Title: Nanosecond-Resolution Time for R
Description: Full 64-bit resolution date and time support with resolution up
to nanosecond granularity is provided, with easy transition to and from the
standard 'POSIXct' type.
Author: Dirk Eddelbuettel and Leonardo Silvestri
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between nanotime versions 0.2.0 dated 2017-06-22 and 0.2.1 dated 2018-07-01
ChangeLog | 23 +++++++++++++++++++++++ DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- R/nanotime.R | 19 +++++++++++++------ inst/NEWS.Rd | 9 +++++++++ man/nanotime.Rd | 3 +++ 6 files changed, 57 insertions(+), 15 deletions(-)
Title: Efficient Breeding by Genomic Mating
Description: Implements the genomic mating approach in the recently published article: Akdemir, D., & Sanchez, J. I. (2016). Efficient Breeding by Genomic Mating. Frontiers in Genetics, 7. <DOI:10.3389/fgene.2016.00210>.
Author: Deniz Akdemir, Julio Isidro Sanch\'ez, Hanna Haikka, Itaraju Baracuhy Brum
Maintainer: Deniz Akdemir <deniz.akdemir.work@gmail.com>
Diff between GenomicMating versions 1.3 dated 2017-10-02 and 2.0 dated 2018-07-01
GenomicMating-1.3/GenomicMating/R/Amatinpieces.R |only GenomicMating-1.3/GenomicMating/man/Amatinpieces.rd |only GenomicMating-2.0/GenomicMating/DESCRIPTION | 15 GenomicMating-2.0/GenomicMating/MD5 | 32 GenomicMating-2.0/GenomicMating/NAMESPACE | 13 GenomicMating-2.0/GenomicMating/R/Amat.pieces.R |only GenomicMating-2.0/GenomicMating/R/MatingPrograms.R | 1294 ++++++++-- GenomicMating-2.0/GenomicMating/R/RcppExports.R | 12 GenomicMating-2.0/GenomicMating/R/getOptParentalProportions.R |only GenomicMating-2.0/GenomicMating/R/init.R |only GenomicMating-2.0/GenomicMating/build/partial.rdb |binary GenomicMating-2.0/GenomicMating/inst |only GenomicMating-2.0/GenomicMating/man/Amat.pieces.Rd |only GenomicMating-2.0/GenomicMating/man/GenomicMating-package.Rd | 12 GenomicMating-2.0/GenomicMating/man/getGaSolutions.rd | 228 + GenomicMating-2.0/GenomicMating/man/getGaSolutionsFrontier.Rd | 109 GenomicMating-2.0/GenomicMating/man/getGaSolutionsFrontierMultiTrait.Rd |only GenomicMating-2.0/GenomicMating/man/getGaSolutionsFrontierMultiTraitSimcross.Rd |only GenomicMating-2.0/GenomicMating/man/getOptParentalProportions.rd |only GenomicMating-2.0/GenomicMating/man/plotGM.rd |only GenomicMating-2.0/GenomicMating/src/MatingPrograms.cpp | 307 ++ GenomicMating-2.0/GenomicMating/src/RcppExports.cpp | 43 22 files changed, 1705 insertions(+), 360 deletions(-)
Title: Business Process Analysis in R
Description: Comprehensive Business Process Analysis toolkit. Creates S3-class for event log objects, and related handler functions. Imports related packages for filtering event data, computation of descriptive statistics, handling of 'Petri Net' objects and visualization of process maps. See also packages 'edeaR','processmapR', 'eventdataR' and 'processmonitR'.
