8 MD5 | 45 ++-- NEWS.md | 11 + R/getters_and_setters.R | 1 R/read_spectra.R | 47 +++- R/stats_function_overloads.R | 16 + R/transform_spectra.R | 2 build/vignette.rds |binary inst/doc/advanced_spectrolab.html | 106 +++++---- inst/doc/introduction_to_spectrolab.R | 5 inst/doc/introduction_to_spectrolab.Rmd | 18 + inst/doc/introduction_to_spectrolab.html | 58 ++--- inst/doc/match_sensors.pdf |binary man/apply_by_band.Rd | 2 man/i_read_ascii_spectra.Rd | 13 - man/var.default.Rd | 109 +--------- tests/testthat/data_for_tests |only tests/testthat/test_i_is_index_function.R | 8 tests/testthat/test_parser_tag_identification.R |only vignettes/introduction_to_spectrolab.Rmd | 18 + vignettes/introduction_to_spectrolab_files/figure-html/unnamed-chunk-12-1.png |binary vignettes/introduction_to_spectrolab_files/figure-html/unnamed-chunk-13-1.png |only vignettes/introduction_to_spectrolab_files/figure-html/unnamed-chunk-14-1.png |binary vignettes/introduction_to_spectrolab_files/figure-html/unnamed-chunk-15-1.png |only 24 files changed, 236 insertions(+), 231 deletions(-)
Title: Implement Material Design in Shiny Applications
Description: Allows shiny developers to incorporate UI elements based on Google's Material design. See <https://material.io/guidelines/> for more information.
Author: Eric Anderson [aut, cre],
Alvin Wang [ctb, cph] (Materialize CSS library),
Alan Chang [ctb, cph] (Materialize CSS library),
Alex Mark [ctb, cph] (Materialize CSS library),
Kevin Louie [ctb, cph] (Materialize CSS library)
Maintainer: Eric Anderson <eric.ray.anderson@gmail.com>
Diff between shinymaterial versions 0.5.2 dated 2018-03-02 and 0.5.3 dated 2018-06-02
DESCRIPTION | 8 ++--- MD5 | 33 ++++++++++++++---------- NAMESPACE | 2 + R/open-shiny-material-modal.R |only R/shiny-material-column.R | 2 - R/shiny-material-modal.R | 20 ++++++++++---- R/shiny-material-page.R | 7 ++++- R/shiny-material-side-nav-tabs-info.R |only R/shiny-material-side-nav-tabs.R | 4 ++ inst/doc/shinymaterial.pdf |binary inst/js/shiny-material-dropdown.js | 15 ++++++++++- inst/js/shiny-material-file-input.js | 9 ++---- inst/js/shiny-material-side-nav-tabs.js | 26 +++++++++++++++++++ man/material_modal.Rd | 7 ++++- man/material_page.Rd | 4 ++ man/open_material_modal.Rd |only man/side_nav_tabs_info.Rd |only tests/app.R | 43 ++++++++++++++++++++++++++++---- tests/no_nav.R |only tests/renderUITest/app.R | 2 - 20 files changed, 141 insertions(+), 41 deletions(-)
Title: Visualization Methods for Raster Data
Description: Methods for enhanced visualization and interaction with raster data. It implements visualization methods for quantitative data and categorical data, both for univariate and multivariate rasters. It also provides methods to display spatiotemporal rasters, and vector fields. See the website for examples.
Author: Oscar Perpinan Lamigueiro [cre, aut]
(<https://orcid.org/0000-0002-4134-7196>),
Robert Hijmans [aut]
Maintainer: Oscar Perpinan Lamigueiro <oscar.perpinan@gmail.com>
Diff between rasterVis versions 0.44 dated 2018-04-05 and 0.45 dated 2018-06-02
DESCRIPTION | 7 +++---- MD5 | 5 +++-- build |only man/rasterVis-package.Rd | 47 ++++++++++++++++++++++++----------------------- 4 files changed, 30 insertions(+), 29 deletions(-)
Title: Make Static HTML Documentation for a Package
Description: Generate an attractive and useful website from a source package.
'pkgdown' convert your documentation, vignettes, 'README' and more to
'HTML' making it easy to share information about your package online.
