Title: Weighted Dependence Measures
Description: Provides efficient implementations of weighted dependence measures
and related asymptotic tests for independence. Implemented measures are
the Pearson correlation, Spearman's rho, Kendall's tau, Blomqvist's beta, and
Hoeffding's D; see, e.g., Nelsen (2006) <doi:10.1007/0-387-28678-0> and
Hollander et al. (2015, ISBN:9780470387375).
Author: Thomas Nagler [aut, cre]
Maintainer: Thomas Nagler <mail@tnagler.com>
Diff between wdm versions 0.1.0 dated 2018-05-30 and 0.1.1 dated 2018-06-12
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 7 +++++++ build/partial.rdb |binary inst/include/wdm/utils.hpp | 2 +- 5 files changed, 15 insertions(+), 8 deletions(-)
Title: Tight Clustering
Description: The functions needed to perform tight clustering Algorithm.
Author: George C. Tseng <ctseng@pitt.edu>, Wing H. Wong <whwong@stanford.edu>
Maintainer: Chi Song <song.1188@osu.edu>
Diff between tightClust versions 1.0 dated 2012-08-29 and 1.1 dated 2018-06-12
DESCRIPTION | 17 ++++++++--------- MD5 | 8 ++++---- NAMESPACE | 6 ++++++ data/tclust.test.data.rda |binary man/tight.clust.Rd | 5 ++++- 5 files changed, 22 insertions(+), 14 deletions(-)
Title: R-Friendly Threading in C++
Description: Provides a C++11-style thread class and thread pool that can safely
be interrupted from R.
Author: Thomas Nagler [aut, cre]
Maintainer: Thomas Nagler <mail@tnagler.com>
Diff between RcppThread versions 0.3.0 dated 2018-05-22 and 0.4.0 dated 2018-06-12
DESCRIPTION | 6 MD5 | 10 NEWS.md | 17 - inst/doc/RcppThread.html | 483 ++++++++++----------------------- inst/include/RcppThread/ThreadPool.hpp | 16 - src/test.cpp | 6 6 files changed, 190 insertions(+), 348 deletions(-)
Title: Reproducibility for Interval-Censored Data
Description: Calculates intraclass correlation coefficient (ICC) for assessing reproducibility of interval-censored data with two repeated measurements (Kovacic and Varnai (2014) <doi:10.1097/EDE.0000000000000139>). ICC is estimated by maximum likelihood from model with one fixed and one random effect (both intercepts). Help in model checking (normality of subjects' means and residuals) is provided.
Author: Jelena Kovacic
Maintainer: Jelena Kovacic <jkovacic@imi.hr>
Diff between iRepro versions 1.0 dated 2014-05-08 and 1.1 dated 2018-06-12
iRepro-1.0/iRepro/R/intervalICC.default.R |only iRepro-1.0/iRepro/R/ntest.means.default.R |only iRepro-1.0/iRepro/R/ntest.res.default.R |only iRepro-1.1/iRepro/DESCRIPTION | 10 - iRepro-1.1/iRepro/MD5 | 45 +++---- iRepro-1.1/iRepro/NAMESPACE | 13 ++ iRepro-1.1/iRepro/R/iRepro-internal.R | 145 +++++++++++++++++++++---- iRepro-1.1/iRepro/R/intervalICC.R | 115 +++++++++++++++++++ iRepro-1.1/iRepro/R/ntest.means.R | 37 ++++++ iRepro-1.1/iRepro/R/ntest.res.R | 43 +++++++ iRepro-1.1/iRepro/R/print.ICCfit.R | 1 iRepro-1.1/iRepro/R/print.ntestRes.R | 1 iRepro-1.1/iRepro/R/print.summary.ICCfit.R | 1 iRepro-1.1/iRepro/R/print.summary.ntestMeans.R | 1 iRepro-1.1/iRepro/R/print.summary.ntestRes.R | 1 iRepro-1.1/iRepro/R/summary.ICCfit.R | 1 iRepro-1.1/iRepro/R/summary.ntestMeans.R | 1 iRepro-1.1/iRepro/R/summary.ntestRes.R | 1 iRepro-1.1/iRepro/man/iRepro-package.Rd | 9 - iRepro-1.1/iRepro/man/intervalICC.Rd | 5 iRepro-1.1/iRepro/man/ntest.means.Rd | 4 iRepro-1.1/iRepro/man/ntest.res.Rd | 3 iRepro-1.1/iRepro/man/summary.ICCfit.Rd | 2 iRepro-1.1/iRepro/man/summary.ntestMeans.Rd | 2 iRepro-1.1/iRepro/man/summary.ntestRes.Rd | 2 25 files changed, 367 insertions(+), 76 deletions(-)
Title: Identify Global Objects in R Expressions
Description: Identifies global ("unknown" or "free") objects in R expressions
by code inspection using various strategies, e.g. conservative or liberal.
The objective of this package is to make it as simple as possible to
identify global objects for the purpose of exporting them in distributed
compute environments.
Author: Henrik Bengtsson [aut, cre, cph]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between globals versions 0.11.0 dated 2018-01-10 and 0.12.0 dated 2018-06-12
DESCRIPTION | 6 ++-- MD5 | 21 +++++++------- NEWS | 16 ++++++++++ R/Globals-class.R | 16 +++++----- R/findGlobals.R | 28 ++++++++++++++++-- R/globalsOf.R | 12 ++++---- R/packagesOf.R | 2 - R/utils.R | 31 +++++++++++++++++++- R/walkAST.R | 2 - R/where.R | 6 ++-- inst |only tests/globalsOf.R | 81 ++++++++++++++++++++++++++++++++++++++++++++++++++++++ 12 files changed, 183 insertions(+), 38 deletions(-)
Title: Time Uncertain Time Series Analysis
Description: Models of time-uncertain time series addressing frequency and non-frequency behavior of continuous and discrete (counting) data.
Author: Peter Franke [aut, cre],
Andrew Parnell [aut]
Maintainer: Peter Franke <peter.franke@ucdconnect.ie>
Diff between tuts versions 0.1.0 dated 2018-06-10 and 0.1.1 dated 2018-06-12
DESCRIPTION | 8 +++---- MD5 | 28 ++++++++++++------------ R/a_tuPN.R | 4 +-- R/a_tuar1.R | 6 ++--- R/a_tuar1redf.R | 50 ++++++++++++++++++++++---------------------- R/a_tubfs.R | 2 - R/b_tupoisBFS.R | 4 +-- R/b_tupoisPN.R | 6 ++--- man/plot.tuts_ar1redf.Rd | 2 - man/summary.tuts_ar1.Rd | 2 - man/summary.tuts_ar1redf.Rd | 2 - man/tuar1.Rd | 2 - man/tuar1redf.Rd | 2 - man/tupoispn.Rd | 2 - man/tupolyn.Rd | 2 - 15 files changed, 61 insertions(+), 61 deletions(-)
Title: Character String Processing Facilities
Description: Allows for fast, correct, consistent, portable,
as well as convenient character string/text processing in every locale
and any native encoding. Owing to the use of the 'ICU' library,
the package provides 'R' users with platform-independent functions
known to 'Java', 'Perl', 'Python', 'PHP', and 'Ruby' programmers. Available
features include: pattern searching (e.g., with 'Java'-like regular
expressions or the 'Unicode' collation algorithm), random string generation,
case mapping, string transliteration, concatenation,
Unicode normalization, date-time formatting and parsing, and many more.
Author: Marek Gagolewski [aut, cre], Bartek Tartanus [ctb],
and other contributors (stringi source code);
IBM and other contributors (ICU4C source code);
Unicode, Inc. (Unicode Character Database)
Maintainer: Marek Gagolewski <gagolews@rexamine.com>
Diff between stringi versions 1.2.2 dated 2018-05-02 and 1.2.3 dated 2018-06-12
DESCRIPTION | 9 MD5 | 8 NEWS | 7 R/install.R | 9 configure | 848 +++++++++++++++++++++++++++++++----------------------------- 5 files changed, 468 insertions(+), 413 deletions(-)
Title: Modelling Tools for Reproduction and Survival Data in
Ecotoxicology
Description: Tools for ecotoxicologists and regulators dedicated to the
mathematical and statistical modelling of toxicity test data. They use advanced and
innovative methods for a valuable quantitative environmental risk assessment.
Author: Virgile Baudrot [aut],
Sandrine Charles [aut],
Marie Laure Delignette-Muller [aut],
Wandrille Duchemin [ctb],
Guillaume Kon-Kam-King [ctb],
Christelle Lopes [ctb],
Philippe Ruiz [aut],
Philippe Veber [aut]
Maintainer: Philippe Veber <philippe.veber@univ-lyon1.fr>
Diff between morse versions 3.1.0 dated 2018-06-05 and 3.1.1 dated 2018-06-12
DESCRIPTION | 6 MD5 | 16 NEWS | 6 R/MFx.survFit.R | 4 R/plot.MFx.R | 4 inst/doc/modelling.pdf |binary inst/doc/tutorial.Rmd | 143 ++++---- inst/doc/tutorial.html | 802 ++++++++++++++++++++++++------------------------- vignettes/tutorial.Rmd | 143 ++++---- 9 files changed, 569 insertions(+), 555 deletions(-)
Title: Particle Swarm Optimisation, with Focus on Environmental Models
Description: State-of-the-art version of the Particle Swarm Optimisation (PSO) algorithm (SPSO-2011 and SPSO-2007 capable). hydroPSO can be used as a replacement of the 'optim' R function for (global) optimization of non-smooth and non-linear functions. However, the main focus of hydroPSO is the calibration of environmental and other real-world models that need to be executed from the system console. hydroPSO is model-independent, allowing the user to easily interface any computer simulation model with the calibration engine (PSO). hydroPSO communicates with the model through the model's own input and output files, without requiring access to the model's source code. Several PSO variants and controlling options are included to fine-tune the performance of the calibration engine to different calibration problems. An advanced sensitivity analysis function together with user-friendly plotting summaries facilitate the interpretation and assessment of the calibration results. hydroPSO is parallel-capable, to alleviate the computational burden of complex models with "long" execution time. Bugs reports/comments/questions are very welcomed (in English, Spanish or Italian). See Zambrano-Bigiarini and Rojas (2013) <doi:10.1016/j.envsoft.2013.01.004> for more details.
Author: Mauricio Zambrano-Bigiarini [aut, cre],
Rodrigo Rojas [ctb]
Maintainer: Mauricio Zambrano-Bigiarini <mzb.devel@gmail.com>
Diff between hydroPSO versions 0.3-4 dated 2014-04-12 and 0.4-1 dated 2018-06-12
DESCRIPTION | 26 ++++---- MD5 | 34 +++++------ NAMESPACE | 29 +++++++-- NEWS | 26 ++++++++ R/PSO_v2013.R | 29 +++++---- R/hydromod.R | 10 +-- R/lhoat.R | 141 +++++++++++++++++++++++------------------------- R/plot_out.R | 8 +- R/plot_params.R | 41 ++++++------- R/plot_particles.R | 8 +- R/plot_results.R | 5 + R/read_out.R | 7 +- R/test_functions.R | 10 +-- R/zl.R | 4 - inst/CITATION | 20 +++--- man/hydroPSO-package.Rd | 14 ++-- man/hydroPSO.Rd | 9 ++- man/test_functions.Rd | 13 ++-- 18 files changed, 240 insertions(+), 194 deletions(-)
Title: Epimed Solutions Collection for Data Editing, Analysis, and
Benchmarking of Health Units
Description: Collection of functions for data analysis and
editing of clinical and epidemiological data.
Most of them are related to benchmarking with prediction models.
Author: Lunna Borges [aut],
Pedro Brasil [aut, cre]
Maintainer: Pedro Brasil <pedro.brasil@epimedsolutions.com>
Diff between ems versions 1.0.0 dated 2017-11-28 and 1.1.5 dated 2018-06-12
DESCRIPTION | 14 +-- MD5 | 34 ++++---- NAMESPACE | 4 R/SMR.R | 44 +++++----- R/SRU.R | 34 ++++---- R/dataquality.R | 213 ++++++++++++++++++++++++++++++++++++++++++++------- R/funnel.R | 4 R/icu.R | 12 -- R/miscellaneous.R | 147 +++++++++++++++++++++++++++++++++-- R/reclass.R | 12 +- R/tableStack.R |only man/SMR.Rd | 7 - man/SRU.Rd | 17 +--- man/dataquality.Rd | 56 ++++++++----- man/funnel.Rd | 7 - man/icu.Rd | 1 man/miscellaneous.Rd | 71 ++++++++++++++--- man/reclass.Rd | 11 +- man/tableStack.Rd |only 19 files changed, 519 insertions(+), 169 deletions(-)
Title: A Package for Learning Statistics
Description: Some simple objects and functions to do
statistics using linear models and a Bayesian framework.
Author: Petter Mostad <mostad@chalmers.se>
Maintainer: Petter Mostad <mostad@chalmers.se>
Diff between lestat versions 1.8 dated 2013-11-21 and 1.9 dated 2018-06-12
DESCRIPTION | 13 MD5 | 10 NAMESPACE | 728 +++++++++++++++++++++++++++++++--------------------- R/lestat.R | 10 man/compose.Rd | 1 man/mnormalgamma.Rd | 6 6 files changed, 469 insertions(+), 299 deletions(-)
Title: Estimate Global Clustering in Infectious Disease
Description: Implements various novel and standard
clustering statistics and other analyses useful for understanding the
spread of infectious disease.