Author: Gert Janssenswillen [aut, cre]
Maintainer: Gert Janssenswillen <gert.janssenswillen@uhasselt.be>
Diff between bupaR versions 0.4.0 dated 2018-03-21 and 0.4.1 dated 2018-07-01
DESCRIPTION | 8 ++-- MD5 | 30 ++++++++++++----- NAMESPACE | 44 +++++++++++++++++++++++++ R/add_start_end_activity.R |only R/fill.eventlog.R |only R/first_n.R |only R/last_n.R |only R/print.eventlog.R | 4 +- R/select.R |only R/set_eventlog_attributes.R |only R/slice.eventlog.R | 76 ++++++++++++++++++++++++++++++++++++++++++++ R/unite.eventlog.R | 22 +++++------- R/zzz.R | 2 - README.md | 5 +- man/add_end_activity.Rd |only man/fill.Rd |only man/first_n.Rd |only man/last_n.Rd |only man/select.Rd |only man/set_case_id.Rd |only man/slice_activities.Rd |only man/slice_events.Rd |only man/unite.Rd | 2 - 23 files changed, 164 insertions(+), 29 deletions(-)
Title: Parsing, Applying, and Manipulating Data Cleaning Rules
Description: Facilitates reading and manipulating (multivariate) data restrictions
(edit rules) on numerical and categorical data. Rules can be defined with common R syntax
and parsed to an internal (matrix-like format). Rules can be manipulated with
variable elimination and value substitution methods, allowing for feasibility checks
and more. Data can be tested against the rules and erroneous fields can be found based
on Fellegi and Holt's generalized principle. Rules dependencies can be visualized with
using the 'igraph' package.
Author: Edwin de Jonge, Mark van der Loo
Maintainer: Edwin de Jonge <edwindjonge@gmail.com>
Diff between editrules versions 2.9.0 dated 2015-06-11 and 2.9.3 dated 2018-07-01
editrules-2.9.0/editrules/tests/test_all.R |only editrules-2.9.3/editrules/DESCRIPTION | 26 editrules-2.9.3/editrules/MD5 | 390 ++-- editrules-2.9.3/editrules/NAMESPACE | 308 +-- editrules-2.9.3/editrules/NEWS | 572 +++--- editrules-2.9.3/editrules/R/adjacency.R | 196 +- editrules-2.9.3/editrules/R/as.igraph.R | 102 - editrules-2.9.3/editrules/R/as.matrix.R | 52 editrules-2.9.3/editrules/R/backtracker.R | 366 +-- editrules-2.9.3/editrules/R/blocks.R | 140 - editrules-2.9.3/editrules/R/c.R | 152 - editrules-2.9.3/editrules/R/cateditmatrix.R | 352 +-- editrules-2.9.3/editrules/R/checkDatamodel.R | 202 +- editrules-2.9.3/editrules/R/checkRows.R | 154 - editrules-2.9.3/editrules/R/contains.R | 320 +-- editrules-2.9.3/editrules/R/disjunct.R | 260 +- editrules-2.9.3/editrules/R/duplicated.R | 62 editrules-2.9.3/editrules/R/echelon.R | 138 - editrules-2.9.3/editrules/R/editAttr.R | 78 editrules-2.9.3/editrules/R/editarray.R | 484 ++--- editrules-2.9.3/editrules/R/editarrayAttr.R | 103 - editrules-2.9.3/editrules/R/editfile.R | 90 editrules-2.9.3/editrules/R/editmatrix.R | 511 ++--- editrules-2.9.3/editrules/R/editmatrixAttr.R | 238 +- editrules-2.9.3/editrules/R/editrules-data.R | 22 editrules-2.9.3/editrules/R/editset.R | 739 +++---- editrules-2.9.3/editrules/R/eliminate.R | 460 ++-- editrules-2.9.3/editrules/R/errorLocalizer.R | 934 +++++----- editrules-2.9.3/editrules/R/errorLocalizer_mip.R | 514 ++--- editrules-2.9.3/editrules/R/errorLocation.R | 350 +-- editrules-2.9.3/editrules/R/expandEdits.R | 148 - editrules-2.9.3/editrules/R/generateEdits.R | 212 +- editrules-2.9.3/editrules/R/getH.R | 70 editrules-2.9.3/editrules/R/getUpperBounds.R | 44 editrules-2.9.3/editrules/R/getVars.R | 196 +- editrules-2.9.3/editrules/R/is.R | 56 editrules-2.9.3/editrules/R/isFeasible.R | 90 editrules-2.9.3/editrules/R/isObviouslyInfeasible.R | 188 +- editrules-2.9.3/editrules/R/isObviouslyRedundant.R | 252 +- editrules-2.9.3/editrules/R/isSubset.R | 110 - editrules-2.9.3/editrules/R/localizeErrors.R | 578 +++--- editrules-2.9.3/editrules/R/mip.R | 236 +- editrules-2.9.3/editrules/R/parseCat.R | 182 - editrules-2.9.3/editrules/R/parseEdits.R | 130 - editrules-2.9.3/editrules/R/parseMix.R | 270 +- editrules-2.9.3/editrules/R/parseNum.R | 200 +- editrules-2.9.3/editrules/R/perturbWeights.R | 28 editrules-2.9.3/editrules/R/pkg.R | 162 - editrules-2.9.3/editrules/R/plot.R | 464 ++-- editrules-2.9.3/editrules/R/plot_errorLocation.R | 282 +-- editrules-2.9.3/editrules/R/print.R | 266 +- editrules-2.9.3/editrules/R/reduce.R | 318 +-- editrules-2.9.3/editrules/R/removeRedundant.R | 60 editrules-2.9.3/editrules/R/softEdits.R | 234 +- editrules-2.9.3/editrules/R/str.R | 48 editrules-2.9.3/editrules/R/subsetting.R | 214 +- editrules-2.9.3/editrules/R/substValue.R | 592 +++--- editrules-2.9.3/editrules/R/summary.R | 329 +-- editrules-2.9.3/editrules/R/violatedEdits.R | 516 ++--- editrules-2.9.3/editrules/R/writeELAsMip.R | 286 +-- editrules-2.9.3/editrules/R/zzz.R | 42 editrules-2.9.3/editrules/build/vignette.rds |binary editrules-2.9.3/editrules/inst/doc/editrules-vignette.Rnw | 38 editrules-2.9.3/editrules/inst/doc/editrules-vignette.pdf |binary editrules-2.9.3/editrules/inst/script/bench/benchAB.R | 322 +-- editrules-2.9.3/editrules/inst/script/bench/benchMIP.R | 150 - editrules-2.9.3/editrules/inst/script/bench/benchmip_balance.R | 176 - editrules-2.9.3/editrules/inst/script/bench/benchmip_categorical.R | 154 - editrules-2.9.3/editrules/inst/script/bench/benchmip_mixed.R | 224 +- editrules-2.9.3/editrules/inst/script/bench/benchmip_mixed2.R | 180 - editrules-2.9.3/editrules/inst/script/bench/edits.R | 474 ++--- editrules-2.9.3/editrules/inst/script/bench/eliminator.R | 726 +++---- editrules-2.9.3/editrules/inst/script/bench/randomEdits.R | 158 - editrules-2.9.3/editrules/inst/script/edits/mixedits.R | 52 editrules-2.9.3/editrules/inst/script/edits/myedits.txt | 46 editrules-2.9.3/editrules/man/adddummies.Rd | 41 editrules-2.9.3/editrules/man/adjacency.Rd | 341 +-- editrules-2.9.3/editrules/man/as.character.cateditmatrix.Rd | 39 editrules-2.9.3/editrules/man/as.editmatrix.Rd | 65 editrules-2.9.3/editrules/man/as.editset.Rd | 33 editrules-2.9.3/editrules/man/as.lp.mip.Rd | 35 editrules-2.9.3/editrules/man/as.mip.Rd | 65 editrules-2.9.3/editrules/man/asLevels.Rd | 25 editrules-2.9.3/editrules/man/backtracker.Rd | 151 - editrules-2.9.3/editrules/man/blocks.Rd | 125 - editrules-2.9.3/editrules/man/cateditmatrix.Rd | 49 editrules-2.9.3/editrules/man/checkDatamodel.Rd | 57 editrules-2.9.3/editrules/man/condition.Rd | 41 editrules-2.9.3/editrules/man/contains.Rd | 105 - editrules-2.9.3/editrules/man/contains.boolmat.Rd | 39 editrules-2.9.3/editrules/man/datamodel.Rd | 65 editrules-2.9.3/editrules/man/disjunct.Rd | 99 - editrules-2.9.3/editrules/man/duplicated.editarray.Rd | 35 editrules-2.9.3/editrules/man/duplicated.editmatrix.Rd | 41 editrules-2.9.3/editrules/man/echelon.Rd | 69 editrules-2.9.3/editrules/man/editType.Rd | 39 editrules-2.9.3/editrules/man/editarray.Rd | 357 +-- editrules-2.9.3/editrules/man/editfile.Rd | 55 