Author: Hadley Wickham [aut, cre] (<https://orcid.org/0000-0003-4757-117X>),
Jay Hesselberth [aut] (<https://orcid.org/0000-0002-6299-179X>),
RStudio [cph, fnd]
Maintainer: Hadley Wickham <hadley@rstudio.com>
Diff between pkgdown versions 1.0.0 dated 2018-05-06 and 1.1.0 dated 2018-06-02
pkgdown-1.0.0/pkgdown/inst/assets/jquery.sticky-kit.min.js |only pkgdown-1.0.0/pkgdown/tests/testthat/autolink-out.html |only pkgdown-1.0.0/pkgdown/tests/testthat/autolink.Rmd |only pkgdown-1.0.0/pkgdown/tests/testthat/autolink.html |only pkgdown-1.0.0/pkgdown/tests/testthat/figure |only pkgdown-1.0.0/pkgdown/tests/testthat/home-empty-readme-md |only pkgdown-1.0.0/pkgdown/tests/testthat/home-index-rmd |only pkgdown-1.0.0/pkgdown/tests/testthat/home-links.html |only pkgdown-1.0.0/pkgdown/tests/testthat/home-page-header.html |only pkgdown-1.0.0/pkgdown/tests/testthat/home-readme-rmd |only pkgdown-1.0.0/pkgdown/tests/testthat/init-extra-1 |only pkgdown-1.0.0/pkgdown/tests/testthat/init-extra-2 |only pkgdown-1.0.0/pkgdown/tests/testthat/news |only pkgdown-1.0.0/pkgdown/tests/testthat/news-bad-nesting |only pkgdown-1.0.0/pkgdown/tests/testthat/news-github-links |only pkgdown-1.0.0/pkgdown/tests/testthat/open-graph |only pkgdown-1.0.0/pkgdown/tests/testthat/search-site |only pkgdown-1.0.0/pkgdown/tests/testthat/site-empty |only pkgdown-1.0.0/pkgdown/tests/testthat/site-orcid |only pkgdown-1.0.0/pkgdown/tests/testthat/test-as_html.R |only pkgdown-1.0.0/pkgdown/tests/testthat/test-href.R |only pkgdown-1.0.0/pkgdown/tests/testthat/test-html.R |only pkgdown-1.0.0/pkgdown/tests/testthat/test-open-graph.R |only pkgdown-1.0.0/pkgdown/tests/testthat/test-packages.R |only pkgdown-1.0.0/pkgdown/tests/testthat/test-remote.R |only pkgdown-1.0.0/pkgdown/tests/testthat/test-replay.R |only pkgdown-1.0.0/pkgdown/tests/testthat/test-rmarkdown.R |only pkgdown-1.0.0/pkgdown/tests/testthat/test-tweak.R |only pkgdown-1.0.0/pkgdown/tests/testthat/tutorials-inst |only pkgdown-1.0.0/pkgdown/tests/testthat/tutorials-vignettes |only pkgdown-1.0.0/pkgdown/tests/testthat/tweak-anchor.html |only pkgdown-1.0.0/pkgdown/tests/testthat/vignette-with-img.Rmd |only pkgdown-1.1.0/pkgdown/DESCRIPTION | 14 pkgdown-1.1.0/pkgdown/MD5 | 217 ++++---- pkgdown-1.1.0/pkgdown/NEWS.md | 77 +++ pkgdown-1.1.0/pkgdown/R/build-articles.R | 1 pkgdown-1.1.0/pkgdown/R/build-home-authors.R | 2 pkgdown-1.1.0/pkgdown/R/build-home-citation.R | 4 pkgdown-1.1.0/pkgdown/R/build-news.R | 4 pkgdown-1.1.0/pkgdown/R/build-reference-index.R | 5 pkgdown-1.1.0/pkgdown/R/build-reference.R | 10 pkgdown-1.1.0/pkgdown/R/build.r | 98 +++- pkgdown-1.1.0/pkgdown/R/html-tweak.R | 35 + pkgdown-1.1.0/pkgdown/R/link-article-index.R | 5 pkgdown-1.1.0/pkgdown/R/link-href.R | 5 pkgdown-1.1.0/pkgdown/R/link-topic-index.R | 2 pkgdown-1.1.0/pkgdown/R/markdown.R | 4 pkgdown-1.1.0/pkgdown/R/package.r | 6 pkgdown-1.1.0/pkgdown/R/rd-data.R | 4 pkgdown-1.1.0/pkgdown/R/rd-html.R | 47 + pkgdown-1.1.0/pkgdown/R/usage.R | 14 pkgdown-1.1.0/pkgdown/R/utils.r | 28 + pkgdown-1.1.0/pkgdown/README.md | 14 pkgdown-1.1.0/pkgdown/inst/assets/docsearch.css | 31 - pkgdown-1.1.0/pkgdown/inst/assets/docsearch.js |only pkgdown-1.1.0/pkgdown/inst/assets/pkgdown.css | 5 pkgdown-1.1.0/pkgdown/inst/assets/pkgdown.js | 244 +++------- pkgdown-1.1.0/pkgdown/inst/doc/pkgdown.Rmd | 13 pkgdown-1.1.0/pkgdown/inst/doc/pkgdown.html | 10 pkgdown-1.1.0/pkgdown/inst/rstudio/addins.dcf | 2 pkgdown-1.1.0/pkgdown/inst/templates/content-news-index.html | 6 pkgdown-1.1.0/pkgdown/inst/templates/content-reference-index.html | 5 pkgdown-1.1.0/pkgdown/inst/templates/head.html | 12 pkgdown-1.1.0/pkgdown/inst/templates/navbar.html | 2 pkgdown-1.1.0/pkgdown/man/build_reference.Rd | 11 pkgdown-1.1.0/pkgdown/man/build_site.Rd | 20 pkgdown-1.1.0/pkgdown/tests/testthat/assets |only pkgdown-1.1.0/pkgdown/tests/testthat/test-autolink_html.R | 6 pkgdown-1.1.0/pkgdown/tests/testthat/test-build-citation-authors.R | 18 pkgdown-1.1.0/pkgdown/tests/testthat/test-build-news.R | 31 + pkgdown-1.1.0/pkgdown/tests/testthat/test-build-search-docs.R | 3 pkgdown-1.1.0/pkgdown/tests/testthat/test-build.r |only