Title: R Graphics Devices for Vector Graphics Output
Description: Vector Graphics devices for 'SVG', 'DrawingML' for Microsoft
PowerPoint and Excel. Functions extending package 'officer' are provided to
embed 'DrawingML' graphics into 'Microsoft PowerPoint' presentations and
'Microsoft Excel' workbooks.
Author: David Gohel [aut, cre],
Bob Rudis [ctb] (the javascript code used by function set_attr),
Francois Brunetti [ctb] (clipping algorithms)
Maintainer: David Gohel <david.gohel@ardata.fr>
Diff between rvg versions 0.1.8 dated 2018-02-13 and 0.1.9 dated 2018-06-10
rvg-0.1.8/rvg/src/a_path.cpp |only rvg-0.1.8/rvg/src/a_path.h |only rvg-0.1.8/rvg/src/body_pr.cpp |only rvg-0.1.8/rvg/src/body_pr.h |only rvg-0.1.8/rvg/src/empty_body_text.cpp |only rvg-0.1.8/rvg/src/empty_body_text.h |only rvg-0.1.8/rvg/src/rotate.cpp |only rvg-0.1.8/rvg/src/rotate.h |only rvg-0.1.9/rvg/DESCRIPTION | 8 +-- rvg-0.1.9/rvg/MD5 | 28 ++++-------- rvg-0.1.9/rvg/NEWS | 16 +++++++ rvg-0.1.9/rvg/R/dml_docx.R | 4 + rvg-0.1.9/rvg/R/ph_with_vg.R | 2 rvg-0.1.9/rvg/man/dml_docx.Rd | 2 rvg-0.1.9/rvg/man/ph_with_vg.Rd | 2 rvg-0.1.9/rvg/src/docx.cpp | 40 ++++++++++++------ rvg-0.1.9/rvg/src/pptx.cpp | 75 ++++++++++++++++++++++++++++------ rvg-0.1.9/rvg/src/utils.cpp |only rvg-0.1.9/rvg/src/utils.h |only rvg-0.1.9/rvg/src/xlsx.cpp | 40 +++++++++++++----- 20 files changed, 158 insertions(+), 59 deletions(-)
Title: A Tool for Automating Download and Preprocessing of MODIS Land
Products Data
Description: Allows automating the creation of time series of rasters derived
from MODIS Satellite Land Products data. It performs several typical
preprocessing steps such as download, mosaicking, reprojection and resize
of data acquired on a specified time period. All processing parameters
can be set using a user-friendly GUI. Users can select which layers of
the original MODIS HDF files they want to process, which additional
Quality Indicators should be extracted from aggregated MODIS Quality
Assurance layers and, in the case of Surface Reflectance products
, which Spectral Indexes should be computed from the original reflectance
bands. For each output layer, outputs are saved as single-band raster
files corresponding to each available acquisition date. Virtual files
allowing access to the entire time series as a single file are also created.
Command-line execution exploiting a previously saved processing options
file is also possible, allowing to automatically update time series
related to a MODIS product whenever a new image is available.
Author: Lorenzo Busetto [aut, cre] (<https://orcid.org/0000-0001-9634-6038>),
Luigi Ranghetti [aut]
Maintainer: Lorenzo Busetto <lbusett@gmail.com>
Diff between MODIStsp versions 1.3.3.1 dated 2017-08-17 and 1.3.4 dated 2018-06-10
MODIStsp-1.3.3.1/MODIStsp/R/MODIStest_check_md5.R |only MODIStsp-1.3.3.1/MODIStsp/R/MODIStsp_bbox_from_file.R |only MODIStsp-1.3.3.1/MODIStsp/R/MODIStsp_check_files.R |only MODIStsp-1.3.3.1/MODIStsp/R/MODIStsp_lpdaac_accessoires.R |only MODIStsp-1.3.3.1/MODIStsp/R/MODIStsp_reproj_bbox.R |only MODIStsp-1.3.3.1/MODIStsp/inst/Test_files |only MODIStsp-1.3.3.1/MODIStsp/man/MODIStest_check_md5.Rd |only MODIStsp-1.3.3.1/MODIStsp/man/MODIStsp_check_files.Rd |only MODIStsp-1.3.3.1/MODIStsp/man/lpdaac_getmod_dates.Rd |only MODIStsp-1.3.3.1/MODIStsp/man/lpdaac_getmod_dirs.Rd |only MODIStsp-1.3.3.1/MODIStsp/man/lpdaac_getmod_names.Rd |only MODIStsp-1.3.3.1/MODIStsp/tests/testthat/test-modistsp1.R |only MODIStsp-1.3.3.1/MODIStsp/vignettes/MODIStsp.html |only MODIStsp-1.3.4/MODIStsp/DESCRIPTION | 24 MODIStsp-1.3.4/MODIStsp/MD5 | 220 MODIStsp-1.3.4/MODIStsp/NAMESPACE | 62 MODIStsp-1.3.4/MODIStsp/NEWS.md | 255 MODIStsp-1.3.4/MODIStsp/R/MODIStsp-package.R |only MODIStsp-1.3.4/MODIStsp/R/MODIStsp.R | 821 - MODIStsp-1.3.4/MODIStsp/R/MODIStsp_GUI.R | 2393 +- MODIStsp-1.3.4/MODIStsp/R/MODIStsp_addindex.R | 811 MODIStsp-1.3.4/MODIStsp/R/MODIStsp_download.R |only MODIStsp-1.3.4/MODIStsp/R/MODIStsp_extract.R | 409 MODIStsp-1.3.4/MODIStsp/R/MODIStsp_install_launcher.R | 172 MODIStsp-1.3.4/MODIStsp/R/MODIStsp_process.R | 1548 - MODIStsp-1.3.4/MODIStsp/R/MODIStsp_process_QA_bits.R | 49 MODIStsp-1.3.4/MODIStsp/R/MODIStsp_process_bands.R |only MODIStsp-1.3.4/MODIStsp/R/MODIStsp_process_indexes.R | 92 MODIStsp-1.3.4/MODIStsp/R/MODIStsp_readxml.R | 229 MODIStsp-1.3.4/MODIStsp/R/MODIStsp_reset_options.R |only MODIStsp-1.3.4/MODIStsp/R/MODIStsp_resetindexes.R |only MODIStsp-1.3.4/MODIStsp/R/MODIStsp_vrt_create.R | 433 MODIStsp-1.3.4/MODIStsp/R/ask_permission.R |only MODIStsp-1.3.4/MODIStsp/R/bbox_from_file.R |only MODIStsp-1.3.4/MODIStsp/R/check_files_existance.R |only MODIStsp-1.3.4/MODIStsp/R/check_formula_errors.R |only MODIStsp-1.3.4/MODIStsp/R/check_proj4string.R |only MODIStsp-1.3.4/MODIStsp/R/create_help_messages.R |only MODIStsp-1.3.4/MODIStsp/R/get_mod_dates.R |only MODIStsp-1.3.4/MODIStsp/R/get_mod_dirs.R |only MODIStsp-1.3.4/MODIStsp/R/get_mod_filenames.R |only MODIStsp-1.3.4/MODIStsp/R/get_reqbands.R |only MODIStsp-1.3.4/MODIStsp/R/get_yeardates.R |only MODIStsp-1.3.4/MODIStsp/R/gh_changeproj.R |only MODIStsp-1.3.4/MODIStsp/R/gh_help.R |only MODIStsp-1.3.4/MODIStsp/R/gh_load_extent.R |only MODIStsp-1.3.4/MODIStsp/R/gh_selcat.R |only MODIStsp-1.3.4/MODIStsp/R/gh_selectmap.R |only MODIStsp-1.3.4/MODIStsp/R/gh_sellayers.R |only MODIStsp-1.3.4/MODIStsp/R/gh_selprod.R |only MODIStsp-1.3.4/MODIStsp/R/gh_tiles_from_bbox.R |only MODIStsp-1.3.4/MODIStsp/R/gh_view_extent.R |only MODIStsp-1.3.4/MODIStsp/R/gui_helpers.R |only MODIStsp-1.3.4/MODIStsp/R/load_opts.R |only MODIStsp-1.3.4/MODIStsp/R/load_prodopts.R |only MODIStsp-1.3.4/MODIStsp/R/process_message.R |only MODIStsp-1.3.4/MODIStsp/R/reproj_bbox.R |only MODIStsp-1.3.4/MODIStsp/R/set_bandind_matrix.R |only MODIStsp-1.3.4/MODIStsp/R/split_nodata_values.R |only MODIStsp-1.3.4/MODIStsp/README.md | 192 MODIStsp-1.3.4/MODIStsp/build/vignette.rds |binary MODIStsp-1.3.4/MODIStsp/inst/ExtData/Launcher/Batch/MODIStsp.bat | 6 MODIStsp-1.3.4/MODIStsp/inst/ExtData/Launcher/MODIStsp_launcher.R | 12 MODIStsp-1.3.4/MODIStsp/inst/ExtData/MODIS_Tiles_latlon.RData |only MODIStsp-1.3.4/MODIStsp/inst/ExtData/MODIStsp_ProdOpts.xml | 8198 +--------- MODIStsp-1.3.4/MODIStsp/inst/ExtData/Previous |only MODIStsp-1.3.4/MODIStsp/inst/WORDLIST |only MODIStsp-1.3.4/MODIStsp/inst/doc/MODIStsp.R | 125 MODIStsp-1.3.4/MODIStsp/inst/doc/MODIStsp.Rmd | 724 MODIStsp-1.3.4/MODIStsp/inst/doc/MODIStsp.pdf |binary MODIStsp-1.3.4/MODIStsp/inst/testdata |only MODIStsp-1.3.4/MODIStsp/man/MODIStsp-package.Rd |only MODIStsp-1.3.4/MODIStsp/man/MODIStsp.Rd | 155 MODIStsp-1.3.4/MODIStsp/man/MODIStsp_GUI.Rd | 38 MODIStsp-1.3.4/MODIStsp/man/MODIStsp_addindex.Rd | 128 MODIStsp-1.3.4/MODIStsp/man/MODIStsp_download.Rd |only MODIStsp-1.3.4/MODIStsp/man/MODIStsp_extract.Rd | 187 MODIStsp-1.3.4/MODIStsp/man/MODIStsp_process.Rd | 225 MODIStsp-1.3.4/MODIStsp/man/MODIStsp_process_QA_bits.Rd | 4 MODIStsp-1.3.4/MODIStsp/man/MODIStsp_process_bands.Rd |only MODIStsp-1.3.4/MODIStsp/man/MODIStsp_process_indexes.Rd | 22 MODIStsp-1.3.4/MODIStsp/man/MODIStsp_read_xml.Rd | 6 MODIStsp-1.3.4/MODIStsp/man/MODIStsp_reset_options.Rd |only MODIStsp-1.3.4/MODIStsp/man/MODIStsp_resetindexes.Rd |only MODIStsp-1.3.4/MODIStsp/man/MODIStsp_vrt_create.Rd | 71 MODIStsp-1.3.4/MODIStsp/man/ask_permission.Rd |only MODIStsp-1.3.4/MODIStsp/man/bbox_from_file.Rd | 12 MODIStsp-1.3.4/MODIStsp/man/check_files_existence.Rd |only MODIStsp-1.3.4/MODIStsp/man/check_proj4string.Rd |only MODIStsp-1.3.4/MODIStsp/man/get_mod_dates.Rd |only MODIStsp-1.3.4/MODIStsp/man/get_mod_dirs.Rd |only MODIStsp-1.3.4/MODIStsp/man/get_mod_filenames.Rd |only MODIStsp-1.3.4/MODIStsp/man/get_reqbands.Rd |only MODIStsp-1.3.4/MODIStsp/man/get_yeardates.Rd |only MODIStsp-1.3.4/MODIStsp/man/install_MODIStsp_launcher.Rd | 69 