Title: Data from the 2010 Tourism Forecasting Competition
Description: The 1311 time series from the tourism forecasting competition conducted in 2010 and described in Athanasopoulos et al. (2011) <DOI:10.1016/j.ijforecast.2010.04.009>.
Author: Peter Ellis [aut, cre]
Maintainer: Peter Ellis <peter.ellis2013nz@gmail.com>
Diff between Tcomp versions 1.0.0 dated 2016-10-16 and 1.0.1 dated 2018-06-05
DESCRIPTION | 8 +- MD5 | 16 ++--- build/vignette.rds |binary data/tourism.rda |binary inst/doc/tourism-comp.html | 102 +++++++++++++++++------------------ man/Tcomp_reproduction.Rd | 1 man/forecast_comp.Rd | 1 man/tourism.Rd | 1 tests/testthat/test-series-lengths.R | 5 + 9 files changed, 68 insertions(+), 66 deletions(-)
Title: Estimating Time-Varying k-Order Mixed Graphical Models
Description: Estimation of k-Order time-varying Mixed Graphical Models and mixed VAR(p) models via elastic-net regularized neighborhood regression. For details see linked paper.
Author: Jonas Haslbeck
Maintainer: Jonas Haslbeck <jonashaslbeck@gmail.com>
Diff between mgm versions 1.2-2 dated 2017-11-22 and 1.2-3 dated 2018-06-05
DESCRIPTION | 12 MD5 | 96 ++++--- NAMESPACE | 8 NEWS | 14 + R/DrawFG.R | 588 ++++++++++++++++++++++++++++++++++++----------- R/FactorGraph.R |only R/FlagSymmetric.R | 29 +- R/ModelMatrix.R | 187 +++++++++----- R/ModelMatrix_standard.R |only R/bwSelPredict.R | 42 ++- R/bwSelect.R | 14 - R/calcLL.R | 8 R/getSign.R | 134 ++++++---- R/glmnetRequirements.R | 2 R/lagData.R | 85 ++---- R/mgm.R | 393 ++++++++++++++++++++----------- R/mgmsampler.R | 26 -- R/mvar.R | 59 +++- R/mvarsampler.R | 24 + R/nodeEst.R | 19 + R/plotRes.R | 16 - R/predict.mgm.R | 43 ++- R/predictCore_stat.R | 129 ++++++---- R/print.int.R |only R/print.mgm.R | 54 +++- R/resample.R | 35 ++ R/showInteraction.R | 143 +++++++---- R/startup_msg.R | 1 R/tvmgm.R | 94 +------ R/tvmvar.R | 19 + R/tvmvarsampler.R | 2 data/B5MS.RData |only data/Fried2015.RData |only data/modnw.RData |only data/mvar_data.RData |binary man/FactorGraph.Rd |only man/bwSelect.Rd | 16 - man/datasets.Rd | 16 + man/mgm-internal.Rd | 14 - man/mgm-package.Rd | 2 man/mgm.Rd | 125 ++++----- man/mgmsampler.Rd | 47 +-- man/mvar.Rd | 59 +--- man/mvarsampler.Rd | 17 - man/plotRes.Rd | 20 - man/predict.mgm.Rd | 56 +--- man/print.int.Rd |only man/resample.Rd | 29 +- man/showInteraction.Rd | 5 man/tvmgm.Rd | 59 +--- man/tvmgmsampler.Rd | 56 ++-- man/tvmvar.Rd | 57 ++-- man/tvmvarsampler.Rd | 42 +-- 53 files changed, 1786 insertions(+), 1110 deletions(-)
Title: Additional Univariate and Multivariate Distributions
Description: Density, distribution function, quantile function
and random generation for a number of univariate
and multivariate distributions. This package implements the
following distributions: Bernoulli, beta-binomial, beta-negative
binomial, beta prime, Bhattacharjee, Birnbaum-Saunders,
bivariate normal, bivariate Poisson, categorical, Dirichlet,
Dirichlet-multinomial, discrete gamma, discrete Laplace,
discrete normal, discrete uniform, discrete Weibull, Frechet,
gamma-Poisson, generalized extreme value, Gompertz,
generalized Pareto, Gumbel, half-Cauchy, half-normal, half-t,
Huber density, inverse chi-squared, inverse-gamma, Kumaraswamy,
Laplace, location-scale t, logarithmic, Lomax, multivariate
hypergeometric, multinomial, negative hypergeometric,
non-standard beta, normal mixture, Poisson mixture, Pareto,
power, reparametrized beta, Rayleigh, shifted Gompertz, Skellam,
slash, triangular, truncated binomial, truncated normal,
truncated Poisson, Tukey lambda, Wald, zero-inflated binomial,
zero-inflated negative binomial, zero-inflated Poisson.
Author: Tymoteusz Wolodzko
Maintainer: Tymoteusz Wolodzko <twolodzko+extraDistr@gmail.com>
Diff between extraDistr versions 1.8.8 dated 2018-01-04 and 1.8.9 dated 2018-06-05
DESCRIPTION | 11 +++-- MD5 | 14 +++---- NEWS.md | 6 +++ R/inverse-gamma-distribution.R | 8 ++-- man/InvGamma.Rd | 8 ++-- src/inverse-gamma-distribution.cpp | 7 +-- tests/testthat/helper_pure_r_implementations.R | 2 - tests/testthat/test-pure-r-benchmarks.R | 49 +++++++++++++++++++------ 8 files changed, 70 insertions(+), 35 deletions(-)
Title: Algorithms for Finding Fixed Point Vectors of Functions
Description: For functions that take and return vectors (or scalars), this package provides 8 algorithms for finding fixed point vectors (vectors for which the inputs and outputs to the function are the same vector). These algorithms include Anderson (1965) acceleration <doi:10.1145/321296.321305>, epsilon extrapolation methods (Wynn 1962 <doi:10.2307/2004051>) and minimal polynomial methods (Cabay and Jackson 1976 <doi:10.1137/0713060>).
Author: Stuart Baumann & Margaryta Klymak
Maintainer: Stuart Baumann <Stuart@StuartBaumann.com>
Diff between FixedPoint versions 0.4 dated 2018-03-30 and 0.5 dated 2018-06-05
DESCRIPTION | 9 MD5 | 40 R/MainFunctions.R | 4 inst/doc/FixedPoint.R | 8 inst/doc/FixedPoint.Rmd | 18 inst/doc/FixedPoint.pdf | 2171 +++++++++++------------ man/FixedPoint.Rd | 2 tests/testthat/Rplots.pdf |binary tests/testthat/test_Babylon.R | 19 tests/testthat/test_Cosine.R | 29 tests/testthat/test_CubicRoot.R | 15 tests/testthat/test_DiffussionProcess.R | 9 tests/testthat/test_EquilibriumPrices.R | 10 tests/testthat/test_LinearRoot.R | 11 tests/testthat/test_Perceptron.R | 34 tests/testthat/test_PerpetualPut.R | 11 tests/testthat/test_SimpleCrossVectorDependent.R | 11 tests/testthat/test_ValueFunctionProblem.R | 13 vignettes/Bibliography.bib | 61 vignettes/FixedPoint.Rmd | 18 vignettes/PerformanceTable.png |binary 21 files changed, 1305 insertions(+), 1188 deletions(-)
Title: Tools for Epidemiologists
Description: Provides set of functions aimed at epidemiologists.
They include commands for measures of association and impact for case control studies and cohort studies.
They may be particularly useful for outbreak investigations and include univariate and stratified analyses.
The functions for cohort studies include the CS(), CSTable() and CSInter() commands.
The functions for case control studies include the CC(), CCTable() and CCInter() commands.
Author: Jean Pierre Decorps [aut, cre],
Esther Kissling [ctb]
Maintainer: Jean Pierre Decorps <jp.decorps@epiconcept.fr>
Diff between EpiStats versions 1.0 dated 2017-12-12 and 1.1 dated 2018-06-05
DESCRIPTION | 14 ++- MD5 | 20 ++-- R/CCInter_.R | 119 ++++++++++++++++++++++++++--- R/CSInter_.R | 200 +++++++++++++++++++++++++++++++++---------------- README.md | 6 + inst/doc/EpiStats.Rmd | 2 inst/doc/EpiStats.pdf |binary man/CCInter.Rd | 5 - man/CS.Rd | 6 - man/CSInter.Rd | 3 vignettes/EpiStats.Rmd | 2 11 files changed, 281 insertions(+), 96 deletions(-)
Title: Residual Diagnostics for Hierarchical (Multi-Level / Mixed)
Regression Models
Description: The 'DHARMa' package uses a simulation-based approach to create
readily interpretable scaled (quantile) residuals for fitted (generalized) linear mixed
models. Currently supported are (generalized) linear mixed models from 'lme4'
(classes 'lmerMod', 'glmerMod') and 'glmmTMB', generalized additive models ('gam' from 'mgcv'),
'glm' (including 'negbin' from 'MASS', but excluding quasi-distributions) and 'lm' model
classes. Moreover, externally created simulations, e.g. posterior predictive simulations
from Bayesian software such as 'JAGS', 'STAN', or 'BUGS' can be processed as well.
The resulting residuals are standardized to values between 0 and 1 and can be interpreted
as intuitively as residuals from a linear regression. The package also provides a number of
plot and test functions for typical model misspecification problems, such as
over/underdispersion, zero-inflation, and residual spatial and temporal autocorrelation.
Author: Florian Hartig [aut, cre] (Theoretical Ecology, University of
Regensburg, Regensburg, Germany)
Maintainer: Florian Hartig <florian.hartig@biologie.uni-regensburg.de>
Diff between DHARMa versions 0.1.6 dated 2018-03-18 and 0.2.0 dated 2018-06-05
DHARMa-0.1.6/DHARMa/R/benchmarkOverdispersion.R |only DHARMa-0.1.6/DHARMa/R/benchmarkPvalues.R |only DHARMa-0.1.6/DHARMa/R/benchmarkUniformity.R |only DHARMa-0.1.6/DHARMa/R/testsParametric.R |only DHARMa-0.1.6/DHARMa/R/testsResiduals.R |only DHARMa-0.1.6/DHARMa/inst/examples/benchmarkUniformityHelp.R |only DHARMa-0.1.6/DHARMa/man/benchmarkOverdispersion.Rd |only DHARMa-0.1.6/DHARMa/man/benchmarkP.Rd |only DHARMa-0.1.6/DHARMa/man/benchmarkUniformity.Rd |only DHARMa-0.1.6/DHARMa/tests/manualTests/PowerBias.Rmd |only DHARMa-0.1.6/DHARMa/vignettes/ECDFmotivation.pdf |only DHARMa-0.1.6/DHARMa/vignettes/overdispersion.png |only DHARMa-0.2.0/DHARMa/DESCRIPTION | 21 DHARMa-0.2.0/DHARMa/MD5 | 96 DHARMa-0.2.0/DHARMa/NAMESPACE | 13 DHARMa-0.2.0/DHARMa/NEWS | 24 DHARMa-0.2.0/DHARMa/R/DHARMa.R | 74 DHARMa-0.2.0/DHARMa/R/createData.R | 4 DHARMa-0.2.0/DHARMa/R/plotResiduals.R | 48 DHARMa-0.2.0/DHARMa/R/random.R | 46 DHARMa-0.2.0/DHARMa/R/runBenchmarks.R |only DHARMa-0.2.0/DHARMa/R/simulateResiduals.R | 363 ++ DHARMa-0.2.0/DHARMa/R/tests.R |only DHARMa-0.2.0/DHARMa/R/zzz.R |only DHARMa-0.2.0/DHARMa/inst/doc/DHARMa.R | 107 DHARMa-0.2.0/DHARMa/inst/doc/DHARMa.Rmd | 246 + DHARMa-0.2.0/DHARMa/inst/doc/DHARMa.html | 1488 ++++++++---- DHARMa-0.2.0/DHARMa/inst/examples/getRandomStateHelp.R |only DHARMa-0.2.0/DHARMa/inst/examples/helpRefit.R |only DHARMa-0.2.0/DHARMa/inst/examples/plotsHelp.R | 7 DHARMa-0.2.0/DHARMa/inst/examples/runBenchmarksHelp.R |only DHARMa-0.2.0/DHARMa/inst/examples/simulateResidualsHelp.R | 16 DHARMa-0.2.0/DHARMa/inst/examples/testsHelp.R |only DHARMa-0.2.0/DHARMa/man/DHARMa.Rd | 2 DHARMa-0.2.0/DHARMa/man/createData.Rd | 16 DHARMa-0.2.0/DHARMa/man/getRandomState.Rd |only DHARMa-0.2.0/DHARMa/man/plot.DHARMa.Rd | 69 DHARMa-0.2.0/DHARMa/man/plotQQunif.Rd | 7 DHARMa-0.2.0/DHARMa/man/plotResiduals.Rd | 9 DHARMa-0.2.0/DHARMa/man/plotSimulatedResiduals.Rd | 53 DHARMa-0.2.0/DHARMa/man/print.DHARMa.Rd | 2 DHARMa-0.2.0/DHARMa/man/recalculateResiduals.Rd |only DHARMa-0.2.0/DHARMa/man/refit.glmmTMB.Rd |only DHARMa-0.2.0/DHARMa/man/refit.lm.Rd |only DHARMa-0.2.0/DHARMa/man/residuals.DHARMa.Rd |only DHARMa-0.2.0/DHARMa/man/runBenchmarks.Rd |only DHARMa-0.2.0/DHARMa/man/simulateResiduals.Rd | 31 DHARMa-0.2.0/DHARMa/man/testDispersion.Rd |only DHARMa-0.2.0/DHARMa/man/testGeneric.Rd |only DHARMa-0.2.0/DHARMa/man/testOverdispersion.Rd | 22 DHARMa-0.2.0/DHARMa/man/testOverdispersionParametric.Rd | 28 DHARMa-0.2.0/DHARMa/man/testPDistribution.Rd | 2 DHARMa-0.2.0/DHARMa/man/testResiduals.Rd |only DHARMa-0.2.0/DHARMa/man/testSimulatedResiduals.Rd | 10 DHARMa-0.2.0/DHARMa/man/testSpatialAutocorrelation.Rd | 12 DHARMa-0.2.0/DHARMa/man/testTemporalAutocorrelation.Rd | 12 DHARMa-0.2.0/DHARMa/man/testUniformity.Rd | 14 DHARMa-0.2.0/DHARMa/man/testZeroInflation.Rd | 64 DHARMa-0.2.0/DHARMa/tests/manualTests/readme.txt |only DHARMa-0.2.0/DHARMa/tests/testthat/testCreateDharma.R |only DHARMa-0.2.0/DHARMa/tests/testthat/testModelTypes.R | 237 - DHARMa-0.2.0/DHARMa/tests/testthat/testPlots.R | 6 DHARMa-0.2.0/DHARMa/tests/testthat/testTests.R |only DHARMa-0.2.0/DHARMa/vignettes/DHARMa.Rmd | 246 + DHARMa-0.2.0/DHARMa/vignettes/Overdispersion.png |only 65 files changed, 2238 insertions(+), 1157 deletions(-)
Title: Multivariate Nonparametric Methods Based on Spatial Signs and
Ranks
Description: Test and estimates of location, tests of independence, tests of sphericity and several estimates of shape all based on spatial signs, symmetrized signs, ranks and signed ranks. For details, see Oja and Randles (2004) <doi:10.1214/088342304000000558> and Oja (2010) <doi:10.1007/978-1-4419-0468-3>.