editrules-2.9.3/editrules/man/editmatrix.Rd | 297 +-- editrules-2.9.3/editrules/man/editnames.Rd | 29 editrules-2.9.3/editrules/man/editrules-package.Rd | 164 - editrules-2.9.3/editrules/man/editrules.plotting.Rd | 419 ++-- editrules-2.9.3/editrules/man/edits.Rd | 27 editrules-2.9.3/editrules/man/editset.Rd | 255 +- editrules-2.9.3/editrules/man/eliminate.Rd | 335 +-- editrules-2.9.3/editrules/man/errorLocalizer.Rd | 428 ++-- editrules-2.9.3/editrules/man/errorLocalizer_mip.Rd | 102 - editrules-2.9.3/editrules/man/errorLocation.Rd | 402 ++-- editrules-2.9.3/editrules/man/expandEdits.Rd | 61 editrules-2.9.3/editrules/man/fcf.env.Rd | 91 editrules-2.9.3/editrules/man/generateEdits.Rd | 67 editrules-2.9.3/editrules/man/getA.Rd | 111 - editrules-2.9.3/editrules/man/getAb.Rd | 113 - editrules-2.9.3/editrules/man/getArr.Rd | 37 editrules-2.9.3/editrules/man/getInd.Rd | 41 editrules-2.9.3/editrules/man/getOps.Rd | 111 - editrules-2.9.3/editrules/man/getSep.Rd | 37 editrules-2.9.3/editrules/man/getUpperBounds.Rd | 41 editrules-2.9.3/editrules/man/getVars.Rd | 109 - editrules-2.9.3/editrules/man/getVars.cateditmatrix.Rd | 33 editrules-2.9.3/editrules/man/getVars.editarray.Rd | 25 editrules-2.9.3/editrules/man/getVars.editlist.Rd | 25 editrules-2.9.3/editrules/man/getVars.editmatrix.Rd | 25 editrules-2.9.3/editrules/man/getb.Rd | 111 - editrules-2.9.3/editrules/man/geth.Rd | 63 editrules-2.9.3/editrules/man/getlevels.Rd | 37 editrules-2.9.3/editrules/man/getnames.Rd | 37 editrules-2.9.3/editrules/man/impliedValues.Rd | 67 editrules-2.9.3/editrules/man/ind2char.Rd | 45 editrules-2.9.3/editrules/man/indFromArray.Rd | 35 editrules-2.9.3/editrules/man/is.editrules.Rd | 52 editrules-2.9.3/editrules/man/isFeasible.Rd | 63 editrules-2.9.3/editrules/man/isNormalized.Rd | 41 editrules-2.9.3/editrules/man/isObviouslyInfeasible.Rd | 105 - editrules-2.9.3/editrules/man/isObviouslyRedundant.Rd | 89 editrules-2.9.3/editrules/man/isSubset.Rd | 43 editrules-2.9.3/editrules/man/localize.Rd | 61 editrules-2.9.3/editrules/man/localizeErrors.Rd | 431 ++-- editrules-2.9.3/editrules/man/nedits.Rd | 33 editrules-2.9.3/editrules/man/neweditarray.Rd | 33 editrules-2.9.3/editrules/man/neweditmatrix.Rd | 49 editrules-2.9.3/editrules/man/newerrorlocation.Rd | 49 editrules-2.9.3/editrules/man/normalize.Rd | 115 - editrules-2.9.3/editrules/man/parseCat.Rd | 49 editrules-2.9.3/editrules/man/parseCatEdit.Rd | 37 editrules-2.9.3/editrules/man/parseEdits.Rd | 47 editrules-2.9.3/editrules/man/parseMix.Rd | 47 editrules-2.9.3/editrules/man/parseNum.Rd | 33 editrules-2.9.3/editrules/man/print.backtracker.Rd | 39 editrules-2.9.3/editrules/man/print.cateditmatrix.Rd | 35 editrules-2.9.3/editrules/man/print.editarray.Rd | 39 editrules-2.9.3/editrules/man/print.editlist.Rd | 35 editrules-2.9.3/editrules/man/print.editmatrix.Rd | 39 editrules-2.9.3/editrules/man/print.editset.Rd | 35 editrules-2.9.3/editrules/man/print.editsummary.Rd | 25 editrules-2.9.3/editrules/man/print.errorLocation.Rd | 35 editrules-2.9.3/editrules/man/print.locationsummary.Rd | 25 editrules-2.9.3/editrules/man/print.violatedEdits.Rd | 31 editrules-2.9.3/editrules/man/reduce.Rd | 69 editrules-2.9.3/editrules/man/removeRedundantDummies.Rd | 35 editrules-2.9.3/editrules/man/separate.Rd | 119 - editrules-2.9.3/editrules/man/simplify.Rd | 37 editrules-2.9.3/editrules/man/softEdits.Rd | 39 editrules-2.9.3/editrules/man/softEdits.cateditmatrix.Rd | 39 editrules-2.9.3/editrules/man/softEdits.editarray.Rd | 39 editrules-2.9.3/editrules/man/softEdits.editmatrix.Rd | 41 editrules-2.9.3/editrules/man/subsetting.Rd | 85 editrules-2.9.3/editrules/man/substValue.Rd | 215 +- editrules-2.9.3/editrules/man/violatedEdits.Rd | 249 +- editrules-2.9.3/editrules/man/writeELAsMip.Rd | 55 editrules-2.9.3/editrules/tests/testthat.R |only editrules-2.9.3/editrules/tests/testthat/edit_test_1.txt | 24 editrules-2.9.3/editrules/tests/testthat/testBlocks.R | 94 - editrules-2.9.3/editrules/tests/testthat/testCheck.R | 88 editrules-2.9.3/editrules/tests/testthat/testCheckDatamodel.R | 266 +- editrules-2.9.3/editrules/tests/testthat/testContains.R | 62 editrules-2.9.3/editrules/tests/testthat/testDuplicated.R | 26 editrules-2.9.3/editrules/tests/testthat/testEditRow.R | 52 editrules-2.9.3/editrules/tests/testthat/testEditset.R | 243 +- editrules-2.9.3/editrules/tests/testthat/testErrorLocalizer.R | 177 - editrules-2.9.3/editrules/tests/testthat/testFourierMotzkin.R | 82 editrules-2.9.3/editrules/tests/testthat/testIsFeasible.R | 76 editrules-2.9.3/editrules/tests/testthat/testIsObviouslyInfeasible.R | 36 editrules-2.9.3/editrules/tests/testthat/testIsObviouslyRedundant.R | 46 editrules-2.9.3/editrules/tests/testthat/testLocalizeErrors.R | 305 +-- editrules-2.9.3/editrules/tests/testthat/testParseEdits.R | 151 - editrules-2.9.3/editrules/tests/testthat/testSubstValue.R | 149 - editrules-2.9.3/editrules/tests/testthat/testViolatedEdits.R | 335 +-- editrules-2.9.3/editrules/tests/testthat/testc.R | 44 editrules-2.9.3/editrules/tests/testthat/testdatamodel.R | 35 editrules-2.9.3/editrules/tests/testthat/testechelon.R | 78 editrules-2.9.3/editrules/tests/testthat/testeditarray.R | 94 - editrules-2.9.3/editrules/tests/testthat/testeditmatrix.R | 326 +-- editrules-2.9.3/editrules/tests/testthat/testeditmatrixAttr.R | 94 - editrules-2.9.3/editrules/tests/testthat/testgetVars.R | 43 editrules-2.9.3/editrules/tests/testthat/testlocalizeErrors_mip.R | 830 ++++---- editrules-2.9.3/editrules/vignettes/editrules-vignette.Rnw | 38 197 files changed, 14982 insertions(+), 15118 deletions(-)
Title: Query Search Interfaces
Description: Provides a search interface to look up terms
on 'Google', 'Bing', 'ixquick', 'DuckDuckGo', 'StackOverflow', 'GitHub', and 'BitBucket'.
Upon searching, a browser window will open with the aforementioned search
results.
Author: James Balamuta [aut, cre] (<https://orcid.org/0000-0003-2826-8458>)
Maintainer: James Balamuta <balamut2@illinois.edu>
Diff between searcher versions 0.0.2 dated 2018-01-16 and 0.0.3 dated 2018-07-01
DESCRIPTION | 15 +++-- MD5 | 20 +++---- NAMESPACE | 1 NEWS.md | 17 ++++++ R/search-functions.R | 80 ++++++++++++++++++++-------- R/utilities.R | 27 +++++++++ README.md | 22 ++++++- man/search_site.Rd | 27 +++++++-- man/searcher-package.Rd | 12 +++- man/searcher.Rd | 2 tests/testthat/test-searcher.R | 115 +++++++++++++++++++++++++++++++++++++++++ 11 files changed, 288 insertions(+), 50 deletions(-)
Title: Depth Measures in Multivariate, Regression and Functional
Settings
Description: Tools to compute depth measures and implementations of related
tasks such as outlier detection, data exploration and
classification of multivariate, regression and functional data.