Author: Justin Lessler <justin@jhu.edu>, Henrik Salje <hsalje@jhsph.edu>, John Giles <gilesjohnr@gmail.com>
Maintainer: Justin Lessler <justin@jhu.edu>
Diff between IDSpatialStats versions 0.3.4 dated 2018-06-05 and 0.3.5 dated 2018-06-12
DESCRIPTION | 8 - MD5 | 30 +++---- R/examples/est_transdist_bootstrap_ci.R | 3 R/examples/est_transdist_temporal.R | 11 +- R/examples/est_transdist_temporal_bootstrap_ci.R | 13 ++- R/transdistfuncs.r | 60 +++++++++----- inst/doc/transdist.R | 92 ++++++++++----------- inst/doc/transdist.Rmd | 98 +++++++++++------------ inst/doc/transdist.html | 94 ++++++++++------------ man/est.transdist.bootstrap.ci.Rd | 10 +- man/est.transdist.temporal.Rd | 19 ++-- man/est.transdist.temporal.bootstrap.ci.Rd | 22 +++-- vignettes/figs/fmd.png |binary vignettes/figs/td_temp.png |binary vignettes/figs/td_temp_ci.png |binary vignettes/transdist.Rmd | 98 +++++++++++------------ 16 files changed, 298 insertions(+), 260 deletions(-)
More information about IDSpatialStats at CRAN
Permanent link
Title: Tools for Single Cell Genomics
Description: A toolkit for quality control, analysis, and exploration of single cell RNA sequencing data. 'Seurat' aims to enable users to identify and interpret sources of heterogeneity from single cell transcriptomic measurements, and to integrate diverse types of single cell data. See Satija R, Farrell J, Gennert D, et al (2015) <doi:10.1038/nbt.3192>, Macosko E, Basu A, Satija R, et al (2015) <doi:10.1016/j.cell.2015.05.002>, and Butler A and Satija R (2017) <doi:10.1101/164889> for more details.
Author: Rahul Satija [aut] (<https://orcid.org/0000-0001-9448-8833>),
Andrew Butler [aut] (<https://orcid.org/0000-0003-3608-0463>),
Paul Hoffman [aut, cre] (<https://orcid.org/0000-0002-7693-8957>),
Jeff Farrell [ctb],
Shiwei Zheng [ctb] (<https://orcid.org/0000-0001-6682-6743>),
Christoph Hafemeister [ctb] (<https://orcid.org/0000-0001-6365-8254>),
Patrick Roelli [ctb]
Maintainer: Paul Hoffman <seuratpackage@gmail.com>
Diff between Seurat versions 2.3.1 dated 2018-05-06 and 2.3.2 dated 2018-06-12
Seurat-2.3.1/Seurat/man/show-methods.Rd |only Seurat-2.3.2/Seurat/DESCRIPTION | 20 Seurat-2.3.2/Seurat/MD5 | 90 ++-- Seurat-2.3.2/Seurat/NAMESPACE | 14 Seurat-2.3.2/Seurat/NEWS.md | 6 Seurat-2.3.2/Seurat/R/alignment.R | 4 Seurat-2.3.2/Seurat/R/cluster_determination.R | 8 Seurat-2.3.2/Seurat/R/conversion.R | 37 + Seurat-2.3.2/Seurat/R/differential_expression.R | 6 Seurat-2.3.2/Seurat/R/differential_expression_internal.R | 6 Seurat-2.3.2/Seurat/R/dimensional_reduction.R | 225 +++++++++- Seurat-2.3.2/Seurat/R/dimensional_reduction_internal.R | 19 Seurat-2.3.2/Seurat/R/dimensional_reduction_utilities.R | 6 Seurat-2.3.2/Seurat/R/interaction.R | 161 +++++-- Seurat-2.3.2/Seurat/R/jackstraw.R | 1 Seurat-2.3.2/Seurat/R/jackstraw_internal.R | 2 Seurat-2.3.2/Seurat/R/multi_modal.R | 72 ++- Seurat-2.3.2/Seurat/R/plotting.R | 29 + Seurat-2.3.2/Seurat/R/plotting_internal.R | 14 Seurat-2.3.2/Seurat/R/preprocessing.R | 94 +++- Seurat-2.3.2/Seurat/R/preprocessing_internal.R | 70 +-- Seurat-2.3.2/Seurat/R/seurat.R | 20 Seurat-2.3.2/Seurat/R/spatial.R | 2 Seurat-2.3.2/Seurat/R/spatial_internal.R | 11 Seurat-2.3.2/Seurat/R/utilities.R | 2 Seurat-2.3.2/Seurat/R/utilities_internal.R | 10 Seurat-2.3.2/Seurat/man/DimPlot.Rd | 12 Seurat-2.3.2/Seurat/man/FeaturePlot.Rd | 6 Seurat-2.3.2/Seurat/man/FindVariableGenes.Rd | 13 Seurat-2.3.2/Seurat/man/GetAssayData.Rd | 7 Seurat-2.3.2/Seurat/man/JackStrawPlot.Rd | 4 Seurat-2.3.2/Seurat/man/MergeSeurat.Rd | 4 Seurat-2.3.2/Seurat/man/Read10X_h5.Rd |only Seurat-2.3.2/Seurat/man/RenameCells.Rd |only Seurat-2.3.2/Seurat/man/RunMultiCCA.Rd | 7 Seurat-2.3.2/Seurat/man/RunPHATE.Rd |only Seurat-2.3.2/Seurat/man/RunUMAP.Rd | 5 Seurat-2.3.2/Seurat/man/SampleUMI.Rd | 2 Seurat-2.3.2/Seurat/man/SetAssayData.Rd | 8 Seurat-2.3.2/Seurat/man/SubsetByPredicate.Rd | 4 Seurat-2.3.2/Seurat/src/Makevars | 1 Seurat-2.3.2/Seurat/src/data_manipulation.cpp | 18 Seurat-2.3.2/Seurat/tests/testthat/Rplots.pdf |only Seurat-2.3.2/Seurat/tests/testthat/test_alignment.R | 6 Seurat-2.3.2/Seurat/tests/testthat/test_cluster_determination.R | 12 Seurat-2.3.2/Seurat/tests/testthat/test_differential_expression.R |only Seurat-2.3.2/Seurat/tests/testthat/test_interaction.R | 61 ++ Seurat-2.3.2/Seurat/tests/testthat/test_preprocessing.R | 5 Seurat-2.3.2/Seurat/tests/testthat/test_seurat_object.R | 16 49 files changed, 882 insertions(+), 238 deletions(-)
Title: Fits a Principal Curve in Arbitrary Dimension
Description: Fitting a principal curve to a data matrix in arbitrary dimensions.
Author: Trevor Hastie [aut],
Andreas Weingessel [aut],
Kurt Hornik [aut],
Robrecht Cannoodt [aut, cre]
Maintainer: Robrecht Cannoodt <rcannood@gmail.com>
Diff between princurve versions 1.1-12 dated 2013-04-25 and 2.0.2 dated 2018-06-12
princurve-1.1-12/princurve/ChangeLog |only princurve-1.1-12/princurve/R/principal.curve.R |only princurve-1.1-12/princurve/README |only princurve-2.0.2/princurve/CHANGELOG |only princurve-2.0.2/princurve/DESCRIPTION | 27 ++++- princurve-2.0.2/princurve/MD5 | 28 ++++-- princurve-2.0.2/princurve/NAMESPACE | 25 ++++- princurve-2.0.2/princurve/R/adjust_range.R |only princurve-2.0.2/princurve/R/bias_correct_curve.R |only princurve-2.0.2/princurve/R/package.R |only princurve-2.0.2/princurve/R/periodic_lowess.R |only princurve-2.0.2/princurve/R/principal_curve.R |only princurve-2.0.2/princurve/R/project_to_curve.R |only princurve-2.0.2/princurve/R/start_circle.R |only princurve-2.0.2/princurve/README.md |only princurve-2.0.2/princurve/man/figures |only princurve-2.0.2/princurve/man/get.lam.Rd | 44 ++------- princurve-2.0.2/princurve/man/principal.curve.Rd | 98 +++++---------------- princurve-2.0.2/princurve/man/principal_curve.Rd |only princurve-2.0.2/princurve/man/princurve-package.Rd |only princurve-2.0.2/princurve/man/project_to_curve.Rd |only princurve-2.0.2/princurve/src/princurve_init.c |only princurve-2.0.2/princurve/tests |only 23 files changed, 95 insertions(+), 127 deletions(-)
Title: Another Plot Package: 'Bagplots', 'Iconplots', 'Summaryplots',
Slider Functions and Others
Description: Some functions for drawing some special plots:
The function 'bagplot' plots a bagplot,
'faces' plots chernoff faces,
'iconplot' plots a representation of a frequency table or a data matrix,
'plothulls' plots hulls of a bivariate data set,
'plotsummary' plots a graphical summary of a data set,
'puticon' adds icons to a plot,
'skyline.hist' combines several histograms of a one dimensional data set in one plot,
'slider' functions supports some interactive graphics,
'spin3R' helps an inspection of a 3-dim point cloud,
'stem.leaf' plots a stem and leaf plot,
'stem.leaf.backback' plots back-to-back versions of stem and leaf plot.
Author: Hans Peter Wolf [aut, cre]
Maintainer: Hans Peter Wolf <pwolf@wiwi.uni-bielefeld.de>
Diff between aplpack versions 1.3.0 dated 2014-09-26 and 1.3.2 dated 2018-06-12
aplpack-1.3.0/aplpack/vignettes/p2009-Dec1-183041.jpg |only aplpack-1.3.0/aplpack/vignettes/stem-and-leaf.jpg |only aplpack-1.3.2/aplpack/DESCRIPTION | 44 ++++---- aplpack-1.3.2/aplpack/MD5 | 57 ++++++---- aplpack-1.3.2/aplpack/NAMESPACE | 8 + aplpack-1.3.2/aplpack/R/bagplot.R | 8 + aplpack-1.3.2/aplpack/R/faces.R | 4 aplpack-1.3.2/aplpack/R/iconplot.R |only aplpack-1.3.2/aplpack/R/plot.faces.R | 4 aplpack-1.3.2/aplpack/R/puticon.R |only aplpack-1.3.2/aplpack/R/slider.R | 34 +++--- aplpack-1.3.2/aplpack/R/spin3R.R | 97 ++++++++++-------- aplpack-1.3.2/aplpack/R/stem.leaf.R | 32 +++-- aplpack-1.3.2/aplpack/build/vignette.rds |binary aplpack-1.3.2/aplpack/inst/CITATION |only aplpack-1.3.2/aplpack/inst/doc/ms.pdf |binary aplpack-1.3.2/aplpack/inst/doc/slider-make.pdf |binary aplpack-1.3.2/aplpack/inst/doc/sliderfns.Snw | 2 aplpack-1.3.2/aplpack/inst/doc/sliderfns.pdf |binary aplpack-1.3.2/aplpack/inst/src/R.pnm |only aplpack-1.3.2/aplpack/inst/src/bagplot.rev | 33 ++++-- aplpack-1.3.2/aplpack/inst/src/eckring1.pnm |only aplpack-1.3.2/aplpack/inst/src/faces.rev | 26 ++-- aplpack-1.3.2/aplpack/inst/src/ms.rev | 40 +++++-- aplpack-1.3.2/aplpack/inst/src/pw-esch.jpg |only aplpack-1.3.2/aplpack/inst/src/pw-esch.png |only aplpack-1.3.2/aplpack/inst/src/pw-esch.ppm |only aplpack-1.3.2/aplpack/inst/src/spin3Ra.rev |only aplpack-1.3.2/aplpack/inst/src/tm1.jpg |only aplpack-1.3.2/aplpack/inst/src/walkman-r.jpg |only aplpack-1.3.2/aplpack/man/faces.Rd | 8 - aplpack-1.3.2/aplpack/man/iconplot.Rd |only aplpack-1.3.2/aplpack/man/puticon.Rd |only aplpack-1.3.2/aplpack/man/skyline.hist.Rd | 11 +- aplpack-1.3.2/aplpack/man/slider.Rd | 10 - aplpack-1.3.2/aplpack/man/spin3R.Rd | 4 aplpack-1.3.2/aplpack/vignettes/sliderfns.Snw | 2 37 files changed, 258 insertions(+), 166 deletions(-)
Title: Credit Risk Scorecard
Description: Makes the development of credit risk scorecard easily and efficiently by providing functions such as information value, variable filter, optimal woe binning, scorecard scaling and performance evaluation etc. The references including:
1. Refaat, M. (2011, ISBN: 9781447511199). Credit Risk Scorecard: Development and Implementation Using SAS.
2. Siddiqi, N. (2006, ISBN: 9780471754510). Credit risk scorecards. Developing and Implementing Intelligent Credit Scoring.
Author: Shichen Xie
Maintainer: Shichen Xie <xie@shichen.name>
Diff between scorecard versions 0.1.7 dated 2018-04-27 and 0.1.8 dated 2018-06-12
DESCRIPTION | 6 +++--- LICENSE | 2 +- MD5 | 36 ++++++++++++++++++------------------ NEWS.md | 9 +++++++++ R/condition_fun.R | 22 ++++++++++++++++++++-- R/info_ent_indx_gini.R | 17 ++++++++--------- R/info_value.R | 2 +- R/perf.R | 28 +++++++++++++++++----------- R/scorecard.R | 2 +- R/splitdf.R | 2 +- R/var_filter.R | 14 ++++++++++++-- R/woebin.R | 30 ++++++++++++++++++++++++------ README.md | 4 +--- build/vignette.rds |binary inst/doc/demo.Rmd | 4 +--- inst/doc/demo.html | 10 ++++------ man/perf_eva.Rd | 2 +- man/perf_psi.Rd | 4 ++-- vignettes/demo.Rmd | 4 +--- 19 files changed, 125 insertions(+), 73 deletions(-)
Title: R Bindings for Gtk 2.8.0 and Above
Description: Facilities in the R language for programming
graphical interfaces using Gtk, the Gimp Tool Kit.
Author: Michael Lawrence <michafla@gene.com> and Duncan Temple Lang <duncan@wald.ucdavis.edu>
Maintainer: Michael Lawrence <michafla@gene.com>
Diff between RGtk2 versions 2.20.34 dated 2018-01-25 and 2.20.35 dated 2018-06-12
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- cleanup | 2 +- inst/doc/overview2.pdf |binary src/Rgtk.c | 5 ++++- 5 files changed, 12 insertions(+), 9 deletions(-)
Title: Data Menu for Radiant: Business Analytics using R and Shiny
Description: The Radiant Data menu includes interfaces for loading, saving,
viewing, visualizing, summarizing, transforming, and combining data. It also
contains functionality to generate reproducible reports of the analyses
conducted in the application.