Author: Seija Sirkia, Jari Miettinen, Klaus Nordhausen, Hannu Oja, Sara Taskinen
Maintainer: Jari Miettinen <jari.p.miettinen@aalto.fi>
Diff between SpatialNP versions 1.1-2 dated 2017-09-12 and 1.1-3 dated 2018-06-05
DESCRIPTION | 10 - MD5 | 34 +++--- R/RCov.R | 14 +- R/SCov.R | 24 ++-- R/SSCov.R | 14 +- R/ae.hl.estimate.R | 112 ++++++++++----------- R/ae.spatial.median.R | 112 ++++++++++----------- R/mvhuberM.R | 138 +++++++++++++------------- R/rank.shape.R | 54 +++++----- R/signrank.shape.R | 118 +++++++++++----------- R/signrankinternals.R | 6 - R/signs.shape.R | 128 ++++++++++++------------ R/spatial.signs.R | 128 ++++++++++++------------ R/sr.indep.test.R | 246 +++++++++++++++++++++++------------------------ R/symmhuber.R | 60 +++++------ R/symmsign.shape.R | 54 +++++----- inst/ChangeLog | 9 + man/SpatialNP-package.Rd | 4 18 files changed, 638 insertions(+), 627 deletions(-)
Title: Tools for Identifying Important Nodes in Networks
Description: Includes assorted tools for network analysis. Bridge centrality, impact, & goldbricker.
Author: Payton Jones [aut, cre]
Maintainer: Payton Jones <payton_jones@g.harvard.edu>
Diff between networktools versions 1.1.2 dated 2018-05-10 and 1.2.0 dated 2018-06-05
DESCRIPTION | 10 +++++----- MD5 | 22 ++++++++++++++-------- NAMESPACE | 8 ++++++++ NEWS.md | 6 ++++++ R/EIGENnet.R |only R/MDSnet.R |only R/PCAnet.R |only R/bridge.R | 18 +++++++++++++++--- R/imports.R | 5 +++++ R/summary_print_plot.R | 15 ++++++++++----- man/EIGENnet.Rd |only man/MDSnet.Rd |only man/PCAnet.Rd |only man/bridge.Rd | 10 +++++++--- man/plot.bridge.Rd | 6 ++++-- 15 files changed, 74 insertions(+), 26 deletions(-)
Title: Microplots (Sparklines) in 'LaTeX', 'Word', 'HTML', 'Excel'
Description: The microplot function writes a set of R graphics files to be used as
microplots (sparklines) in tables in either 'LaTeX', 'HTML', 'Word',
or 'Excel' files. For 'LaTeX', we provide methods for the
Hmisc::latex() generic function to construct 'latex' tabular
environments which include the graphs. These can be used directly
with the operating system 'pdflatex' or 'latex' command, or by using
one of 'Sweave', 'knitr', 'rmarkdown', or 'Emacs org-mode' as an
intermediary. For 'MS Word', the msWord() function uses the
'ReporteRs' package to construct 'Word' tables which include the
graphs. There are several distinct approaches for constructing HTML
files. The simplest is to use the msWord() function with argument
filetype="html". Alternatively, use either 'Emacs org-mode' or the
htmlTable::htmlTable() function to construct an 'HTML' file
containing tables which include the graphs. See the documentation
for our as.htmlimg() function. For 'Excel' use on 'Windows', the
file examples/irisExcel.xls includes 'VBA' code which brings the
individual panels into individual cells in the spreadsheet.
Examples in the examples and demo subdirectories are shown with
'lattice' graphics, 'ggplot2' graphics, and 'base' graphics.
Examples for 'LaTeX' include 'Sweave' (both 'LaTeX'-style and
'Noweb'-style), 'knitr', 'emacs org-mode', and 'rmarkdown' input
files and their 'pdf' output files. Examples for 'HTML' include
'org-mode' and 'Rmd' input files and their webarchive 'HTML' output
files. In addition, the as.orgtable() function can display a
data.frame in an 'org-mode' document. The examples for 'MS Word'
(with either filetype="docx" or filetype="html") work with all
operating systems. The package does not require the installation of
'LaTeX' or 'MS Word' to be able to write '.tex' or '.docx' files.
Author: Richard M. Heiberger, with contributions from Karen Byron and Nooreen Dabbish.
Maintainer: Richard M. Heiberger <rmh@temple.edu>
Diff between microplot versions 1.0-38 dated 2018-03-13 and 1.0-39 dated 2018-06-05
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- NEWS | 15 +++++++++++++++ R/microplot.ggplot.R | 5 ++++- build/partial.rdb |binary build/vignette.rds |binary demo/latex-ggplot.r | 6 ++++-- inst/doc/rmhPoster.pdf |binary man/latex.trellis.Rd | 2 +- 9 files changed, 36 insertions(+), 16 deletions(-)
Title: Estimate Global Clustering in Infectious Disease
Description: Implements various novel and standard
clustering statistics and other analyses useful for understanding the
spread of infectious disease.
Author: Justin Lessler <justin@jhu.edu>, Henrik Salje <hsalje@jhsph.edu>, John Giles <gilesjohnr@gmail.com>
Maintainer: Justin Lessler <justin@jhu.edu>
Diff between IDSpatialStats versions 0.2.2 dated 2016-09-19 and 0.3.4 dated 2018-06-05
DESCRIPTION | 17 MD5 | 92 NAMESPACE | 67 R/examples/est_transdist.R |only R/examples/est_transdist_bootstrap_ci.R |only R/examples/est_transdist_temporal.R |only R/examples/est_transdist_temporal_bootstrap_ci.R |only R/examples/est_transdist_theta_weights.R |only R/examples/est_wt_matrix.R |only R/examples/est_wt_matrix_weights.R |only R/examples/get_transdist_theta.R |only R/examples/sim_epidemic.R |only R/spatialfuncs.r | 2485 +++++++++++------------ R/transdistfuncs.r |only build |only inst/doc |only inst/tests/test-simulateepidemic.r |only inst/tests/test-thetaweights.r |only inst/tests/test-transdist.r |only inst/tests/test-transdistbootstrapci.r |only inst/tests/test-transdisttemporal.r |only inst/tests/test-wallingateunis.r |only man/DengueSimR01.Rd | 33 man/DengueSimR02.Rd | 33 man/DengueSimRepresentative.Rd | 33 man/est.transdist.Rd |only man/est.transdist.bootstrap.ci.Rd |only man/est.transdist.temporal.Rd |only man/est.transdist.temporal.bootstrap.ci.Rd |only man/est.transdist.theta.weights.Rd |only man/est.wt.matrix.Rd |only man/est.wt.matrix.weights.Rd |only man/get.pi.Rd | 127 - man/get.pi.bootstrap.Rd | 99 man/get.pi.ci.Rd | 97 man/get.pi.permute.Rd | 81 man/get.pi.typed.Rd | 99 man/get.pi.typed.bootstrap.Rd | 83 man/get.pi.typed.permute.Rd | 91 man/get.tau.Rd | 133 - man/get.tau.bootstrap.Rd | 93 man/get.tau.ci.Rd | 101 man/get.tau.permute.Rd | 93 man/get.tau.typed.Rd | 123 - man/get.tau.typed.bootstrap.Rd | 99 man/get.tau.typed.permute.Rd | 101 man/get.theta.Rd | 129 - man/get.theta.bootstrap.Rd | 99 man/get.theta.ci.Rd | 97 man/get.theta.permute.Rd | 83 man/get.theta.typed.Rd | 103 man/get.theta.typed.bootstrap.Rd | 85 man/get.theta.typed.permute.Rd | 93 man/get.transdist.theta.Rd |only man/sim.epidemic.Rd |only man/sim.plot.Rd |only src/init.c |only vignettes |only 58 files changed, 2455 insertions(+), 2414 deletions(-)
More information about IDSpatialStats at CRAN
Permanent link
Title: Statistical Analysis and Data Display: Heiberger and Holland
Description: Support software for Statistical Analysis and Data Display (Second Edition, Springer, ISBN 978-1-4939-2121-8, 2015) and (First Edition, Springer, ISBN 0-387-40270-5, 2004) by Richard M. Heiberger and Burt Holland. This contemporary presentation of statistical methods features extensive use of graphical displays for exploring data and for displaying the analysis. The second edition includes redesigned graphics and additional chapters. The authors emphasize how to construct and interpret graphs, discuss principles of graphical design, and show how accompanying traditional tabular results are used to confirm the visual impressions derived directly from the graphs. Many of the graphical formats are novel and appear here for the first time in print. All chapters have exercises. All functions introduced in the book are in the package. R code for all examples, both graphs and tables, in the book is included in the scripts directory of the package.
Author: Richard M. Heiberger
Maintainer: Richard M. Heiberger <rmh@temple.edu>
Diff between HH versions 3.1-34 dated 2017-01-18 and 3.1-35 dated 2018-06-05
DESCRIPTION | 8 +-- MD5 | 41 ++++++++++--------- NEWS | 17 ++++++++ build |only inst/scripts/hh2/dsgn.R | 85 ++++++++++++++++++++++++----------------- man/CIplot.Rd | 2 man/HH.package.Rd | 35 ++++------------ man/NormalAndT.Rd | 2 man/ResizeEtc.Rd | 4 - man/as.likert.Rd | 2 man/as.multicomp.Rd | 4 - man/bivariateNormal.Rd | 4 - man/glht.mcp.993.Rd | 2 man/if.R.Rd | 2 man/likert.Rd | 20 ++++----- man/likertColor.Rd | 14 +++--- man/likertMosaic.Rd | 4 - man/matrix.trellis.Rd | 2 man/mmc.Rd | 5 +- man/objip.Rd | 2 man/print.TwoTrellisColumns.Rd | 4 - man/rbind.trellis.Rd | 2 22 files changed, 140 insertions(+), 121 deletions(-)
Title: Tools to Download and Work with USDA Cropscape Data
Description: Downloads USDA National Agricultural Statistics Service (NASS)
cropscape data for a specified state. Utilities for fips, abbreviation,
and name conversion are also provided. Full functionality requires an
internet connection, but data sets can be cached for later off-line use.
Author: Jonathan Lisic [cre],
Lu Chen [aut],
Joseph Stachelek [ctb]
Maintainer: Jonathan Lisic <jlisic@gmail.com>
Diff between cdlTools versions 0.13 dated 2018-04-08 and 0.14 dated 2018-06-05
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/createComparableCDL.R | 6 +++--- data/stateNames.rda |binary man/createComparableCDL.Rd | 6 +++--- 5 files changed, 14 insertions(+), 14 deletions(-)
Title: Efficient Rolling / Windowed Operations
Description: Provides fast and efficient routines for
common rolling / windowed operations. Routines for the
efficient computation of windowed mean, median,
sum, product, minimum, maximum, standard deviation
and variance are provided.
Author: Kevin Ushey
Maintainer: Kevin Ushey <kevinushey@gmail.com>
Diff between RcppRoll versions 0.2.2 dated 2015-04-04 and 0.3.0 dated 2018-06-05
RcppRoll-0.2.2/RcppRoll/R/get_rollit_source.R |only RcppRoll-0.2.2/RcppRoll/R/rollit.R |only RcppRoll-0.2.2/RcppRoll/R/rollit_example.R |only RcppRoll-0.2.2/RcppRoll/R/rollit_generated.R |only RcppRoll-0.2.2/RcppRoll/R/rollit_raw.R |only RcppRoll-0.2.2/RcppRoll/man/get_rollit_source.Rd |only RcppRoll-0.2.2/RcppRoll/man/rollit.Rd |only RcppRoll-0.2.2/RcppRoll/man/rollit_example.Rd |only RcppRoll-0.2.2/RcppRoll/man/rollit_raw.Rd |only RcppRoll-0.2.2/RcppRoll/src/rollit.cpp |only RcppRoll-0.3.0/RcppRoll/DESCRIPTION | 11 - RcppRoll-0.3.0/RcppRoll/MD5 | 32 ++--- RcppRoll-0.3.0/RcppRoll/NAMESPACE | 9 - RcppRoll-0.3.0/RcppRoll/NEWS.md |only RcppRoll-0.3.0/RcppRoll/R/RcppExports.R | 38 +++--- RcppRoll-0.3.0/RcppRoll/R/RcppRoll-package.R | 4 RcppRoll-0.3.0/RcppRoll/R/RcppRoll.R |only RcppRoll-0.3.0/RcppRoll/README.md | 9 - RcppRoll-0.3.0/RcppRoll/man/RcppRoll-exports.Rd | 35 ++--- RcppRoll-0.3.0/RcppRoll/man/RcppRoll.Rd | 6 RcppRoll-0.3.0/RcppRoll/src/RcppExports.cpp | 143 +++++++++++++---------- RcppRoll-0.3.0/RcppRoll/src/RcppRoll.cpp |only RcppRoll-0.3.0/RcppRoll/tests |only 23 files changed, 152 insertions(+), 135 deletions(-)
Title: Box-Cox-Type Transformations for Linear and Logistic Models with
Random Effects
Description: Box-Cox-type transformations for linear and logistic models
with random effects using non-parametric profile maximum
likelihood estimation. The main functions are optim.boxcox()
and boxcoxtype().