MODIStsp-1.3.4/MODIStsp/man/load_opts.Rd |only MODIStsp-1.3.4/MODIStsp/man/load_prodopts.Rd |only MODIStsp-1.3.4/MODIStsp/man/process_message.Rd |only MODIStsp-1.3.4/MODIStsp/man/reproj_bbox.Rd | 30 MODIStsp-1.3.4/MODIStsp/man/set_bandind_matrix.Rd |only MODIStsp-1.3.4/MODIStsp/man/split_nodata_values.Rd |only MODIStsp-1.3.4/MODIStsp/tests/spelling.R |only MODIStsp-1.3.4/MODIStsp/tests/testthat.R | 3 MODIStsp-1.3.4/MODIStsp/tests/testthat/test-split_nodata_values.R |only MODIStsp-1.3.4/MODIStsp/tests/testthat/test_MODIStsp.R |only MODIStsp-1.3.4/MODIStsp/tests/testthat/test_MODIStsp_addindex.R |only MODIStsp-1.3.4/MODIStsp/tests/testthat/test_MODIStsp_extract.R |only MODIStsp-1.3.4/MODIStsp/tests/testthat/test_MODIStsp_readxml.R |only MODIStsp-1.3.4/MODIStsp/tests/testthat/test_MODIStsp_resetindexes.R |only MODIStsp-1.3.4/MODIStsp/tests/testthat/test_bbox_from_file.R |only MODIStsp-1.3.4/MODIStsp/tests/testthat/test_check_proj4string.R |only MODIStsp-1.3.4/MODIStsp/tests/testthat/test_create_help_messages.R |only MODIStsp-1.3.4/MODIStsp/tests/testthat/test_get_yeardates.R |only MODIStsp-1.3.4/MODIStsp/tests/testthat/test_modistspGUI.R | 19 MODIStsp-1.3.4/MODIStsp/vignettes/MAIN_GUI.png |only MODIStsp-1.3.4/MODIStsp/vignettes/MODIStsp.Rmd | 724 MODIStsp-1.3.4/MODIStsp/vignettes/NEWIND_GUI.png |only MODIStsp-1.3.4/MODIStsp/vignettes/SELECT_GUI.png |only 118 files changed, 6490 insertions(+), 11978 deletions(-)
Title: Quantitative Exploration of Elastic Net Families for Generalized
Linear Models
Description: Provides a quantitative toolkit to explore elastic net families and to uncover correlates contributing to prediction under a cross-validation framework. Fits linear, binomial (logistic) and multinomial models. Candia J and Tsang JS (2018), bioRxiv 305870 (under review).
Author: Julian Candia and John S. Tsang
Maintainer: Julian Candia <julian.candia@nih.gov>
Diff between eNetXplorer versions 1.0 dated 2018-04-25 and 1.0.1 dated 2018-06-10
ChangeLog |only DESCRIPTION | 10 +++++----- MD5 | 19 ++++++++++--------- R/eNetXplorerBinomial.R | 5 ++++- R/eNetXplorerGaussian.R | 5 ++++- R/eNetXplorerMultinomial.R | 5 ++++- R/export.R | 26 ++++++++++++++++++++++++++ R/plotFeatureHeatmap.R | 5 ++--- R/plotFeatureHeatmapMultinom.R | 5 ++--- man/eNetXplorer-package.Rd | 8 ++++++-- man/eNetXplorer.Rd | 4 ++++ 11 files changed, 67 insertions(+), 25 deletions(-)
Title: Compound Poisson Linear Models
Description: Likelihood-based and Bayesian methods for various compound Poisson linear models based on Zhang, Yanwei (2013) <https://link.springer.com/article/10.1007/s11222-012-9343-7>.
Author: Yanwei (Wayne) Zhang
Maintainer: Yanwei (Wayne) Zhang <actuary_zhang@hotmail.com>
Diff between cplm versions 0.7-6 dated 2018-05-06 and 0.7-7 dated 2018-06-10
DESCRIPTION | 8 MD5 | 6 R/gini.R | 1 R/utilities.R | 664 ++++++++++++++++++++++++++++------------------------------ 4 files changed, 339 insertions(+), 340 deletions(-)
Title: Component Models for Multi-Way Data
Description: Fits multi-way component models via alternating least squares algorithms with optional constraints. Fit models include Individual Differences Scaling, Multiway Covariates Regression, Parallel Factor Analysis (1 and 2), Simultaneous Component Analysis, and Tucker Factor Analysis.
Author: Nathaniel E. Helwig <helwig@umn.edu>
Maintainer: Nathaniel E. Helwig <helwig@umn.edu>
Diff between multiway versions 1.0-4 dated 2017-11-13 and 1.0-5 dated 2018-06-10
multiway-1.0-4/multiway/R/IsplineBasis.R |only multiway-1.0-4/multiway/R/MsplineBasis.R |only multiway-1.0-4/multiway/R/fmnls.R |only multiway-1.0-4/multiway/R/fsmls.R |only multiway-1.0-4/multiway/R/fumls.R |only multiway-1.0-4/multiway/R/nrescale.R |only multiway-1.0-4/multiway/R/rfunc.R |only multiway-1.0-5/multiway/ChangeLog | 51 + multiway-1.0-5/multiway/DESCRIPTION | 12 multiway-1.0-5/multiway/MD5 | 139 ++-- multiway-1.0-5/multiway/NAMESPACE | 9 multiway-1.0-5/multiway/R/const.control.R | 87 +- multiway-1.0-5/multiway/R/fitted.mcr.R |only multiway-1.0-5/multiway/R/fitted.parafac2.R | 7 multiway-1.0-5/multiway/R/indscal.R | 218 +++++- multiway-1.0-5/multiway/R/initcmls.R |only multiway-1.0-5/multiway/R/mcr.R |only multiway-1.0-5/multiway/R/mcr_parafac.R |only multiway-1.0-5/multiway/R/mcr_parafac2.R |only multiway-1.0-5/multiway/R/mcr_tucker.R |only multiway-1.0-5/multiway/R/meansq.R |only multiway-1.0-5/multiway/R/nscale.R | 298 ++++++--- multiway-1.0-5/multiway/R/parafac.R | 363 ++++++++--- multiway-1.0-5/multiway/R/parafac2.R | 337 ++++++++-- multiway-1.0-5/multiway/R/parafac2_3way.R | 575 +++++------------ multiway-1.0-5/multiway/R/parafac2_3wayna.R | 578 +++++------------ multiway-1.0-5/multiway/R/parafac2_4way.R | 739 ++++++---------------- multiway-1.0-5/multiway/R/parafac2_4wayna.R | 746 ++++++----------------- multiway-1.0-5/multiway/R/parafac_3way.R | 523 +++------------- multiway-1.0-5/multiway/R/parafac_3wayna.R | 534 +++------------- multiway-1.0-5/multiway/R/parafac_4way.R | 706 +++++---------------- multiway-1.0-5/multiway/R/parafac_4wayna.R | 718 +++++----------------- multiway-1.0-5/multiway/R/print.mcr.R |only multiway-1.0-5/multiway/R/print.parafac.R | 9 multiway-1.0-5/multiway/R/print.parafac2.R | 9 multiway-1.0-5/multiway/R/reorder.mcr.R |only multiway-1.0-5/multiway/R/rescale.indscal.R | 7 multiway-1.0-5/multiway/R/rescale.mcr.R |only multiway-1.0-5/multiway/R/rescale.parafac.R | 7 multiway-1.0-5/multiway/R/rescale.parafac2.R | 8 multiway-1.0-5/multiway/R/rescale.sca.R | 5 multiway-1.0-5/multiway/R/rescale.tucker.R | 10 multiway-1.0-5/multiway/R/resign.indscal.R | 4 multiway-1.0-5/multiway/R/resign.mcr.R |only multiway-1.0-5/multiway/R/resign.parafac.R | 7 multiway-1.0-5/multiway/R/resign.parafac2.R | 8 multiway-1.0-5/multiway/R/resign.sca.R | 5 multiway-1.0-5/multiway/R/resign.tucker.R | 7 multiway-1.0-5/multiway/R/sca.R | 233 ++++--- multiway-1.0-5/multiway/R/sumsq.R | 6 multiway-1.0-5/multiway/R/tucker.R | 4 multiway-1.0-5/multiway/R/tucker_3way.R | 4 multiway-1.0-5/multiway/R/tucker_3wayna.R | 7 multiway-1.0-5/multiway/R/tucker_4way.R | 4 multiway-1.0-5/multiway/R/tucker_4wayna.R | 7 multiway-1.0-5/multiway/build |only multiway-1.0-5/multiway/man/USalcohol.Rd | 12 multiway-1.0-5/multiway/man/congru.Rd | 3 multiway-1.0-5/multiway/man/const.control.Rd | 58 - multiway-1.0-5/multiway/man/corcondia.Rd | 4 multiway-1.0-5/multiway/man/fitted.Rd | 25 multiway-1.0-5/multiway/man/fnnls.Rd | 5 multiway-1.0-5/multiway/man/indscal.Rd | 147 ++-- multiway-1.0-5/multiway/man/krprod.Rd | 17 multiway-1.0-5/multiway/man/mcr.Rd |only multiway-1.0-5/multiway/man/meansq.Rd |only multiway-1.0-5/multiway/man/mpinv.Rd | 11 multiway-1.0-5/multiway/man/multiway-internal.Rd | 10 multiway-1.0-5/multiway/man/multiway-package.Rd | 32 multiway-1.0-5/multiway/man/ncenter.Rd | 30 multiway-1.0-5/multiway/man/nscale.Rd | 126 ++- multiway-1.0-5/multiway/man/parafac.Rd | 208 +++--- multiway-1.0-5/multiway/man/parafac2.Rd | 233 +++---- multiway-1.0-5/multiway/man/print.Rd | 10 multiway-1.0-5/multiway/man/reorder.Rd | 10 multiway-1.0-5/multiway/man/rescale.Rd | 18 multiway-1.0-5/multiway/man/resign.Rd | 20 multiway-1.0-5/multiway/man/sca.Rd | 61 + multiway-1.0-5/multiway/man/smpower.Rd | 8 multiway-1.0-5/multiway/man/sumsq.Rd | 5 multiway-1.0-5/multiway/man/tucker.Rd | 19 81 files changed, 3397 insertions(+), 4666 deletions(-)
Title: Calculate Key DHS Indicators
Description: Calculates key indicators such as fertility rates (Total Fertility Rate (TFR), General Fertility Rate (GFR),
and Age Specific Fertility Rate (ASFR)) using Demographic and Health Survey (DHS) women/individual data,
and childhood mortality rates such as Neonatal Mortality Rate (NNMR), Post-neonatal Mortality Rate (PNNMR),
Infant Mortality Rate (IMR), Child Mortality Rate (CMR), and Under-5 Mortality Rate (U5MR).