Author: Vincent Nijs [aut, cre]
Maintainer: Vincent Nijs <radiant@rady.ucsd.edu>
Diff between radiant.data versions 0.8.1 dated 2017-04-25 and 0.9.5 dated 2018-06-12
radiant.data-0.8.1/radiant.data/R/zzz.R |only radiant.data-0.8.1/radiant.data/inst/app/tools/app/code.R |only radiant.data-0.8.1/radiant.data/inst/app/tools/app/report.R |only radiant.data-0.8.1/radiant.data/inst/app/tools/help/code.md |only radiant.data-0.8.1/radiant.data/inst/app/tools/help/figures/80x15.png |only radiant.data-0.8.1/radiant.data/inst/app/tools/help/figures/join_publishers_superheroes.png |only radiant.data-0.8.1/radiant.data/inst/app/tools/help/figures/join_superheroes_publishers.png |only radiant.data-0.8.1/radiant.data/inst/app/tools/help/report.md |only radiant.data-0.8.1/radiant.data/inst/app/www/imgs/80x15.png |only radiant.data-0.8.1/radiant.data/man/Search.Rd |only radiant.data-0.8.1/radiant.data/man/as_data_frame.Rd |only radiant.data-0.8.1/radiant.data/man/changedata.Rd |only radiant.data-0.8.1/radiant.data/man/combinedata.Rd |only radiant.data-0.8.1/radiant.data/man/data_frame.Rd |only radiant.data-0.8.1/radiant.data/man/factorizer.Rd |only 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radiant.data-0.8.1/radiant.data/man/p10.Rd |only radiant.data-0.8.1/radiant.data/man/p25.Rd |only radiant.data-0.8.1/radiant.data/man/p75.Rd |only radiant.data-0.8.1/radiant.data/man/p90.Rd |only radiant.data-0.8.1/radiant.data/man/p95.Rd |only radiant.data-0.8.1/radiant.data/man/plot.character.Rd |only radiant.data-0.8.1/radiant.data/man/render.character.Rd |only radiant.data-0.8.1/radiant.data/man/rounddf.Rd |only radiant.data-0.8.1/radiant.data/man/saver.Rd |only radiant.data-0.8.1/radiant.data/man/sd_rm.Rd |only radiant.data-0.8.1/radiant.data/man/store.character.Rd |only radiant.data-0.8.1/radiant.data/man/store.data.frame.Rd |only radiant.data-0.8.1/radiant.data/man/sum_rm.Rd |only radiant.data-0.8.1/radiant.data/man/var_rm.Rd |only radiant.data-0.8.1/radiant.data/man/viewdata.Rd |only radiant.data-0.8.1/radiant.data/tests/testthat/test_examples.R |only radiant.data-0.9.5/radiant.data/COPYING | 7 radiant.data-0.9.5/radiant.data/DESCRIPTION | 31 radiant.data-0.9.5/radiant.data/LICENSE | 27 radiant.data-0.9.5/radiant.data/MD5 | 327 +- radiant.data-0.9.5/radiant.data/NAMESPACE | 86 radiant.data-0.9.5/radiant.data/NEWS.md | 286 + radiant.data-0.9.5/radiant.data/R/aaa.R | 79 radiant.data-0.9.5/radiant.data/R/combine.R | 101 radiant.data-0.9.5/radiant.data/R/deprecated.R | 136 radiant.data-0.9.5/radiant.data/R/explore.R | 596 +-- radiant.data-0.9.5/radiant.data/R/manage.R |only radiant.data-0.9.5/radiant.data/R/pivotr.R | 488 +-- radiant.data-0.9.5/radiant.data/R/radiant.R | 1417 ++++++--- radiant.data-0.9.5/radiant.data/R/transform.R | 373 +- radiant.data-0.9.5/radiant.data/R/view.R | 286 + radiant.data-0.9.5/radiant.data/R/visualize.R | 471 ++- radiant.data-0.9.5/radiant.data/README.md | 70 radiant.data-0.9.5/radiant.data/data/avengers.rda |binary radiant.data-0.9.5/radiant.data/data/titanic.rda |binary radiant.data-0.9.5/radiant.data/inst/app/global.R | 495 ++- radiant.data-0.9.5/radiant.data/inst/app/init.R | 258 + radiant.data-0.9.5/radiant.data/inst/app/radiant.R | 678 ++-- radiant.data-0.9.5/radiant.data/inst/app/server.R | 15 radiant.data-0.9.5/radiant.data/inst/app/tools/app/about.md | 70 radiant.data-0.9.5/radiant.data/inst/app/tools/app/help.R | 103 radiant.data-0.9.5/radiant.data/inst/app/tools/app/report_funs.R |only radiant.data-0.9.5/radiant.data/inst/app/tools/app/report_r.R |only radiant.data-0.9.5/radiant.data/inst/app/tools/app/report_rmd.R |only radiant.data-0.9.5/radiant.data/inst/app/tools/app/state.R | 129 radiant.data-0.9.5/radiant.data/inst/app/tools/app/stop.R | 58 radiant.data-0.9.5/radiant.data/inst/app/tools/app/tutorials.md | 30 radiant.data-0.9.5/radiant.data/inst/app/tools/data/combine_ui.R | 193 - radiant.data-0.9.5/radiant.data/inst/app/tools/data/data_ui.R | 90 radiant.data-0.9.5/radiant.data/inst/app/tools/data/explore_ui.R | 267 + radiant.data-0.9.5/radiant.data/inst/app/tools/data/manage.R | 226 - radiant.data-0.9.5/radiant.data/inst/app/tools/data/manage_ui.R | 956 ++++-- radiant.data-0.9.5/radiant.data/inst/app/tools/data/pivotr_ui.R | 505 ++- radiant.data-0.9.5/radiant.data/inst/app/tools/data/transform_ui.R | 1497 +++++----- radiant.data-0.9.5/radiant.data/inst/app/tools/data/view.R | 253 + radiant.data-0.9.5/radiant.data/inst/app/tools/data/visualize_ui.R | 411 +- radiant.data-0.9.5/radiant.data/inst/app/tools/help/combine.Rmd | 54 radiant.data-0.9.5/radiant.data/inst/app/tools/help/combine.md | 68 radiant.data-0.9.5/radiant.data/inst/app/tools/help/explore.md | 14 radiant.data-0.9.5/radiant.data/inst/app/tools/help/figures/combine_avengers_superheroes.png |binary radiant.data-0.9.5/radiant.data/inst/app/tools/help/figures/combine_publishers_superheroes.png |only radiant.data-0.9.5/radiant.data/inst/app/tools/help/figures/combine_superheroes_publishers.png |only radiant.data-0.9.5/radiant.data/inst/app/tools/help/figures/expand_grid.png |binary radiant.data-0.9.5/radiant.data/inst/app/tools/help/figures/explore.png |binary radiant.data-0.9.5/radiant.data/inst/app/tools/help/figures/pivotr.png |binary radiant.data-0.9.5/radiant.data/inst/app/tools/help/manage.html |only radiant.data-0.9.5/radiant.data/inst/app/tools/help/manage.md | 22 radiant.data-0.9.5/radiant.data/inst/app/tools/help/pivotr.md | 18 radiant.data-0.9.5/radiant.data/inst/app/tools/help/report_r.md |only radiant.data-0.9.5/radiant.data/inst/app/tools/help/report_rmd.md |only radiant.data-0.9.5/radiant.data/inst/app/tools/help/state.md | 10 radiant.data-0.9.5/radiant.data/inst/app/tools/help/transform.Rmd | 22 radiant.data-0.9.5/radiant.data/inst/app/tools/help/transform.md | 22 radiant.data-0.9.5/radiant.data/inst/app/tools/help/view.Rmd | 24 radiant.data-0.9.5/radiant.data/inst/app/tools/help/view.md | 23 radiant.data-0.9.5/radiant.data/inst/app/tools/help/visualize.md | 44 radiant.data-0.9.5/radiant.data/inst/app/ui.R | 13 radiant.data-0.9.5/radiant.data/inst/app/www/imgs/by-nc-sa.png |only 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radiant.data-0.9.5/radiant.data/man/copy_attr.Rd | 4 radiant.data-0.9.5/radiant.data/man/copy_from.Rd | 4 radiant.data-0.9.5/radiant.data/man/describe.Rd | 11 radiant.data-0.9.5/radiant.data/man/diamonds.Rd | 2 radiant.data-0.9.5/radiant.data/man/dtab.Rd | 9 radiant.data-0.9.5/radiant.data/man/dtab.data.frame.Rd |only radiant.data-0.9.5/radiant.data/man/dtab.explore.Rd | 24 radiant.data-0.9.5/radiant.data/man/dtab.pivotr.Rd | 28 radiant.data-0.9.5/radiant.data/man/empty_level.Rd | 4 radiant.data-0.9.5/radiant.data/man/explore.Rd | 36 radiant.data-0.9.5/radiant.data/man/filter_data.Rd |only radiant.data-0.9.5/radiant.data/man/find_dropbox.Rd | 9 radiant.data-0.9.5/radiant.data/man/find_gdrive.Rd |only radiant.data-0.9.5/radiant.data/man/find_project.Rd |only radiant.data-0.9.5/radiant.data/man/fix_names.Rd |only radiant.data-0.9.5/radiant.data/man/fix_smart.Rd |only radiant.data-0.9.5/radiant.data/man/flip.Rd | 10 radiant.data-0.9.5/radiant.data/man/format_df.Rd |only 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radiant.data-0.9.5/radiant.data/man/level_list.Rd | 4 radiant.data-0.9.5/radiant.data/man/load_clip.Rd |only radiant.data-0.9.5/radiant.data/man/mutate_ext.Rd | 14 radiant.data-0.9.5/radiant.data/man/n_missing.Rd | 6 radiant.data-0.9.5/radiant.data/man/n_obs.Rd |only radiant.data-0.9.5/radiant.data/man/parse_path.Rd |only radiant.data-0.9.5/radiant.data/man/percentiles.Rd |only radiant.data-0.9.5/radiant.data/man/pivotr.Rd | 33 radiant.data-0.9.5/radiant.data/man/plot.pivotr.Rd | 15 radiant.data-0.9.5/radiant.data/man/print.gtable.Rd | 2 radiant.data-0.9.5/radiant.data/man/radiant.data-deprecated.Rd | 52 radiant.data-0.9.5/radiant.data/man/radiant.data.Rd | 9 radiant.data-0.9.5/radiant.data/man/radiant.data_viewer.Rd |only radiant.data-0.9.5/radiant.data/man/radiant.data_window.Rd |only radiant.data-0.9.5/radiant.data/man/read_files.Rd |only radiant.data-0.9.5/radiant.data/man/refactor.Rd | 6 radiant.data-0.9.5/radiant.data/man/register.Rd | 21 radiant.data-0.9.5/radiant.data/man/render.Rd | 4 radiant.data-0.9.5/radiant.data/man/render.datatables.Rd | 6 radiant.data-0.9.5/radiant.data/man/render.plotly.Rd |only radiant.data-0.9.5/radiant.data/man/round_df.Rd |only radiant.data-0.9.5/radiant.data/man/rownames_to_column.Rd | 3 radiant.data-0.9.5/radiant.data/man/save_clip.Rd |only radiant.data-0.9.5/radiant.data/man/search_data.Rd |only radiant.data-0.9.5/radiant.data/man/show_duplicated.Rd | 4 radiant.data-0.9.5/radiant.data/man/sig_stars.Rd | 7 radiant.data-0.9.5/radiant.data/man/skew.re.Rd | 7 radiant.data-0.9.5/radiant.data/man/sshh.Rd | 2 radiant.data-0.9.5/radiant.data/man/sshhr.Rd | 2 radiant.data-0.9.5/radiant.data/man/standardize.Rd | 2 radiant.data-0.9.5/radiant.data/man/store.Rd | 6 radiant.data-0.9.5/radiant.data/man/store.explore.Rd | 10 radiant.data-0.9.5/radiant.data/man/store.pivotr.Rd | 10 radiant.data-0.9.5/radiant.data/man/subplot.Rd |only radiant.data-0.9.5/radiant.data/man/summary.explore.Rd | 9 radiant.data-0.9.5/radiant.data/man/summary.pivotr.Rd | 10 radiant.data-0.9.5/radiant.data/man/table2data.Rd | 6 radiant.data-0.9.5/radiant.data/man/tibble.Rd | 7 radiant.data-0.9.5/radiant.data/man/tidy.Rd | 3 radiant.data-0.9.5/radiant.data/man/to_fct.Rd |only radiant.data-0.9.5/radiant.data/man/view_data.Rd |only radiant.data-0.9.5/radiant.data/man/visualize.Rd | 49 radiant.data-0.9.5/radiant.data/man/wday.Rd | 2 radiant.data-0.9.5/radiant.data/man/which.pmax.Rd | 12 radiant.data-0.9.5/radiant.data/man/which.pmin.Rd | 12 radiant.data-0.9.5/radiant.data/man/xtile.Rd | 8 radiant.data-0.9.5/radiant.data/tests/testthat.R | 2 radiant.data-0.9.5/radiant.data/tests/testthat/test_funs.R | 160 - 212 files changed, 7832 insertions(+), 4451 deletions(-)
Title: Composite Gaussian Process Models
Description: Fit composite Gaussian process (CGP) models as described in Ba and Joseph (2012) "Composite Gaussian Process Models for Emulating Expensive Functions", Annals of Applied Statistics. The CGP model is capable of approximating complex surfaces that are not second-order stationary. Important functions in this package are CGP, print.CGP, summary.CGP, predict.CGP and plotCGP.