pkgdown-1.1.0/pkgdown/tests/testthat/test-build_article.R |only pkgdown-1.1.0/pkgdown/tests/testthat/test-build_home.R | 46 + pkgdown-1.1.0/pkgdown/tests/testthat/test-build_site.R | 4 pkgdown-1.1.0/pkgdown/tests/testthat/test-figure.R | 4 pkgdown-1.1.0/pkgdown/tests/testthat/test-highlight.R | 2 pkgdown-1.1.0/pkgdown/tests/testthat/test-html-tweak.R |only pkgdown-1.1.0/pkgdown/tests/testthat/test-init.R | 5 pkgdown-1.1.0/pkgdown/tests/testthat/test-link-href.R |only pkgdown-1.1.0/pkgdown/tests/testthat/test-link-packages.R |only pkgdown-1.1.0/pkgdown/tests/testthat/test-metadata.R |only pkgdown-1.1.0/pkgdown/tests/testthat/test-rd-html.R |only pkgdown-1.1.0/pkgdown/tests/testthat/test-replay-html.R |only pkgdown-1.1.0/pkgdown/tests/testthat/test-template-content.R |only pkgdown-1.1.0/pkgdown/tests/testthat/test-topics.R | 2 pkgdown-1.1.0/pkgdown/tests/testthat/test-tutorials.R | 18 pkgdown-1.1.0/pkgdown/tests/testthat/test-usage.R | 6 pkgdown-1.1.0/pkgdown/tests/testthat/test-utils.R |only pkgdown-1.1.0/pkgdown/vignettes/pkgdown.Rmd | 13 pkgdown-1.1.0/pkgdown/vignettes/test/widget.Rmd |only 91 files changed, 719 insertions(+), 396 deletions(-)
Title: Paired Data Analysis
Description: Many datasets and a set of graphics (based on ggplot2), statistics, effect sizes and hypothesis tests are provided for analysing paired data with S4 class.
Author: Stephane Champely <champely@univ-lyon1.fr>
Maintainer: Stephane Champely <champely@univ-lyon1.fr>
Diff between PairedData versions 1.1.0 dated 2017-12-21 and 1.1.1 dated 2018-06-02
DESCRIPTION | 8 ++++---- MD5 | 5 +++-- build |only man/PairedData-package.Rd | 30 ++++++++++-------------------- 4 files changed, 17 insertions(+), 26 deletions(-)
Title: Easy Handling Discrete Time Markov Chains
Description: Functions and S4 methods to create and manage discrete time Markov
chains more easily. In addition functions to perform statistical (fitting
and drawing random variates) and probabilistic (analysis of their structural
proprieties) analysis are provided.
Author: Giorgio Alfredo Spedicato [aut,cre], Tae Seung Kang [aut], Sai Bhargav
Yalamanchi [aut], Mildenberger Thoralf [ctb], Deepak Yadav [ctb], Nacho Cordón
Castillo [ctb], Vandit Jain [ctb]
Maintainer: Giorgio Alfredo Spedicato <spedicato_giorgio@yahoo.it>
Diff between markovchain versions 0.6.9.8-1 dated 2017-08-16 and 0.6.9.10 dated 2018-06-02
markovchain-0.6.9.10/markovchain/ChangeLog | 4 markovchain-0.6.9.10/markovchain/DESCRIPTION | 8 - markovchain-0.6.9.10/markovchain/MD5 | 58 +++++----- markovchain-0.6.9.10/markovchain/NAMESPACE | 2 markovchain-0.6.9.10/markovchain/NEWS | 7 - markovchain-0.6.9.10/markovchain/R/1_ctmcProbabilisticSAI.R | 3 markovchain-0.6.9.10/markovchain/R/2_probabilistic.R | 6 - markovchain-0.6.9.10/markovchain/R/5_statisticalTests.R | 4 markovchain-0.6.9.10/markovchain/R/RcppExports.R | 13 +- markovchain-0.6.9.10/markovchain/build/vignette.rds |binary markovchain-0.6.9.10/markovchain/inst/doc/GSoC-2017_additions.Rmd | 6 - markovchain-0.6.9.10/markovchain/inst/doc/GSoC-2017_additions.pdf |binary markovchain-0.6.9.10/markovchain/inst/doc/an_introduction_to_markovchain_package.Rnw | 6 - markovchain-0.6.9.10/markovchain/inst/doc/an_introduction_to_markovchain_package.pdf |binary markovchain-0.6.9.10/markovchain/inst/doc/complicateSteadyStates.pdf |binary markovchain-0.6.9.10/markovchain/inst/doc/higher_order_markov_chains.Rnw | 16 ++ markovchain-0.6.9.10/markovchain/inst/doc/higher_order_markov_chains.pdf |binary markovchain-0.6.9.10/markovchain/inst/doc/markovchainCrashIntro.pdf |binary markovchain-0.6.9.10/markovchain/man/expectedRewardsBeforeHittingA.Rd |only markovchain-0.6.9.10/markovchain/man/freq2Generator.Rd | 4 markovchain-0.6.9.10/markovchain/man/markovchain-package.Rd | 6 - markovchain-0.6.9.10/markovchain/man/markovchainFit.Rd | 9 + markovchain-0.6.9.10/markovchain/src/1_functions4Fitting.cpp | 15 ++ markovchain-0.6.9.10/markovchain/src/2_probabilistic.cpp | 53 ++++----- markovchain-0.6.9.10/markovchain/src/RcppExports.cpp | 10 - markovchain-0.6.9.10/markovchain/src/mapFitFunctionsSAI.h | 46 +++++-- markovchain-0.6.9.10/markovchain/vignettes/GSoC-2017_additions.Rmd | 6 - markovchain-0.6.9.10/markovchain/vignettes/an_introduction_to_markovchain_package.Rnw | 6 - markovchain-0.6.9.10/markovchain/vignettes/higher_order_markov_chains.Rnw | 16 ++ markovchain-0.6.9.10/markovchain/vignettes/markovchainBiblio.bib | 8 + markovchain-0.6.9.8-1/markovchain/man/expectedRewardsforA.Rd |only 31 files changed, 200 insertions(+), 112 deletions(-)