Author: Amani Almohaimeed and Jochen Einbeck
Maintainer: Amani Almohaimeed <amani.almohaimeed@gmail.com>
Diff between boxcoxmix versions 0.15 dated 2017-12-21 and 0.20 dated 2018-06-05
boxcoxmix-0.15/boxcoxmix/vignettes/boxcoxmix-2.pdf |only boxcoxmix-0.20/boxcoxmix/DESCRIPTION | 25 ++--- boxcoxmix-0.20/boxcoxmix/MD5 | 41 ++++---- boxcoxmix-0.20/boxcoxmix/NAMESPACE | 5 + boxcoxmix-0.20/boxcoxmix/R/BoxCoxmix.R | 94 +++++------------- boxcoxmix-0.20/boxcoxmix/R/boxcoxmix-package.R | 15 ++- boxcoxmix-0.20/boxcoxmix/R/boxcoxtype.R |only boxcoxmix-0.20/boxcoxmix/R/kfind.R |only boxcoxmix-0.20/boxcoxmix/R/optim.boxcox.R | 63 ++++++------ boxcoxmix-0.20/boxcoxmix/R/summary.boxcoxmix.R | 39 ++++++- boxcoxmix-0.20/boxcoxmix/R/tolfind.boxcox.R | 64 +++++++----- boxcoxmix-0.20/boxcoxmix/build/vignette.rds |binary boxcoxmix-0.20/boxcoxmix/inst/doc/boxcoxmix.R | 16 +-- boxcoxmix-0.20/boxcoxmix/inst/doc/boxcoxmix.Rnw | 105 ++++++++++----------- boxcoxmix-0.20/boxcoxmix/inst/doc/boxcoxmix.pdf |binary boxcoxmix-0.20/boxcoxmix/man/Kfind.Rd |only boxcoxmix-0.20/boxcoxmix/man/boxcoxmix-package.Rd | 15 ++- boxcoxmix-0.20/boxcoxmix/man/boxcoxtype.Rd |only boxcoxmix-0.20/boxcoxmix/man/np.boxcoxmix.Rd | 9 + boxcoxmix-0.20/boxcoxmix/man/optim.boxcox.Rd | 33 +++--- boxcoxmix-0.20/boxcoxmix/man/plot.Rd | 2 boxcoxmix-0.20/boxcoxmix/man/tolfind.boxcox.Rd | 29 +++-- boxcoxmix-0.20/boxcoxmix/man/vc.em.Rd | 4 boxcoxmix-0.20/boxcoxmix/vignettes/boxcoxmix.Rnw | 105 ++++++++++----------- 24 files changed, 336 insertions(+), 328 deletions(-)
Title: Import Articles from 'LexisNexis' Using the 'tm' Text Mining
Framework
Description: Provides a 'tm' Source to create corpora from
articles exported from the 'LexisNexis' content provider as
HTML files. It is able to read both text content and meta-data
information (including source, date, title, author and pages).
Note that the file format is highly unstable: there is no warranty
that this package will work for your corpus, and you may have
to adjust the code to adapt it to your particular format.
Author: Milan Bouchet-Valat [aut, cre]
Maintainer: Milan Bouchet-Valat <nalimilan@club.fr>
Diff between tm.plugin.lexisnexis versions 1.3.1 dated 2017-06-30 and 1.4.0 dated 2018-06-05
DESCRIPTION | 10 +- MD5 | 10 +- NAMESPACE | 2 NEWS | 3 R/LexisNexisSource.R | 7 - R/readLexisNexisHTML.R | 179 ++++++++++++++++++++++++++++--------------------- 6 files changed, 120 insertions(+), 91 deletions(-)
More information about tm.plugin.lexisnexis at CRAN
Permanent link
Title: 'qpOASES' Plugin for the 'R' Optimization Infrastructure
Description: Enhances the 'R' Optimization Infrastructure ('ROI') package
with the quadratic solver 'qpOASES'. More information about
'qpOASES' can be found at <https://projects.coin-or.org/qpOASES/>.
Author: Florian Schwendinger [aut, cre],
Hans Joachim Ferreau [cph],
Andreas Potschka [cph],
Christian Kirches [cph],
Dennis Janka [cph],
Andreas Waechter [cph]
Maintainer: Florian Schwendinger <FlorianSchwendinger@gmx.at>
Diff between ROI.plugin.qpoases versions 0.3-0 dated 2018-04-23 and 0.3-1 dated 2018-06-05
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/plugin.R | 9 +++++++-- tests/test_qpoases.R | 18 ++++++++++++++++++ 4 files changed, 31 insertions(+), 8 deletions(-)
More information about ROI.plugin.qpoases at CRAN
Permanent link
Title: Quantitative Analysis of Textual Data
Description: A fast, flexible, and comprehensive framework for
quantitative text analysis in R. Provides functionality for corpus management,
creating and manipulating tokens and ngrams, exploring keywords in context,
forming and manipulating sparse matrices
of documents by features and feature co-occurrences, analyzing keywords, computing feature similarities and
distances, applying content dictionaries, applying supervised and unsupervised machine learning,
visually representing text and text analyses, and more.
Author: Kenneth Benoit [cre, aut, cph]
(<https://orcid.org/0000-0002-0797-564X>),
Kohei Watanabe [aut] (<https://orcid.org/0000-0001-6519-5265>),
Haiyan Wang [aut] (<https://orcid.org/0000-0003-4992-4311>),
Paul Nulty [aut] (<https://orcid.org/0000-0002-7214-4666>),
Adam Obeng [aut] (<https://orcid.org/0000-0002-2906-4775>),
Stefan Müller [aut] (<https://orcid.org/0000-0002-6315-4125>),
Akitaka Matsuo [aut] (<https://orcid.org/0000-0002-3323-6330>),
Patrick O. Perry [aut] (<https://orcid.org/0000-0001-7460-127X>),
Jouni Kuha [aut] (<https://orcid.org/0000-0002-1156-8465>),
Benjamin Lauderdale [aut] (0000-0003-3090-0969; wordfish C++ code),
William Lowe [aut] (<https://orcid.org/0000-0002-1549-6163>),
Christian Müller [ctb],
Lori Young [dtc] (Lexicoder Sentiment Dictionary 2015),
Stuart Soroka [dtc] (Lexicoder Sentiment Dictionary 2015),
Ian Fellows [cph] (authored wordcloud C source code (modified)),
European Research Council [fnd] (ERC-2011-StG 283794-QUANTESS)
Maintainer: Kenneth Benoit <kbenoit@lse.ac.uk>
Diff between quanteda versions 1.2.0 dated 2018-04-15 and 1.3.0 dated 2018-06-05
quanteda-1.2.0/quanteda/inst/LICENSE.txt |only quanteda-1.2.0/quanteda/inst/doc/design.R |only quanteda-1.2.0/quanteda/inst/doc/design.Rmd |only quanteda-1.2.0/quanteda/inst/doc/design.html |only quanteda-1.2.0/quanteda/tests/testthat/Rplots1.pdf |only quanteda-1.2.0/quanteda/tests/testthat/Rplots2.pdf |only quanteda-1.2.0/quanteda/tests/testthat/Rplots3.pdf |only quanteda-1.2.0/quanteda/vignettes/design.Rmd |only quanteda-1.3.0/quanteda/DESCRIPTION | 98 +++-- quanteda-1.3.0/quanteda/MD5 | 152 +++---- quanteda-1.3.0/quanteda/NAMESPACE | 6 quanteda-1.3.0/quanteda/NEWS.md | 19 quanteda-1.3.0/quanteda/R/casechange-functions.R | 9 quanteda-1.3.0/quanteda/R/convert.R | 43 +- quanteda-1.3.0/quanteda/R/corpus-methods-base.R | 5 quanteda-1.3.0/quanteda/R/corpus.R | 84 ++-- quanteda-1.3.0/quanteda/R/corpus_segment.R | 9 quanteda-1.3.0/quanteda/R/data-documentation.R | 14 quanteda-1.3.0/quanteda/R/dfm-classes.R | 22 - quanteda-1.3.0/quanteda/R/dfm.R | 13 quanteda-1.3.0/quanteda/R/dfm_lookup.R | 2 quanteda-1.3.0/quanteda/R/dfm_select.R | 14 quanteda-1.3.0/quanteda/R/dictionaries.R | 16 quanteda-1.3.0/quanteda/R/directionchange-functions.R |only quanteda-1.3.0/quanteda/R/textmodel_affinity.R | 2 quanteda-1.3.0/quanteda/R/textmodel_lsa.R | 3 quanteda-1.3.0/quanteda/R/textmodel_nb.R | 196 ++++------ quanteda-1.3.0/quanteda/R/textmodel_wordscores.R | 91 +--- quanteda-1.3.0/quanteda/R/textplot_keyness.R | 2 quanteda-1.3.0/quanteda/R/textplot_scale1d.R | 2 quanteda-1.3.0/quanteda/R/textstat_readability.R | 4 quanteda-1.3.0/quanteda/R/utils.R | 16 quanteda-1.3.0/quanteda/README.md | 105 +---- quanteda-1.3.0/quanteda/build/vignette.rds |binary quanteda-1.3.0/quanteda/inst/CITATION | 8 quanteda-1.3.0/quanteda/inst/doc/quickstart.R |only quanteda-1.3.0/quanteda/inst/doc/quickstart.Rmd |only quanteda-1.3.0/quanteda/inst/doc/quickstart.html |only quanteda-1.3.0/quanteda/man/as.data.frame.dfm.Rd |only quanteda-1.3.0/quanteda/man/as.matrix.dfm.Rd | 21 - quanteda-1.3.0/quanteda/man/convert.Rd | 16 quanteda-1.3.0/quanteda/man/corpus.Rd | 16 quanteda-1.3.0/quanteda/man/corpus_segment.Rd | 9 quanteda-1.3.0/quanteda/man/data_corpus_dailnoconf1991.Rd | 7 quanteda-1.3.0/quanteda/man/data_dictionary_LSD2015.Rd | 7 quanteda-1.3.0/quanteda/man/dfm_select.Rd | 8 quanteda-1.3.0/quanteda/man/friendly_class_undefined_message.Rd | 2 quanteda-1.3.0/quanteda/man/predict.textmodel_nb.Rd | 27 - quanteda-1.3.0/quanteda/man/predict.textmodel_wordscores.Rd | 27 - quanteda-1.3.0/quanteda/man/quanteda-package.Rd | 28 + quanteda-1.3.0/quanteda/man/summary.corpus.Rd | 5 quanteda-1.3.0/quanteda/man/textmodel_wordscores.Rd | 6 quanteda-1.3.0/quanteda/man/textplot_scale1d.Rd | 2 quanteda-1.3.0/quanteda/man/textstat_readability.Rd | 4 quanteda-1.3.0/quanteda/man/tokens_tortl.Rd |only quanteda-1.3.0/quanteda/man/unused_dots.Rd |only quanteda-1.3.0/quanteda/src/tokens_lookup_mt.cpp | 16 quanteda-1.3.0/quanteda/tests/cheatsheet/README.md | 6 quanteda-1.3.0/quanteda/tests/cheatsheet/code/plot_cheatsheet.R | 22 - quanteda-1.3.0/quanteda/tests/cheatsheet/plots/textplot_keyness.pdf |binary quanteda-1.3.0/quanteda/tests/cheatsheet/plots/textplot_scale1d.pdf |binary quanteda-1.3.0/quanteda/tests/cheatsheet/plots/textplot_wordcloud.pdf |binary quanteda-1.3.0/quanteda/tests/cheatsheet/plots/textplot_xray.pdf |binary quanteda-1.3.0/quanteda/tests/cheatsheet/quanteda-cheatsheet.pdf |binary quanteda-1.3.0/quanteda/tests/cheatsheet/quanteda-cheatsheet.pptx |binary quanteda-1.3.0/quanteda/tests/data/hebrew.txt | 9 quanteda-1.3.0/quanteda/tests/testthat.R | 2 quanteda-1.3.0/quanteda/tests/testthat/test-as.dfm.R | 28 + quanteda-1.3.0/quanteda/tests/testthat/test-convert.R | 12 quanteda-1.3.0/quanteda/tests/testthat/test-corpus.R | 69 +++ quanteda-1.3.0/quanteda/tests/testthat/test-dfm.R | 17 quanteda-1.3.0/quanteda/tests/testthat/test-dfm_group.R | 30 - quanteda-1.3.0/quanteda/tests/testthat/test-dfm_lookup.R | 17 quanteda-1.3.0/quanteda/tests/testthat/test-dfm_select.R | 13 quanteda-1.3.0/quanteda/tests/testthat/test-directionchange.R |only quanteda-1.3.0/quanteda/tests/testthat/test-fcm_methods.R | 2 quanteda-1.3.0/quanteda/tests/testthat/test-friendly_message.R |only quanteda-1.3.0/quanteda/tests/testthat/test-kwic.R | 51 +- quanteda-1.3.0/quanteda/tests/testthat/test-textmodel_NB.R | 87 +++- quanteda-1.3.0/quanteda/tests/testthat/test-textmodel_affinity.R | 15 quanteda-1.3.0/quanteda/tests/testthat/test-textmodel_wordscores.R | 143 +++---- quanteda-1.3.0/quanteda/tests/testthat/test-textplot.R | 39 + quanteda-1.3.0/quanteda/tests/testthat/test-tokens.R | 8 quanteda-1.3.0/quanteda/tests/testthat/test-tokens_lookup.R | 20 + quanteda-1.3.0/quanteda/tests/testthat/test-utils.R | 7 quanteda-1.3.0/quanteda/vignettes/quickstart.Rmd |only 86 files changed, 1038 insertions(+), 695 deletions(-)
Title: Inferring Latent Diffusion Networks
Description: This is an R implementation of the netinf algorithm (Gomez Rodriguez, Leskovec, and Krause, 2010)<doi:10.1145/1835804.1835933>. Given a set of events that spread between a set of nodes the algorithm infers the most likely stable diffusion network that is underlying the diffusion process.