In addition to the indicators, the 'DHS.rates' package estimates precision indicators such as Standard Error (SE),
Design Effect (DEFT), Relative Standard Error (RSE) and Confidence Interval (CI).
The package is developed according to the DHS methodology of calculating the fertility indicators and
the childhood mortality rates outlined in the
"DHS Guide to Statistics" (Rutstein and Rojas 2006, <http://dhsprogram.com/pubs/pdf/DHSG1/Guide_to_DHS_Statistics_29Oct2012_DHSG1.pdf>)
and the DHS methodology of estimating the precision indicators outlined in
the "DHS Sampling and Household Listing Manual" (ICF International 2012, <https://dhsprogram.com/pubs/pdf/DHSM4/DHS6_Sampling_Manual_Sept2012_DHSM4.pdf>).
Author: Mahmoud Elkasabi
Maintainer: Mahmoud Elkasabi <mahmoud.elkasabi@icf.com>
Diff between DHS.rates versions 0.3.0 dated 2018-04-16 and 0.3.1 dated 2018-06-10
DESCRIPTION | 8 +- MD5 | 38 ++++++------ R/ASFR.R | 133 ++++++++++++++++++++++++++++---------------- R/CHMORT5.R | 109 ++++++++++++++++++++---------------- R/DataPrepare.R | 55 ++++++++++-------- R/GFR.R | 79 ++++++++++++++------------ R/TFR.R | 117 +++++++++++++++++++++----------------- R/chmort.R | 145 +++++++++++++++++++++++++++++++----------------- R/data.R | 9 +- R/fert.R | 92 +++++++++++++++++++++--------- build/vignette.rds |binary data/ADBR70.rda |binary data/AWIR70.rda |binary data/EMIR70.rda |binary inst/doc/DHS.rates.html | 4 - man/ADBR70.Rd | 3 man/AWIR70.Rd | 3 man/EMIR70.Rd | 3 man/chmort.Rd | 22 +++++-- man/fert.Rd | 25 +++++--- 20 files changed, 521 insertions(+), 324 deletions(-)
Title: Diffs for R Objects
Description: Generate a colorized diff of two R objects for an intuitive
visualization of their differences.
Author: Brodie Gaslam [aut, cre],
Michael B. Allen [ctb, cph] (Original C implementation of Myers Diff
Algorithm)
Maintainer: Brodie Gaslam <brodie.gaslam@yahoo.com>
Diff between diffobj versions 0.1.9 dated 2018-01-28 and 0.1.10 dated 2018-06-10
DESCRIPTION | 11 MD5 | 31 +- NEWS.md | 6 R/core.R | 24 + R/system.R | 1 README.md | 19 - build/vignette.rds |binary inst/doc/diffobj.html | 521 ++++++++++++++++++++++++++++++++++----- inst/doc/metacomp.html | 499 +++++++++++++++++++++++++++++++++---- man/Style.Rd | 2 man/diff_myers.Rd | 4 man/ses.Rd | 8 src/diff.c | 16 - tests/run.R | 10 tests/testthat/testthat.guide.R | 41 --- tests/testthat/testthat.ses.R |only tests/testthat/testthat.subset.R | 15 - 17 files changed, 999 insertions(+), 209 deletions(-)
Title: Calculate Water Vapor Measures from Temperature and Dew Point
Description: Vapor pressure, relative humidity, absolute humidity, specific humidity, and mixing ratio are commonly used water vapor measures in meteorology. This R package provides functions for calculating saturation vapor pressure (hPa), partial water vapor pressure (Pa), relative humidity (%), absolute humidity (kg/m^3), specific humidity (kg/kg), and mixing ratio (kg/kg) from temperature (K) and dew point (K). Conversion functions between humidity measures are also provided.
Author: Jun Cai [aut, cre]
Maintainer: Jun Cai <cai-j12@mails.tsinghua.edu.cn>
Diff between humidity versions 0.1.3 dated 2018-06-10 and 0.1.4 dated 2018-06-10
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- inst/doc/humidity-measures.html | 6 +++--- inst/doc/ivs-sh.html | 4 ++-- vignettes/bibliography.bib | 4 ++-- 5 files changed, 14 insertions(+), 14 deletions(-)
Title: Parsing Command-Line Arguments and Variable Interpolation
Description: This is yet another command-line argument parser which wraps the
powerful Perl module Getopt::Long and with some adaptation for easier use
in R. It also provides a simple way for variable interpolation in R.
Author: Zuguang Gu
Maintainer: Zuguang Gu <z.gu@dkfz.de>
Diff between GetoptLong versions 0.1.6 dated 2017-03-06 and 0.1.7 dated 2018-06-10
DESCRIPTION | 14 ++++----- LICENSE |only MD5 | 28 +++++++++--------- NAMESPACE | 1 NEWS | 9 +++++ R/0_global.R | 20 +++++++------ R/GetoptLong.R | 53 ++++++++++++++++++++++++----------- R/qq.R | 13 +++++--- build/vignette.rds |binary inst/doc/GetoptLong.html | 18 +++++++---- inst/doc/variable_interpolation.html | 27 ++++++++++------- man/GetoptLong.options.rd | 10 +++--- man/get_scriptdir.rd |only man/get_scriptname.rd | 4 +- man/qq.options.rd | 12 +++---- man/qq.rd | 2 - 16 files changed, 130 insertions(+), 81 deletions(-)
Title: Circular Visualization
Description: Circular layout is an efficient way for the visualization of huge
amounts of information. Here this package provides an implementation
of circular layout generation in R as well as an enhancement of available
software. The flexibility of the package is based on the usage of low-level
graphics functions such that self-defined high-level graphics can be easily
implemented by users for specific purposes. Together with the seamless
connection between the powerful computational and visual environment in R,
it gives users more convenience and freedom to design figures for
better understanding complex patterns behind multiple dimensional data.
Author: Zuguang Gu
Maintainer: Zuguang Gu <z.gu@dkfz.de>
Diff between circlize versions 0.4.3 dated 2017-12-20 and 0.4.4 dated 2018-06-10
DESCRIPTION | 12 ++++++------ LICENSE |only MD5 | 15 ++++++++------- NEWS | 6 ++++++ R/genomic.R | 41 ++++++++++++++++++++++++++++++----------- R/global.R | 3 ++- build/vignette.rds |binary man/circos.par.rd | 4 ++-- man/genomicDensity.rd | 3 ++- 9 files changed, 56 insertions(+), 28 deletions(-)
Title: 'Rcpp' Integration of Different "Ziggurat" Normal RNG
Implementations
Description: The Ziggurat generator for normally distributed random
numbers, originally proposed by Marsaglia and Tsang (2000,
<doi:10.18637/jss.v005.i08>) has been improved upon a few times
starting with Leong et al (2005, <doi:10.18637/jss.v012.i07>).
This package provides an aggregation in order to compare different
implementations in order to provide an 'faster but good enough'
alternative for use with R and C++ code.
Author: Dirk Eddelbuettel <edd@debian.org>
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppZiggurat versions 0.1.4 dated 2017-09-27 and 0.1.5 dated 2018-06-10
RcppZiggurat-0.1.4/RcppZiggurat/vignettes/RcppZiggurat.bib |only RcppZiggurat-0.1.5/RcppZiggurat/ChangeLog | 28 ++ RcppZiggurat-0.1.5/RcppZiggurat/DESCRIPTION | 20 - RcppZiggurat-0.1.5/RcppZiggurat/MD5 | 28 +- RcppZiggurat-0.1.5/RcppZiggurat/build/vignette.rds |binary RcppZiggurat-0.1.5/RcppZiggurat/cleanup | 3 RcppZiggurat-0.1.5/RcppZiggurat/inst/NEWS.Rd | 22 + RcppZiggurat-0.1.5/RcppZiggurat/inst/doc/RcppZiggurat.Rmd | 138 ----------- RcppZiggurat-0.1.5/RcppZiggurat/inst/doc/RcppZiggurat.pdf |binary RcppZiggurat-0.1.5/RcppZiggurat/inst/include/Ziggurat.h | 3 RcppZiggurat-0.1.5/RcppZiggurat/src/RcppExports.cpp | 34 -- RcppZiggurat-0.1.5/RcppZiggurat/src/init.c |only RcppZiggurat-0.1.5/RcppZiggurat/tests/zigguratTest.R | 3 RcppZiggurat-0.1.5/RcppZiggurat/tests/zigguratTest.Rout.save | 13 - RcppZiggurat-0.1.5/RcppZiggurat/vignettes/RcppZiggurat.Rmd | 138 ----------- RcppZiggurat-0.1.5/RcppZiggurat/vignettes/bib.tex |only RcppZiggurat-0.1.5/RcppZiggurat/vignettes/header.tex |only 17 files changed, 111 insertions(+), 319 deletions(-)
Title: 'Rcpp' Integration for 'GNU GSL' Vectors and Matrices
Description: 'Rcpp' integration for 'GNU GSL' vectors and matrices
The 'GNU Scientific Library' (or 'GSL') is a collection of numerical routines for
scientific computing. It is particularly useful for C and C++ programs as it
provides a standard C interface to a wide range of mathematical routines. There
are over 1000 functions in total with an extensive test suite. The 'RcppGSL'
package provides an easy-to-use interface between 'GSL' data structures and
R using concepts from 'Rcpp' which is itself a package that eases the
interfaces between R and C++. This package also serves as a prime example of
how to build a package that uses 'Rcpp' to connect to another third-party
library. The 'autoconf' script, 'inline' plugin and example package can all
be used as a stanza to write a similar package against another library.