Author: Shan Ba and V. Roshan Joseph
Maintainer: Shan Ba <shanbatr@gmail.com>
Diff between CGP versions 2.0-2 dated 2014-09-21 and 2.1-1 dated 2018-06-12
CGP-2.0-2/CGP/R/CGP.default.R |only CGP-2.0-2/CGP/R/CGPEst.R |only CGP-2.0-2/CGP/man/CGP.default.Rd |only CGP-2.0-2/CGP/man/CGPEst.Rd |only CGP-2.1-1/CGP/DESCRIPTION | 10 - CGP-2.1-1/CGP/MD5 | 22 +--- CGP-2.1-1/CGP/NAMESPACE | 4 CGP-2.1-1/CGP/R/CGP.R | 210 ++++++++++++++++++++++++++++++++++++++- CGP-2.1-1/CGP/man/CGP-package.Rd | 4 CGP-2.1-1/CGP/man/CGP.Rd | 40 +++++-- CGP-2.1-1/CGP/man/plotCGP.Rd | 8 - CGP-2.1-1/CGP/man/predict.CGP.Rd | 4 CGP-2.1-1/CGP/man/print.CGP.Rd | 8 - CGP-2.1-1/CGP/man/summary.CGP.Rd | 8 - 14 files changed, 272 insertions(+), 46 deletions(-)
More information about spectralAnalysis at CRAN
Permanent link
Title: Random Orthonormal Matrix Generation and Optimization on the
Stiefel Manifold
Description: Simulation of random orthonormal matrices from linear and quadratic exponential family distributions on the Stiefel manifold. The most general type of distribution covered is the matrix-variate Bingham-von Mises-Fisher distribution. Most of the simulation methods are presented in Hoff(2009) "Simulation of the Matrix Bingham-von Mises-Fisher Distribution, With Applications to Multivariate and Relational Data" <doi:10.1198/jcgs.2009.07177>. The package also includes functions for optimization on the Stiefel manifold based on algorithms described in Wen and Yin (2013) "A feasible method for optimization with orthogonality constraints" <doi:10.1007/s10107-012-0584-1>.
Author: Peter Hoff and Alexander Franks
Maintainer: Peter Hoff <peter.hoff@duke.edu>
Diff between rstiefel versions 0.10 dated 2014-11-25 and 0.20 dated 2018-06-12
DESCRIPTION | 19 ++++++---- MD5 | 83 ++++++++++++++++++++++++---------------------- NAMESPACE | 25 ++++++++++++- NEWS.md |only R/NullC.R | 27 ++++++++++++++ R/opt.stiefel.R |only R/rW.R | 23 ++++++++++++ R/rbing.O2.R | 50 +++++++++++++++++++++++++++ R/rbing.Op.R | 59 ++++++++++++++++++++++++++++++++ R/rbing.matrix.gibbs.R | 45 ++++++++++++++++++++++++ R/rbing.vector.gibbs.R | 34 ++++++++++++++++++ R/rbmf.O2.R | 45 ++++++++++++++++++++++++ R/rbmf.matrix.gibbs.R | 43 +++++++++++++++++++++++ R/rbmf.vector.gibbs.R | 28 +++++++++++++++ R/rmf.matrix.R | 59 ++++++++++++++++++++++++++++++++ R/rmf.matrix.gibbs.R | 42 +++++++++++++++++++++++ R/rmf.vector.R | 38 +++++++++++++++++++++ R/rstiefel-package.R |only R/rustiefel.R | 22 ++++++++++++ R/ry_bing.R | 23 ++++++++++++ R/ry_bmf.R | 25 +++++++++++++ build/vignette.rds |binary inst/doc/rstiefel.Rnw | 64 +++++++++++++++++++++++++++++++++-- inst/doc/rstiefel.pdf |binary man/NullC.Rd | 32 +++++++++-------- man/lineSearch.Rd |only man/lineSearchBB.Rd |only man/optStiefel.Rd |only man/rW.Rd | 30 ++++++++-------- man/rbing.O2.Rd | 44 ++++++++++++------------ man/rbing.Op.Rd | 40 ++++++++++++---------- man/rbing.matrix.gibbs.Rd | 43 ++++++++++++----------- man/rbing.vector.gibbs.Rd | 40 +++++++++++----------- man/rbmf.O2.Rd | 49 +++++++++++++-------------- man/rbmf.matrix.gibbs.Rd | 46 ++++++++++++------------- man/rbmf.vector.gibbs.Rd | 42 +++++++++++------------ man/rmf.matrix.Rd | 29 ++++++++-------- man/rmf.matrix.gibbs.Rd | 46 +++++++++++-------------- man/rmf.vector.Rd | 32 ++++++++--------- man/rstiefel-package.Rd | 44 +++++++++++------------- man/rustiefel.Rd | 38 +++++++++------------ man/ry_bing.Rd | 38 ++++++++++----------- man/ry_bmf.Rd | 40 +++++++++++----------- man/tr.Rd |only src/rstiefel.c | 24 +++++++++---- vignettes/rstiefel.Rnw | 2 - 46 files changed, 1036 insertions(+), 377 deletions(-)
Title: Measurement and Partitioning of Similarity-Sensitive
Biodiversity
Description: Provides a framework for the measurement and partitioning of
the (similarity-sensitive) biodiversity of a metacommunity and its
constituent subcommunities. Richard Reeve, et al. (2015)
<arXiv:1404.6520v3>.
Author: Sonia Mitchell [aut, cre],
Richard Reeve [aut]
Maintainer: Sonia Mitchell <s.mitchell.2@research.gla.ac.uk>
Diff between rdiversity versions 1.0 dated 2017-06-27 and 1.2 dated 2018-06-12
DESCRIPTION | 14 ++--- MD5 | 50 +++++++++--------- NAMESPACE | 1 NEWS.md | 16 +++++ R/chainsaw.R | 99 +++++++++++++++++------------------- R/check_phypartition.R |only R/class-metacommunity.R | 34 ++++++------ R/metacommunity.R | 71 ++++++++++++++----------- R/metadiv.R | 18 ++++-- R/phy_abundance.R | 7 -- R/phy_struct.R | 15 ++--- R/plot_diversity.R | 20 +++++-- R/repartition.R | 15 ++++- R/subdiv.R | 15 +++-- R/zmatrix.R | 45 ++++++++-------- README.md | 7 +- man/chainsaw.Rd | 29 ++++------ man/check_phypartition.Rd |only man/metacommunity-class.Rd | 48 ++++++++--------- man/metacommunity-methods.Rd | 78 ++++++++++++++++++---------- man/metadiv.Rd | 18 +++--- man/phy_abundance.Rd | 1 man/plot_diversity.Rd | 8 ++ man/repartition.Rd | 15 ++++- man/subdiv.Rd | 15 +++-- tests/testthat/test-chainsaw.R | 60 ++++++++++++++++----- tests/testthat/test-phy_abundance.R |only tests/testthat/test-phy_struct.R |only 28 files changed, 405 insertions(+), 294 deletions(-)
Title: Fits Psychometric Functions for Multiple Groups
Description: Quickly fits and plots psychometric functions (normal, logistic,
Weibull or any or any function defined by the user) for multiple groups.
Author: Linares Daniel [aut, cre],
L<U+00F3>pez-Moliner Joan [aut]
Maintainer: Linares Daniel <danilinares@gmail.com>
Diff between quickpsy versions 0.1.4 dated 2016-10-26 and 0.1.5 dated 2018-06-12
quickpsy-0.1.4/quickpsy/README.md |only quickpsy-0.1.5/quickpsy/DESCRIPTION | 12 - quickpsy-0.1.5/quickpsy/MD5 | 138 ++++++++-------- quickpsy-0.1.5/quickpsy/R/one_parameters.R | 2 quickpsy-0.1.5/quickpsy/R/plotcurves_.R | 4 quickpsy-0.1.5/quickpsy/R/quickpsy.R | 4 quickpsy-0.1.5/quickpsy/R/quickpsy_.R | 2 quickpsy-0.1.5/quickpsy/inst/CITATION | 19 +- quickpsy-0.1.5/quickpsy/man/aic.Rd | 1 quickpsy-0.1.5/quickpsy/man/avbootstrap.Rd | 1 quickpsy-0.1.5/quickpsy/man/create_full_nll.Rd | 1 quickpsy-0.1.5/quickpsy/man/create_nll.Rd | 1 quickpsy-0.1.5/quickpsy/man/create_nllsaturated.Rd | 1 quickpsy-0.1.5/quickpsy/man/create_psy_fun.Rd | 1 quickpsy-0.1.5/quickpsy/man/cum_normal_fun.Rd | 1 quickpsy-0.1.5/quickpsy/man/curvesbootstrap.Rd | 1 quickpsy-0.1.5/quickpsy/man/deviance.Rd | 1 quickpsy-0.1.5/quickpsy/man/devianceboot.Rd | 1 quickpsy-0.1.5/quickpsy/man/deviancep.Rd | 1 quickpsy-0.1.5/quickpsy/man/fitpsy.Rd | 1 quickpsy-0.1.5/quickpsy/man/get_functions.Rd | 1 quickpsy-0.1.5/quickpsy/man/inv_cum_normal_fun.Rd | 1 quickpsy-0.1.5/quickpsy/man/inv_logistic_fun.Rd | 1 quickpsy-0.1.5/quickpsy/man/inv_weibull_fun.Rd | 1 quickpsy-0.1.5/quickpsy/man/limits.Rd | 1 quickpsy-0.1.5/quickpsy/man/logistic_fun.Rd | 1 quickpsy-0.1.5/quickpsy/man/logliks.Rd | 1 quickpsy-0.1.5/quickpsy/man/logliksboot.Rd | 1 quickpsy-0.1.5/quickpsy/man/logliksbootsaturated.Rd | 1 quickpsy-0.1.5/quickpsy/man/loglikssaturated.Rd | 1 quickpsy-0.1.5/quickpsy/man/one_aic.Rd | 1 quickpsy-0.1.5/quickpsy/man/one_curve.Rd | 1 quickpsy-0.1.5/quickpsy/man/one_deviance.Rd | 1 quickpsy-0.1.5/quickpsy/man/one_deviancep.Rd | 1 quickpsy-0.1.5/quickpsy/man/one_limit.Rd | 1 quickpsy-0.1.5/quickpsy/man/one_loglik.Rd | 1 quickpsy-0.1.5/quickpsy/man/one_logliksaturated.Rd | 1 quickpsy-0.1.5/quickpsy/man/one_parameters.Rd | 1 quickpsy-0.1.5/quickpsy/man/one_parci.Rd | 1 quickpsy-0.1.5/quickpsy/man/one_parcomparisons.Rd | 1 quickpsy-0.1.5/quickpsy/man/one_sse.Rd | 1 quickpsy-0.1.5/quickpsy/man/one_threshold.Rd | 1 quickpsy-0.1.5/quickpsy/man/one_thresholdcomparisons.Rd | 1 quickpsy-0.1.5/quickpsy/man/one_thresholdsci.Rd | 1 quickpsy-0.1.5/quickpsy/man/one_ypred.Rd | 1 quickpsy-0.1.5/quickpsy/man/parameters.Rd | 1 quickpsy-0.1.5/quickpsy/man/parbootstrap.Rd | 1 quickpsy-0.1.5/quickpsy/man/parci.Rd | 1 quickpsy-0.1.5/quickpsy/man/parcomparisons.Rd | 1 quickpsy-0.1.5/quickpsy/man/parini.Rd | 1 quickpsy-0.1.5/quickpsy/man/parn.Rd | 1 quickpsy-0.1.5/quickpsy/man/plotcurves.Rd | 1 quickpsy-0.1.5/quickpsy/man/plotcurves_.Rd | 1 quickpsy-0.1.5/quickpsy/man/plotpar.Rd | 1 quickpsy-0.1.5/quickpsy/man/plotpar_.Rd | 1 quickpsy-0.1.5/quickpsy/man/plotthresholds.Rd | 1 quickpsy-0.1.5/quickpsy/man/plotthresholds_.Rd | 1 quickpsy-0.1.5/quickpsy/man/qpdat.Rd | 1 quickpsy-0.1.5/quickpsy/man/quickpsy.Rd | 5 quickpsy-0.1.5/quickpsy/man/quickpsy_.Rd | 3 quickpsy-0.1.5/quickpsy/man/quickreadfiles.Rd | 1 quickpsy-0.1.5/quickpsy/man/sse.Rd | 1 quickpsy-0.1.5/quickpsy/man/summary.quickpsy.Rd | 1 quickpsy-0.1.5/quickpsy/man/thresholdcomparisons.Rd | 1 quickpsy-0.1.5/quickpsy/man/thresholds.Rd | 1 quickpsy-0.1.5/quickpsy/man/thresholdsbootstrap.Rd | 1 quickpsy-0.1.5/quickpsy/man/thresholdsci.Rd | 1 quickpsy-0.1.5/quickpsy/man/weibull_fun.Rd | 1 quickpsy-0.1.5/quickpsy/man/ypred.Rd | 1 quickpsy-0.1.5/quickpsy/tools |only 70 files changed, 98 insertions(+), 150 deletions(-)
Title: MNREAD Parameters Estimation and Curve Plotting
Description: Allows to analyze the reading data obtained with the MNREAD Acuity
Chart, a continuous-text reading acuity chart for normal and low vision.
Provides the necessary functions to plot the MNREAD curve and estimate
automatically the four MNREAD parameters: Maximum Reading Speed,
Critical Print Size, Reading Acuity and Reading Accessibility Index.
Parameters can be estimated either with the standard method
or with a nonlinear mixed-effects (NLME) modeling.
See Calabrese et al. 2018 for more details <doi.org/10.1167/18.1.8>.