Author: Fridolin Linder [aut, cre],
Bruce Desmarais [ctb]
Maintainer: Fridolin Linder <fridolin.linder@gmail.com>
Diff between NetworkInference versions 1.1.2 dated 2017-12-01 and 1.2.0 dated 2018-06-05
NetworkInference-1.1.2/NetworkInference/inst/doc/netinf_vignette.R |only NetworkInference-1.1.2/NetworkInference/inst/doc/netinf_vignette.Rmd |only NetworkInference-1.1.2/NetworkInference/inst/doc/netinf_vignette.html |only NetworkInference-1.1.2/NetworkInference/tests/testthat/test_summary.R |only NetworkInference-1.1.2/NetworkInference/vignettes/netinf_vignette.Rmd |only NetworkInference-1.2.0/NetworkInference/DESCRIPTION | 10 NetworkInference-1.2.0/NetworkInference/MD5 | 83 - NetworkInference-1.2.0/NetworkInference/NAMESPACE | 1 NetworkInference-1.2.0/NetworkInference/NEWS.md | 85 + NetworkInference-1.2.0/NetworkInference/R/RcppExports.R | 8 NetworkInference-1.2.0/NetworkInference/R/cascade.R | 60 NetworkInference-1.2.0/NetworkInference/R/data.R | 98 + NetworkInference-1.2.0/NetworkInference/R/netinf.R | 171 ++ NetworkInference-1.2.0/NetworkInference/R/plot.R | 22 NetworkInference-1.2.0/NetworkInference/R/simulate_cascades.R | 135 +- NetworkInference-1.2.0/NetworkInference/R/zzz.R | 2 NetworkInference-1.2.0/NetworkInference/build/vignette.rds |binary NetworkInference-1.2.0/NetworkInference/data/policies.RData |binary NetworkInference-1.2.0/NetworkInference/data/sim_validation.RData |only NetworkInference-1.2.0/NetworkInference/inst/doc/quickstart_vignette.R |only NetworkInference-1.2.0/NetworkInference/inst/doc/quickstart_vignette.Rmd |only NetworkInference-1.2.0/NetworkInference/inst/doc/quickstart_vignette.html |only NetworkInference-1.2.0/NetworkInference/inst/doc/tutorial_vignette.R |only NetworkInference-1.2.0/NetworkInference/inst/doc/tutorial_vignette.Rmd |only NetworkInference-1.2.0/NetworkInference/inst/doc/tutorial_vignette.html |only NetworkInference-1.2.0/NetworkInference/man/as_cascade_wide.Rd | 5 NetworkInference-1.2.0/NetworkInference/man/drop_nodes.Rd |only NetworkInference-1.2.0/NetworkInference/man/is.diffnet.Rd | 2 NetworkInference-1.2.0/NetworkInference/man/netinf.Rd | 52 NetworkInference-1.2.0/NetworkInference/man/plot.diffnet.Rd | 10 NetworkInference-1.2.0/NetworkInference/man/policies.Rd | 58 NetworkInference-1.2.0/NetworkInference/man/sim_validation.Rd |only NetworkInference-1.2.0/NetworkInference/man/simulate_cascades.Rd | 42 NetworkInference-1.2.0/NetworkInference/man/subset_cascade.Rd | 3 NetworkInference-1.2.0/NetworkInference/man/subset_cascade_time.Rd | 2 NetworkInference-1.2.0/NetworkInference/man/validation.Rd | 2 NetworkInference-1.2.0/NetworkInference/src/NetworkInference_init.c | 9 NetworkInference-1.2.0/NetworkInference/src/RcppExports.cpp | 34 NetworkInference-1.2.0/NetworkInference/src/distributions.cpp |only NetworkInference-1.2.0/NetworkInference/src/distributions.h |only NetworkInference-1.2.0/NetworkInference/src/netinf.cpp | 612 +++------- NetworkInference-1.2.0/NetworkInference/src/netinf.h |only NetworkInference-1.2.0/NetworkInference/src/netinf_utilities.cpp |only NetworkInference-1.2.0/NetworkInference/src/netinf_utilities.h |only NetworkInference-1.2.0/NetworkInference/src/possible_edges.cpp |only NetworkInference-1.2.0/NetworkInference/src/possible_edges.h |only NetworkInference-1.2.0/NetworkInference/src/spanning_tree.cpp |only NetworkInference-1.2.0/NetworkInference/src/spanning_tree.h |only NetworkInference-1.2.0/NetworkInference/src/vuong_test.cpp |only NetworkInference-1.2.0/NetworkInference/src/vuong_test.h |only NetworkInference-1.2.0/NetworkInference/tests/test_with_valgrind.sh |only NetworkInference-1.2.0/NetworkInference/tests/testthat/test_netinf.R | 81 - NetworkInference-1.2.0/NetworkInference/tests/testthat/test_plot.R | 2 NetworkInference-1.2.0/NetworkInference/tests/testthat/test_simulation.R | 69 - NetworkInference-1.2.0/NetworkInference/vignettes/quickstart_vignette.Rmd |only NetworkInference-1.2.0/NetworkInference/vignettes/readme.html |only NetworkInference-1.2.0/NetworkInference/vignettes/tutorial_vignette.Rmd |only 57 files changed, 949 insertions(+), 709 deletions(-)
More information about NetworkInference at CRAN
Permanent link
Title: Modelling Tools for Reproduction and Survival Data in
Ecotoxicology
Description: Tools for ecotoxicologists and regulators dedicated to the
mathematical and statistical modelling of toxicity test data. They use advanced and
innovative methods for a valuable quantitative environmental risk assessment.
Author: Virgile Baudrot [aut],
Sandrine Charles [aut],
Marie Laure Delignette-Muller [aut],
Wandrille Duchemin [ctb],
Guillaume Kon-Kam-King [ctb],
Christelle Lopes [ctb],
Philippe Ruiz [aut],
Philippe Veber [aut]
Maintainer: Philippe Veber <philippe.veber@univ-lyon1.fr>
Diff between morse versions 3.0.0 dated 2018-01-30 and 3.1.0 dated 2018-06-05
morse-3.0.0/morse/R/plot.survLCxCstExp.R |only morse-3.0.0/morse/man/plotDoseResponse.survData.Rd |only morse-3.1.0/morse/DESCRIPTION | 7 morse-3.1.0/morse/MD5 | 69 - morse-3.1.0/morse/NAMESPACE | 9 morse-3.1.0/morse/NEWS | 14 morse-3.1.0/morse/R/LCx.R | 2 morse-3.1.0/morse/R/LCx.survFit.R | 10 morse-3.1.0/morse/R/MFx.R |only morse-3.1.0/morse/R/MFx.survFit.R |only morse-3.1.0/morse/R/plot.LCx.R | 14 morse-3.1.0/morse/R/plot.MFx.R |only morse-3.1.0/morse/R/plot.survFitPredict.R | 12 morse-3.1.0/morse/R/plot.survFitVarExp.R | 5 morse-3.1.0/morse/R/plotDoseResponse.survDataCstExp.R | 20 morse-3.1.0/morse/R/ppc.R | 7 morse-3.1.0/morse/R/predict.survFit.R | 59 + morse-3.1.0/morse/R/priors_distribution.R |only morse-3.1.0/morse/R/survDataCheck.R | 2 morse-3.1.0/morse/README.md | 2 morse-3.1.0/morse/build/vignette.rds |binary morse-3.1.0/morse/inst/doc/modelling.Snw | 48 - morse-3.1.0/morse/inst/doc/modelling.pdf |binary morse-3.1.0/morse/inst/doc/tutorial.R | 8 morse-3.1.0/morse/inst/doc/tutorial.Rmd | 242 ++++- morse-3.1.0/morse/inst/doc/tutorial.html | 643 ++++++++++++--- morse-3.1.0/morse/man/LCx.Rd | 3 morse-3.1.0/morse/man/LCx.survFit.Rd | 4 morse-3.1.0/morse/man/MFx.Rd |only morse-3.1.0/morse/man/MFx.survFit.Rd |only morse-3.1.0/morse/man/plot.LCx.Rd | 5 morse-3.1.0/morse/man/plot.MFx.Rd |only morse-3.1.0/morse/man/plot.survFitPredict.Rd | 8 morse-3.1.0/morse/man/plotDoseResponse.survDataCstExp.Rd |only morse-3.1.0/morse/man/ppc.Rd | 8 morse-3.1.0/morse/man/predict.survFit.Rd | 8 morse-3.1.0/morse/man/priors_distribution.Rd |only morse-3.1.0/morse/man/priors_distribution.survFit.Rd |only morse-3.1.0/morse/man/survDataCheck.Rd | 2 morse-3.1.0/morse/tests/testthat/test-MFx.R |only morse-3.1.0/morse/vignettes/modelling.Snw | 48 - morse-3.1.0/morse/vignettes/tutorial.Rmd | 242 ++++- 42 files changed, 1159 insertions(+), 342 deletions(-)
Title: Fit a Penalized Continuation Ratio Model for Predicting an
Ordinal Response
Description: Provides a function for fitting a penalized constrained continuation ratio model using the glmpath algorithm and methods for extracting coefficient estimates, predicted class, class probabilities, and plots.
Author: Kellie J. Archer
Maintainer: Kellie J. Archer <archer.43@osu.edu>
Diff between glmpathcr versions 1.0.5 dated 2017-11-06 and 1.0.6 dated 2018-06-05
DESCRIPTION | 8 ++++---- MD5 | 15 ++++++++------- R/plot.glmpathcr.R | 2 +- build/partial.rdb |only build/vignette.rds |binary data/diabetes.rda |binary inst/NEWS.Rd | 10 ++++++++++ inst/doc/glmpathcr.pdf |binary man/glmpathcr-package.Rd | 31 +++++++++++++------------------ 9 files changed, 36 insertions(+), 30 deletions(-)
Title: Generalized Dissimilarity Modeling
Description: A toolkit with functions to fit, plot, and summarize Generalized Dissimilarity Models.
Author: Glenn Manion, Matthew Lisk, Simon Ferrier, Diego Nieto-Lugilde, Karel Mokany, Matthew C. Fitzpatrick
Maintainer: Matthew C. Fitzpatrick <mfitzpatrick@umces.edu>
Diff between gdm versions 1.3.10 dated 2018-06-04 and 1.3.11 dated 2018-06-05
DESCRIPTION | 10 +++++----- MD5 | 4 ++-- src/Gdmlib.cpp | 23 +++++++++++------------ 3 files changed, 18 insertions(+), 19 deletions(-)
Title: A Graphic User Interface to Dexter
Description: A graphical user interface for dexter. Offers Classical Test and Item analysis,
Item Response analysis and data management for educational and psychological tests.
Author: Jesse Koops, Eva de Schipper, Ivailo Partchev, Timo Bechger, Gunter Maris
Maintainer: jesse koops <jesse.koops@cito.nl>
Diff between dextergui versions 0.1.1 dated 2018-05-30 and 0.1.2 dated 2018-06-05
DESCRIPTION | 23 ++++----- MD5 | 25 +++++----- NAMESPACE | 48 +++++++++---------- NEWS.md | 10 +++- R/gui.R | 10 ++-- R/misc.R | 101 ++++++++++++++++++++++++++++++---------- R/serve.R | 117 ++++++++++++++++++++++------------------------- README.md |only inst/doc/dextergui.R | 2 inst/doc/dextergui.Rmd | 4 - inst/doc/dextergui.html | 2 inst/extdata/manual.html | 2 man/dextergui.Rd | 3 - vignettes/dextergui.Rmd | 4 - 14 files changed, 203 insertions(+), 148 deletions(-)
Title: Statistical Depth Functions for Multivariate Analysis
Description: Data depth concept offers a variety of powerful and user friendly
tools for robust exploration and inference for multivariate data. The offered
techniques may be successfully used in cases of lack of our knowledge on
parametric models generating data due to their nature. The
package consist of among others implementations of several data depth techniques
involving multivariate quantile-quantile plots, multivariate scatter estimators,
multivariate Wilcoxon tests and robust regressions.
Author: Zygmunt Zawadzki [aut, cre],
Daniel Kosiorowski [aut],
Krzysztof Slomczynski [ctb],
Mateusz Bocian [ctb],
Anna Wegrzynkiewicz [ctb]
Maintainer: Zygmunt Zawadzki <zygmunt@zstat.pl>
Diff between DepthProc versions 2.0.2 dated 2017-06-26 and 2.0.3 dated 2018-06-05
DepthProc-2.0.2/DepthProc/inst/doc |only DepthProc-2.0.2/DepthProc/src/init.c |only DepthProc-2.0.3/DepthProc/ChangeLog | 12 +++ DepthProc-2.0.3/DepthProc/DESCRIPTION | 8 +- DepthProc-2.0.3/DepthProc/MD5 | 32 +++++----- DepthProc-2.0.3/DepthProc/NAMESPACE | 3 DepthProc-2.0.3/DepthProc/R/RcppExports.R | 30 ++++----- DepthProc-2.0.3/DepthProc/R/depth.R | 4 - DepthProc-2.0.3/DepthProc/R/depthMedian.R | 20 ++++-- DepthProc-2.0.3/DepthProc/R/depthproc.R | 17 +++++ DepthProc-2.0.3/DepthProc/R/dynlib.R | 2 DepthProc-2.0.3/DepthProc/R/locationScaleDepth.R | 2 DepthProc-2.0.3/DepthProc/data/cracow.airpollution.rda |only DepthProc-2.0.3/DepthProc/man/cracow.airpollution.Rd |only DepthProc-2.0.3/DepthProc/man/depth.Rd | 4 - DepthProc-2.0.3/DepthProc/man/depthMedian-methods.Rd | 10 +-- DepthProc-2.0.3/DepthProc/src/Makevars | 8 ++ DepthProc-2.0.3/DepthProc/src/RcppExports.cpp | 54 ++++++++++++----- DepthProc-2.0.3/DepthProc/src/UtilsCPP.cpp | 2 19 files changed, 141 insertions(+), 67 deletions(-)
Title: Bayesian Regression Models using 'Stan'
Description: Fit Bayesian generalized (non-)linear multivariate multilevel models
using 'Stan' for full Bayesian inference. A wide range of distributions
and link functions are supported, allowing users to fit -- among others --
linear, robust linear, count data, survival, response times, ordinal,
zero-inflated, hurdle, and even self-defined mixture models all in a
multilevel context. Further modeling options include non-linear and
smooth terms, auto-correlation structures, censored data, meta-analytic
standard errors, and quite a few more. In addition, all parameters of the
response distribution can be predicted in order to perform distributional
regression. Prior specifications are flexible and explicitly encourage
users to apply prior distributions that actually reflect their beliefs.
Model fit can easily be assessed and compared with posterior predictive
checks and leave-one-out cross-validation. References: Bürkner (2017)
<doi:10.18637/jss.v080.i01>; Carpenter et al. (2017) <doi:10.18637/jss.v076.i01>.