Author: Dirk Eddelbuettel and Romain Francois
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppGSL versions 0.3.5 dated 2018-05-19 and 0.3.6 dated 2018-06-10
ChangeLog | 9 +++ DESCRIPTION | 8 +- MD5 | 18 +++--- build/partial.rdb |binary inst/NEWS.Rd | 6 ++ inst/doc/RcppGSL-intro.Rmd | 120 ++--------------------------------------- inst/doc/RcppGSL-intro.pdf |binary inst/doc/RcppGSL-unitTests.pdf |binary vignettes/RcppGSL-intro.Rmd | 120 ++--------------------------------------- vignettes/bib.tex |only vignettes/header.tex |only 11 files changed, 43 insertions(+), 238 deletions(-)
Title: Deprecated 'classic' 'Rcpp' 'API'
Description: The 'RcppClassic' package provides a deprecated C++ library which
facilitates the integration of R and C++. New projects should use the new 'Rcpp'
'API' in the 'Rcpp' package.
Author: Dirk Eddelbuettel and Romain Francois, with contributions by David Reiss,
and based on code written during 2005 and 2006 by Dominick Samperi
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppClassic versions 0.9.9 dated 2017-11-19 and 0.9.10 dated 2018-06-10
ChangeLog | 10 ++++++ DESCRIPTION | 8 ++--- MD5 | 18 ++++++------ build/vignette.rds |binary cleanup | 2 - inst/doc/RcppClassic-intro.Rmd | 55 ++++++------------------------------- inst/doc/RcppClassic-intro.pdf |binary inst/doc/RcppClassic-unitTests.pdf |binary vignettes/RcppClassic-intro.Rmd | 55 ++++++------------------------------- vignettes/bib.tex |only vignettes/header.tex |only 11 files changed, 43 insertions(+), 105 deletions(-)
Title: Tools for Combinatorics and Computational Mathematics
Description: Provides optimized functions implemented in C++ with 'Rcpp'
for solving problems in combinatorics and computational mathematics.
There are combination/permutations function that are both flexible as
well as efficient with respect to speed and memory. There are optional
constraint parameters that when utilized, generate all combinations/
permutations of a vector meeting specific criteria (e.g. finding all
combinations such that the sum is less than a bound). These functions
are capable of generating specific combinations/permutations (e.g.
retrieve only the 50th lexicographical permutation of 5 elements
choose 3) by utilizing the bounds arguments. This sets up nicely for
parallelization and allows for fast generation of combinations/
permutations beyond 2^31 - 1 results as chunks are generated
independently. All combinatorial functions are capable of handling
multisets as well. Additionally, there are several highly efficient
number theoretic functions that are useful for problems common in
computational mathematics. These include various sieving functions
that can quickly generate the following: prime numbers, number of
coprime elements, number of divisors, prime factorizations, and
complete factorizations. Some of these functions make use of the fast
integer division library 'libdivide' by <http://ridiculousfish.com>.
The primeSieve function is based on the segmented sieve of Eratosthenes
implementation by Kim Walisch. It is capable of generating all primes
less than a billion in just over 1 second. It can also quickly generate
prime numbers over a range (e.g. primeSieve(10^13, 10^13+10^9)). There
are stand-alone vectorized functions for general factoring (e.g. all
divisors of number), primality testing, as well as prime factoring via
Pollard's rho algorithm. Finally, there is a prime counting function
that implements a simple variation of Legendre's formula based on the
algorithm by Kim Walisch. It is capable of returning the number of
primes below a trillion in under 0.5 seconds.
Author: Joseph Wood
Maintainer: Joseph Wood <jwood000@gmail.com>
Diff between RcppAlgos versions 1.0.1 dated 2018-03-10 and 2.0.1 dated 2018-06-10
RcppAlgos-1.0.1/RcppAlgos/inst/include/CombPermUtility.h |only RcppAlgos-1.0.1/RcppAlgos/inst/include/RcppAlgos.h |only RcppAlgos-1.0.1/RcppAlgos/src/CombPermUtility.cpp |only RcppAlgos-1.0.1/RcppAlgos/src/CombinatoricsContainer.cpp |only RcppAlgos-2.0.1/RcppAlgos/DESCRIPTION | 55 - RcppAlgos-2.0.1/RcppAlgos/MD5 | 65 - RcppAlgos-2.0.1/RcppAlgos/NAMESPACE | 4 RcppAlgos-2.0.1/RcppAlgos/NEWS | 16 RcppAlgos-2.0.1/RcppAlgos/R/Combinatorics.R | 93 ++ RcppAlgos-2.0.1/RcppAlgos/R/RcppExports.R | 8 RcppAlgos-2.0.1/RcppAlgos/README.md | 104 ++ RcppAlgos-2.0.1/RcppAlgos/inst/include/CombPermUtils.h |only RcppAlgos-2.0.1/RcppAlgos/inst/include/Combinations.h |only RcppAlgos-2.0.1/RcppAlgos/inst/include/ConstraintsUtils.h |only RcppAlgos-2.0.1/RcppAlgos/inst/include/NthResult.h |only RcppAlgos-2.0.1/RcppAlgos/inst/include/Permutations.h |only RcppAlgos-2.0.1/RcppAlgos/inst/include/PollardRho.h | 11 RcppAlgos-2.0.1/RcppAlgos/man/RcppAlgos-package.Rd | 8 RcppAlgos-2.0.1/RcppAlgos/man/combinatoricsCount.Rd |only RcppAlgos-2.0.1/RcppAlgos/man/combinatoricsGeneral.Rd | 136 ++- RcppAlgos-2.0.1/RcppAlgos/man/combinatoricsSample.Rd |only RcppAlgos-2.0.1/RcppAlgos/src/CombPermUtils.cpp |only RcppAlgos-2.0.1/RcppAlgos/src/Combinatorics.cpp |only RcppAlgos-2.0.1/RcppAlgos/src/ConstraintsUtils.cpp |only RcppAlgos-2.0.1/RcppAlgos/src/DivisorsContainer.cpp | 169 +--- RcppAlgos-2.0.1/RcppAlgos/src/NthResult.cpp |only RcppAlgos-2.0.1/RcppAlgos/src/PollardRho.cpp | 68 - RcppAlgos-2.0.1/RcppAlgos/src/PrimesContainer.cpp | 226 ++--- RcppAlgos-2.0.1/RcppAlgos/src/RcppExports.cpp | 38 RcppAlgos-2.0.1/RcppAlgos/src/SampleContainer.cpp |only RcppAlgos-2.0.1/RcppAlgos/tests/testthat/testComboGeneral.R | 392 +++++++++- RcppAlgos-2.0.1/RcppAlgos/tests/testthat/testDivisorsRcpp.R | 16 RcppAlgos-2.0.1/RcppAlgos/tests/testthat/testDivisorsSieve.R | 13 RcppAlgos-2.0.1/RcppAlgos/tests/testthat/testEulerPhiSieve.R | 7 RcppAlgos-2.0.1/RcppAlgos/tests/testthat/testIsPrimeRcpp.R | 2 RcppAlgos-2.0.1/RcppAlgos/tests/testthat/testNumDivisorSieve.R | 14 RcppAlgos-2.0.1/RcppAlgos/tests/testthat/testPermuteGeneral.R | 317 +++++++- RcppAlgos-2.0.1/RcppAlgos/tests/testthat/testPrimeCount.R | 6 RcppAlgos-2.0.1/RcppAlgos/tests/testthat/testPrimeFactorize.R | 11 RcppAlgos-2.0.1/RcppAlgos/tests/testthat/testPrimeFactorizeSieve.R | 5 RcppAlgos-2.0.1/RcppAlgos/tests/testthat/testPrimeSieve.R | 13 RcppAlgos-2.0.1/RcppAlgos/tests/testthat/testSample.R |only 42 files changed, 1367 insertions(+), 430 deletions(-)
Title: Calculate Water Vapor Measures from Temperature and Dew Point
Description: Vapor pressure, relative humidity, absolute humidity, specific humidity, and mixing ratio are commonly used water vapor measures in meteorology. This R package provides functions for calculating saturation vapor pressure (hPa), partial water vapor pressure (Pa), relative humidity (%), absolute humidity (kg/m^3), specific humidity (kg/kg), and mixing ratio (kg/kg) from temperature (K) and dew point (K). Conversion functions between humidity measures are also provided.
Author: Jun Cai [aut, cre]
Maintainer: Jun Cai <cai-j12@mails.tsinghua.edu.cn>
Diff between humidity versions 0.1.0 dated 2016-07-22 and 0.1.3 dated 2018-06-10
humidity-0.1.0/humidity/man/WVP.Rd |only humidity-0.1.3/humidity/DESCRIPTION | 21 humidity-0.1.3/humidity/MD5 | 58 +- humidity-0.1.3/humidity/NAMESPACE | 5 humidity-0.1.3/humidity/NEWS.md |only humidity-0.1.3/humidity/R/humidity.R | 140 +++-- humidity-0.1.3/humidity/README.md |only humidity-0.1.3/humidity/build/vignette.rds |binary humidity-0.1.3/humidity/inst/CITATION |only humidity-0.1.3/humidity/inst/doc/humidity-measures.Rmd |only humidity-0.1.3/humidity/inst/doc/humidity-measures.html |only humidity-0.1.3/humidity/inst/doc/ivs-sh.R | 23 humidity-0.1.3/humidity/inst/doc/ivs-sh.Rmd | 40 - humidity-0.1.3/humidity/inst/doc/ivs-sh.html | 418 ++++++++++++---- humidity-0.1.3/humidity/man/AH.Rd | 11 humidity-0.1.3/humidity/man/C2K.Rd | 9 humidity-0.1.3/humidity/man/Es.T0.Rd | 1 humidity-0.1.3/humidity/man/K2C.Rd | 9 humidity-0.1.3/humidity/man/L.Rd | 1 humidity-0.1.3/humidity/man/MR.Rd | 11 humidity-0.1.3/humidity/man/Md.Rd | 1 humidity-0.1.3/humidity/man/Mw.Rd | 1 humidity-0.1.3/humidity/man/RH.Rd |only humidity-0.1.3/humidity/man/Rw.Rd | 1 humidity-0.1.3/humidity/man/SH.Rd | 11 humidity-0.1.3/humidity/man/SH2RH.Rd |only humidity-0.1.3/humidity/man/SVP.ClaCla.Rd | 13 humidity-0.1.3/humidity/man/SVP.Murray.Rd | 13 humidity-0.1.3/humidity/man/SVP.Rd | 11 humidity-0.1.3/humidity/man/T0.Rd | 1 humidity-0.1.3/humidity/man/WVP1.Rd |only humidity-0.1.3/humidity/man/WVP2.Rd |only humidity-0.1.3/humidity/man/ivs.Rd | 1 humidity-0.1.3/humidity/vignettes/bibliography.bib |only humidity-0.1.3/humidity/vignettes/humidity-measures.Rmd |only humidity-0.1.3/humidity/vignettes/ivs-sh.Rmd | 35 - 36 files changed, 558 insertions(+), 277 deletions(-)
Title: Time Series Clustering Along with Optimizations for the Dynamic
Time Warping Distance
Description: Time series clustering along with optimized techniques related
to the Dynamic Time Warping distance and its corresponding lower bounds.