Author: Aurélie Calabrèse [aut, cre],
J. Steve Mansfield [aut],
Gordon E. Legge [aut]
Maintainer: Aurélie Calabrèse <acalabre@umn.edu>
Diff between mnreadR versions 1.2.0 dated 2017-10-10 and 2.0.0 dated 2018-06-12
DESCRIPTION | 14 +++--- MD5 | 34 +++++++++------- NAMESPACE | 10 ++++ R/all_mnread_param.R | 14 +++--- R/curve_param.R | 19 +++++---- R/data_low_vision.R | 7 ++- R/mnreadR.R | 24 +++++++---- R/mnread_curve.R | 95 +++++++++++++++++++++++------------------------ R/nlme_curve.R |only R/nlme_param.R |only R/zzz.R | 3 - data/data_low_vision.rda |binary man/curveParam_RS.Rd | 8 ++- man/curveParam_RT.Rd | 11 +++-- man/data_low_vision.Rd | 7 ++- man/mnreadCurve.Rd | 6 +- man/mnreadParam.Rd | 14 +++--- man/mnreadR.Rd | 20 ++++++--- man/nlmeCurve.Rd |only man/nlmeParam.Rd |only 20 files changed, 170 insertions(+), 116 deletions(-)
Title: Interface to the Google Cloud Machine Learning Platform
Description: Interface to the Google Cloud Machine Learning Platform
<https://cloud.google.com/ml-engine>, which provides cloud tools for training machine
learning models.
Author: Javier Luraschi [aut, cre],
JJ Allaire [aut],
Kevin Ushey [aut],
RStudio [cph]
Maintainer: Javier Luraschi <javier@rstudio.com>
Diff between cloudml versions 0.5.0 dated 2018-06-06 and 0.5.1 dated 2018-06-12
DESCRIPTION | 8 ++++---- MD5 | 21 +++++++++++---------- NEWS.md |only R/gcloud-exec.R | 27 +++++++++++++++++---------- R/jobs.R | 28 ++++++++++++++++++++++------ R/scope.R | 16 +++++++++++----- inst/cloudml/cloudml/deploy.R | 3 +++ inst/examples/keras/tuning.yml | 2 +- inst/examples/mnist/tuning.yml | 2 +- inst/examples/tfestimators/tuning.yml | 2 +- man/cloudml_train.Rd | 5 ++++- man/gcloud_exec.Rd | 4 +++- 12 files changed, 78 insertions(+), 40 deletions(-)
Title: Pseudo-Ranks
Description: Efficient calculation of pseudo-ranks. In case of equal sample sizes, pseudo-ranks and mid-ranks are equal. When used for inference mid-ranks may lead to paradoxical results. Pseudo-ranks are in general not affected by such a problem. For details, see Brunner, E., Bathke A. C. and Konietschke, F: Rank- and Pseudo-Rank Procedures in Factorial Designs - Using R and SAS, Springer Verlag, to appear.
Author: Martin Happ [aut, cre] (<https://orcid.org/0000-0003-0009-2665>),
Georg Zimmermann [aut],
Arne C. Bathke [aut],
Edgar Brunner [aut]
Maintainer: Martin Happ <martin.happ@aon.at>
Diff between pseudorank versions 0.1.0 dated 2018-06-10 and 0.2.0 dated 2018-06-12
pseudorank-0.1.0/pseudorank/man/pseudorank-package.Rd |only pseudorank-0.2.0/pseudorank/DESCRIPTION | 11 ++- pseudorank-0.2.0/pseudorank/MD5 | 18 +++-- pseudorank-0.2.0/pseudorank/NAMESPACE | 7 ++ pseudorank-0.2.0/pseudorank/R/S3method.R | 41 +++++++++++ pseudorank-0.2.0/pseudorank/R/hettmansperger.R |only pseudorank-0.2.0/pseudorank/R/pseudoranks.R | 63 +++++++++++++++++- pseudorank-0.2.0/pseudorank/README.md |only pseudorank-0.2.0/pseudorank/man/pseudorank.Rd |only pseudorank-0.2.0/pseudorank/src/RcppExports.cpp | 8 +- pseudorank-0.2.0/pseudorank/src/pseudorank.cpp | 46 ++++++++----- pseudorank-0.2.0/pseudorank/tests |only 12 files changed, 161 insertions(+), 33 deletions(-)
Title: Manipulation of Microsoft Word and PowerPoint Documents
Description: Access and manipulate 'Microsoft Word' and 'Microsoft PowerPoint' documents from R.
The package focuses on tabular and graphical reporting from R; it also provides two functions
that let users get document content into data objects. A set of functions
lets add and remove images, tables and paragraphs of text in new or existing documents.
When working with 'PowerPoint' presentations, slides can be added or removed; shapes inside
slides can also be added or removed. When working with 'Word' documents, a cursor can be
used to help insert or delete content at a specific location in the document. The package
does not require any installation of Microsoft products to be able to write Microsoft files.
Author: David Gohel [aut, cre],
Frank Hangler [ctb] (function body_replace_all_text),
Liz Sander [ctb] (several documentation fixes),
Jon Calder [ctb] (update vignettes),
John Harrold [ctb] (fuction annotate_base)
Maintainer: David Gohel <david.gohel@ardata.fr>
Diff between officer versions 0.3.0 dated 2018-05-03 and 0.3.1 dated 2018-06-12
DESCRIPTION | 8 +++---- MD5 | 28 +++++++++++++-------------- NAMESPACE | 1 NEWS | 8 +++++++ R/docx_add.R | 5 +--- R/fortify_pptx.R | 4 ++- R/pack_folder.R | 42 +++++++++++++++++++++++------------------ R/relationship.R | 27 ++++++++++++++++++-------- README.md | 8 +++++++ build/vignette.rds |binary inst/doc/powerpoint.html | 22 ++++++++++----------- inst/doc/word.html | 22 ++++++++++----------- man/pack_folder.Rd | 3 -- tests/testthat/test-docx-add.R | 7 +++++- tests/testthat/test-zip.R | 6 +++++ 15 files changed, 116 insertions(+), 75 deletions(-)
Title: Permutation Testing Network Module Preservation Across Datasets
Description: Functions for assessing the replication/preservation of a network
module's topology across datasets through permutation testing.
Author: Scott Ritchie [aut, cre]
Maintainer: Scott Ritchie <sritchie73@gmail.com>
Diff between NetRep versions 1.0.4 dated 2016-11-16 and 1.2.1 dated 2018-06-12
NetRep-1.0.4/NetRep/vignettes/NetRep_files/figure-html/correlation_heatmap-1.png |only NetRep-1.0.4/NetRep/vignettes/NetRep_files/figure-html/disk_matrix_dry_run-1.png |only NetRep-1.0.4/NetRep/vignettes/NetRep_files/figure-html/disk_matrix_plot-1.png |only NetRep-1.0.4/NetRep/vignettes/NetRep_files/figure-html/dry_run-1.png |only NetRep-1.0.4/NetRep/vignettes/NetRep_files/figure-html/dry_run_customised-1.png |only NetRep-1.0.4/NetRep/vignettes/NetRep_files/figure-html/mean_degree-1.png |only NetRep-1.0.4/NetRep/vignettes/NetRep_files/figure-html/mean_degree_customised-1.png |only NetRep-1.0.4/NetRep/vignettes/NetRep_files/figure-html/modules_in_discovery-1.png |only NetRep-1.0.4/NetRep/vignettes/NetRep_files/figure-html/modules_in_test-1.png |only NetRep-1.0.4/NetRep/vignettes/NetRep_files/img/mod1.png |only NetRep-1.0.4/NetRep/vignettes/NetRep_files/img/preservation.png |only NetRep-1.2.1/NetRep/ChangeLog | 165 ++++ NetRep-1.2.1/NetRep/DESCRIPTION | 12 NetRep-1.2.1/NetRep/MD5 | 104 +- NetRep-1.2.1/NetRep/NAMESPACE | 1 NetRep-1.2.1/NetRep/R/RcppExports.R | 16 NetRep-1.2.1/NetRep/R/check-user-input.R | 76 + NetRep-1.2.1/NetRep/R/modulePreservation.R | 90 +- NetRep-1.2.1/NetRep/R/multi-machine.R | 2 NetRep-1.2.1/NetRep/R/networkProperties.R | 73 + NetRep-1.2.1/NetRep/R/orderNodes.R | 84 +- NetRep-1.2.1/NetRep/R/orderSamples.R | 52 - NetRep-1.2.1/NetRep/R/plot-functions.R | 128 ++- NetRep-1.2.1/NetRep/R/plot-module.R | 98 +- NetRep-1.2.1/NetRep/R/plot-topology.R | 208 +++-- NetRep-1.2.1/NetRep/R/plot-utils.R | 32 NetRep-1.2.1/NetRep/R/roxygen-defs.R | 3 NetRep-1.2.1/NetRep/README.md | 16 NetRep-1.2.1/NetRep/build/vignette.rds |binary NetRep-1.2.1/NetRep/inst/doc/NetRep.R | 18 NetRep-1.2.1/NetRep/inst/doc/NetRep.Rmd | 22 NetRep-1.2.1/NetRep/inst/doc/NetRep.html | 403 +++++----- NetRep-1.2.1/NetRep/man/NetRep.Rd | 1 NetRep-1.2.1/NetRep/man/bigMatrix.Rd | 1 NetRep-1.2.1/NetRep/man/combineAnalyses.Rd | 1 NetRep-1.2.1/NetRep/man/common_params.Rd | 4 NetRep-1.2.1/NetRep/man/disk.matrix.Rd | 11 NetRep-1.2.1/NetRep/man/example-data.Rd | 12 NetRep-1.2.1/NetRep/man/modulePreservation.Rd | 8 NetRep-1.2.1/NetRep/man/networkProperties.Rd | 4 NetRep-1.2.1/NetRep/man/nodeOrder.Rd | 4 NetRep-1.2.1/NetRep/man/orderModules_param.Rd | 1 NetRep-1.2.1/NetRep/man/permutationTest.Rd | 3 NetRep-1.2.1/NetRep/man/plotModule.Rd | 11 NetRep-1.2.1/NetRep/man/plotTopology.Rd | 19 NetRep-1.2.1/NetRep/man/plot_params.Rd | 1 NetRep-1.2.1/NetRep/man/requiredPerms.Rd | 1 NetRep-1.2.1/NetRep/man/sampleOrder.Rd | 4 NetRep-1.2.1/NetRep/man/simplify_param.Rd | 1 NetRep-1.2.1/NetRep/src/RcppExports.cpp | 33 NetRep-1.2.1/NetRep/src/permutations.cpp | 78 + NetRep-1.2.1/NetRep/src/permutationsNoData.cpp | 72 + NetRep-1.2.1/NetRep/vignettes/NetRep.Rmd | 22 NetRep-1.2.1/NetRep/vignettes/NetRep_files/figure-html/correlation_heatmap-1.jpeg |only NetRep-1.2.1/NetRep/vignettes/NetRep_files/figure-html/disk_matrix_dry_run-1.jpeg |only NetRep-1.2.1/NetRep/vignettes/NetRep_files/figure-html/disk_matrix_plot-1.jpeg |only NetRep-1.2.1/NetRep/vignettes/NetRep_files/figure-html/dry_run-1.jpeg |only NetRep-1.2.1/NetRep/vignettes/NetRep_files/figure-html/dry_run_customised-1.jpeg |only NetRep-1.2.1/NetRep/vignettes/NetRep_files/figure-html/mean_degree-1.jpeg |only NetRep-1.2.1/NetRep/vignettes/NetRep_files/figure-html/mean_degree_customised-1.jpeg |only NetRep-1.2.1/NetRep/vignettes/NetRep_files/figure-html/modules_in_discovery-1.jpeg |only NetRep-1.2.1/NetRep/vignettes/NetRep_files/figure-html/modules_in_test-1.jpeg |only NetRep-1.2.1/NetRep/vignettes/NetRep_files/img/mod1.jpg |only NetRep-1.2.1/NetRep/vignettes/NetRep_files/img/preservation.jpg |only 64 files changed, 1163 insertions(+), 732 deletions(-)
Title: Multivariate Ordinal Regression Models
Description: A flexible framework for fitting multivariate
ordinal regression models with composite likelihood methods.
Author: Rainer Hirk [aut, cre],
Kurt Hornik [aut],
Laura Vana [aut],
Alan Genz [ctb] (Fortran Code)
Maintainer: Rainer Hirk <rhirk@wu.ac.at>
Diff between mvord versions 0.3.0 dated 2018-05-06 and 0.3.1 dated 2018-06-12
DESCRIPTION | 11 MD5 | 59 - NEWS | 6 R/MMO.R | 323 ++++----- R/error_struct.R | 35 - R/mvord.R | 6 R/mvord_fit.R | 86 +- R/predict.R | 769 +++++++++++----------- R/utilities.R | 147 ++-- build/vignette.rds |binary inst/doc/vignette_mvord.R | 108 +-- inst/doc/vignette_mvord.Rnw | 1185 +++++++++++++++++++++-------------- inst/doc/vignette_mvord.pdf |binary inst/doc/vignette_mvord2.R |only inst/doc/vignette_mvord2.Rmd |only inst/doc/vignette_mvord2.html |only man/joint_probabilities.Rd | 9 man/marginal_predict.Rd | 13 man/mvord.Rd | 1 man/predict.mvord.Rd | 21 tests/check_methods.R | 32 tests/check_toy_example.R | 19 vignettes/jp.rda |only vignettes/mvord.bib | 17 vignettes/res1.rda |binary vignettes/res2.rda |binary vignettes/res_AR1_probit.rda |binary vignettes/res_cor_logit.rda |binary vignettes/res_cor_probit_2raters.rda |only vignettes/res_cor_probit_3raters.rda |only vignettes/res_cor_probit_simple.rda |binary vignettes/res_essay.rda |binary vignettes/vignette_mvord.Rnw | 1185 +++++++++++++++++++++-------------- vignettes/vignette_mvord2.Rmd |only 34 files changed, 2384 insertions(+), 1648 deletions(-)
Title: Fitting Markov Switching Models
Description: Estimation, inference and diagnostics for Univariate Autoregressive Markov Switching Models for Linear and Generalized Models. Distributions for the series include gaussian, Poisson, binomial and gamma cases. The EM algorithm is used for estimation.
Author: Josep A. Sanchez-Espigares, Alberto Lopez-Moreno
Maintainer: Josep A. Sanchez-Espigares <josep.a.sanchez@upc.edu>
Diff between MSwM versions 1.2 dated 2014-02-24 and 1.3 dated 2018-06-12
DESCRIPTION | 10 +++++----- MD5 | 10 +++++----- NAMESPACE | 12 ++++++++++++ R/2MSM.r | 6 +++--- build/vignette.rds |binary inst/doc/examples.pdf |binary 6 files changed, 25 insertions(+), 13 deletions(-)
Title: Local Polynomial (Ridge) Regression
Description: Local Polynomial Regression with Ridging.