Author: Paul-Christian Bürkner [aut, cre]
Maintainer: Paul-Christian Bürkner <paul.buerkner@gmail.com>
Diff between brms versions 2.3.0 dated 2018-05-14 and 2.3.1 dated 2018-06-05
DESCRIPTION | 15 - MD5 | 80 +++---- NAMESPACE | 16 + R/brmsfit-methods.R | 16 - R/distributions.R | 283 +++++++++++++++++++++++++ R/family-lists.R | 16 - R/fitted.R | 29 +- R/generics.R | 4 R/log_lik.R | 139 +++--------- R/loo-helpers.R | 11 R/misc.R | 4 R/priors.R | 4 R/stan-helpers.R | 102 +++++---- R/stan-likelihood.R | 36 +-- R/sysdata.rda |binary R/validate.R | 2 inst/chunks/fun_hurdle_gamma.stan | 40 ++- inst/chunks/fun_hurdle_lognormal.stan | 39 ++- inst/chunks/fun_hurdle_negbinomial.stan | 8 inst/chunks/fun_hurdle_poisson.stan | 8 inst/chunks/fun_zero_inflated_beta.stan | 16 - inst/chunks/fun_zero_inflated_binomial.stan | 7 inst/chunks/fun_zero_inflated_negbinomial.stan | 7 inst/chunks/fun_zero_inflated_poisson.stan | 7 inst/chunks/fun_zero_one_inflated_beta.stan | 7 inst/doc/brms_customfamilies.html | 36 +-- inst/doc/brms_distreg.html | 90 +++---- inst/doc/brms_families.html | 4 inst/doc/brms_missings.html | 46 ++-- inst/doc/brms_monotonic.html | 114 +++++----- inst/doc/brms_multilevel.pdf |binary inst/doc/brms_multivariate.html | 108 ++++----- inst/doc/brms_nonlinear.html | 74 +++--- inst/doc/brms_overview.pdf |binary inst/doc/brms_phylogenetics.html | 82 +++---- man/Hurdle.Rd |only man/ZeroInflated.Rd |only man/kfold.Rd | 7 man/stanplot.Rd | 4 tests/testthat/tests.brmsfit-methods.R | 146 ++++++------ tests/testthat/tests.distributions.R | 51 ++++ tests/testthat/tests.make_stancode.R | 2 42 files changed, 1021 insertions(+), 639 deletions(-)
Title: Estimating Infection Rates from Serological Data
Description: Translates antibody levels measured in a (cross-sectional)
population sample into an estimate of the frequency with which
seroconversions (infections) occur in the sampled population.
Author: Peter Teunis [aut] (Author of the method and original code.),
Jan van Eijkeren [aut] (Author of the method and original code.),
Daniel Lewandowski [com, ctb] (Creator of the R package.),
Chantal Quinten [cre, ctb] (Project manager and the package
maintainer.)
Maintainer: Chantal Quinten <seroincidence@ecdc.europa.eu>
Diff between seroincidence versions 1.0.5 dated 2015-12-29 and 2.0.0 dated 2018-06-05
seroincidence-1.0.5/seroincidence/R/campylobacterResponseParams.R |only seroincidence-1.0.5/seroincidence/R/campylobacterSerologyData.R |only seroincidence-1.0.5/seroincidence/R/logRhoCdf.R |only seroincidence-1.0.5/seroincidence/R/logRhoPdf.R |only seroincidence-1.0.5/seroincidence/R/nllGamma.R |only seroincidence-1.0.5/seroincidence/R/rinvgamma.R |only seroincidence-1.0.5/seroincidence/R/salmonellaSerologyData.R |only seroincidence-1.0.5/seroincidence/R/seroincidence.R |only seroincidence-1.0.5/seroincidence/R/simulateSalmonellaResponseParams.R |only seroincidence-1.0.5/seroincidence/R/simulateSerologyData.R |only seroincidence-1.0.5/seroincidence/TODO |only seroincidence-1.0.5/seroincidence/data/campylobacterResponseParams.RData |only seroincidence-1.0.5/seroincidence/data/campylobacterSerologyData.RData |only seroincidence-1.0.5/seroincidence/data/salmonellaSerologyData.RData |only seroincidence-1.0.5/seroincidence/inst/doc/cover.R |only seroincidence-1.0.5/seroincidence/inst/doc/installation.R |only seroincidence-1.0.5/seroincidence/inst/doc/tutorial.R |only seroincidence-1.0.5/seroincidence/man/campylobacterResponseParams.Rd |only seroincidence-1.0.5/seroincidence/man/campylobacterSerologyData.Rd |only seroincidence-1.0.5/seroincidence/man/salmonellaSerologyData.Rd |only seroincidence-1.0.5/seroincidence/man/simulateSalmonellaResponseParams.Rd |only seroincidence-1.0.5/seroincidence/man/simulateSerologyData.Rd |only seroincidence-1.0.5/seroincidence/tests |only seroincidence-1.0.5/seroincidence/vignettes/fig/cutoff-campylobacter-1.png |only seroincidence-1.0.5/seroincidence/vignettes/fig/cutoff-campylobacter-2.png |only seroincidence-1.0.5/seroincidence/vignettes/fig/cutoff-salmonella-1.png |only seroincidence-1.0.5/seroincidence/vignettes/fig/cutoff-salmonella-2.png |only seroincidence-1.0.5/seroincidence/vignettes/fig/delft-cutoff0.png |only seroincidence-1.0.5/seroincidence/vignettes/fig/delft-cutoff05.png |only seroincidence-1.0.5/seroincidence/vignettes/fig/delft-cutoff1.png |only seroincidence-1.0.5/seroincidence/vignettes/fig/delft-cutoff2.png |only seroincidence-1.0.5/seroincidence/vignettes/fig/downloaded.png |only seroincidence-1.0.5/seroincidence/vignettes/fig/ssi-cutoff0.png |only seroincidence-1.0.5/seroincidence/vignettes/fig/ssi-cutoff05.png |only seroincidence-1.0.5/seroincidence/vignettes/fig/ssi-cutoff1.png |only seroincidence-1.0.5/seroincidence/vignettes/fig/ssi-cutoff2.png |only seroincidence-1.0.5/seroincidence/vignettes/fig/startMenu.png |only seroincidence-2.0.0/seroincidence/DESCRIPTION | 39 seroincidence-2.0.0/seroincidence/MD5 | 140 - seroincidence-2.0.0/seroincidence/NAMESPACE | 9 seroincidence-2.0.0/seroincidence/NEWS | 182 - seroincidence-2.0.0/seroincidence/R/data-help.R |only seroincidence-2.0.0/seroincidence/R/deltaFunc.R |only seroincidence-2.0.0/seroincidence/R/densFunc.R |only seroincidence-2.0.0/seroincidence/R/estimateSeroincidence.R | 254 - seroincidence-2.0.0/seroincidence/R/getAdditionalData.R |only seroincidence-2.0.0/seroincidence/R/nll.R | 61 seroincidence-2.0.0/seroincidence/R/nllByType.R |only seroincidence-2.0.0/seroincidence/R/optNll.R |only seroincidence-2.0.0/seroincidence/R/print.seroincidence.R | 87 seroincidence-2.0.0/seroincidence/R/print.summary.seroincidence.R | 81 seroincidence-2.0.0/seroincidence/R/rho-funcs.R |only seroincidence-2.0.0/seroincidence/R/seroincidence-package.R |only seroincidence-2.0.0/seroincidence/R/summary.seroincidence.R | 170 - seroincidence-2.0.0/seroincidence/R/surv.R |only seroincidence-2.0.0/seroincidence/R/tau-funcs.R |only seroincidence-2.0.0/seroincidence/R/utils.R |only seroincidence-2.0.0/seroincidence/README.md | 11 seroincidence-2.0.0/seroincidence/build/vignette.rds |binary seroincidence-2.0.0/seroincidence/data/datalist |only seroincidence-2.0.0/seroincidence/data/responseParams.RData |only seroincidence-2.0.0/seroincidence/data/serologyData.RData |only seroincidence-2.0.0/seroincidence/inst/CITATION | 28 seroincidence-2.0.0/seroincidence/inst/doc/cover.Rmd | 82 seroincidence-2.0.0/seroincidence/inst/doc/cover.html | 250 + seroincidence-2.0.0/seroincidence/inst/doc/installation.Rmd | 349 +- seroincidence-2.0.0/seroincidence/inst/doc/installation.pdf |binary seroincidence-2.0.0/seroincidence/inst/doc/methodology.Rmd | 1040 +++---- seroincidence-2.0.0/seroincidence/inst/doc/methodology.pdf |binary seroincidence-2.0.0/seroincidence/inst/doc/tutorial.Rmd | 1327 +++++----- seroincidence-2.0.0/seroincidence/inst/doc/tutorial.pdf |binary seroincidence-2.0.0/seroincidence/man/campylobacterDelftParams1.Rd |only seroincidence-2.0.0/seroincidence/man/campylobacterDelftParams3.Rd |only seroincidence-2.0.0/seroincidence/man/campylobacterDelftParams4.Rd |only seroincidence-2.0.0/seroincidence/man/campylobacterSSIParams1.Rd |only seroincidence-2.0.0/seroincidence/man/campylobacterSSIParams2.Rd |only seroincidence-2.0.0/seroincidence/man/campylobacterSSIParams4.Rd |only seroincidence-2.0.0/seroincidence/man/campylobacterSimLowData.Rd |only seroincidence-2.0.0/seroincidence/man/estimateSeroincidence.Rd | 71 seroincidence-2.0.0/seroincidence/man/getAdditionalData.Rd |only seroincidence-2.0.0/seroincidence/man/pertussisIgGPTParams1.Rd |only seroincidence-2.0.0/seroincidence/man/pertussisIgGPTParams2.Rd |only seroincidence-2.0.0/seroincidence/man/pertussisIgGPTParams3.Rd |only seroincidence-2.0.0/seroincidence/man/pertussisIgGPTParams4.Rd |only seroincidence-2.0.0/seroincidence/man/print.seroincidence.Rd | 2 seroincidence-2.0.0/seroincidence/man/print.summary.seroincidence.Rd | 2 seroincidence-2.0.0/seroincidence/man/salmonellaSSIParams1.Rd |only seroincidence-2.0.0/seroincidence/man/salmonellaSSIParams2.Rd |only seroincidence-2.0.0/seroincidence/man/salmonellaSSIParams4.Rd |only seroincidence-2.0.0/seroincidence/man/seroincidence.Rd | 21 seroincidence-2.0.0/seroincidence/man/summary.seroincidence.Rd | 31 seroincidence-2.0.0/seroincidence/vignettes/cover.Rmd | 82 seroincidence-2.0.0/seroincidence/vignettes/fig/RGui1.png |binary seroincidence-2.0.0/seroincidence/vignettes/fig/RGui2.png |binary seroincidence-2.0.0/seroincidence/vignettes/fig/RGui3.png |binary seroincidence-2.0.0/seroincidence/vignettes/fig/RGui4.png |binary seroincidence-2.0.0/seroincidence/vignettes/fig/response.pdf |only seroincidence-2.0.0/seroincidence/vignettes/fig/setup1.png |binary seroincidence-2.0.0/seroincidence/vignettes/fig/setup2.png |binary seroincidence-2.0.0/seroincidence/vignettes/fig/setup3.png |binary seroincidence-2.0.0/seroincidence/vignettes/fig/setup4.png |binary seroincidence-2.0.0/seroincidence/vignettes/installation.Rmd | 349 +- seroincidence-2.0.0/seroincidence/vignettes/methodology.Rmd | 1040 +++---- seroincidence-2.0.0/seroincidence/vignettes/tutorial.Rmd | 1327 +++++----- 104 files changed, 3603 insertions(+), 3432 deletions(-)
Title: Multivariate Ordered Probit Model via Pairwise Likelihood
Description: Multivariate ordered probit model, i.e. the extension of the scalar ordered probit model where the observed variables have dimension greater than one. Estimation of the parameters is done via maximization of the pairwise likelihood, a special case of the composite likelihood obtained as product of bivariate marginal distributions. The package uses the Fortran 77 subroutine SADMVN by Alan Genz, with minor adaptations made by Adelchi Azzalini in his "mvnormt" package for evaluating the two-dimensional Gaussian integrals involved in the pairwise log-likelihood. Optimization of the latter objective function is performed via quasi-Newton box-constrained optimization algorithm, as implemented in nlminb.
Author: Euloge Clovis Kenne Pagui [aut,cre], Antonio Canale [aut], Alan Genz [ctb], Adelchi Azzalini [ctb]
Maintainer: Euloge Clovis Kenne Pagui <kenne@stat.unipd.it>
Diff between PLordprob versions 1.0 dated 2014-10-07 and 1.1 dated 2018-06-05
DESCRIPTION | 10 +++++----- MD5 | 9 +++++---- NAMESPACE | 2 +- man/PLordprob-package.Rd | 4 ++-- src/PLordprob_init.c |only src/cat_pair.c | 8 ++++---- 6 files changed, 17 insertions(+), 16 deletions(-)
Title: Brazilian Economic Time Series
Description: It provides access to and information about the most important
Brazilian economic time series - from the Getulio Vargas Foundation <http://portal.fgv.br/en>,
the Central Bank of Brazil <http://www.bcb.gov.br> and the Brazilian Institute of Geography
and Statistics <http://www.ibge.gov.br>. It also presents tools for managing, analysing (e.g.
generating dynamic reports with a complete analysis of a series) and exporting
these time series.
Author: Pedro Costa Ferreira [aut],
Talitha Speranza [aut, cre],
Jonatha Costa [aut],
Fernando Teixeira [ctb],
Daiane Marcolino [ctb]
Maintainer: Talitha Speranza <talitha.speranza@fgv.br>
Diff between BETS versions 0.4.2 dated 2018-05-24 and 0.4.3 dated 2018-06-05
DESCRIPTION | 8 ++++---- MD5 | 13 +++++++------ NAMESPACE | 1 + R/BETSsearch.R | 5 +++-- R/connection.R | 2 +- inst/doc/BETS_basic_usage.html | 4 ++-- inst/key.rds |only man/BETSsearch.Rd | 2 +- 8 files changed, 19 insertions(+), 16 deletions(-)
Title: Common R Scripts and Utilities Used by the Statnet Project
Software
Description: Non-statistical utilities used by the software developed by the Statnet Project. They may also be of use to others.