Implementations of partitional, hierarchical, fuzzy, k-Shape and TADPole
clustering are available. Functionality can be easily extended with
custom distance measures and centroid definitions. Implementations of
DTW barycenter averaging, a distance based on global alignment kernels,
and the soft-DTW distance and centroid routines are also provided.
All included distance functions have custom loops optimized for the
calculation of cross-distance matrices, including parallelization support.
Several cluster validity indices are included.
Author: Alexis Sarda-Espinosa
Maintainer: Alexis Sarda <alexis.sarda@gmail.com>
Diff between dtwclust versions 5.4.0 dated 2018-05-12 and 5.4.1 dated 2018-06-10
DESCRIPTION | 8 MD5 | 62 - R/CENTROIDS-shape-extraction.R | 2 R/CLUSTERING-compare-clusterings.R | 1934 +++++++++++++++---------------- R/CLUSTERING-ddist2.R | 9 R/CLUSTERING-partitional-fuzzy.R | 282 ++-- R/CLUSTERING-repeat-clustering.R | 4 R/CLUSTERING-tadpole.R | 236 +-- R/CLUSTERING-tsclust-controls.R | 404 +++--- R/CLUSTERING-tsclust.R | 1612 +++++++++++++------------- R/DISTANCES-dtw-basic.R | 3 R/DISTANCES-dtw-lb.R | 437 +++---- R/DISTANCES-dtw2.R | 116 - R/DISTANCES-gak.R | 5 R/DISTANCES-lb-improved.R | 350 ++--- R/DISTANCES-lb-keogh.R | 297 ++-- R/DISTANCES-sbd.R | 11 R/DISTANCES-sdtw.R | 181 +- R/GENERICS-cvi.R | 539 ++++---- R/S4-Distmat.R | 200 +-- R/S4-SparseDistmat.R | 231 +-- R/S4-TSClusters-methods.R | 2249 ++++++++++++++++++------------------- R/UTILS-expressions.R | 1 R/UTILS-utils.R | 18 inst/NEWS.Rd | 34 inst/doc/dtwclust.Rnw | 6 inst/doc/dtwclust.pdf |binary man/tsclust.Rd | 9 tests/testthat/acceptance/dtwb.R | 53 tests/testthat/unit/centroids.R | 16 tests/testthat/unit/misc.R | 13 vignettes/dtwclust.Rnw | 6 32 files changed, 4689 insertions(+), 4639 deletions(-)
Title: Make 'ggplot2' Graphics Interactive
Description: Create interactive 'ggplot2' graphics using 'htmlwidgets'.
Author: David Gohel [aut, cre],
Mike Bostock [cph] (d3.js),
Speros Kokenes [cph] (d3-lasso),
Eric Book [ctb] (hline and vline geoms)
Maintainer: David Gohel <david.gohel@ardata.fr>
Diff between ggiraph versions 0.4.2 dated 2017-12-19 and 0.4.3 dated 2018-06-10
DESCRIPTION | 16 ++-- MD5 | 58 +++++++++-------- NAMESPACE | 14 ++++ NEWS | 9 ++ R/geom_boxplot_interactive.R | 4 + R/geom_hline_interactive.R |only R/geom_path_interactive.R | 4 + R/geom_point_interactive.R | 4 + R/geom_polygon_interactive.R | 11 +++ R/geom_rect_interactive.R | 10 ++ R/geom_segment_interactive.R | 4 + R/geom_text_interactive.R | 4 + R/geom_vline_interactive.R |only R/ggiraph.R | 11 ++- R/utils.R | 16 ++++ R/zz_geom_bar_interactive.r | 4 + build/vignette.rds |binary inst/htmlwidgets/ggiraph.js | 20 +++-- inst/htmlwidgets/lib/ggiraph-0.3.0/ggiraph_selector.js | 2 inst/htmlwidgets/lib/ggiraph-0.3.0/ggiraph_tooltip.js | 41 ++++++++++++ inst/shiny/DT/server.R | 1 inst/shiny/cars/server.R | 1 inst/shiny/ggraph |only inst/shiny/iris/server.R | 3 inst/shiny/maps/server.R | 3 inst/shiny/maps/ui.R | 3 man/geom_histogram_interactive.Rd | 4 - man/geom_hline_interactive.Rd |only man/geom_vline_interactive.Rd |only man/ggiraph-ggproto.Rd |only man/ggiraph.Rd | 7 +- man/interactive_text_grob.Rd | 4 - 32 files changed, 204 insertions(+), 54 deletions(-)
Title: Continuous Time Structural Equation Modelling
Description: A hierarchical, multivariate, continuous (and discrete) time dynamic modelling
package for panel and time series data, using stochastic differential
equations. Contains a faster frequentist set of functions using OpenMx for
single subject and mixed-effects (random intercepts only) structural
equation models, or a hierarchical Bayesian implementation using Stan that
allows for random effects and non-linearity over all model parameters.
Allows for modelling of multiple noisy measurements of multiple stochastic
processes, time varying input / event covariates, and time invariant
covariates used to predict the parameters.
Author: Charles Driver [aut, cre, cph],
Manuel Voelkle [aut, cph],
Han Oud [aut, cph]
Maintainer: Charles Driver <driver@mpib-berlin.mpg.de>
Diff between ctsem versions 2.5.0 dated 2017-10-18 and 2.6.4 dated 2018-06-10
ctsem-2.5.0/ctsem/R/ctStanFitTV.R |only ctsem-2.5.0/ctsem/man/ctStanFitTV.Rd |only ctsem-2.5.0/ctsem/tests/testthat/kalmanVram.R.orig |only ctsem-2.5.0/ctsem/vignettes/hierarchicalreferences.bib |only ctsem-2.6.4/ctsem/DESCRIPTION | 38 ctsem-2.6.4/ctsem/MD5 | 160 - ctsem-2.6.4/ctsem/NAMESPACE | 14 ctsem-2.6.4/ctsem/NEWS | 18 ctsem-2.6.4/ctsem/R/Kalman.R | 651 ++-- ctsem-2.6.4/ctsem/R/ctCheckFit.R | 137 ctsem-2.6.4/ctsem/R/ctDataHelp.R | 92 ctsem-2.6.4/ctsem/R/ctDiscretePars.R | 93 ctsem-2.6.4/ctsem/R/ctFit.R | 104 ctsem-2.6.4/ctsem/R/ctFitR.R |only ctsem-2.6.4/ctsem/R/ctGenerate.R | 4 ctsem-2.6.4/ctsem/R/ctKalman.R | 53 ctsem-2.6.4/ctsem/R/ctModel.R | 22 ctsem-2.6.4/ctsem/R/ctPlotArray.R | 82 ctsem-2.6.4/ctsem/R/ctPostPredict.R | 4 ctsem-2.6.4/ctsem/R/ctRefineTo.R | 6 ctsem-2.6.4/ctsem/R/ctStanFit.R | 2709 ++++++++++------- ctsem-2.6.4/ctsem/R/ctStanModel.R | 132 ctsem-2.6.4/ctsem/R/ctStanParMatrices.R | 172 - ctsem-2.6.4/ctsem/R/ctStanPlotPost.R | 261 - ctsem-2.6.4/ctsem/R/ctStanPostPredict.R |only ctsem-2.6.4/ctsem/R/ctStanSummary.R | 444 +- ctsem-2.6.4/ctsem/R/ctStanTIpredeffects.R | 148 ctsem-2.6.4/ctsem/R/ctsem.R | 16 ctsem-2.6.4/ctsem/R/ctsemUtils.R | 158 ctsem-2.6.4/ctsem/R/ctsmupdate.R |only ctsem-2.6.4/ctsem/R/extract.ctStanFit.R |only ctsem-2.6.4/ctsem/R/isdiag.R |only ctsem-2.6.4/ctsem/R/plot.ctStanFit.R | 52 ctsem-2.6.4/ctsem/R/plot.ctStanModel.R | 111 ctsem-2.6.4/ctsem/R/stanWplot.R | 22 ctsem-2.6.4/ctsem/R/stan_confidenceRegion.R | 6 ctsem-2.6.4/ctsem/R/stan_postcalc.R |only ctsem-2.6.4/ctsem/R/stanmodels.R |only ctsem-2.6.4/ctsem/R/tformshapes.R |only ctsem-2.6.4/ctsem/R/zzz.R |only ctsem-2.6.4/ctsem/build/vignette.rds |binary ctsem-2.6.4/ctsem/data/ctstantestdat.rda |binary ctsem-2.6.4/ctsem/data/ctstantestfit.rda |binary ctsem-2.6.4/ctsem/data/datalist |only ctsem-2.6.4/ctsem/inst/doc/ctsem.pdf |binary ctsem-2.6.4/ctsem/inst/doc/ctsem.rnw | 4 ctsem-2.6.4/ctsem/inst/doc/hierarchical.R | 245 + ctsem-2.6.4/ctsem/inst/doc/hierarchical.pdf |binary ctsem-2.6.4/ctsem/inst/doc/hierarchical.rnw | 490 ++- ctsem-2.6.4/ctsem/inst/include |only ctsem-2.6.4/ctsem/man/Kalman.Rd | 27 ctsem-2.6.4/ctsem/man/ctCheckFit.Rd | 9 ctsem-2.6.4/ctsem/man/ctDensity.Rd | 8 ctsem-2.6.4/ctsem/man/ctFit.Rd | 2 ctsem-2.6.4/ctsem/man/ctFitR.Rd |only ctsem-2.6.4/ctsem/man/ctKalman.Rd | 2 ctsem-2.6.4/ctsem/man/ctKalmanPlot.Rd | 8 ctsem-2.6.4/ctsem/man/ctModel.Rd | 5 ctsem-2.6.4/ctsem/man/ctPlotArray.Rd | 23 ctsem-2.6.4/ctsem/man/ctPoly.Rd | 2 ctsem-2.6.4/ctsem/man/ctStanDiscretePars.Rd | 2 ctsem-2.6.4/ctsem/man/ctStanDiscreteParsPlot.Rd | 9 ctsem-2.6.4/ctsem/man/ctStanFit.Rd | 72 ctsem-2.6.4/ctsem/man/ctStanParMatrices.Rd | 14 ctsem-2.6.4/ctsem/man/ctStanParnames.Rd | 10 ctsem-2.6.4/ctsem/man/ctStanPlotPost.Rd | 14 ctsem-2.6.4/ctsem/man/ctStanPostPredict.Rd |only ctsem-2.6.4/ctsem/man/ctStanTIpredeffects.Rd | 32 ctsem-2.6.4/ctsem/man/ctsem.Rd | 8 ctsem-2.6.4/ctsem/man/ctstantestdat.Rd | 24 ctsem-2.6.4/ctsem/man/ctstantestfit.Rd | 41 ctsem-2.6.4/ctsem/man/isdiag.Rd |only ctsem-2.6.4/ctsem/man/msquare.Rd |only ctsem-2.6.4/ctsem/man/plot.ctStanFit.Rd | 6 ctsem-2.6.4/ctsem/man/plot.ctStanModel.Rd | 33 ctsem-2.6.4/ctsem/man/plot.ctsemFitMeasure.Rd |only ctsem-2.6.4/ctsem/man/stanWplot.Rd | 1 ctsem-2.6.4/ctsem/man/stan_confidenceRegion.Rd | 2 ctsem-2.6.4/ctsem/man/stan_postcalc.Rd |only ctsem-2.6.4/ctsem/man/summary.ctStanFit.Rd | 6 ctsem-2.6.4/ctsem/src |only ctsem-2.6.4/ctsem/tests/testthat/ctStanFitTests.R | 118 ctsem-2.6.4/ctsem/tests/testthat/kalmanVram.R | 4 ctsem-2.6.4/ctsem/tests/testthat/test-knownFits.R | 8 ctsem-2.6.4/ctsem/tests/testthat/test-objectiveEquiv.R | 4 ctsem-2.6.4/ctsem/tests/testthat/test-reshaping.R | 4 ctsem-2.6.4/ctsem/tests/testthat/test-stantipred.R |only ctsem-2.6.4/ctsem/tools |only ctsem-2.6.4/ctsem/vignettes/ctsem.rnw | 4 ctsem-2.6.4/ctsem/vignettes/hierarchical.rnw | 490 ++- ctsem-2.6.4/ctsem/vignettes/hierarchical.tex |only ctsem-2.6.4/ctsem/vignettes/hierarchicalrefs.bib |only 92 files changed, 4692 insertions(+), 2748 deletions(-)
Title: Pathway Enrichment Analysis Utilizing Active Subnetworks
Description: Pathway enrichment analysis enables researchers to uncover mechanisms
underlying the phenotype. pathfindR is a tool for pathway enrichment analysis
utilizing active subnetworks. It identifies active subnetworks in a
protein-protein interaction network using user-provided a list of genes.