Title: The Moving Epidemic Method Web Application
Description: The Moving Epidemic Method, created by T Vega and JE Lozano (2012, 2015) <doi:10.1111/j.1750-2659.2012.00422.x>, <doi:10.1111/irv.12330>, allows the weekly assessment of the epidemic and intensity status to help in routine respiratory infections surveillance in health systems. Allows the comparison of different epidemic indicators, timing and shape with past epidemics and across different regions or countries with different surveillance systems. Also, it gives a measure of the performance of the method in terms of sensitivity and specificity of the alert week. 'memapp' is a web application created in the Shiny framework for the 'mem' R package.
Author: Jose E. Lozano [aut, cre]
Maintainer: Jose E. Lozano <lozalojo@gmail.com>
Diff between memapp versions 2.9 dated 2018-03-12 and 2.10 dated 2018-06-02
DESCRIPTION | 15 MD5 | 21 R/memapp.R |only README.md | 61 + inst/shinyapp/helpers.R | 661 +++++++++++++--- inst/shinyapp/lang/en_GB.txt | 40 inst/shinyapp/lang/es_ES.txt | 40 inst/shinyapp/lang/fr_FR.txt |only inst/shinyapp/lang/ru_RU.txt | 2 inst/shinyapp/lang/translation.bin |binary inst/shinyapp/server.R | 1501 ++++++++++++++++++++++++++++--------- inst/shinyapp/ui.R | 8 man/memapp-package.Rd |only 13 files changed, 1829 insertions(+), 520 deletions(-)
Title: Easily Create and Style Tables for LaTeX, HTML and Other Formats
Description: Like 'xtable', creates styled tables. Export to HTML, LaTeX, 'Word',
'Excel', 'PowerPoint' and other formats. Simple, modern interface to manipulate
borders, size, position, captions, colours, text styles and number formatting.
Table cells can span multiple rows and/or columns.
Includes a 'huxreg' function for creation of regression tables, and 'quick_*'
one-liners to print data to a new document.
Author: David Hugh-Jones [aut, cre]
Maintainer: David Hugh-Jones <davidhughjones@gmail.com>
Diff between huxtable versions 3.0.0 dated 2018-02-23 and 4.0.0 dated 2018-06-02
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Title: Group Sequential Enrichment Design
Description: Provides function to apply "Group sequential enrichment design incorporating subgroup selection" (GSED) method proposed by Magnusson and Turnbull (2013) <doi:10.1002/sim.5738>.
Author: Marie-Karelle Riviere
Maintainer: Marie-Karelle Riviere <eldamjh@gmail.com>
Diff between GSED versions 1.6 dated 2018-03-05 and 1.7 dated 2018-06-02
DESCRIPTION | 10 +++++----- MD5 | 8 ++++---- NAMESPACE | 1 - R/GSED.R | 24 +++++++++++++----------- man/GSED-package.Rd | 4 ++-- 5 files changed, 24 insertions(+), 23 deletions(-)
Title: Generalized Joint Attribute Modeling
Description: Analyzes joint attribute data (e.g., species abundance) that are combinations of continuous and discrete data with Gibbs sampling. Full model and computation details are described in Clark et al. (2018) <doi:10.1002/ecm.1241>.
Author: James S. Clark, Daniel Taylor-Rodriquez
Maintainer: James S. Clark <jimclark@duke.edu>
Diff between gjam versions 2.2.3 dated 2018-05-30 and 2.2.4 dated 2018-06-02
DESCRIPTION | 10 +++--- MD5 | 14 ++++----- R/gjamHfunctions.R | 66 +++++++++++++++++++++++++-------------------- inst/doc/gjamVignette.Rmd | 8 +++-- inst/doc/gjamVignette.html | 39 +++++++++++++------------- man/gjam-package.Rd | 4 +- man/gjam.Rd | 4 ++ vignettes/gjamVignette.Rmd | 8 +++-- 8 files changed, 85 insertions(+), 68 deletions(-)
Title: Download Data from the European Social Survey on the Fly
Description: Download data from the European Social Survey directly from their website <http://www.europeansocialsurvey.org/>. There are two families of functions that allow you to download and interactively check all countries and rounds available.