Author: Burkhardt Seifert <seifert@ifspm.unizh.ch> (S original);
Packaged for R by Martin Maechler
Maintainer: Martin Maechler <maechler@stat.math.ethz.ch>
Diff between lpridge versions 1.0-7 dated 2013-04-17 and 1.0-8 dated 2018-06-12
lpridge-1.0-7/lpridge/COPYRIGHTS |only lpridge-1.0-7/lpridge/README |only lpridge-1.0-7/lpridge/README.lpepa |only lpridge-1.0-7/lpridge/README.lpridge |only lpridge-1.0-8/lpridge/DESCRIPTION | 11 - lpridge-1.0-8/lpridge/MD5 | 25 +- lpridge-1.0-8/lpridge/NAMESPACE | 3 lpridge-1.0-8/lpridge/R/lpepa.R | 3 lpridge-1.0-8/lpridge/README.md |only lpridge-1.0-8/lpridge/TODO | 1 lpridge-1.0-8/lpridge/inst |only lpridge-1.0-8/lpridge/src/init.c |only lpridge-1.0-8/lpridge/src/lpaux.f | 317 +++++++++++++++++---------------- lpridge-1.0-8/lpridge/src/lpepa.f | 56 +++-- lpridge-1.0-8/lpridge/src/lpridge.f | 240 ++++++++++++++---------- lpridge-1.0-8/lpridge/src/lpridge.h |only lpridge-1.0-8/lpridge/tests/cars-ex.R | 3 lpridge-1.0-8/lpridge/tests/deriv-ex.R |only 18 files changed, 364 insertions(+), 295 deletions(-)
Title: Dependencies for the 'jamovi' Framework
Description: A framework for creating rich interactive analyses for the jamovi
platform (see <https://www.jamovi.org> for more information).
Author: Jonathon Love
Maintainer: Jonathon Love <jon@thon.cc>
Diff between jmvcore versions 0.8.5 dated 2018-03-20 and 0.9.1 dated 2018-06-12
DESCRIPTION | 10 +- MD5 | 10 +- R/analysis.R | 60 ++++++---------- R/html.R | 2 R/options.R | 216 +++++++++++++++++++++++++++++++++++++++++++++-------------- R/utils.R | 8 +- 6 files changed, 207 insertions(+), 99 deletions(-)
Title: Heteroscedastic t-Regression
Description: Functions for the fitting and summarizing of heteroscedastic t-regression.
Author: Julian Taylor <julian.taylor@adelaide.edu.au>
Maintainer: Julian Taylor <julian.taylor@adelaide.edu.au>
Diff between hett versions 0.3-1 dated 2012-01-04 and 0.3-2 dated 2018-06-12
DESCRIPTION | 11 ++-- MD5 | 10 ++-- NAMESPACE | 34 +++++++++++---- R/hett.R | 131 ++++++++++++++++++++++++++-------------------------------- data/mm.rda |binary data/rent.rda |binary 6 files changed, 95 insertions(+), 91 deletions(-)
Title: 'stats' for Seasonal Adjustment on the Fly with 'ggplot2'
Description: Provides 'ggplot2' 'stats' that estimate seasonally adjusted series
and rolling summaries such as rolling average on the fly for time series.
Author: Peter Ellis [aut, cre],
Christophe Sax [ctb]
Maintainer: Peter Ellis <peter.ellis2013nz@gmail.com>
Diff between ggseas versions 0.5.1 dated 2016-10-11 and 0.5.4 dated 2018-06-12
ggseas-0.5.1/ggseas/vignettes/ggsdc.Rmd |only ggseas-0.5.4/ggseas/DESCRIPTION | 11 +++---- ggseas-0.5.4/ggseas/MD5 | 39 +++++++++++++------------ ggseas-0.5.4/ggseas/NAMESPACE | 9 ++++- ggseas-0.5.4/ggseas/R/ggsdc.R | 5 ++- ggseas-0.5.4/ggseas/R/x13-seasonal.R | 6 +-- ggseas-0.5.4/ggseas/build/vignette.rds |binary ggseas-0.5.4/ggseas/inst/doc/ggsdc.html | 19 +++--------- ggseas-0.5.4/ggseas/inst/doc/ggseas.R |only ggseas-0.5.4/ggseas/inst/doc/ggseas.Rmd |only ggseas-0.5.4/ggseas/inst/doc/ggseas.html |only ggseas-0.5.4/ggseas/man/ggsdc.Rd | 1 ggseas-0.5.4/ggseas/man/ggseas-package.Rd | 15 +++++++++ ggseas-0.5.4/ggseas/man/ldeaths_df.Rd | 1 ggseas-0.5.4/ggseas/man/nzbop.Rd | 1 ggseas-0.5.4/ggseas/man/stat_decomp.Rd | 33 ++++++++++----------- ggseas-0.5.4/ggseas/man/stat_index.Rd | 33 ++++++++++----------- ggseas-0.5.4/ggseas/man/stat_rollapplyr.Rd | 33 ++++++++++----------- ggseas-0.5.4/ggseas/man/stat_seas.Rd | 35 +++++++++++----------- ggseas-0.5.4/ggseas/man/stat_stl.Rd | 33 ++++++++++----------- ggseas-0.5.4/ggseas/man/tsdf.Rd | 1 ggseas-0.5.4/ggseas/tests/testthat/test-tsdf.R | 2 - ggseas-0.5.4/ggseas/vignettes/ggseas.Rmd |only 23 files changed, 149 insertions(+), 128 deletions(-)
Title: Generation of IRT Response Patterns under Computerized Adaptive
Testing
Description: Provides routines for the generation of response patterns under unidimensional dichotomous and polytomous computerized adaptive testing (CAT) framework. It holds many standard functions to estimate ability, select the first item(s) to administer and optimally select the next item, as well as several stopping rules. Options to control for item exposure and content balancing are also available (Magis and Barrada (2017) <doi:10.18637/jss.v076.c01>).
Author: David Magis (U Liege, Belgium), Gilles Raiche (UQAM, Canada), Juan Ramon Barrada (U Zaragoza, Spain)
Maintainer: David Magis <david.magis@uliege.be>
Diff between catR versions 3.14 dated 2018-05-29 and 3.15 dated 2018-06-12
DESCRIPTION | 8 +++---- MD5 | 28 +++++++++++++------------- NAMESPACE | 1 NEWS | 28 +++++++++++++++++++++----- R/randomCAT.R | 48 ++++++++++++++++++++++++++------------------- build/partial.rdb |binary man/eapSem.Rd | 2 - man/integrate.catR.Rd | 6 +++++ man/nextItem.Rd | 2 - man/randomCAT.Rd | 30 +++++++++++++++++++--------- man/semTheta.Rd | 4 +-- man/simulateRespondents.Rd | 13 ++++++++++++ man/startItems.Rd | 10 ++++----- man/testList.Rd | 1 man/thetaEst.Rd | 2 - 15 files changed, 121 insertions(+), 62 deletions(-)
Title: Embeddable Cairo Graphics Device Driver
Description: This device uses Cairo and GTK to draw to the screen,
file (png, svg, pdf, and ps) or memory (arbitrary GdkDrawable
or Cairo context). The screen device may be embedded into RGtk2
interfaces and supports all interactive features of other graphics
devices, including getGraphicsEvent().
Author: Michael Lawrence
Maintainer: Michael Lawrence <michafla@gene.com>
Diff between cairoDevice versions 2.24 dated 2017-01-06 and 2.25 dated 2018-06-12
DESCRIPTION | 6 +-- MD5 | 7 ++-- cleanup | 2 - src/R_init_cairoDevice.c |only src/gtk.c | 72 +++++++++++++++++++++++++++++++++++++++++++++++ 5 files changed, 80 insertions(+), 7 deletions(-)
Title: Nested and Crossed Block Designs for Factorial, Fractional
Factorial and Unstructured Treatment Sets
Description: Constructs D-optimal or near D-optimal nested and crossed
block designs for unstructured or general factorial treatment designs.
Where a structured treatment design is required, a D-optimal or near
D-optimal treatment design is found based on a suitable model
matrix design formula. The required block design is then found for the
required treatment design based on a defined set of block factors.
The block factors are added in sequence and each added block factor
is optimized conditional on all previously added block factors.
The block design can have repeated nesting down to any required
depth of nesting with either a simple set of nested blocks or a
crossed blocks design at each level of nesting. If a crossed
blocks design has more than a single plot in each crossed blocks
intersection, the determinant of a weighted combination of the
information matrix for additive crossed blocks effects and the
information matrix for multiplicative crossed blocks effects
is used as the design criterion. Outputs include a table
showing the allocation of treatments to blocks and tables showing
the achieved D-efficiency factors for each block and treatment design.
Author: R. N. Edmondson.
Maintainer: Rodney Edmondson <rodney.edmondson@gmail.com>
Diff between blocksdesign versions 2.8 dated 2018-04-18 and 2.9 dated 2018-06-12
DESCRIPTION | 45 +- MD5 | 26 - NAMESPACE | 3 R/blocks.r | 5 R/blocksdesign-package.r | 62 +-- R/data.R |only R/design.r | 437 +++++++++++------------ R/efficiencies.R |only build |only data |only inst/doc/blocksdesign.R | 117 ++++++ inst/doc/blocksdesign.Rmd |only inst/doc/blocksdesign.html | 820 ++++++++++++++++++++------------------------ man/blockEfficiencies.Rd |only man/blocksdesign-package.Rd | 55 +- man/design.Rd | 124 +++--- man/durban.Rd |only vignettes |only 18 files changed, 893 insertions(+), 801 deletions(-)
Title: Antares Visualizations
Description: Visualize results generated by Antares, a powerful software
developed by RTE to simulate and study electric power systems
(more information about Antares here: <https://antares.rte-france.com>).
This package provides functions that create interactive charts to help
Antares users visually explore the results of their simulations. You can see the results of several ANTARES studies here : <http://bpnumerique.rte-france.com/>.
Author: Jalal-Edine ZAWAM [aut, cre],
Francois Guillem [aut],
Benoit Thieurmel [aut],
Titouan Robert [aut],
Baptiste SEGUINOT [ctb],
RTE [cph]
Maintainer: Jalal-Edine ZAWAM <jalal-edine.zawam@rte-france.com>
Diff between antaresViz versions 0.13.0 dated 2018-05-22 and 0.14.0 dated 2018-06-12
DESCRIPTION | 8 MD5 | 10 NEWS | 5 inst/application/src/server/05_modules.R | 477 ++++++++++++++-------------- inst/application/src/server/06_module_map.R | 332 +++++++++---------- inst/doc/antaresViz.html | 4 6 files changed, 423 insertions(+), 413 deletions(-)
Title: Piecewise Structural Equation Modeling
Description: Implements piecewise structural equation modeling from a single
list of structural equations, with new methods for non-linear, latent, and
composite variables, standardized coefficients, query-based prediction and
indirect effects.