Author: Pavel N. Krivitsky [aut, cre],
Skye Bender-deMoll [ctb]
Maintainer: Pavel N. Krivitsky <pavel@uow.edu.au>
Diff between statnet.common versions 4.0.0 dated 2017-08-16 and 4.1.2 dated 2018-06-05
DESCRIPTION | 14 +- LICENSE | 2 MD5 | 67 ++++++------ NAMESPACE | 24 ++++ NEWS | 124 ++++++++++++++++++----- NEWS.md |only R/cite.utilities.R | 16 ++ R/control.utilities.R | 4 R/formula.utilities.R | 251 +++++++++++++++++++++++++++++++++++++---------- R/logspace.utils.R | 2 R/mcmc-utils.R |only R/misc.utilities.R | 157 +++++++++++++++++++++++------ R/rle_utils.R | 225 +++++++++++++++++++++++++++++++++--------- R/startup.utilities.R | 2 R/string.utilities.R | 42 ++++++- R/wmatrix.R | 16 +- R/zzz.R | 2 README.md | 1 build/statnet.common.pdf |binary inst/CITATION | 76 +++++--------- man/ERRVL.Rd | 23 +++- man/NVL.Rd | 61 ++++++++--- man/all_identical.Rd | 2 man/as.rle.Rd |only man/despace.Rd |only man/formula.utilities.Rd | 140 ++++++++++++++++++++------ man/logspace.utils.Rd | 3 man/mcmc-utilities.Rd |only man/message_print.Rd |only man/paste.and.Rd | 8 - man/rle.utils.Rd | 120 +++++++++++++++------- man/statnet.cite.Rd | 8 + man/unwhich.Rd |only man/wmatrix.Rd | 10 - man/wmatrix_weights.Rd | 4 src/init.c | 2 src/logspace_utils.c | 4 src/rle_utils.c | 2 38 files changed, 1040 insertions(+), 372 deletions(-)
More information about statnet.common at CRAN
Permanent link
Title: Classes and Methods for Spatial Data
Description: Classes and methods for spatial
data; the classes document where the spatial location information
resides, for 2D or 3D data. Utility functions are provided, e.g. for
plotting data as maps, spatial selection, as well as methods for
retrieving coordinates, for subsetting, print, summary, etc.
Author: Edzer Pebesma [aut, cre],
Roger Bivand [aut],
Barry Rowlingson [ctb],
Virgilio Gomez-Rubio [ctb],
Robert Hijmans [ctb],
Michael Sumner [ctb],
Don MacQueen [ctb],
Jim Lemon [ctb],
Josh O'Brien [ctb],
Joseph O'Rourke [ctb]
Maintainer: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Diff between sp versions 1.2-7 dated 2018-01-19 and 1.3-1 dated 2018-06-05
DESCRIPTION | 6 +++--- MD5 | 30 +++++++++++++++--------------- R/SpatialPolygons-methods.R | 3 ++- R/SpatialPolygonsDataFrame-methods.R | 6 ++++-- R/image.R | 5 +++-- build/vignette.rds |binary inst/doc/csdacm.pdf |binary inst/doc/intro_sp.pdf |binary inst/doc/over.pdf |binary inst/include/sp.h | 2 +- inst/include/sp_xports.c | 19 ++++++++++++------- man/image.Rd | 5 +++-- man/panel.Rd | 2 +- man/spplot.Rd | 2 +- src/sp.h | 2 +- src/sp_xports.c | 19 ++++++++++++------- 16 files changed, 58 insertions(+), 43 deletions(-)
Title: Fuzzy Measure Tools
Description: Various tools for handling fuzzy measures, calculating Shapley value and interaction index, Choquet and Sugeno integrals, as well as fitting fuzzy measures to empirical data are provided. Construction of fuzzy measures from empirical data is done by solving a linear programming problem by using 'lpsolve' package, whose source in C adapted to the R environment
is included. The description of the basic theory of fuzzy measures is in the manual in the Doc folder in this package.
Author: Gleb Beliakov [aut, cre],
Quan Vu [ctb],
Andrei Kelarev [ctb],
Michel Berkelaar [ctb],
Kjell Eikland [ctb],
Samuel E. Buttrey [ctb],
Stefan I. Larimore [ctb],
Timothy A. Davis [ctb],
John Gilbert [ctb],
Esmond Ng [ctb],
Peter Notebaert [ctb],
Richard Stallman [ctb],
Jeroen Dirks [ctb]
Maintainer: Gleb Beliakov <gleb@deakin.edu.au>
Diff between Rfmtool versions 2.0.0 dated 2018-03-03 and 3.0.0 dated 2018-06-05
DESCRIPTION | 8 MD5 | 51 ++- NAMESPACE | 9 R/Rfmtool.r | 467 +++++++++++++++++++++++++----- inst/doc/Rfmtool_manual.pdf |binary man/fm.Bipartition.Rd |only man/fm.BipartitionBanzhaf.Rd |only man/fm.IsMeasureSymmetric.Rd | 108 +++---- man/fm.NonadditivityIndex.Rd |only man/fm.NonadditivityIndexMob.Rd |only man/fm.fittingKinteractive.Rd |only man/fm.fittingKinteractiveAuto.Rd |only man/fm.fittingKinteractiveMC.Rd |only man/fm.fittingKinteractiveMarginal.Rd |only man/fm.fittingKinteractiveMarginalMC.Rd |only man/fm.fittingKmaxitive.Rd | 164 +++++----- src/colamd.c | 5 src/commonlib.c | 7 src/fuzzymeasurefit.cpp | 92 +++--- src/fuzzymeasurefit.h | 36 +- src/fuzzymeasurefit3.cpp |only src/fuzzymeasuretools.cpp | 471 ++++++++++++++++++++++++++----- src/fuzzymeasuretools.h | 104 ++++-- src/lp_etaPFI.h |only src/lp_lib.c | 5 src/lp_report.c | 7 src/lp_utils.c | 8 src/lusol.c | 7 src/lusolio.c | 7 src/mmio.c | 6 src/sparselib.c | 6 src/wrapper.cpp | 486 +++++++++++++++++++++++--------- 32 files changed, 1511 insertions(+), 543 deletions(-)
Title: An 'API' Client for the 'Alteryx' Gallery
Description: A tool to access each of the 'Alteryx' Gallery 'API' endpoints.
Users can queue jobs, poll job status, and retrieve application output as
a data frame. You will need an 'Alteryx' Server license and have 'Alteryx'
Gallery running to utilize this package. The 'API' is accessed through the
'URL' that you setup for the server running 'Alteryx' Gallery and more
information on the endpoints can be found at
<https://gallery.alteryx.com/api-docs/>.
Author: Michael Treadwell
Maintainer: Michael Treadwell <michael.treadwell@interworks.com>
Diff between alterryx versions 0.3.0 dated 2017-11-01 and 0.3.1 dated 2018-06-05
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- NEWS.md | 7 +++++++ R/alteryx_job.R | 3 ++- R/request.R | 1 + R/signature.R | 12 ++++++++---- inst/doc/using_alterryx.html | 4 ++-- man/encode_list.Rd | 5 ++++- 8 files changed, 34 insertions(+), 18 deletions(-)
Title: Bayesian Modelling of Raman Spectroscopy
Description: Sequential Monte Carlo (SMC) algorithms for fitting a generalised additive
mixed model (GAMM) to surface-enhanced resonance Raman spectroscopy (SERRS),
using the method of Moores et al. (2016) <arXiv:1604.07299>. Multivariate
observations of SERRS are highly collinear and lend themselves to a reduced-rank
representation. The GAMM separates the SERRS signal into three components: a
sequence of Lorentzian, Gaussian, or pseudo-Voigt peaks; a smoothly-varying baseline;
and additive white noise. The parameters of each component of the model are estimated
iteratively using SMC. The posterior distributions of the parameters given the observed
spectra are represented as a population of weighted particles.
Author: Matt Moores [aut, cre] (<https://orcid.org/0000-0003-4531-3572>),
Jake Carson [aut],
Mark Girolami [aut],
Engineering and Physical Sciences Research Council [fnd] (EPSRC
programme grant ref: EP/L014165/1),
University of Warwick [cph]
Maintainer: Matt Moores <mmoores@gmail.com>
Diff between serrsBayes versions 0.3-12 dated 2018-02-18 and 0.3-13 dated 2018-06-05
DESCRIPTION | 17 MD5 | 17 NEWS.md | 6 README.md | 50 + inst/doc/Introduction.R | 24 inst/doc/Introduction.Rmd | 26 inst/doc/Introduction.html | 1187 +++++++++++++++------------------------ inst/image/README-logo.png |only inst/image/README-plotting-1.png |binary vignettes/Introduction.Rmd | 26 10 files changed, 588 insertions(+), 765 deletions(-)
Title: Non-Negative and Sparse PCA
Description: Two methods for performing a constrained principal
component analysis (PCA), where non-negativity and/or sparsity
constraints are enforced on the principal axes (PAs). The
function 'nsprcomp' computes one principal component (PC) after
the other. Each PA is optimized such that the corresponding PC
has maximum additional variance not explained by the previous
components. In contrast, the function 'nscumcomp' jointly
computes all PCs such that the cumulative variance is maximal.
Both functions have the same interface as the 'prcomp' function
from the 'stats' package (plus some extra parameters), and both
return the result of the analysis as an object of class
'nsprcomp', which inherits from 'prcomp'. See
<https://sigg-iten.ch/learningbits/2013/05/27/nsprcomp-is-on-cran/>
and Sigg et al. (2008) <doi:10.1145/1390156.1390277> for more
details.
Author: Christian Sigg [aut, cre] (<https://orcid.org/0000-0003-1067-9224>),
R Core team [ctb] (prcomp interface, formula implementation and
documentation)
Maintainer: Christian Sigg <christian@sigg-iten.ch>
Diff between nsprcomp versions 0.5 dated 2014-07-17 and 0.5.1-2 dated 2018-06-05
nsprcomp-0.5.1-2/nsprcomp/DESCRIPTION | 51 +-- nsprcomp-0.5.1-2/nsprcomp/MD5 | 34 +- nsprcomp-0.5.1-2/nsprcomp/NAMESPACE | 9 nsprcomp-0.5.1-2/nsprcomp/R/nscumcomp.R | 12 nsprcomp-0.5.1-2/nsprcomp/R/nsprcomp-package.r |only nsprcomp-0.5.1-2/nsprcomp/R/nsprcomp.R | 14 nsprcomp-0.5.1-2/nsprcomp/README.md | 32 - nsprcomp-0.5.1-2/nsprcomp/inst/CITATION | 4 nsprcomp-0.5.1-2/nsprcomp/inst/atexample |only nsprcomp-0.5.1-2/nsprcomp/man/asdev.Rd | 54 +-- nsprcomp-0.5.1-2/nsprcomp/man/cardinality.Rd | 6 nsprcomp-0.5.1-2/nsprcomp/man/nscumcomp.Rd | 121 +++---- nsprcomp-0.5.1-2/nsprcomp/man/nsprcomp.Rd | 162 +++++----- nsprcomp-0.5.1-2/nsprcomp/man/peav.Rd | 24 - nsprcomp-0.5.1-2/nsprcomp/tests/run-all.R | 10 nsprcomp-0.5.1-2/nsprcomp/tests/testthat/test_nsprcomp_nspca.R | 4 nsprcomp-0.5.1-2/nsprcomp/tests/testthat/test_nsprcomp_spca.R | 4 nsprcomp-0.5/nsprcomp/R/nsprcomp-package.R |only nsprcomp-0.5/nsprcomp/inst/nscumcomp_examples.R |only nsprcomp-0.5/nsprcomp/inst/nsprcomp_examples.R |only 20 files changed, 281 insertions(+), 260 deletions(-)
Title: Time-Varying Coefficients Linear Regression for Single and
Multiple Equations
Description: Fitting time-varying coefficient models both for single and multi-equation regressions, using kernel smoothing techniques.
Author: Isabel Casas and Ruben Fernandez-Casal
Maintainer: Isabel Casas <casasis@gmail.com>
Diff between tvReg versions 0.2.1 dated 2017-11-27 and 0.3.0 dated 2018-06-05
tvReg-0.2.1/tvReg/R/ci.R |only tvReg-0.2.1/tvReg/R/plot_tvsystem.R |only tvReg-0.2.1/tvReg/man/CI.Rd |only tvReg-0.3.0/tvReg/DESCRIPTION | 12 tvReg-0.3.0/tvReg/MD5 | 92 +- tvReg-0.3.0/tvReg/NAMESPACE | 105 +-- tvReg-0.3.0/tvReg/R/bw.R | 527 +++++++-------- tvReg-0.3.0/tvReg/R/confint_tvReg.R |only tvReg-0.3.0/tvReg/R/data.R | 94 ++ tvReg-0.3.0/tvReg/R/deprecated_tvReg.R |only tvReg-0.3.0/tvReg/R/methods_tvReg.R |only tvReg-0.3.0/tvReg/R/plot_tvReg.R |only tvReg-0.3.0/tvReg/R/print_tvReg.R |only tvReg-0.3.0/tvReg/R/summary_tvReg.R |only tvReg-0.3.0/tvReg/R/tvAR.R | 95 +- tvReg-0.3.0/tvReg/R/tvBOOT.R | 9 tvReg-0.3.0/tvReg/R/tvCov.R | 32 tvReg-0.3.0/tvReg/R/tvGLS.R | 685 ++++++++++---------- tvReg-0.3.0/tvReg/R/tvIRF.R | 91 +- tvReg-0.3.0/tvReg/R/tvLM.R | 256 +++---- tvReg-0.3.0/tvReg/R/tvOLS.R | 238 +++---- tvReg-0.3.0/tvReg/R/tvSURE.R | 48 - tvReg-0.3.0/tvReg/R/tvVAR.R | 34 - tvReg-0.3.0/tvReg/build/vignette.rds |binary tvReg-0.3.0/tvReg/data/RV.rdata |only tvReg-0.3.0/tvReg/inst/CITATION | 20 tvReg-0.3.0/tvReg/inst/doc/tvReg-vignette.R | 10 tvReg-0.3.0/tvReg/inst/doc/tvReg-vignette.Rmd | 845 ++++++++++++------------- tvReg-0.3.0/tvReg/inst/doc/tvReg-vignette.html | 22 tvReg-0.3.0/tvReg/man/CEES.Rd | 62 - tvReg-0.3.0/tvReg/man/FF5F.Rd | 141 ++-- tvReg-0.3.0/tvReg/man/RV.Rd |only tvReg-0.3.0/tvReg/man/bw.Rd | 140 ++-- tvReg-0.3.0/tvReg/man/bwCov.Rd | 72 +- tvReg-0.3.0/tvReg/man/confint.tvReg.Rd |only tvReg-0.3.0/tvReg/man/methods.tvReg.Rd |only tvReg-0.3.0/tvReg/man/plot.tvReg.Rd | 121 +-- tvReg-0.3.0/tvReg/man/print.tvReg.Rd |only tvReg-0.3.0/tvReg/man/summary.tvReg.Rd |only tvReg-0.3.0/tvReg/man/tvAR.Rd | 307 ++++----- tvReg-0.3.0/tvReg/man/tvAcoef.Rd | 64 - tvReg-0.3.0/tvReg/man/tvBcoef.Rd | 68 +- tvReg-0.3.0/tvReg/man/tvCov.Rd | 101 +- tvReg-0.3.0/tvReg/man/tvGLS.Rd | 172 ++--- tvReg-0.3.0/tvReg/man/tvIRF.Rd | 158 ++-- tvReg-0.3.0/tvReg/man/tvLM.Rd | 230 +++--- tvReg-0.3.0/tvReg/man/tvOLS.Rd | 96 +- tvReg-0.3.0/tvReg/man/tvPhi.Rd | 44 - tvReg-0.3.0/tvReg/man/tvPsi.Rd | 68 +- tvReg-0.3.0/tvReg/man/tvReg-deprecated.Rd |only tvReg-0.3.0/tvReg/man/tvReg-internals.Rd | 148 ++-- tvReg-0.3.0/tvReg/man/tvSURE.Rd | 311 ++++----- tvReg-0.3.0/tvReg/man/tvVAR.Rd | 143 ++-- tvReg-0.3.0/tvReg/man/update.tvReg.Rd | 72 +- tvReg-0.3.0/tvReg/vignettes/tvReg-vignette.Rmd | 845 ++++++++++++------------- 55 files changed, 3430 insertions(+), 3148 deletions(-)
Title: A Toolkit for Recursive Partytioning
Description: A toolkit with infrastructure for representing, summarizing, and
visualizing tree-structured regression and classification models. This
unified infrastructure can be used for reading/coercing tree models from
different sources ('rpart', 'RWeka', 'PMML') yielding objects that share
functionality for print()/plot()/predict() methods. Furthermore, new and improved
reimplementations of conditional inference trees (ctree()) and model-based
recursive partitioning (mob()) from the 'party' package are provided based
on the new infrastructure. A description of this package was published
by Hothorn and Zeileis (2015) <http://jmlr.org/papers/v16/hothorn15a.html>.