Author: Jorge Cimentada [aut, cre],
Thomas Leeper [rev] (Thomas reviewed the package for rOpensci,see
https://github.com/ropensci/onboarding/issues/201),
Nujcharee Haswell [rev] (Nujcharee reviewed the package for rOpensci,
see https://github.com/ropensci/onboarding/issues/201)
Maintainer: Jorge Cimentada <cimentadaj@gmail.com>
Diff between essurvey versions 1.0.0 dated 2018-04-06 and 1.0.1 dated 2018-06-02
essurvey-1.0.0/essurvey/R/ess_all_cntrounds.R |only essurvey-1.0.0/essurvey/R/ess_all_rounds.R |only essurvey-1.0.0/essurvey/R/ess_country.R |only essurvey-1.0.0/essurvey/R/ess_rounds.R |only essurvey-1.0.0/essurvey/man/ess_all_cntrounds.Rd |only essurvey-1.0.0/essurvey/man/ess_all_rounds.Rd |only essurvey-1.0.0/essurvey/man/ess_country.Rd |only essurvey-1.0.0/essurvey/man/ess_rounds.Rd |only essurvey-1.0.1/essurvey/DESCRIPTION | 6 essurvey-1.0.1/essurvey/MD5 | 30 - essurvey-1.0.1/essurvey/NAMESPACE | 4 essurvey-1.0.1/essurvey/NEWS.md | 8 essurvey-1.0.1/essurvey/R/recode_missings.R | 284 ++++++++-------- essurvey-1.0.1/essurvey/README.md | 7 essurvey-1.0.1/essurvey/inst/doc/intro_ess.R | 2 essurvey-1.0.1/essurvey/inst/doc/intro_ess.Rmd | 4 essurvey-1.0.1/essurvey/inst/doc/intro_ess.html | 349 ++++++++++++++++---- essurvey-1.0.1/essurvey/man/recode_missings.Rd | 2 essurvey-1.0.1/essurvey/tests/testthat/test-show_.R | 280 +++++++--------- essurvey-1.0.1/essurvey/vignettes/intro_ess.Rmd | 4 20 files changed, 590 insertions(+), 390 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-11-30 0.2.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-01-29 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-03-22 1.1-2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-02-08 2.0
2013-04-17 1.0
Title: Seasonal Analysis and Graphics, Especially for Climatology
Description: Capable of deriving seasonal statistics, such as "normals", and
analysis of seasonal data, such as departures. This package also has
graphics capabilities for representing seasonal data, including boxplots for
seasonal parameters, and bars for summed normals. There are many specific
functions related to climatology, including precipitation normals,
temperature normals, cumulative precipitation departures and precipitation
interarrivals. However, this package is designed to represent any
time-varying parameter with a discernible seasonal signal, such as found
in hydrology and ecology.
Author: Mike Toews [aut, cre]
Maintainer: Mike Toews <mwtoews@gmail.com>
Diff between seas versions 0.4-3 dated 2014-02-26 and 0.5-2 dated 2018-06-02
DESCRIPTION | 21 +-- MD5 | 49 +++---- NAMESPACE | 9 + R/dathomog.R | 3 R/read.msc.R | 236 +++++++++++++++++++++------------ R/sysdata.rda |binary build |only data/mscdata.rda |binary inst/ChangeLog | 349 +++++++++++++++++++++++++------------------------- man/A1128551.DLY.Rd | 11 - man/interarrival.Rd | 2 man/lars.Rd | 6 man/mkann.Rd | 2 man/mkseas.Rd | 2 man/mscdata.Rd | 8 - man/mscstn.Rd | 3 man/precip.dep.Rd | 3 man/read.msc.Rd | 17 +- man/sdsm.Rd | 16 +- man/seas-package.Rd | 12 - man/seas.temp.plot.Rd | 10 - man/seas.var.plot.Rd | 6 man/write.help.Rd | 18 +- man/year.length.Rd | 2 po/fr/DESCRIPTION | 8 - src/help.c | 18 ++ 26 files changed, 456 insertions(+), 355 deletions(-)
Title: Nonparametric Methods for Generating High Quality Comparative
Effectiveness Evidence
Description: Implements novel nonparametric approaches to address
biases and confounding when comparing treatments or exposures in
observational studies of outcomes. While designed and appropriate for use
in studies involving medicine and the life sciences, the package can be
used in other situations involving outcomes with multiple confounders.
The package implements a family of methods for nonparametric bias
correction when comparing treatments in cross-sectional, case-control,
and survival analysis settings, including competing risks with censoring.
The approach extends to bias-corrected personalized predictions of
treatment outcome differences, and analysis of heterogeneity of treatment
effect-sizes across patient subgroups.