It performs pathway enrichment analyses on the identified subnetworks.
pathfindR also offers functionalities to cluster enriched pathways and identify
representative pathways and to score the pathways per sample. The method is
described in detail in Ulgen E, Ozisik O, Sezerman OU. 2018. pathfindR: An R
Package for Pathway Enrichment Analysis Utilizing Active Subnetworks. bioRxiv.
<doi:10.1101/272450>.
Author: Ege Ulgen, Ozan Ozisik
Maintainer: Ege Ulgen <egeulgen@gmail.com>
Diff between pathfindR versions 1.1.0 dated 2018-05-14 and 1.2.0 dated 2018-06-10
pathfindR-1.1.0/pathfindR/R/cluster_pws.R |only pathfindR-1.1.0/pathfindR/man/cluster_pathways.Rd |only pathfindR-1.2.0/pathfindR/DESCRIPTION | 17 pathfindR-1.2.0/pathfindR/MD5 | 65 - pathfindR-1.2.0/pathfindR/NAMESPACE | 13 pathfindR-1.2.0/pathfindR/NEWS.md | 26 pathfindR-1.2.0/pathfindR/R/data.R | 45 - pathfindR-1.2.0/pathfindR/R/enrichment.R | 28 pathfindR-1.2.0/pathfindR/R/input_processing.R | 5 pathfindR-1.2.0/pathfindR/R/parseActive.R | 6 pathfindR-1.2.0/pathfindR/R/pathmap.R | 17 pathfindR-1.2.0/pathfindR/R/pwd.R |only pathfindR-1.2.0/pathfindR/R/scores.R |only pathfindR-1.2.0/pathfindR/R/wrapper.R | 306 +++++-- pathfindR-1.2.0/pathfindR/data/RA_clustered.rda |only pathfindR-1.2.0/pathfindR/data/RA_exp_mat.rda |only pathfindR-1.2.0/pathfindR/data/RA_output.rda |binary pathfindR-1.2.0/pathfindR/inst/doc/pathfindr_vignette.R | 67 + pathfindR-1.2.0/pathfindR/inst/doc/pathfindr_vignette.Rmd | 88 +- pathfindR-1.2.0/pathfindR/inst/doc/pathfindr_vignette.html | 429 +++++++++- pathfindR-1.2.0/pathfindR/inst/java/ActiveSubnetworkSearch.jar |binary pathfindR-1.2.0/pathfindR/inst/rmd/genes_table.Rmd | 13 pathfindR-1.2.0/pathfindR/inst/rmd/results.Rmd | 5 pathfindR-1.2.0/pathfindR/java/ActiveSubnetworkSearchAlgorithms/GAIndividual.java | 10 pathfindR-1.2.0/pathfindR/man/RA_clustered.Rd |only pathfindR-1.2.0/pathfindR/man/RA_exp_mat.Rd |only pathfindR-1.2.0/pathfindR/man/RA_input.Rd | 3 pathfindR-1.2.0/pathfindR/man/RA_output.Rd | 6 pathfindR-1.2.0/pathfindR/man/calculate_pw_scores.Rd |only pathfindR-1.2.0/pathfindR/man/calculate_pwd.Rd |only pathfindR-1.2.0/pathfindR/man/choose_clusters.Rd | 55 - pathfindR-1.2.0/pathfindR/man/enrichment.Rd | 6 pathfindR-1.2.0/pathfindR/man/enrichment_chart.Rd |only pathfindR-1.2.0/pathfindR/man/parseActiveSnwSearch.Rd | 4 pathfindR-1.2.0/pathfindR/man/pathmap.Rd | 17 pathfindR-1.2.0/pathfindR/man/plot_scores.Rd |only pathfindR-1.2.0/pathfindR/man/run_pathfindR.Rd | 33 pathfindR-1.2.0/pathfindR/vignettes/pathfindr_vignette.Rmd | 88 +- pathfindR-1.2.0/pathfindR/vignettes/pw_clustering.png |binary pathfindR-1.2.0/pathfindR/vignettes/pw_score_hmap.png |only 40 files changed, 1104 insertions(+), 248 deletions(-)
Title: Full Factorials, Orthogonal Arrays and Base Utilities for DoE
Packages
Description: Creates full factorial experimental designs and designs based on orthogonal arrays for (industrial) experiments. Provides diverse quality criteria. Provides utility functions for the class design, which is also used by other packages for designed experiments.
Author: Ulrike Groemping [aut, cre],
Boyko Amarov [ctb],
Hongquan Xu [ctb]
Maintainer: Ulrike Groemping <groemping@beuth-hochschule.de>
Diff between DoE.base versions 0.32 dated 2018-03-01 and 1.0 dated 2018-06-10
DESCRIPTION | 8 ++++---- MD5 | 13 +++++++------ R/SCFTs.R | 4 +++- inst/CITATION |only inst/NEWS | 13 ++++++++++++- man/DoE.base-package.Rd | 8 +++----- man/lowerbound_AR.Rd | 5 ++++- man/planor2design.Rd | 2 +- 8 files changed, 34 insertions(+), 19 deletions(-)
Title: Continuous Analog of a Binomial Distribution
Description: Implementation of the d/p/q/r family of functions for a continuous analog to the standard discrete binomial with continuous size parameter and continuous support with x in [0, size + 1], following Ilienko (2013) <arXiv:1303.5990>.
Author: Dan Dalthorp
Maintainer: Dan Dalthorp <ddalthorp@usgs.gov>
Diff between cbinom versions 0.0.0 dated 2018-04-10 and 1.1 dated 2018-06-10
cbinom-0.0.0/cbinom/R/cbinom.r |only cbinom-1.1/cbinom/DESCRIPTION | 8 cbinom-1.1/cbinom/MD5 | 14 - cbinom-1.1/cbinom/R/RcppExports.R | 8 cbinom-1.1/cbinom/R/cbinom.R |only cbinom-1.1/cbinom/man/cbinom-package.Rd | 2 cbinom-1.1/cbinom/man/cbinom.rd | 24 +- cbinom-1.1/cbinom/src/RcppExports.cpp | 25 ++ cbinom-1.1/cbinom/src/cbinom.cpp | 291 ++++++++++++++++++++++++-------- 9 files changed, 275 insertions(+), 97 deletions(-)
Title: Tools for Antitrust Practitioners
Description: A collection of tools for antitrust practitioners, including the ability to calibrate different consumer demand systems and simulate the effects of mergers under different competitive regimes.
Author: Charles Taragin and Michael Sandfort
Maintainer: Charles Taragin <charles.taragin@usdoj.gov>
Diff between antitrust versions 0.99.9 dated 2018-06-07 and 0.99.10 dated 2018-06-10
antitrust-0.99.10/antitrust/DESCRIPTION | 8 antitrust-0.99.10/antitrust/MD5 | 30 antitrust-0.99.10/antitrust/R/Bertrand.R | 8 antitrust-0.99.10/antitrust/R/auction2ndlogit.R | 9 antitrust-0.99.10/antitrust/R/logitNests.R | 822 ++++++------ antitrust-0.99.10/antitrust/build/partial.rdb |binary antitrust-0.99.10/antitrust/build/vignette.rds |binary antitrust-0.99.10/antitrust/inst/antitrust_shiny/rsconnect |only antitrust-0.99.10/antitrust/inst/doc/manual.pdf |binary antitrust-0.99.10/antitrust/man/Auction2ndLogit-class.Rd | 118 - antitrust-0.99.10/antitrust/man/Auction2ndLogitALM-class.Rd | 100 - antitrust-0.99.10/antitrust/man/Linear-class.Rd | 166 +- antitrust-0.99.10/antitrust/man/LogLin-class.Rd | 130 - antitrust-0.99.10/antitrust/man/LogitNestsALM-class.Rd | 110 - antitrust-0.99.10/antitrust/man/PCAIDS-class.Rd | 106 - antitrust-0.99.10/antitrust/man/PCAIDSNests-class.Rd | 116 - antitrust-0.99.9/antitrust/vignettes/Thumbs.db |only 17 files changed, 862 insertions(+), 861 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-05-17 0.7.0
2017-12-16 0.6.0
2017-10-22 0.5.1
2017-08-22 0.4.4
2017-07-18 0.4.2
2017-02-08 0.1.7
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-06-05 0.1.2
2018-05-30 0.1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-05-18 1.2.3
2018-04-13 1.2.1
2018-04-09 1.2.0
2018-01-18 1.1.9
2018-01-16 1.1.8
2017-09-22 1.1.5
2017-06-27 1.1.4
2017-06-09 1.1.3
2017-05-04 1.1.2
2017-03-15 1.1.1
2017-02-05 1.1.0
2016-12-28 1.0.3
2016-12-23 1.0.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-05-13 1.5.0
2018-04-19 1.4.2
2018-01-31 1.4.1
2018-01-24 1.4.0
2017-09-20 1.3.1
2017-09-16 1.3.0
2017-06-13 1.2.1
2017-03-26 1.2.0
2017-02-05 1.1.0
2016-12-31 1.0.2
Title: Algorithms for Implementing Free-Knot Splines
Description: Algorithms for fitting free-knot splines for data with one independent variable and one dependent variable. Four free-knot spline algorithms are provided for the case where the number of knots is known in advance. A knot-search algorithm is provided for the case where the number of knots is not known in advance. In addition, methods are available to compute the fitted values, the residuals, and the coefficients of the splines, and to plot the results, along with a method to summarize the results.