Author: Torsten Hothorn [aut, cre] (<https://orcid.org/0000-0001-8301-0471>),
Heidi Seibold [ctb] (<https://orcid.org/0000-0002-8960-9642>),
Achim Zeileis [aut] (<https://orcid.org/0000-0003-0918-3766>)
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between partykit versions 1.2-1 dated 2018-04-20 and 1.2-2 dated 2018-06-05
DESCRIPTION | 13 ++-- MD5 | 61 ++++++++++---------- NAMESPACE | 5 + R/modelparty.R | 51 ++++++++--------- R/zzz.R |only build/vignette.rds |binary data/HuntingSpiders.rda |binary data/WeatherPlay.rda |binary inst/NEWS.Rd | 17 +++++ inst/doc/constparty.pdf |binary inst/doc/ctree.pdf |binary inst/doc/mob.Rnw | 1 inst/doc/mob.pdf |binary inst/doc/partykit.pdf |binary man/prune.modelparty.Rd | 66 ++++++++++++++-------- tests/Examples/partykit-Ex.Rout.save | 103 ++++++++++++++++------------------- tests/bugfixes.Rout.save | 5 - tests/foo.txt |only tests/regtest-MIA.Rout.save | 5 - tests/regtest-cforest.Rout.save | 5 - tests/regtest-ctree.Rout.save | 5 - tests/regtest-glmtree.R | 17 +++++ tests/regtest-glmtree.Rout.save |only tests/regtest-nmax.Rout.save | 5 - tests/regtest-node.Rout.save | 5 - tests/regtest-party.Rout.save | 77 ++++++++++++-------------- tests/regtest-split.Rout.save | 5 - tests/regtest-weights.Rout.save | 5 - vignettes/constparty.Rout.save | 3 - vignettes/ctree.Rout.save | 100 +++++++++++++++------------------ vignettes/mob.Rnw | 1 vignettes/mob.Rout.save | 10 --- vignettes/partykit.Rout.save | 4 + 33 files changed, 300 insertions(+), 269 deletions(-)
Title: A Lending Club API Wrapper
Description: Functions to access Lending Club's API and assist the investor manage
their account. Lending Club is a peer-to-peer lending service where loans are
broken up into $25 notes that investors buy with the expectation of earning a
return on the interest. You can learn more about the API here:
<http://www.lendingclub.com/developers/lc-api.action>.
Author: Ryan Kuhn [aut, cre] (<https://orcid.org/0000-0001-6827-3492>)
Maintainer: Ryan Kuhn <kuhnrl30@gmail.com>
Diff between LendingClub versions 1.0.4 dated 2018-01-29 and 2.0.0 dated 2018-06-05
LendingClub-1.0.4/LendingClub/R/AccountSummary_.R |only LendingClub-1.0.4/LendingClub/R/AddFunds.R |only LendingClub-1.0.4/LendingClub/R/AvailableCash.R |only LendingClub-1.0.4/LendingClub/R/CancelTransfer.R |only LendingClub-1.0.4/LendingClub/R/CreatePortfolio.R |only LendingClub-1.0.4/LendingClub/R/Dashboard.R |only LendingClub-1.0.4/LendingClub/R/DetailedNotesOwned.R |only LendingClub-1.0.4/LendingClub/R/ListedLoans.R |only LendingClub-1.0.4/LendingClub/R/MakeCredential.R |only LendingClub-1.0.4/LendingClub/R/NotesOwned.R |only LendingClub-1.0.4/LendingClub/R/PendingTransfers.R |only LendingClub-1.0.4/LendingClub/R/PortfoliosOwned.R |only LendingClub-1.0.4/LendingClub/R/SubmitOrder.R |only LendingClub-1.0.4/LendingClub/R/WithdrawFunds.R |only LendingClub-1.0.4/LendingClub/man/AccountSummary_.Rd |only LendingClub-1.0.4/LendingClub/man/AddFunds.Rd |only LendingClub-1.0.4/LendingClub/man/AvailableCash.Rd |only LendingClub-1.0.4/LendingClub/man/CancelTransfer.Rd |only LendingClub-1.0.4/LendingClub/man/CreatePortfolio.Rd |only LendingClub-1.0.4/LendingClub/man/Dashboard.Rd |only LendingClub-1.0.4/LendingClub/man/ListedLoans.Rd |only LendingClub-1.0.4/LendingClub/man/MakeCredential.Rd |only LendingClub-1.0.4/LendingClub/man/NotesOwned.Rd |only LendingClub-1.0.4/LendingClub/man/PendingTransfers.Rd |only LendingClub-1.0.4/LendingClub/man/PortfoliosOwned.Rd |only LendingClub-1.0.4/LendingClub/man/SubmitOrder.Rd |only LendingClub-1.0.4/LendingClub/man/WithdrawFunds.Rd |only LendingClub-2.0.0/LendingClub/DESCRIPTION | 12 - LendingClub-2.0.0/LendingClub/MD5 | 116 +++++----- LendingClub-2.0.0/LendingClub/NAMESPACE | 18 + LendingClub-2.0.0/LendingClub/NEWS.md | 26 +- LendingClub-2.0.0/LendingClub/R/AccountSummary.R | 4 LendingClub-2.0.0/LendingClub/R/CheckCred.R | 36 +-- LendingClub-2.0.0/LendingClub/R/FolioBuy.R | 52 ++-- LendingClub-2.0.0/LendingClub/R/FolioListing.R | 61 ++++- LendingClub-2.0.0/LendingClub/R/FolioOrders.R |only LendingClub-2.0.0/LendingClub/R/FolioSell.R | 91 ++++--- LendingClub-2.0.0/LendingClub/R/LC_GET.R | 98 ++++---- LendingClub-2.0.0/LendingClub/R/LendingClub-deprecated.R | 35 ++- LendingClub-2.0.0/LendingClub/R/LendingClub.R | 3 LendingClub-2.0.0/LendingClub/R/Print.R | 6 LendingClub-2.0.0/LendingClub/R/lc_AccountSummary.R |only LendingClub-2.0.0/LendingClub/R/lc_AddFunds.R |only LendingClub-2.0.0/LendingClub/R/lc_AvailableCash.R |only LendingClub-2.0.0/LendingClub/R/lc_CancelTransfer.R |only LendingClub-2.0.0/LendingClub/R/lc_CreatePortfolio.R |only LendingClub-2.0.0/LendingClub/R/lc_Dashboard.R |only LendingClub-2.0.0/LendingClub/R/lc_DetailedNotesOwned.R |only LendingClub-2.0.0/LendingClub/R/lc_ListedLoans.R |only LendingClub-2.0.0/LendingClub/R/lc_MakeCredential.R |only LendingClub-2.0.0/LendingClub/R/lc_NotesOwned.R |only LendingClub-2.0.0/LendingClub/R/lc_PendingTransfers.R |only LendingClub-2.0.0/LendingClub/R/lc_PortfoliosOwned.R |only LendingClub-2.0.0/LendingClub/R/lc_SubmitOrder.R |only LendingClub-2.0.0/LendingClub/R/lc_WithdrawFunds.R |only LendingClub-2.0.0/LendingClub/R/lc_helpers.R |only LendingClub-2.0.0/LendingClub/R/summmary.R | 13 - LendingClub-2.0.0/LendingClub/README.md | 35 +-- LendingClub-2.0.0/LendingClub/build/vignette.rds |binary LendingClub-2.0.0/LendingClub/inst/CITATION | 3 LendingClub-2.0.0/LendingClub/inst/Dashboard.Rmd | 24 +- LendingClub-2.0.0/LendingClub/inst/doc/LendingClub.R | 22 - LendingClub-2.0.0/LendingClub/inst/doc/LendingClub.Rmd | 32 +- LendingClub-2.0.0/LendingClub/inst/doc/LendingClub.html | 46 ++- LendingClub-2.0.0/LendingClub/man/AccountSummary.Rd | 5 LendingClub-2.0.0/LendingClub/man/FolioListing.Rd | 22 + LendingClub-2.0.0/LendingClub/man/FolioOrders.Rd |only LendingClub-2.0.0/LendingClub/man/FolioSell.Rd | 17 - LendingClub-2.0.0/LendingClub/man/LendingClub-deprecated.Rd | 45 +++ LendingClub-2.0.0/LendingClub/man/lc_AccountSummary.Rd |only LendingClub-2.0.0/LendingClub/man/lc_AddFunds.Rd |only LendingClub-2.0.0/LendingClub/man/lc_AvailableCash.Rd |only LendingClub-2.0.0/LendingClub/man/lc_CancelTransfer.Rd |only LendingClub-2.0.0/LendingClub/man/lc_CreatePortfolio.Rd |only LendingClub-2.0.0/LendingClub/man/lc_Dashboard.Rd |only LendingClub-2.0.0/LendingClub/man/lc_ListedLoans.Rd |only LendingClub-2.0.0/LendingClub/man/lc_MakeCredential.Rd |only LendingClub-2.0.0/LendingClub/man/lc_NotesOwned.Rd |only LendingClub-2.0.0/LendingClub/man/lc_PendingTransfers.Rd |only LendingClub-2.0.0/LendingClub/man/lc_PortfoliosOwned.Rd |only LendingClub-2.0.0/LendingClub/man/lc_SubmitOrder.Rd |only LendingClub-2.0.0/LendingClub/man/lc_WithdrawFunds.Rd |only LendingClub-2.0.0/LendingClub/man/print.LendingClub_credential.Rd | 2 LendingClub-2.0.0/LendingClub/man/summary.holdings.Rd | 11 LendingClub-2.0.0/LendingClub/tests |only LendingClub-2.0.0/LendingClub/vignettes/LendingClub.Rmd | 32 +- 86 files changed, 530 insertions(+), 337 deletions(-)
Title: Acceptance Sampling Ideas Originated by H.F. Dodge
Description: A variety of sampling plans are able to be compared using evaluations of their operating characteristics (OC), average outgoing quality (OQ), average total inspection (ATI) etc.
Author: A. Jonathan R. Godfrey [aut, cre],
K. Govindaraju [aut]
Maintainer: A. Jonathan R. Godfrey <a.j.godfrey@massey.ac.nz>
Diff between Dodge versions 0.8 dated 2013-09-18 and 0.9-2 dated 2018-06-05
Dodge-0.8/Dodge/R/Acceptance.r |only Dodge-0.8/Dodge/R/Chain.r |only Dodge-0.8/Dodge/R/Curtailed.r |only Dodge-0.8/Dodge/R/Double.r |only Dodge-0.8/Dodge/R/LSP.R |only Dodge-0.8/Dodge/R/Sequential.r |only Dodge-0.8/Dodge/R/Single.r |only Dodge-0.8/Dodge/R/VSP.r |only Dodge-0.8/Dodge/R/lot.r |only Dodge-0.8/Dodge/man/ChainSamplingPlans.Rd |only Dodge-0.8/Dodge/man/CurtASN.Rd |only Dodge-0.8/Dodge/man/DoubleSamplingPlans.Rd |only Dodge-0.8/Dodge/man/SeqDesign.Rd |only Dodge-0.8/Dodge/man/Sequential.Rd |only Dodge-0.8/Dodge/man/SingleSamplingPlanDesign.Rd |only Dodge-0.8/Dodge/man/SingleSamplingPlans.Rd |only Dodge-0.8/Dodge/man/VariableSamplingPlans.Rd |only Dodge-0.9-2/Dodge/DESCRIPTION | 22 ++++++---- Dodge-0.9-2/Dodge/MD5 | 52 ++++++++++++------------ Dodge-0.9-2/Dodge/NAMESPACE | 40 ++++++++++++++++++ Dodge-0.9-2/Dodge/NEWS.md |only Dodge-0.9-2/Dodge/R/Acceptance.R |only Dodge-0.9-2/Dodge/R/Chain.R |only Dodge-0.9-2/Dodge/R/Curtailed.R |only Dodge-0.9-2/Dodge/R/Dodge-package.R |only Dodge-0.9-2/Dodge/R/Double.R |only Dodge-0.9-2/Dodge/R/Sequential.R |only Dodge-0.9-2/Dodge/R/Single.R |only Dodge-0.9-2/Dodge/R/VSP.R |only Dodge-0.9-2/Dodge/R/lot.R |only Dodge-0.9-2/Dodge/README.md |only Dodge-0.9-2/Dodge/inst/CITATION | 8 +-- Dodge-0.9-2/Dodge/man/ChainBinomial.Rd |only Dodge-0.9-2/Dodge/man/CurtBinomial.Rd |only Dodge-0.9-2/Dodge/man/DSPlanBinomial.Rd |only Dodge-0.9-2/Dodge/man/Dodge-package.Rd | 28 +++++------- Dodge-0.9-2/Dodge/man/LSP.Rd | 43 ++++++++++++------- Dodge-0.9-2/Dodge/man/SSPDesignBinomial.Rd |only Dodge-0.9-2/Dodge/man/SSPlanBinomial.Rd |only Dodge-0.9-2/Dodge/man/SeqDesignBinomial.Rd |only Dodge-0.9-2/Dodge/man/SequentialBinomial.Rd |only Dodge-0.9-2/Dodge/man/VSPDesign.Rd | 33 +++++++++------ Dodge-0.9-2/Dodge/man/VSPKnown.Rd |only Dodge-0.9-2/Dodge/man/plot.AccSampPlan.Rd | 39 +++++++++--------- Dodge-0.9-2/Dodge/man/print.AccSampPlan.Rd | 36 +++++++--------- 45 files changed, 178 insertions(+), 123 deletions(-)
Title: Improved Access for Blind Users
Description: Blind users do not have access to the graphical output from R
without printing the content of graphics windows to an embosser of some kind. This
is not as immediate as is required for efficient access to statistical output.