Author: Nicolas R. Lauve [aut],
Stuart J. Nelson [aut],
S. Stanley Young [aut],
Robert L. Obenchain [aut],
Melania Pintilie [ctb],
Martin Kutz [ctb],
Christophe G. Lambert [aut, cre]
Maintainer: Christophe G. Lambert <cglambert@unm.edu>
Diff between LocalControl versions 1.1.0 dated 2017-11-22 and 1.1.1 dated 2018-06-02
DESCRIPTION | 11 MD5 | 45 NEWS.md | 9 R/clusteringLC.R | 5112 +++++++++++++------------- R/dataDesc.R | 140 R/localControl.R | 1854 ++++----- README.md | 2 build |only inst |only man/LocalControl.Rd | 2 man/LocalControlNearestNeighborsConfidence.Rd | 2 src/LocalControl.cpp | 15 vignettes |only 13 files changed, 3618 insertions(+), 3574 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-05-06 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-01-27 1.1-4
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-02-17 1.5
2015-11-18 1.4
2015-11-09 1.3-2
2015-11-07 1.3
2015-10-20 1.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-01-15 1.1
2011-02-20 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-05-31 0.1.1
2016-05-18 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-04-03 0.1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-08-30 0.41
2014-03-15 0.40
2013-11-05 0.20
2013-03-24 0.11
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-02-09 0.8.6
2016-05-11 0.8.5
2016-01-13 0.8.4
2015-10-19 0.8.3
2015-10-13 0.8
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-01-10 1.3.6
2016-10-25 1.3.5-2
2016-10-06 1.3.4-6
2016-07-11 1.3.4-1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-07-11 1.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-10-02 0.99.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-09-11 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-03-06 0.2.4
2018-01-17 0.2.3
2017-08-08 0.2.2
2017-07-19 0.2.1
2017-06-02 0.2.0
2017-04-27 0.1.1
2017-03-16 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-06-01 0.1.1
2014-06-01 0.1.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-03-29 0.5
2016-11-26 0.4
2016-05-17 0.3
2015-11-18 0.2
2015-10-23 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-03-12 0.5
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-12-03 1.3
2013-07-15 1.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-11-29 0.2
2014-06-23 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-09-06 0.2.1
2017-03-27 0.2
2016-07-03 0.1.4
2015-06-19 0.1.3
2015-03-12 0.1.2
2015-03-11 0.1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-10-26 0.37.0
2016-02-02 0.36.6
Title: Infrastructure for Data Stream Mining
Description: A framework for data stream modeling and associated data mining tasks such as clustering and classification. The development of this package was supported in part by NSF IIS-0948893 and NIH R21HG005912.
Author: Michael Hahsler [aut, cre, cph],
Matthew Bolanos [aut, cph],
John Forrest [aut, cph],
Matthias Carnein [ctb],
Dennis Assenmacher [ctb]
Maintainer: Michael Hahsler <mhahsler@lyle.smu.edu>
Diff between stream versions 1.2-4 dated 2017-02-26 and 1.3-0 dated 2018-06-02
DESCRIPTION | 24 ++- MD5 | 106 ++++++++++++-- NAMESPACE | 5 NEWS.md | 12 + R/DSC_BICO.R |only R/DSC_BIRCH.R |only R/DSC_DStream.R | 286 ++++++++++++++++++++-------------------- R/DSD_Memory.R | 57 ++++--- R/DSD_ReadCSV.R | 123 ++++++++--------- R/RcppExports.R | 2 R/animation.R | 96 ++++++------- R/evaluate.R | 198 ++++++++++++++------------- R/zzz.R | 4 README.md | 16 +- build/vignette.rds |binary inst/CITATION | 3 inst/doc/stream.pdf |binary inst/doc/stream_extension.pdf |binary man/DSC_BICO.Rd |only man/DSC_BIRCH.Rd |only man/animation.Rd | 32 ++-- man/evaluate.Rd | 2 src/BICO |only src/BICO.cpp |only src/BIRCH |only src/BIRCH.cpp |only src/Makevars |only src/RcppExports.cpp | 21 ++ tests/testthat/test-DSC.R | 2 tests/testthat/test-DSC_BICO.R |only tests/testthat/test-DSC_BIRCH.R |only 31 files changed, 564 insertions(+), 425 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-05-16 2.0-12
2013-04-13 2.0-11
2013-04-02 2.0-5
2013-03-12 2.0-4
2012-12-13 2.0-1
2011-02-12 1.5
2010-11-30 1.4
2010-08-15 1.3
2009-10-13 1.2
2008-01-08 1.1
2007-11-23 1.0
Title: Evaluation of Surrogate Endpoints in Clinical Trials
Description: In a clinical trial, it frequently occurs that the most credible outcome to evaluate the effectiveness of a new therapy (the true endpoint) is difficult to measure. In such a situation, it can be an effective strategy to replace the true endpoint by a (bio)marker that is easier to measure and that allows for a prediction of the treatment effect on the true endpoint (a surrogate endpoint). The package 'Surrogate' allows for an evaluation of the appropriateness of a candidate surrogate endpoint based on the meta-analytic, information-theoretic, and causal-inference frameworks. Part of this software has been developed using funding provided from the European Union's Seventh Framework Programme for research, technological development and demonstration under Grant Agreement no 602552.
Author: Wim Van der Elst, Paul Meyvisch, Ariel Alonso, Hannah M. Ensor, Christopher J. Weir & Geert Molenberghs
Maintainer: Wim Van der Elst <Wim.vanderelst@gmail.com>
Diff between Surrogate versions 0.7 dated 2018-04-20 and 0.8 dated 2018-06-02
DESCRIPTION | 7 +++---- MD5 | 8 ++++---- R/CausalDiagramBinBin.R | 5 ++++- R/Fano.BinBin.R | 11 +---------- man/Fano.BinBin.Rd | 2 -- 5 files changed, 12 insertions(+), 21 deletions(-)
Title: Methods and Data for Spatial Epidemiology
Description: Methods and data for cluster detection and disease mapping.