Author: Steven Spiriti <puzzlesteven@gmail.com>, Philip Smith <philip.smith@ttu.edu>, Pierre Lecuyer <lecuyer@iro.UMontreal.ca>,
Maintainer: Steven Spiriti <puzzlesteven@gmail.com>
Diff between freeknotsplines versions 1.0 dated 2012-10-04 and 1.0.1 dated 2018-06-10
DESCRIPTION | 30 ++++++++++++------------------ MD5 | 21 +++++++++++---------- NAMESPACE | 21 ++++++++++++++++++++- R/Rfunc.R | 16 +++++++++++++--- man/coef.freekt.Rd | 2 +- man/fit.search.numknots.Rd | 2 +- man/fitted.freekt.Rd | 2 +- man/freeknotfit.Rd | 2 +- man/plot.freekt.Rd | 2 +- man/summary.freekt.Rd | 2 +- src/Rinit.c |only src/psplines.c | 4 ++-- 12 files changed, 64 insertions(+), 40 deletions(-)
More information about freeknotsplines at CRAN
Permanent link
Title: Analysis and Visualisation of Ecological Communities
Description: Provides a flexible, extendable representation of an ecological community and a range of functions for analysis and visualisation, focusing on food web, body mass and numerical abundance data. Allows inter-web comparisons such as examining changes in community structure over environmental, temporal or spatial gradients.
Author: Lawrence Hudson with contributions from Dan Reuman and Rob Emerson
Maintainer: Lawrence Hudson <quicklizard@googlemail.com>
Diff between cheddar versions 0.1-631.1 dated 2018-06-09 and 0.1-633 dated 2018-06-10
cheddar-0.1-631.1/cheddar/build |only cheddar-0.1-633/cheddar/DESCRIPTION | 9 +-- cheddar-0.1-633/cheddar/MD5 | 45 ++++++++--------- cheddar-0.1-633/cheddar/NAMESPACE | 15 ++--- cheddar-0.1-633/cheddar/R/graph_trophic_links.R | 2 cheddar-0.1-633/cheddar/data/Benguela.RData |binary cheddar-0.1-633/cheddar/data/BroadstoneStream.RData |binary cheddar-0.1-633/cheddar/data/ChesapeakeBay.RData |binary cheddar-0.1-633/cheddar/data/Millstream.RData |binary cheddar-0.1-633/cheddar/data/SkipwithPond.RData |binary cheddar-0.1-633/cheddar/data/TL84.RData |binary cheddar-0.1-633/cheddar/data/TL86.RData |binary cheddar-0.1-633/cheddar/data/YthanEstuary.RData |binary cheddar-0.1-633/cheddar/data/pHWebs.RData |binary cheddar-0.1-633/cheddar/inst/doc/CheddarQuickstart.pdf |binary cheddar-0.1-633/cheddar/inst/doc/Collections.pdf |binary cheddar-0.1-633/cheddar/inst/doc/Community.pdf |binary cheddar-0.1-633/cheddar/inst/doc/ImportExport.pdf |binary cheddar-0.1-633/cheddar/inst/doc/PlotsAndStats.pdf |binary cheddar-0.1-633/cheddar/man/cheddar.Rd | 4 - cheddar-0.1-633/cheddar/src/anneal.cpp | 1 cheddar-0.1-633/cheddar/src/cheddar.cpp |only cheddar-0.1-633/cheddar/src/cheddar.h |only cheddar-0.1-633/cheddar/src/shortest_paths.cpp | 10 +++ cheddar-0.1-633/cheddar/src/trophic_chains.cpp | 31 +++++++++++ 25 files changed, 79 insertions(+), 38 deletions(-)
Title: Bayesian Spectral Analysis Models using Gaussian Process Priors
Description: Contains functions to perform Bayesian inference
using a spectral analysis of Gaussian process priors.
Gaussian processes are represented with a Fourier series
based on cosine basis functions. Currently the package
includes parametric linear models, partial linear additive
models with/without shape restrictions, generalized linear
additive models with/without shape restrictions, and
density estimation model. To maximize computational
efficiency, the actual Markov chain Monte Carlo sampling
for each model is done using codes written in FORTRAN 90.
This software has been developed using funding supported by
Basic Science Research Program through the National Research
Foundation of Korea (NRF) funded by the Ministry of Education
(no. NRF-2016R1D1A1B03932178 and no. NRF-2017R1D1A3B03035235).
Author: Seongil Jo [aut, cre],
Taeryon Choi [aut],
Beomjo Park [aut, cre],
Peter J. Lenk [ctb]
Maintainer: Beomjo Park <beomjo@korea.ac.kr>
Diff between bsamGP versions 1.1.2 dated 2018-01-03 and 1.2.0 dated 2018-06-10
DESCRIPTION | 10 MD5 | 81 ++-- NAMESPACE | 2 R/bsaq.R | 90 +++- R/bsar.R | 780 ++++++++++++++++++++++-------------------- R/bsarBig.R |only R/hidden.R | 8 R/intgrat.R |only R/plot.bsam.R | 94 ++--- R/plot.bsamdpm.R | 24 - R/plot.fitted.bsad.R | 155 ++++---- R/plot.fitted.bsam.R | 638 +++++++++++++++++----------------- R/plot.fitted.bsamdpm.R | 413 +++++++++++----------- R/predict.bsam.R | 530 ++++++++++++++-------------- R/print.bsam.R | 22 + R/print.summary.bsam.R | 37 + R/summary.bsam.R | 1 README.md | 7 data/cadmium.RData |only man/bsaq.Rd | 467 ++++++++++++------------- man/bsar.Rd | 543 ++++++++++++++--------------- man/bsarBig.Rd |only man/cadmium.Rd |only man/intgrat.Rd |only man/plot.fitted.bsad.Rd | 7 man/plot.fitted.bsam.Rd | 3 man/plot.fitted.bsamdpm.Rd | 3 src/Makevars | 3 src/ToolsRfunc.c | 4 src/ToolsRfunf.f90 | 12 src/bsamTools.f90 | 88 ++++ src/bsaqam.f90 | 183 +++++++-- src/bsaqamdpscale.f90 | 4 src/bsaram.f90 | 184 +++++++-- src/bsaramdplocationscale.f90 | 4 src/bsaramdpscale.f90 | 4 src/bsaramgetlogg.f90 | 37 + src/bsarbig.f90 |only src/gbsarlogitKS.f90 | 5 src/gbsarlogitMH.f90 | 4 src/gbsarnegbinMH.f90 | 4 src/gbsarpoisMH.f90 | 4 src/gbsarpoisgammMH.f90 | 6 src/gbsarprobitAC.f90 | 5 src/predictbsam.f90 | 38 +- 45 files changed, 2507 insertions(+), 1997 deletions(-)
Title: Bayesian Latent Variable Analysis
Description: Fit a variety of Bayesian latent variable models, including confirmatory
factor analysis, structural equation models, and latent growth curve models.
Author: Edgar Merkle [aut, cre],
Yves Rosseel [aut],
Mauricio Garnier-Villarreal [ctb],
Terrence D. Jorgensen [ctb],
Huub Hoofs [ctb],
Rens van de Schoot [ctb]
Maintainer: Edgar Merkle <merklee@missouri.edu>
Diff between blavaan versions 0.3-1 dated 2018-01-12 and 0.3-2 dated 2018-06-10
DESCRIPTION | 28 +++++-- MD5 | 45 ++++++------ NAMESPACE | 21 ++--- NEWS | 24 ++++++ R/blav_compare.R | 14 ++- R/blav_fit_measures.R | 36 +++++---- R/blav_object_inspect.R | 4 - R/blav_utils.R | 81 ++++++++++++++------- R/blavaan.R | 96 +++++++++++++++++++------- R/ctr_bayes_fit.R |only R/ctr_bayes_metrics.R |only R/dpriors.R | 37 +++++++++- R/lav_export_stan.R | 57 ++++++++++----- R/postpred.R | 177 +++++++++++++++++++++++++++++++++++++----------- R/set_inits.R | 6 + R/set_partable.R | 6 + R/set_stanpars.R | 9 +- inst/CITATION | 33 ++++---- man/bcfa.Rd | 9 +- man/bgrowth.Rd | 9 +- man/blavFitIndices.Rd |only man/blavInspect.Rd | 6 + man/blavaan.Rd | 12 +-- man/bsem.Rd | 9 +- man/dpriors.Rd | 5 - 25 files changed, 513 insertions(+), 211 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-06-06 3.8.8
Title: Apps for Teaching Statistics, R Programming, and Shiny App
Development
Description: Contains apps and gadgets for teaching data analysis and
statistics concepts along with how to implement them in R. Includes
tools to make app development easier and faster by nesting apps together.