Author: Jon Lefcheck, Jarrett Byrnes, Jim Grace
Maintainer: Jon Lefcheck <jlefcheck@bigelow.org>
Diff between piecewiseSEM versions 1.2.1 dated 2016-12-08 and 2.0.0 dated 2018-06-12
piecewiseSEM-1.2.1/piecewiseSEM/R/endogenous.reverse.R |only piecewiseSEM-1.2.1/piecewiseSEM/R/filter.exogenous.R |only piecewiseSEM-1.2.1/piecewiseSEM/R/get.basis.set.R |only piecewiseSEM-1.2.1/piecewiseSEM/R/get.dag.R |only piecewiseSEM-1.2.1/piecewiseSEM/R/get.formula.list.R |only piecewiseSEM-1.2.1/piecewiseSEM/R/get.model.control.R |only piecewiseSEM-1.2.1/piecewiseSEM/R/get.random.formula.R |only piecewiseSEM-1.2.1/piecewiseSEM/R/get.scaled.data.R |only piecewiseSEM-1.2.1/piecewiseSEM/R/get.scaled.model.R |only piecewiseSEM-1.2.1/piecewiseSEM/R/get.sort.dag.R |only piecewiseSEM-1.2.1/piecewiseSEM/R/partial.resid.R |only piecewiseSEM-1.2.1/piecewiseSEM/R/sem.aic.R |only piecewiseSEM-1.2.1/piecewiseSEM/R/sem.basis.set.R |only piecewiseSEM-1.2.1/piecewiseSEM/R/sem.coefs.R |only piecewiseSEM-1.2.1/piecewiseSEM/R/sem.fisher.c.R |only piecewiseSEM-1.2.1/piecewiseSEM/R/sem.fit.R |only piecewiseSEM-1.2.1/piecewiseSEM/R/sem.lavaan.R |only piecewiseSEM-1.2.1/piecewiseSEM/R/sem.missing.paths.R |only piecewiseSEM-1.2.1/piecewiseSEM/R/sem.model.fits.R |only piecewiseSEM-1.2.1/piecewiseSEM/R/sem.plot.R |only piecewiseSEM-1.2.1/piecewiseSEM/R/sem.predict.R |only piecewiseSEM-1.2.1/piecewiseSEM/data/shipley2009.rda |only piecewiseSEM-1.2.1/piecewiseSEM/data/shipley2013.rda |only piecewiseSEM-1.2.1/piecewiseSEM/man/sem.lavaan.Rd |only piecewiseSEM-1.2.1/piecewiseSEM/man/sem.plot.Rd |only piecewiseSEM-1.2.1/piecewiseSEM/man/sem.predict.Rd |only piecewiseSEM-1.2.1/piecewiseSEM/man/shipley2009.Rd |only piecewiseSEM-1.2.1/piecewiseSEM/man/shipley2013.Rd |only piecewiseSEM-2.0.0/piecewiseSEM/DESCRIPTION | 24 piecewiseSEM-2.0.0/piecewiseSEM/MD5 | 176 +- piecewiseSEM-2.0.0/piecewiseSEM/NAMESPACE | 104 + piecewiseSEM-2.0.0/piecewiseSEM/NEWS.md | 216 -- piecewiseSEM-2.0.0/piecewiseSEM/R/Dag.R |only piecewiseSEM-2.0.0/piecewiseSEM/R/anova.R |only piecewiseSEM-2.0.0/piecewiseSEM/R/basisSet.R |only piecewiseSEM-2.0.0/piecewiseSEM/R/cerror.R |only piecewiseSEM-2.0.0/piecewiseSEM/R/coefs.R |only piecewiseSEM-2.0.0/piecewiseSEM/R/dSep.R |only piecewiseSEM-2.0.0/piecewiseSEM/R/data.R |only piecewiseSEM-2.0.0/piecewiseSEM/R/fisherC.R |only piecewiseSEM-2.0.0/piecewiseSEM/R/helpers.R |only piecewiseSEM-2.0.0/piecewiseSEM/R/infCrit.R |only piecewiseSEM-2.0.0/piecewiseSEM/R/oldFunctions.R |only piecewiseSEM-2.0.0/piecewiseSEM/R/partialResid.R |only piecewiseSEM-2.0.0/piecewiseSEM/R/piecewiseSEM-package.R |only piecewiseSEM-2.0.0/piecewiseSEM/R/psem.R |only piecewiseSEM-2.0.0/piecewiseSEM/R/residuals.R |only piecewiseSEM-2.0.0/piecewiseSEM/R/rsquared.R | 626 +++++++ piecewiseSEM-2.0.0/piecewiseSEM/R/summary.R |only piecewiseSEM-2.0.0/piecewiseSEM/R/zzz.R |only piecewiseSEM-2.0.0/piecewiseSEM/README.md | 253 -- piecewiseSEM-2.0.0/piecewiseSEM/build/vignette.rds |binary piecewiseSEM-2.0.0/piecewiseSEM/data/keeley.rda |only piecewiseSEM-2.0.0/piecewiseSEM/data/shipley.rda |only piecewiseSEM-2.0.0/piecewiseSEM/inst/CITATION | 2 piecewiseSEM-2.0.0/piecewiseSEM/inst/doc/piecewiseSEM.R | 302 ++- piecewiseSEM-2.0.0/piecewiseSEM/inst/doc/piecewiseSEM.Rmd | 602 +++++- piecewiseSEM-2.0.0/piecewiseSEM/inst/doc/piecewiseSEM.html | 872 ++++++++-- piecewiseSEM-2.0.0/piecewiseSEM/man/AIC.psem.Rd |only piecewiseSEM-2.0.0/piecewiseSEM/man/BIC.psem.Rd |only piecewiseSEM-2.0.0/piecewiseSEM/man/Dag.Rd |only piecewiseSEM-2.0.0/piecewiseSEM/man/GetData.Rd |only piecewiseSEM-2.0.0/piecewiseSEM/man/GetOLRE.Rd |only piecewiseSEM-2.0.0/piecewiseSEM/man/GetVarCov.Rd |only piecewiseSEM-2.0.0/piecewiseSEM/man/KRp.Rd |only piecewiseSEM-2.0.0/piecewiseSEM/man/all.vars.merMod.Rd |only piecewiseSEM-2.0.0/piecewiseSEM/man/all.vars_notrans.Rd |only piecewiseSEM-2.0.0/piecewiseSEM/man/all.vars_trans.Rd |only piecewiseSEM-2.0.0/piecewiseSEM/man/anova.psem.Rd |only piecewiseSEM-2.0.0/piecewiseSEM/man/as.psem.Rd |only piecewiseSEM-2.0.0/piecewiseSEM/man/basisSet.Rd |only piecewiseSEM-2.0.0/piecewiseSEM/man/captureTable.Rd |only piecewiseSEM-2.0.0/piecewiseSEM/man/cerror.Rd |only piecewiseSEM-2.0.0/piecewiseSEM/man/coefs.Rd |only piecewiseSEM-2.0.0/piecewiseSEM/man/cyclic.Rd |only piecewiseSEM-2.0.0/piecewiseSEM/man/dSep.Rd |only piecewiseSEM-2.0.0/piecewiseSEM/man/dataTrans.Rd |only piecewiseSEM-2.0.0/piecewiseSEM/man/dupOutput.Rd |only piecewiseSEM-2.0.0/piecewiseSEM/man/endogenous.reverse.Rd | 63 piecewiseSEM-2.0.0/piecewiseSEM/man/evaluateClasses.Rd |only piecewiseSEM-2.0.0/piecewiseSEM/man/filter.exogenous.Rd | 57 piecewiseSEM-2.0.0/piecewiseSEM/man/filterExisting.Rd |only piecewiseSEM-2.0.0/piecewiseSEM/man/filterExogenous.Rd |only piecewiseSEM-2.0.0/piecewiseSEM/man/filterInteractions.Rd |only piecewiseSEM-2.0.0/piecewiseSEM/man/findbars.lme.Rd |only piecewiseSEM-2.0.0/piecewiseSEM/man/fisherC.Rd |only piecewiseSEM-2.0.0/piecewiseSEM/man/formatpsem.Rd |only piecewiseSEM-2.0.0/piecewiseSEM/man/get.basis.set.Rd | 29 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piecewiseSEM-2.0.0/piecewiseSEM/man/partialCorr.Rd |only piecewiseSEM-2.0.0/piecewiseSEM/man/partialResid.Rd |only piecewiseSEM-2.0.0/piecewiseSEM/man/piecewiseSEM-package.Rd | 141 - piecewiseSEM-2.0.0/piecewiseSEM/man/print.attr.Rd |only piecewiseSEM-2.0.0/piecewiseSEM/man/print.psem.Rd |only piecewiseSEM-2.0.0/piecewiseSEM/man/print.summary.psem.Rd |only piecewiseSEM-2.0.0/piecewiseSEM/man/psem.Rd |only piecewiseSEM-2.0.0/piecewiseSEM/man/removeCerror.Rd |only piecewiseSEM-2.0.0/piecewiseSEM/man/removeData.Rd |only piecewiseSEM-2.0.0/piecewiseSEM/man/resid.lme.Rd |only piecewiseSEM-2.0.0/piecewiseSEM/man/residuals.psem.Rd |only piecewiseSEM-2.0.0/piecewiseSEM/man/reverseAddVars.Rd |only piecewiseSEM-2.0.0/piecewiseSEM/man/reverseNonLin.Rd |only piecewiseSEM-2.0.0/piecewiseSEM/man/rsquared.Rd | 174 - piecewiseSEM-2.0.0/piecewiseSEM/man/rsquared.glm.Rd |only piecewiseSEM-2.0.0/piecewiseSEM/man/rsquared.glmerMod.Rd |only piecewiseSEM-2.0.0/piecewiseSEM/man/rsquared.glmmPQL.Rd |only piecewiseSEM-2.0.0/piecewiseSEM/man/rsquared.gls.Rd |only piecewiseSEM-2.0.0/piecewiseSEM/man/rsquared.lm.Rd |only piecewiseSEM-2.0.0/piecewiseSEM/man/rsquared.lme.Rd |only piecewiseSEM-2.0.0/piecewiseSEM/man/rsquared.merMod.Rd |only piecewiseSEM-2.0.0/piecewiseSEM/man/rsquared.negbin.Rd |only piecewiseSEM-2.0.0/piecewiseSEM/man/scaleFam.Rd |only piecewiseSEM-2.0.0/piecewiseSEM/man/scaleGLM.Rd |only piecewiseSEM-2.0.0/piecewiseSEM/man/scaleInt.Rd |only piecewiseSEM-2.0.0/piecewiseSEM/man/sem.aic.Rd | 147 - piecewiseSEM-2.0.0/piecewiseSEM/man/sem.basis.set.Rd | 99 - piecewiseSEM-2.0.0/piecewiseSEM/man/sem.coefs.Rd | 108 - piecewiseSEM-2.0.0/piecewiseSEM/man/sem.fisher.c.Rd | 140 - piecewiseSEM-2.0.0/piecewiseSEM/man/sem.fit.Rd | 277 --- piecewiseSEM-2.0.0/piecewiseSEM/man/sem.missing.paths.Rd | 160 - piecewiseSEM-2.0.0/piecewiseSEM/man/sem.model.fits.Rd | 114 - piecewiseSEM-2.0.0/piecewiseSEM/man/shipley.Rd |only piecewiseSEM-2.0.0/piecewiseSEM/man/sortDag.Rd |only piecewiseSEM-2.0.0/piecewiseSEM/man/specifyDir.Rd |only piecewiseSEM-2.0.0/piecewiseSEM/man/stdCoefs.Rd |only piecewiseSEM-2.0.0/piecewiseSEM/man/stripTransformations.Rd |only piecewiseSEM-2.0.0/piecewiseSEM/man/summary.psem.Rd |only piecewiseSEM-2.0.0/piecewiseSEM/man/unstdCoefs.Rd |only piecewiseSEM-2.0.0/piecewiseSEM/man/update.psem.Rd |only piecewiseSEM-2.0.0/piecewiseSEM/vignettes/piecewiseSEM.Rmd | 602 +++++- 146 files changed, 3154 insertions(+), 2541 deletions(-)
Title: Generalized Linear Mixed Models using Adaptive Gaussian
Quadrature
Description: Fits generalized linear mixed models for a single grouping factor under
maximum likelihood approximating the integrals over the random effects with an
adaptive Gaussian quadrature rule; Jose C. Pinheiro and Douglas M. Bates (1995)
<doi:10.1080/10618600.1995.10474663>.
Author: Dimitris Rizopoulos <d.rizopoulos@erasmusmc.nl>
Maintainer: Dimitris Rizopoulos <d.rizopoulos@erasmusmc.nl>
Diff between GLMMadaptive versions 0.1-3 dated 2018-06-10 and 0.1-6 dated 2018-06-12
DESCRIPTION | 11 ++++++----- MD5 | 35 ++++++++++++++++++++++++----------- R/Fit_Funs.R | 4 ++-- R/Functions.R | 3 ++- R/methods.R | 13 +++++++++---- R/mixed_fit.R | 15 +++++++-------- R/mixed_model.R | 21 +++++++++++++++++++-- README.md | 16 +++++++++++++++- build |only inst |only man/GLMMadaptive.Rd | 4 ++-- man/methods.Rd | 4 +++- man/mixed_model.Rd | 12 +++++++++--- man/negative_binomial.Rd | 13 +++++++++---- vignettes |only 15 files changed, 107 insertions(+), 44 deletions(-)
More information about freetypeharfbuzz at CRAN
Permanent link
Title: Bayesian Multi-Plate High-Throughput Screening of Compounds
Description: Can be used for joint identification of candidate compound hits from multiple assays, in drug discovery. This package implements the framework of I. D. Shterev, D. B. Dunson, C. Chan and G. D. Sempowski. "Bayesian Multi-Plate High-Throughput Screening of Compounds", Scientific Reports (to appear). This project was funded by the Division of Allergy, Immunology, and Transplantation, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Department of Health and Human Services, under contract No. HHSN272201400054C entitled "Adjuvant Discovery For Vaccines Against West Nile Virus and Influenza", awarded to Duke University and lead by Drs. Herman Staats and Soman Abraham.
Author: Ivo D. Shterev [aut, cre],
David B. Dunson [aut],
Cliburn Chan [aut],
Gregory D. Sempowski [aut]
Maintainer: Ivo D. Shterev <i.shterev@duke.edu>
Diff between BHTSpack versions 0.1 dated 2018-06-10 and 0.2 dated 2018-06-12
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- build/partial.rdb |binary inst/doc/BHTSpackManual.Rnw | 4 ++-- inst/doc/BHTSpackManual.pdf |binary man/BHTSpack-package.Rd | 2 +- src/BHTSpack.cpp | 6 +++--- vignettes/BHTSpackManual.Rnw | 4 ++-- 8 files changed, 18 insertions(+), 18 deletions(-)
Title: Reliable Comparison of Floating Point Numbers
Description: Comparisons of floating point numbers are problematic due to errors
associated with the binary representation of decimal numbers.
Despite being aware of these problems, people still use numerical methods
that fail to account for these and other rounding errors (this pitfall is
the first to be highlighted in Circle 1 of Burns (2012)
'The R Inferno' <http://www.burns-stat.com/pages/Tutor/R_inferno.pdf>).
This package provides new relational operators useful for performing
floating point number comparisons with a set tolerance.
Author: Alex M Chubaty [aut, cre],
Her Majesty the Queen in Right of Canada, as represented by the
Minister of Natural Resources Canada [cph]
Maintainer: Alex M Chubaty <alex.chubaty@gmail.com>
Diff between fpCompare versions 0.2.1 dated 2015-09-01 and 0.2.2 dated 2018-06-12
fpCompare-0.2.1/fpCompare/NEWS |only fpCompare-0.2.2/fpCompare/DESCRIPTION | 17 - fpCompare-0.2.2/fpCompare/MD5 | 30 - fpCompare-0.2.2/fpCompare/NAMESPACE | 16 fpCompare-0.2.2/fpCompare/NEWS.md |only fpCompare-0.2.2/fpCompare/R/fpCompare.R | 148 ++++----- fpCompare-0.2.2/fpCompare/R/zzz.R | 14 fpCompare-0.2.2/fpCompare/README.md | 132 ++++---- fpCompare-0.2.2/fpCompare/build/vignette.rds |binary fpCompare-0.2.2/fpCompare/inst/doc/fpCompare.Rmd | 164 +++++----- fpCompare-0.2.2/fpCompare/inst/doc/fpCompare.pdf |binary fpCompare-0.2.2/fpCompare/inst/examples/examples.R | 34 +- fpCompare-0.2.2/fpCompare/man/relational-operators.Rd | 161 ++++----- fpCompare-0.2.2/fpCompare/tests/test-all.R | 4 fpCompare-0.2.2/fpCompare/tests/testthat/test-numerical-comparisons.R | 66 ++-- fpCompare-0.2.2/fpCompare/vignettes/bibliography.bib | 34 +- fpCompare-0.2.2/fpCompare/vignettes/fpCompare.Rmd | 164 +++++----- 17 files changed, 490 insertions(+), 494 deletions(-)
Title: Equi-Rank Hierarchical Clustering Validation
Description: Assesses the statistical significance of clusters for a given dataset through bootstrapping and hypothesis testing of a given matrix of empirical Spearman's rho, based on the technique of S. Gaiser et al. (2010) <doi:10.1016/j.jmva.2010.07.008>.