Author: Cici Chen [ctb],
Albert Y. Kim [aut, cre],
Michelle Ross [ctb],
Jon Wakefield [aut]
Maintainer: Albert Y. Kim <albert@stat.washington.edu>
Diff between SpatialEpi versions 1.2.2 dated 2016-01-28 and 1.2.3 dated 2018-06-02
SpatialEpi-1.2.2/SpatialEpi/README.md |only SpatialEpi-1.2.3/SpatialEpi/DESCRIPTION | 23 +- SpatialEpi-1.2.3/SpatialEpi/MD5 | 18 + SpatialEpi-1.2.3/SpatialEpi/NEWS.md |only SpatialEpi-1.2.3/SpatialEpi/R/RcppExports.R | 36 +-- SpatialEpi-1.2.3/SpatialEpi/build |only SpatialEpi-1.2.3/SpatialEpi/inst |only SpatialEpi-1.2.3/SpatialEpi/man/SpatialEpi-package.Rd | 28 -- SpatialEpi-1.2.3/SpatialEpi/src/RcppExports.cpp | 198 ++++++++++-------- 9 files changed, 166 insertions(+), 137 deletions(-)
Title: Automatic Forecasting Procedure
Description: Implements a procedure for forecasting time series data based on
an additive model where non-linear trends are fit with yearly, weekly, and
daily seasonality, plus holiday effects. It works best with time series
that have strong seasonal effects and several seasons of historical data.
Prophet is robust to missing data and shifts in the trend, and typically
handles outliers well.
Author: Sean Taylor [cre, aut],
Ben Letham [aut]
Maintainer: Sean Taylor <sjt@fb.com>
Diff between prophet versions 0.2.1 dated 2017-11-08 and 0.3 dated 2018-06-02
prophet-0.2.1/prophet/inst/stan/prophet_linear_growth.RData |only prophet-0.2.1/prophet/inst/stan/prophet_linear_growth.stan |only prophet-0.2.1/prophet/inst/stan/prophet_logistic_growth.stan |only prophet-0.2.1/prophet/man/get_changepoint_matrix.Rd |only prophet-0.2.1/prophet/man/simulated_historical_forecasts.Rd |only prophet-0.3/prophet/DESCRIPTION | 22 prophet-0.3/prophet/MD5 | 83 - prophet-0.3/prophet/NAMESPACE | 5 prophet-0.3/prophet/R/diagnostics.R | 306 +++- prophet-0.3/prophet/R/plot.R |only prophet-0.3/prophet/R/prophet.R | 821 +++-------- prophet-0.3/prophet/R/zzz.R | 11 prophet-0.3/prophet/inst/doc/quick_start.Rmd | 3 prophet-0.3/prophet/inst/doc/quick_start.html | 82 - prophet-0.3/prophet/inst/stan/prophet.stan |only prophet-0.3/prophet/man/add_changepoints_to_plot.Rd |only prophet-0.3/prophet/man/add_regressor.Rd | 10 prophet-0.3/prophet/man/add_seasonality.Rd | 12 prophet-0.3/prophet/man/compile_stan_model.Rd | 2 prophet-0.3/prophet/man/coverage.Rd |only prophet-0.3/prophet/man/cross_validation.Rd | 5 prophet-0.3/prophet/man/df_for_plotting.Rd | 2 prophet-0.3/prophet/man/dyplot.prophet.Rd |only prophet-0.3/prophet/man/generate_cutoffs.Rd | 10 prophet-0.3/prophet/man/get_prophet_stan_model.Rd | 2 prophet-0.3/prophet/man/mae.Rd |only prophet-0.3/prophet/man/make_all_seasonality_features.Rd | 4 prophet-0.3/prophet/man/make_holiday_features.Rd | 1 prophet-0.3/prophet/man/mape.Rd |only prophet-0.3/prophet/man/mse.Rd |only prophet-0.3/prophet/man/performance_metrics.Rd |only prophet-0.3/prophet/man/plot.prophet.Rd | 2 prophet-0.3/prophet/man/plot_cross_validation_metric.Rd |only prophet-0.3/prophet/man/plot_forecast_component.Rd | 6 prophet-0.3/prophet/man/plot_seasonality.Rd | 2 prophet-0.3/prophet/man/plot_weekly.Rd | 2 prophet-0.3/prophet/man/plot_yearly.Rd | 2 prophet-0.3/prophet/man/predictive_samples.Rd | 5 prophet-0.3/prophet/man/prophet.Rd | 15 prophet-0.3/prophet/man/prophet_copy.Rd | 2 prophet-0.3/prophet/man/prophet_plot_components.Rd | 17 prophet-0.3/prophet/man/regressor_column_matrix.Rd |only prophet-0.3/prophet/man/rmse.Rd |only prophet-0.3/prophet/man/rolling_mean.Rd |only prophet-0.3/prophet/man/sample_model.Rd | 8 prophet-0.3/prophet/man/sample_posterior_predictive.Rd | 3 prophet-0.3/prophet/man/seasonality_plot_df.Rd | 2 prophet-0.3/prophet/src/install.libs.R | 27 prophet-0.3/prophet/tests/testthat/test_diagnostics.R | 202 +- prophet-0.3/prophet/tests/testthat/test_prophet.R | 244 +-- prophet-0.3/prophet/tests/testthat/test_stan_functions.R |only prophet-0.3/prophet/vignettes/quick_start.Rmd | 3 52 files changed, 1024 insertions(+), 899 deletions(-)
Title: Routines for Logspline Density Estimation
Description: Contains routines for logspline density estimation.