Author: Jason Freels [aut, cre],
Bradley Boehmke [ctb]
Maintainer: Jason Freels <auburngrads@live.com>
Diff between teachingApps versions 1.0.2 dated 2017-07-14 and 1.0.4 dated 2018-06-10
teachingApps-1.0.2/teachingApps/src/rcpp_hello_world.cpp |only teachingApps-1.0.4/teachingApps/DESCRIPTION | 22 teachingApps-1.0.4/teachingApps/MD5 | 235 teachingApps-1.0.4/teachingApps/NAMESPACE | 31 teachingApps-1.0.4/teachingApps/R/RcppExports.R | 455 - teachingApps-1.0.4/teachingApps/R/add_update.R | 3 teachingApps-1.0.4/teachingApps/R/gadget_clean_columns.R |only teachingApps-1.0.4/teachingApps/R/gadget_lm.R |only teachingApps-1.0.4/teachingApps/R/inst.R |only teachingApps-1.0.4/teachingApps/R/teachingApp.R | 12 teachingApps-1.0.4/teachingApps/R/teachingApps.R | 2 teachingApps-1.0.4/teachingApps/README.md | 17 teachingApps-1.0.4/teachingApps/inst/apps/acceptance_mtbf/global.R | 2 teachingApps-1.0.4/teachingApps/inst/apps/acceptance_mtbf_mini/global.R | 2 teachingApps-1.0.4/teachingApps/inst/apps/acceptance_proportion/global.R | 2 teachingApps-1.0.4/teachingApps/inst/apps/acceptance_testing_mtbf/global.R | 2 teachingApps-1.0.4/teachingApps/inst/apps/basic_dashboard/global.R | 2 teachingApps-1.0.4/teachingApps/inst/apps/bathtub_hazard/global.R | 2 teachingApps-1.0.4/teachingApps/inst/apps/bayesian_basic/global.R | 2 teachingApps-1.0.4/teachingApps/inst/apps/complex_ideas/global.R | 2 teachingApps-1.0.4/teachingApps/inst/apps/confidence_intervals/global.R | 2 teachingApps-1.0.4/teachingApps/inst/apps/confidence_intervals/intro.Rmd |only teachingApps-1.0.4/teachingApps/inst/apps/confidence_intervals/server.R | 76 teachingApps-1.0.4/teachingApps/inst/apps/confidence_intervals/ui.R | 32 teachingApps-1.0.4/teachingApps/inst/apps/confidence_intervals_simulation |only teachingApps-1.0.4/teachingApps/inst/apps/crossing_distributions/global.R | 2 teachingApps-1.0.4/teachingApps/inst/apps/crossing_distributions2/global.R | 2 teachingApps-1.0.4/teachingApps/inst/apps/data_science/global.R | 2 teachingApps-1.0.4/teachingApps/inst/apps/degradation_failure/global.R | 2 teachingApps-1.0.4/teachingApps/inst/apps/diagram_both/global.R | 2 teachingApps-1.0.4/teachingApps/inst/apps/diagram_nonrepairable/global.R | 2 teachingApps-1.0.4/teachingApps/inst/apps/diagram_repairable/global.R | 2 teachingApps-1.0.4/teachingApps/inst/apps/diagrammer_network/global.R | 2 teachingApps-1.0.4/teachingApps/inst/apps/dice_roll/global.R | 2 teachingApps-1.0.4/teachingApps/inst/apps/distribution_beta/beta-func.Rmd | 20 teachingApps-1.0.4/teachingApps/inst/apps/distribution_beta/beta-props.Rmd | 2 teachingApps-1.0.4/teachingApps/inst/apps/distribution_beta/global.R | 2 teachingApps-1.0.4/teachingApps/inst/apps/distribution_beta/overview.Rmd |only teachingApps-1.0.4/teachingApps/inst/apps/distribution_beta/server.R | 2 teachingApps-1.0.4/teachingApps/inst/apps/distribution_beta/ui.R | 5 teachingApps-1.0.4/teachingApps/inst/apps/distribution_beta_functions/global.R | 2 teachingApps-1.0.4/teachingApps/inst/apps/distribution_beta_functions/server.R | 14 teachingApps-1.0.4/teachingApps/inst/apps/distribution_beta_functions/ui.R | 13 teachingApps-1.0.4/teachingApps/inst/apps/distribution_binomial/binom-func.Rmd |only teachingApps-1.0.4/teachingApps/inst/apps/distribution_binomial/binom-props.Rmd |only teachingApps-1.0.4/teachingApps/inst/apps/distribution_binomial/global.R | 2 teachingApps-1.0.4/teachingApps/inst/apps/distribution_binomial/server.R | 59 teachingApps-1.0.4/teachingApps/inst/apps/distribution_binomial/ui.R | 56 teachingApps-1.0.4/teachingApps/inst/apps/distribution_binomial_functions |only teachingApps-1.0.4/teachingApps/inst/apps/distribution_bisa/bisa-func.Rmd |only teachingApps-1.0.4/teachingApps/inst/apps/distribution_bisa/bisa-props.Rmd |only teachingApps-1.0.4/teachingApps/inst/apps/distribution_bisa/global.R | 3 teachingApps-1.0.4/teachingApps/inst/apps/distribution_bisa/server.R | 49 teachingApps-1.0.4/teachingApps/inst/apps/distribution_bisa/ui.R | 56 teachingApps-1.0.4/teachingApps/inst/apps/distribution_bisa_functions |only teachingApps-1.0.4/teachingApps/inst/apps/distribution_exponential/global.R | 2 teachingApps-1.0.4/teachingApps/inst/apps/distribution_exponential_functions/global.R | 2 teachingApps-1.0.4/teachingApps/inst/apps/distribution_gamma/gamma-func.Rmd |only teachingApps-1.0.4/teachingApps/inst/apps/distribution_gamma/gamma-props.Rmd |only teachingApps-1.0.4/teachingApps/inst/apps/distribution_gamma/global.R | 2 teachingApps-1.0.4/teachingApps/inst/apps/distribution_gamma/server.R | 48 teachingApps-1.0.4/teachingApps/inst/apps/distribution_gamma/ui.R | 55 teachingApps-1.0.4/teachingApps/inst/apps/distribution_gamma_functions |only teachingApps-1.0.4/teachingApps/inst/apps/distribution_geometric/geo-func.Rmd | 13 teachingApps-1.0.4/teachingApps/inst/apps/distribution_geometric/geo-props.Rmd | 21 teachingApps-1.0.4/teachingApps/inst/apps/distribution_geometric/global.R | 2 teachingApps-1.0.4/teachingApps/inst/apps/distribution_geometric/server.R | 2 teachingApps-1.0.4/teachingApps/inst/apps/distribution_geometric_functions/global.R | 2 teachingApps-1.0.4/teachingApps/inst/apps/distribution_hypergeometric/global.R | 2 teachingApps-1.0.4/teachingApps/inst/apps/distribution_hypergeometric/hyper-func.Rmd |only teachingApps-1.0.4/teachingApps/inst/apps/distribution_hypergeometric/hyper-props.Rmd |only teachingApps-1.0.4/teachingApps/inst/apps/distribution_hypergeometric/server.R | 59 teachingApps-1.0.4/teachingApps/inst/apps/distribution_hypergeometric/ui.R | 54 teachingApps-1.0.4/teachingApps/inst/apps/distribution_hypergeometric_functions |only teachingApps-1.0.4/teachingApps/inst/apps/distribution_lev/global.R | 2 teachingApps-1.0.4/teachingApps/inst/apps/distribution_lev_functions/global.R | 2 teachingApps-1.0.4/teachingApps/inst/apps/distribution_logistic/global.R | 2 teachingApps-1.0.4/teachingApps/inst/apps/distribution_logistic/log-props.Rmd | 20 teachingApps-1.0.4/teachingApps/inst/apps/distribution_logistic_functions/global.R | 2 teachingApps-1.0.4/teachingApps/inst/apps/distribution_loglogistic/global.R | 2 teachingApps-1.0.4/teachingApps/inst/apps/distribution_loglogistic/llog-props.Rmd | 19 teachingApps-1.0.4/teachingApps/inst/apps/distribution_loglogistic_functions/global.R | 2 teachingApps-1.0.4/teachingApps/inst/apps/distribution_lognormal/global.R | 2 teachingApps-1.0.4/teachingApps/inst/apps/distribution_lognormal/lnor-props.Rmd | 19 teachingApps-1.0.4/teachingApps/inst/apps/distribution_lognormal_functions/global.R | 2 teachingApps-1.0.4/teachingApps/inst/apps/distribution_normal/global.R | 2 teachingApps-1.0.4/teachingApps/inst/apps/distribution_normal/nor-props.Rmd | 31 teachingApps-1.0.4/teachingApps/inst/apps/distribution_normal_functions/global.R | 2 teachingApps-1.0.4/teachingApps/inst/apps/distribution_poisson/global.R | 2 teachingApps-1.0.4/teachingApps/inst/apps/distribution_poisson/poi-func.Rmd | 13 teachingApps-1.0.4/teachingApps/inst/apps/distribution_poisson/poi-props.Rmd | 18 teachingApps-1.0.4/teachingApps/inst/apps/distribution_poisson_functions/global.R | 2 teachingApps-1.0.4/teachingApps/inst/apps/distribution_sev/global.R | 2 teachingApps-1.0.4/teachingApps/inst/apps/distribution_sev/sev-props.Rmd | 19 teachingApps-1.0.4/teachingApps/inst/apps/distribution_sev_functions/global.R | 2 teachingApps-1.0.4/teachingApps/inst/apps/distribution_weibull/global.R | 2 teachingApps-1.0.4/teachingApps/inst/apps/distribution_weibull_functions/global.R | 2 teachingApps-1.0.4/teachingApps/inst/apps/htmlwidgets_shiny/global.R | 2 teachingApps-1.0.4/teachingApps/inst/apps/kernel_density/global.R | 2 teachingApps-1.0.4/teachingApps/inst/apps/location_scale/global.R | 2 teachingApps-1.0.4/teachingApps/inst/apps/log_location_scale/global.R | 2 teachingApps-1.0.4/teachingApps/inst/apps/logistics_performance/global.R | 2 teachingApps-1.0.4/teachingApps/inst/apps/mathjax_example/global.R | 2 teachingApps-1.0.4/teachingApps/inst/apps/maximum_likelihood/global.R | 2 teachingApps-1.0.4/teachingApps/inst/apps/maximum_likelihood_simulation/global.R | 2 teachingApps-1.0.4/teachingApps/inst/apps/nesting_demo/global.R | 4 teachingApps-1.0.4/teachingApps/inst/apps/overview_network/global.R | 2 teachingApps-1.0.4/teachingApps/inst/apps/power_calculator/global.R | 2 teachingApps-1.0.4/teachingApps/inst/apps/random_generator/global.R | 2 teachingApps-1.0.4/teachingApps/inst/apps/sankey_network/global.R | 2 teachingApps-1.0.4/teachingApps/inst/apps/sankey_network/server.R | 29 teachingApps-1.0.4/teachingApps/inst/apps/smc_risk/global.R | 2 teachingApps-1.0.4/teachingApps/inst/teachingApps/css/teachingApps.css | 8 teachingApps-1.0.4/teachingApps/inst/teachingApps/font-awesome-4.5.0/css/font-awesome.css | 4170 +++++----- teachingApps-1.0.4/teachingApps/inst/teachingApps/font-awesome-4.5.0/css/font-awesome.min.css | 22 teachingApps-1.0.4/teachingApps/man/beta4.Rd |only teachingApps-1.0.4/teachingApps/man/figures |only teachingApps-1.0.4/teachingApps/man/gadget_clean_columns.Rd |only teachingApps-1.0.4/teachingApps/man/gadget_lm.Rd |only teachingApps-1.0.4/teachingApps/man/inst.Rd |only teachingApps-1.0.4/teachingApps/man/teachingApp.Rd | 5 teachingApps-1.0.4/teachingApps/src/Makevars |only teachingApps-1.0.4/teachingApps/src/RcppExports.cpp | 134 teachingApps-1.0.4/teachingApps/src/beta_funcs.cpp |only 124 files changed, 2933 insertions(+), 3106 deletions(-)