Author: Simon-Pierre Gadoury <spgadou@me.com>
Maintainer: Simon-Pierre Gadoury <spgadou@me.com>
Diff between erhcv versions 0.1.1 dated 2018-06-10 and 0.1.2 dated 2018-06-12
DESCRIPTION | 6 +- MD5 | 32 +++++++------- R/ClusterNodeSelection.R | 96 +++++++++++++++++++++++++------------------- R/EliminateCluster.R | 11 +++-- R/GetLeaves.R | 10 +++- R/GetPairs.R | 26 +++++++++-- R/VerifyTree.R | 31 +++++++++----- R/hclust2tree.R | 27 +++++------- R/tree2plot.R | 21 ++++++--- build/partial.rdb |binary man/ClusterNodeSelection.Rd | 7 ++- man/EliminateCluster.Rd | 4 - man/GetLeaves.Rd | 7 +-- man/GetPairs.Rd | 7 ++- man/VerifyTree.Rd | 9 ++-- man/hclust2tree.Rd | 5 +- man/tree2plot.Rd | 8 ++- 17 files changed, 187 insertions(+), 120 deletions(-)
More information about CaseBasedReasoning at CRAN
Permanent link
Title: Bayesian Non- And Semi-Parametric Model Fitting
Description: Markov chain Monte Carlo algorithms for non- and semi-parametric models: 1. Dirichlet process mixtures & 2. spike-slab for variable selection in mean/variance regression models.
Author: Georgios Papageorgiou
Maintainer: Georgios Papageorgiou <gpapageo@gmail.com>
Diff between BNSP versions 2.0.5 dated 2018-05-25 and 2.0.6 dated 2018-06-12
DESCRIPTION | 8 - MD5 | 10 - R/mvrm.R | 274 +++++++++++++++++++++++++++++++--------------------- man/BNSP-package.Rd | 4 src/OneResLtnt.c | 25 ++-- src/SpecOneRL.h | 3 6 files changed, 197 insertions(+), 127 deletions(-)
Title: Community Dynamics Metrics
Description: Univariate and multivariate temporal and spatial diversity indices,
rank abundance curves, and community stability metrics. The functions
implement metrics that are either explicitly temporal and include the
option to calculate them over multiple replicates, or spatial and include
the option to calculate them over multiple time points. Functions fall into
five categories: static diversity indices, temporal diversity indices,
spatial diversity indices, rank abundance curves, and community stability
metrics. The diversity indices are temporal and spatial analogs to
traditional diversity indices. Specifically, the package includes functions
to calculate community richness, evenness and diversity at a given point in
space and time. In addition, it contains functions to calculate species
turnover, mean rank shifts, and lags in community similarity between two
time points.
Author: Lauren Hallett [aut],
Meghan L. Avolio [aut],
Ian T. Carroll [aut],
Sydney K. Jones [aut],
A. Andrew M. MacDonald [aut],
Dan F. B. Flynn [aut],
Peter Slaughter [aut],
Julie Ripplinger [aut],
Scott L. Collins [aut],
Corinna Gries [aut],
Matthew B. Jones [aut, cre]
Maintainer: Matthew B. Jones <jones@nceas.ucsb.edu>
Diff between codyn versions 1.1.0 dated 2016-04-27 and 2.0.0 dated 2018-06-12
codyn-1.1.0/codyn/inst/tests |only codyn-1.1.0/codyn/tests/test-all.R |only codyn-2.0.0/codyn/DESCRIPTION | 41 codyn-2.0.0/codyn/MD5 | 163 ++- codyn-2.0.0/codyn/NAMESPACE | 17 codyn-2.0.0/codyn/NEWS | 20 codyn-2.0.0/codyn/R/RAC_change.R |only codyn-2.0.0/codyn/R/RAC_difference.R |only codyn-2.0.0/codyn/R/abundance_change.R |only codyn-2.0.0/codyn/R/abundance_difference.R |only codyn-2.0.0/codyn/R/codyn-package.R | 52 + codyn-2.0.0/codyn/R/community_diversity.R |only codyn-2.0.0/codyn/R/community_structure.R |only codyn-2.0.0/codyn/R/curve_change.R |only codyn-2.0.0/codyn/R/curve_difference.R |only codyn-2.0.0/codyn/R/multivariate_change.R |only codyn-2.0.0/codyn/R/multivariate_difference.R |only codyn-2.0.0/codyn/R/pool_replicates.R |only codyn-2.0.0/codyn/R/rate_change.R | 6 codyn-2.0.0/codyn/R/temporal_torus_translation.R | 6 codyn-2.0.0/codyn/R/turnover.R | 4 codyn-2.0.0/codyn/R/utilities.R | 298 ++++++ codyn-2.0.0/codyn/R/variance_ratio.R | 4 codyn-2.0.0/codyn/README.md | 42 codyn-2.0.0/codyn/build/vignette.rds |binary codyn-2.0.0/codyn/data/pplots.RData |only codyn-2.0.0/codyn/inst/CITATION | 6 codyn-2.0.0/codyn/inst/doc/Community_Stability_Metrics.html | 436 +++++++--- codyn-2.0.0/codyn/inst/doc/Temporal_Diversity_Indices.R | 22 codyn-2.0.0/codyn/inst/doc/Temporal_Diversity_Indices.Rmd | 28 codyn-2.0.0/codyn/inst/doc/Temporal_Diversity_Indices.html | 515 +++++++----- codyn-2.0.0/codyn/inst/doc/codyn_overview.html | 226 ++++- codyn-2.0.0/codyn/man/EQ.Rd |only codyn-2.0.0/codyn/man/Evar.Rd |only codyn-2.0.0/codyn/man/RAC_change.Rd |only codyn-2.0.0/codyn/man/RAC_difference.Rd |only codyn-2.0.0/codyn/man/S.Rd |only codyn-2.0.0/codyn/man/abundance_change.Rd |only codyn-2.0.0/codyn/man/abundance_difference.Rd |only codyn-2.0.0/codyn/man/add_rank_abundance.Rd |only codyn-2.0.0/codyn/man/add_ranks.Rd |only codyn-2.0.0/codyn/man/check_args.Rd |only codyn-2.0.0/codyn/man/check_multispp.Rd | 1 codyn-2.0.0/codyn/man/check_names.Rd | 1 codyn-2.0.0/codyn/man/check_numeric.Rd | 1 codyn-2.0.0/codyn/man/check_single.Rd | 18 codyn-2.0.0/codyn/man/check_single_onerep.Rd | 9 codyn-2.0.0/codyn/man/check_sppvar.Rd | 1 codyn-2.0.0/codyn/man/codyn.Rd | 31 codyn-2.0.0/codyn/man/collins08.Rd | 1 codyn-2.0.0/codyn/man/community_diversity.Rd |only codyn-2.0.0/codyn/man/community_stability.Rd | 1 codyn-2.0.0/codyn/man/community_structure.Rd |only codyn-2.0.0/codyn/man/confint.cyclic_shift.Rd | 1 codyn-2.0.0/codyn/man/curve_change.Rd |only codyn-2.0.0/codyn/man/curve_difference.Rd |only codyn-2.0.0/codyn/man/curve_dissim.Rd |only codyn-2.0.0/codyn/man/cyclic_shift.Rd | 7 codyn-2.0.0/codyn/man/cyclic_shift_onerep.Rd | 1 codyn-2.0.0/codyn/man/df_intersect.Rd | 1 codyn-2.0.0/codyn/man/fill_species.Rd |only codyn-2.0.0/codyn/man/fill_zeros.Rd |only codyn-2.0.0/codyn/man/knz_001d.Rd | 1 codyn-2.0.0/codyn/man/lag_i.Rd | 1 codyn-2.0.0/codyn/man/lagged_distances.Rd | 3 codyn-2.0.0/codyn/man/lagged_slope.Rd | 1 codyn-2.0.0/codyn/man/mean_rank_shift.Rd | 1 codyn-2.0.0/codyn/man/multivariate_change.Rd |only codyn-2.0.0/codyn/man/multivariate_difference.Rd |only codyn-2.0.0/codyn/man/pplots.Rd |only codyn-2.0.0/codyn/man/rank_onerep.Rd | 1 codyn-2.0.0/codyn/man/rank_shift.Rd | 1 codyn-2.0.0/codyn/man/rate_change.Rd | 3 codyn-2.0.0/codyn/man/rate_change_interval.Rd | 3 codyn-2.0.0/codyn/man/shuffle_community.Rd | 1 codyn-2.0.0/codyn/man/split_apply_combine.Rd |only codyn-2.0.0/codyn/man/stability_onerep.Rd | 1 codyn-2.0.0/codyn/man/synch_onerep.Rd | 1 codyn-2.0.0/codyn/man/synchrony.Rd | 1 codyn-2.0.0/codyn/man/transpose_community.Rd | 5 codyn-2.0.0/codyn/man/turnover.Rd | 1 codyn-2.0.0/codyn/man/turnover_allyears.Rd | 3 codyn-2.0.0/codyn/man/turnover_twoyears.Rd | 3 codyn-2.0.0/codyn/man/variance_ratio.Rd | 3 codyn-2.0.0/codyn/man/variance_ratio_longformdata.Rd | 5 codyn-2.0.0/codyn/man/variance_ratio_matrixdata.Rd | 1 codyn-2.0.0/codyn/tests/testthat |only codyn-2.0.0/codyn/tests/testthat.R |only codyn-2.0.0/codyn/vignettes/Temporal_Diversity_Indices.Rmd | 28 89 files changed, 1477 insertions(+), 551 deletions(-)
Title: Fit Projected 2D Profiles to Galaxy Images
Description: Get data / Define model / ??? / Profit! 'ProFit' is a Bayesian galaxy fitting tool that uses a fast 'C++' image generation library and a flexible interface to a large number of likelihood samplers.
Author: Aaron Robotham, Dan Taranu, Rodrigo Tobar
Maintainer: Aaron Robotham <aaron.robotham@uwa.edu.au>
Diff between ProFit versions 1.1.1 dated 2018-03-09 and 1.1.2 dated 2018-06-12
DESCRIPTION | 10 - MD5 | 60 +++++------ NAMESPACE | 2 NEWS | 8 + R/profitCubaBrokenExp.R | 6 - R/profitCubaCoreSersic.R | 2 R/profitCubaFerrer.R | 2 R/profitCubaKing.R | 4 R/profitCubaMoffat.R | 2 R/profitCubaSersic.R | 2 R/profitLikeModel.R | 20 ++- R/profitMakeModel.R | 22 ++-- R/profitMakePlots.R | 4 R/profitMakePointSource.R | 6 - R/profitSetupData.R | 7 - R/profitUtility.R | 16 ++ build/partial.rdb |binary build/vignette.rds |binary inst/doc/ProFit-Galaxy-Fit-Example.html | 27 ++-- inst/doc/ProFit-Isophotal-Ellipses.html | 5 inst/doc/ProFit-Make-Model-Image.html | 18 +-- inst/doc/ProFit-OpenCL-OpenMP.html | 4 inst/doc/ProFit-PSF-Convolution-Can-Be-Convoluted.html | 30 ++--- inst/doc/ProFit-PSF-Fit-Example.html | 4 inst/doc/ProFit-Sigma-Maps.html | 92 ++++++++--------- inst/doc/ProFit-The-Full-Monty.html | 4 man/ProFit-package.Rd | 4 man/profitMakePointSource.Rd | 8 + man/profitOpenCLEnv.Rd | 1 src/libprofit/src/opencl.cpp | 36 ++++-- src/r_profit.cpp | 2 31 files changed, 235 insertions(+), 173 deletions(-)
Title: Utilities for Using Munsell Colours
Description: Provides easy access to, and manipulation of, the Munsell
colours. Provides a mapping between Munsell's
original notation (e.g. "5R 5/10") and hexadecimal strings suitable
for use directly in R graphics. Also provides utilities
to explore slices through the Munsell colour tree, to transform
Munsell colours and display colour palettes.
Author: Charlotte Wickham <cwickham@gmail.com>
Maintainer: Charlotte Wickham <cwickham@gmail.com>
Diff between munsell versions 0.4.3 dated 2016-02-12 and 0.5.0 dated 2018-06-12
DESCRIPTION | 10 +++--- MD5 | 69 +++++++++++++++++++++--------------------- NEWS.md | 10 ++++++ R/alter.r | 7 +++- R/convert.r | 7 ++-- R/plot.r | 3 - README.md | 69 +++++++++++++++++++++++++++++------------- man/check_mnsl.Rd | 1 man/chroma_slice.Rd | 1 man/complement.Rd | 4 -- man/complement_slice.Rd | 1 man/darker.Rd | 1 man/desaturate.Rd | 1 man/figures |only man/fix_mnsl.Rd | 1 man/hue_slice.Rd | 1 man/hvc2mnsl.Rd | 1 man/in_gamut.Rd | 1 man/lighter.Rd | 1 man/mnsl.Rd | 5 +-- man/mnsl2hvc.Rd | 1 man/mnsl_hues.Rd | 1 man/munsell.Rd | 3 - man/pbgyr.Rd | 1 man/plot_closest.Rd | 1 man/plot_hex.Rd | 1 man/plot_mnsl.Rd | 1 man/rgb2mnsl.Rd | 1 man/rygbp.Rd | 1 man/saturate.Rd | 1 man/seq_mnsl.Rd | 1 man/text_colour.Rd | 1 man/theme_munsell.Rd | 1 man/value_slice.Rd | 1 tests/testthat/test-convert.R | 19 +++++++++++ 35 files changed, 133 insertions(+), 96 deletions(-)