The functions here are created so that blind people can make even better use
of R. This includes the text descriptions of graphs, convenience functions
to replace the functionality offered in many GUI front ends, and experimental
functionality for optimising graphical content to prepare it for embossing as
tactile images.
Author: A. Jonathan R. Godfrey [aut, cre],
Debra Warren [aut],
Donal Fitzpatrick [ctb],
Duncan Murdoch [ctb],
Greg Snow [ctb],
Henrik Bengtsson [ctb],
James Curtis [ctb],
JooYoung Seo [ctb],
Marshall Flax [ctb],
Paul Murrell [aut],
Timothy Bilton [aut],
Tony Hirst [ctb],
Tsan-Kuang Lee [ctb],
Volker Sorge [aut],
Yihui Xie [ctb]
Maintainer: A. Jonathan R. Godfrey <a.j.godfrey@massey.ac.nz>
Diff between BrailleR versions 0.26.0 dated 2017-07-08 and 0.28.0 dated 2018-06-05
DESCRIPTION | 38 MD5 | 136 + NAMESPACE | 11 NEWS.md |only R/AddXMLInternal.R | 124 + R/AddXMLMethod.R | 43 R/BrailleRUsefulLinks.R | 14 R/BrowseSVG.R | 10 R/GetExampleText.R |only R/GetWriteR.R | 140 + R/MakeAccessibleSVGMethod.R | 14 R/MakeBatch.R | 8 R/Options.R | 30 R/ProcessAll.R | 21 R/R2txtJG.R | 98 - R/Require.R |only R/SVGThis.R | 61 R/ScatterPlot.R | 2 R/SpellCheckFiles.R | 2 R/TextStrings.R | 2 R/UniDesc.R | 11 R/UpdateGraph.R | 2 R/VIInternals.R |only R/VIMethod3_TH.R | 620 ++++++++ R/WriteR.R | 21 R/pdf2html.R |only inst/NEWS | 33 inst/Python/Python27 |only inst/Python/WriteR/EditMenuEvents.pyc |binary inst/Python/WriteR/HelpMenuEvents.pyc |binary inst/Python/WriteR/MathInserts.pyc |binary inst/Python/WriteR/MyConsole.pyc |only inst/Python/WriteR/RMarkdownEvents.pyc |binary inst/Python/WriteR/WriteR.pyw | 349 +++- inst/Python/WriteR/nope.wav |only inst/Python/latin2html.py |only inst/Templates/BasicSummaryStats.R |only inst/Templates/NormalityTests.R |only inst/Templates/WriteROptions |only inst/Templates/YAMLHeader.Rmd |only inst/Templates/packages.R |only inst/doc/BrailleRHistory.html | 370 ++++- inst/doc/Ex1histograms.html | 421 ++++- inst/doc/Ex2BasicNumerical.html | 322 ++++ inst/doc/Ex3UnivariateDescription.html | 320 ++++ inst/doc/Ex4SingleResponseOneGroupingFactor.html | 320 ++++ inst/doc/GettingStarted.html | 330 ++++ inst/doc/IntroWriteR.html | 220 +++ inst/doc/qplot.R | 53 inst/doc/qplot.Rmd | 56 inst/doc/qplot.html | 1616 +++++++++-------------- inst/whisker |only man/AddXMLMethod.Rd | 2 man/BrailleR-package.Rd | 4 man/BrailleRUsefulLinks.Rd | 4 man/GetExampleText.Rd |only man/GetWriteR.Rd | 11 man/MakeAccessibleSVGMethod.Rd | 3 man/MakeAllFormats.Rd | 5 man/MakeBatch.Rd | 2 man/MakeRmdFiles.Rd | 4 man/OneFactor.Rd | 2 man/OnePredictor.Rd | 5 man/Require.Rd |only man/SVGThis.Rd | 14 man/SetOptions.Rd | 6 man/SpellCheckFiles.Rd | 2 man/UniDesc.Rd | 4 man/VI.Rd | 4 man/VI.ggplot.Rd | 25 man/grep.VIgraph.Rd |only man/pdf2html.Rd |only man/sort.VIgraph.Rd |only man/unfinished.Rd | 2 tests |only vignettes/WriteROptions |only vignettes/qplot.Rmd | 56 77 files changed, 4266 insertions(+), 1707 deletions(-)
Title: Supporting Graphs for Analysing Time Series
Description: Provides 'ggplot2' graphics for analysing time series data. It aims
to fit into the 'tidyverse' and grammar of graphics framework for handling
temporal data.
Author: Earo Wang [aut, cre] (<https://orcid.org/0000-0001-6448-5260>),
Di Cook [aut, ths] (<https://orcid.org/0000-0002-3813-7155>),
Rob Hyndman [aut, ths] (<https://orcid.org/0000-0002-2140-5352>)
Maintainer: Earo Wang <earo.wang@gmail.com>
Diff between sugrrants versions 0.1.1 dated 2017-11-10 and 0.1.2 dated 2018-06-05
sugrrants-0.1.1/sugrrants/R/imports.R |only sugrrants-0.1.1/sugrrants/R/utilities-rlang.R |only sugrrants-0.1.1/sugrrants/R/utilities.R |only sugrrants-0.1.2/sugrrants/DESCRIPTION | 30 sugrrants-0.1.2/sugrrants/MD5 | 40 - sugrrants-0.1.2/sugrrants/NAMESPACE | 27 sugrrants-0.1.2/sugrrants/NEWS.md | 9 sugrrants-0.1.2/sugrrants/R/frame-calendar.R | 458 +++++------ sugrrants-0.1.2/sugrrants/R/geom-acf.R | 34 sugrrants-0.1.2/sugrrants/R/stat-acf.R | 33 sugrrants-0.1.2/sugrrants/R/sugrrants-pkg.R |only sugrrants-0.1.2/sugrrants/R/utils.R |only sugrrants-0.1.2/sugrrants/README.md | 124 ++- sugrrants-0.1.2/sugrrants/build/vignette.rds |binary sugrrants-0.1.2/sugrrants/inst/doc/frame-calendar.R | 13 sugrrants-0.1.2/sugrrants/inst/doc/frame-calendar.Rmd | 15 sugrrants-0.1.2/sugrrants/inst/doc/frame-calendar.html | 583 ++++++++++----- sugrrants-0.1.2/sugrrants/man/figure/calendar-plot-1.png |binary sugrrants-0.1.2/sugrrants/man/frame-calendar.Rd | 84 +- sugrrants-0.1.2/sugrrants/man/stat_acf.Rd | 28 sugrrants-0.1.2/sugrrants/man/sugrrants-geom.Rd | 29 sugrrants-0.1.2/sugrrants/man/sugrrants-package.Rd |only sugrrants-0.1.2/sugrrants/tests/testthat/test-calendar.R | 61 + sugrrants-0.1.2/sugrrants/vignettes/frame-calendar.Rmd | 15 24 files changed, 930 insertions(+), 653 deletions(-)
Title: An API Generator for R
Description: Gives the ability to automatically generate and serve an HTTP API
from R functions using the annotations in the R documentation around your
functions.
Author: Trestle Technology, LLC [aut],
Jeff Allen [cre],
Frans van Dunné [ctb],
Sebastiaan Vandewoude [ctb],
SmartBear Software [ctb, cph] (swagger-ui)
Maintainer: Jeff Allen <cran@trestletech.com>
Diff between plumber versions 0.4.4 dated 2017-12-01 and 0.4.6 dated 2018-06-05
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Title: Tools for Analyzing Mixed Effect Regression Models
Description: Provides methods for extracting results from mixed-effect model
objects fit with the 'lme4' package. Allows construction of prediction intervals
efficiently from large scale linear and generalized linear mixed-effects models.
Author: Jared E. Knowles [aut, cre],
Carl Frederick [aut],
Alex Whitworth [ctb]
Maintainer: Jared E. Knowles <jknowles@gmail.com>
Diff between merTools versions 0.3.0 dated 2016-12-12 and 0.4.1 dated 2018-06-05
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merTools-0.4.1/merTools/R/merTools-package.r | 2 merTools-0.4.1/merTools/R/subBoot.R | 6 merTools-0.4.1/merTools/R/zzz.R | 123 + merTools-0.4.1/merTools/README.md | 454 ++++--- merTools-0.4.1/merTools/build/vignette.rds |binary merTools-0.4.1/merTools/inst/doc/Using_predictInterval.R | 67 - merTools-0.4.1/merTools/inst/doc/Using_predictInterval.Rmd | 326 +++-- merTools-0.4.1/merTools/inst/doc/Using_predictInterval.html | 745 ++++++++---- merTools-0.4.1/merTools/inst/doc/imputation.R |only merTools-0.4.1/merTools/inst/doc/imputation.Rmd |only merTools-0.4.1/merTools/inst/doc/imputation.html |only merTools-0.4.1/merTools/inst/doc/merToolsIntro.R | 20 merTools-0.4.1/merTools/inst/doc/merToolsIntro.Rmd | 20 merTools-0.4.1/merTools/inst/doc/merToolsIntro.html | 709 +++++++---- merTools-0.4.1/merTools/man/FEsim.Rd | 1 merTools-0.4.1/merTools/man/ICC.Rd | 1 merTools-0.4.1/merTools/man/REcorrExtract.Rd | 5 merTools-0.4.1/merTools/man/REextract.Rd | 1 merTools-0.4.1/merTools/man/REimpact.Rd | 1 merTools-0.4.1/merTools/man/REquantile.Rd | 3 merTools-0.4.1/merTools/man/REsdExtract.Rd | 5 merTools-0.4.1/merTools/man/REsim.Rd | 1 merTools-0.4.1/merTools/man/RHSForm.Rd | 1 merTools-0.4.1/merTools/man/RMSE.merMod.Rd | 1 merTools-0.4.1/merTools/man/VarCorr.merModList.Rd | 9 merTools-0.4.1/merTools/man/averageObs.Rd | 1 merTools-0.4.1/merTools/man/buildModelMatrix.Rd | 1 merTools-0.4.1/merTools/man/collapseFrame.Rd | 1 merTools-0.4.1/merTools/man/draw.Rd | 1 merTools-0.4.1/merTools/man/expectedRank.Rd | 1 merTools-0.4.1/merTools/man/famlink.Rd |only merTools-0.4.1/merTools/man/fastdisp.Rd | 20 merTools-0.4.1/merTools/man/fetch.merMod.msgs.Rd |only merTools-0.4.1/merTools/man/figures |only merTools-0.4.1/merTools/man/findFormFuns.Rd | 1 merTools-0.4.1/merTools/man/fixef.merModList.Rd |only merTools-0.4.1/merTools/man/formulaBuild.Rd | 1 merTools-0.4.1/merTools/man/hsb.Rd | 3 merTools-0.4.1/merTools/man/levelfun.Rd | 1 merTools-0.4.1/merTools/man/merModList.Rd | 13 merTools-0.4.1/merTools/man/merTools.Rd | 1 merTools-0.4.1/merTools/man/mkNewReTrms.Rd | 1 merTools-0.4.1/merTools/man/modelFixedEff.Rd | 13 merTools-0.4.1/merTools/man/modelInfo.Rd | 14 merTools-0.4.1/merTools/man/modelRandEffStats.Rd | 9 merTools-0.4.1/merTools/man/plotFEsim.Rd | 2 merTools-0.4.1/merTools/man/plotREsim.Rd | 10 merTools-0.4.1/merTools/man/plot_sim_error_chks.Rd |only merTools-0.4.1/merTools/man/predictInterval.Rd | 24 merTools-0.4.1/merTools/man/print.merModList.Rd | 9 merTools-0.4.1/merTools/man/print.summary.merModList.Rd |only merTools-0.4.1/merTools/man/randomObs.Rd | 1 merTools-0.4.1/merTools/man/ranef.merModList.Rd |only merTools-0.4.1/merTools/man/reOnly.Rd | 1 merTools-0.4.1/merTools/man/reTermCount.Rd | 1 merTools-0.4.1/merTools/man/reTermNames.Rd | 1 merTools-0.4.1/merTools/man/sanitizeNames.Rd | 1 merTools-0.4.1/merTools/man/setup_parallel.Rd | 1 merTools-0.4.1/merTools/man/shinyMer.Rd | 1 merTools-0.4.1/merTools/man/shuffle.Rd | 1 merTools-0.4.1/merTools/man/stripAttributes.Rd | 1 merTools-0.4.1/merTools/man/subBoot.Rd | 1 merTools-0.4.1/merTools/man/subsetList.Rd | 1 merTools-0.4.1/merTools/man/sum.mm.Rd |only merTools-0.4.1/merTools/man/summary.merModList.Rd |only merTools-0.4.1/merTools/man/superFactor.Rd | 1 merTools-0.4.1/merTools/man/thetaExtract.Rd | 7 merTools-0.4.1/merTools/man/wiggle.Rd | 23 merTools-0.4.1/merTools/tests/testthat-a_m.R |only merTools-0.4.1/merTools/tests/testthat-n_z.R |only merTools-0.4.1/merTools/tests/testthat/test-expectedRank.R |only merTools-0.4.1/merTools/tests/testthat/test-helpers.R |only merTools-0.4.1/merTools/tests/testthat/test-merData.R |only merTools-0.4.1/merTools/tests/testthat/test-merExtract.R |only merTools-0.4.1/merTools/tests/testthat/test-merModList.R |only merTools-0.4.1/merTools/tests/testthat/test-merPredict.R |only merTools-0.4.1/merTools/tests/testthat/test-plots.R |only merTools-0.4.1/merTools/tests/testthat/test-seeds.R |only merTools-0.4.1/merTools/tests/testthat/test-subboot.R |only merTools-0.4.1/merTools/tests/testthat/test-substEff.R |only merTools-0.4.1/merTools/vignettes/Using_predictInterval.Rmd | 326 +++-- merTools-0.4.1/merTools/vignettes/imputation.Rmd |only merTools-0.4.1/merTools/vignettes/merToolsIntro.Rmd | 20 103 files changed, 2499 insertions(+), 1212 deletions(-)