The function oldlogspline() uses the same algorithm as the logspline package
version 1.0.x; i.e. the Kooperberg and Stone (1992) <DOI:10.2307/1390786>
algorithm (with an improved interface). The recommended routine logspline()
uses an algorithm from Stone et al (1997) <DOI:10.1214/aos/1031594728>.
Author: Charles Kooperberg <clk@fredhutch.org>
Maintainer: Charles Kooperberg <clk@fredhutch.org>
Diff between logspline versions 2.1.9 dated 2016-02-02 and 2.1.10 dated 2018-06-02
logspline-2.1.10/logspline/DESCRIPTION | 20 +++++----- logspline-2.1.10/logspline/MD5 | 13 +++--- logspline-2.1.10/logspline/NAMESPACE | 2 - logspline-2.1.10/logspline/R/logspline.R | 4 +- logspline-2.1.10/logspline/man/logspline-internal.Rd |only logspline-2.1.10/logspline/src/lsdall.c | 34 ++++++++--------- logspline-2.1.10/logspline/src/nlsd.c | 21 +++++++--- logspline-2.1.10/logspline/src/registerDynamicSymbol.c |only logspline-2.1.9/logspline/INDEX |only 9 files changed, 51 insertions(+), 43 deletions(-)
Title: Fast Estimators for Design-Based Inference
Description: Fast procedures for small set of commonly-used, design-appropriate estimators with robust standard errors and confidence intervals. Includes estimators for linear regression, instrumental variables regression, difference-in-means, Horvitz-Thompson estimation, and regression improving precision of experimental estimates by interacting treatment with centered pre-treatment covariates introduced by Lin (2013) <doi:10.1214/12-AOAS583>.
Author: Graeme Blair [aut, cre],
Jasper Cooper [aut],
Alexander Coppock [aut],
Macartan Humphreys [aut],
Luke Sonnet [aut],
Neal Fultz [ctb]
Maintainer: Graeme Blair <graeme.blair@ucla.edu>
Diff between estimatr versions 0.6.0 dated 2018-03-28 and 0.8.0 dated 2018-06-02
DESCRIPTION | 19 MD5 | 100 ++-- NAMESPACE | 11 NEWS.md | 8 R/RcppExports.R | 12 R/S3_predict.R | 110 +++- R/S3_print.R | 40 + R/S3_summary.R | 9 R/S3_tidy.R | 10 R/S3_vcov.R | 54 +- R/estimatr.R | 3 R/estimatr_difference_in_means.R | 16 R/estimatr_horvitz_thompson.R | 52 +- R/estimatr_iv_robust.R | 61 ++ R/estimatr_lm_lin.R | 11 R/estimatr_lm_robust.R | 53 ++ R/helper_clean_model_data.R | 72 ++- R/helper_condition_pr_matrix.R | 38 - R/helper_extract.R | 20 R/helper_lm_robust_fit.R | 690 ++++++++++++++++++++---------- R/helper_return.R | 46 +- R/helper_starprep.R |only R/zzz.R | 4 man/commarobust.Rd |only man/declaration_to_condition_pr_mat.Rd | 7 man/difference_in_means.Rd | 4 man/extract.lm_robust.Rd | 18 man/horvitz_thompson.Rd | 2 man/iv_robust.Rd | 39 + man/lm_lin.Rd | 5 man/lm_robust.Rd | 38 + man/lm_robust_fit.Rd | 17 man/predict.lm_robust.Rd | 4 man/starprep.Rd |only src/RcppExports.cpp | 51 +- src/lm_robust_helper.cpp | 656 ++++++++++++++-------------- tests/testthat/run-stata-areg-models.do |only tests/testthat/run-stata-iv-models.do | 18 tests/testthat/stata-ests.txt | 20 tests/testthat/stata-fe-ests.txt |only tests/testthat/stata-iv-ests.txt | 12 tests/testthat/test-condition-pr-matrix.R | 118 +++-- tests/testthat/test-difference-in-means.R | 24 - tests/testthat/test-horvitz-thompson.R | 75 ++- tests/testthat/test-iv-robust-fes.R |only tests/testthat/test-iv-robust.R | 164 +++++-- tests/testthat/test-lm-cluster.R | 3 tests/testthat/test-lm-robust-fes.R |only tests/testthat/test-lm-robust.R | 306 ++++++++++++- tests/testthat/test-lm-robust_margins.R | 25 - tests/testthat/test-replicate-lin2013.R | 1 tests/testthat/test-s3-methods.R | 476 +++++++++++++++++++- tests/testthat/test-starprep.R |only tests/testthat/test-stata-output.R | 70 ++- tests/testthat/test-zzz.R | 1 55 files changed, 2563 insertions(+), 1030 deletions(-)