Author: Pieter Segaert [aut, cre],
Mia Hubert [aut],
Peter Rousseeuw [aut],
Jakob Raymaekers [aut],
Kaveh Vakili [ctb]
Maintainer: Pieter Segaert <Pieter.Segaert@kuleuven.be>
Diff between mrfDepth versions 1.0.6 dated 2017-11-23 and 1.0.7 dated 2018-07-01
mrfDepth-1.0.6/mrfDepth/data/characterTrajectories.RData |only mrfDepth-1.0.6/mrfDepth/man/characterTrajectories.Rd |only mrfDepth-1.0.7/mrfDepth/DESCRIPTION | 8 - mrfDepth-1.0.7/mrfDepth/MD5 | 25 +++-- mrfDepth-1.0.7/mrfDepth/data/characterA.rdata |only mrfDepth-1.0.7/mrfDepth/data/characterI.rdata |only mrfDepth-1.0.7/mrfDepth/data/datalist |only mrfDepth-1.0.7/mrfDepth/data/mri.rdata |only mrfDepth-1.0.7/mrfDepth/data/plane.rdata |only mrfDepth-1.0.7/mrfDepth/data/tablets.rdata |only mrfDepth-1.0.7/mrfDepth/data/wine.rdata |only mrfDepth-1.0.7/mrfDepth/inst/NEWS.Rd | 17 +++ mrfDepth-1.0.7/mrfDepth/man/characterA.Rd |only mrfDepth-1.0.7/mrfDepth/man/characterI.Rd |only mrfDepth-1.0.7/mrfDepth/man/distSpace.Rd | 3 mrfDepth-1.0.7/mrfDepth/man/mfdmedian.Rd | 4 mrfDepth-1.0.7/mrfDepth/man/mri.Rd |only mrfDepth-1.0.7/mrfDepth/man/plane.Rd |only mrfDepth-1.0.7/mrfDepth/man/tablets.Rd |only mrfDepth-1.0.7/mrfDepth/man/wine.Rd |only mrfDepth-1.0.7/mrfDepth/src/randy.cpp | 73 +++++---------- 21 files changed, 70 insertions(+), 60 deletions(-)
Title: Nested and Crossed Block Designs for Factorial, Fractional
Factorial and Unstructured Treatment Sets
Description: Constructs D-optimal or near D-optimal nested and crossed
block designs for unstructured or general factorial treatment designs.
Where a structured treatment design is required, a D-optimal or near
D-optimal treatment design is found based on a suitable model
matrix design formula. The required block design is then found for the
required treatment design based on a defined set of block factors.
The block factors are added in sequence and each added block factor
is optimized conditional on all previously added block factors.
The block design can have repeated nesting down to any required
depth of nesting with either a simple set of nested blocks or a
crossed blocks design at each level of nesting. If a crossed
blocks design has more than a single plot in each crossed blocks
intersection, the determinant of a weighted combination of the
information matrix for additive crossed blocks effects and the
information matrix for multiplicative crossed blocks effects
is used as the design criterion. Outputs include a table
showing the allocation of treatments to blocks and tables showing
the achieved D-efficiency factors for each block and treatment design.
Author: R. N. Edmondson.
Maintainer: Rodney Edmondson <rodney.edmondson@gmail.com>
Diff between blocksdesign versions 2.9 dated 2018-06-12 and 3.0 dated 2018-07-01
DESCRIPTION | 8 MD5 | 14 - R/design.r | 385 ++++++++++++++++++++------------------------- inst/doc/blocksdesign.R | 82 ++++----- inst/doc/blocksdesign.Rmd | 200 ++++++++++++----------- inst/doc/blocksdesign.html | 286 ++++++++++++++------------------- man/design.Rd | 95 ++++++----- vignettes/blocksdesign.Rmd | 200 ++++++++++++----------- 8 files changed, 613 insertions(+), 657 deletions(-)
Title: Parallel Pseudo Random Number Generator (PPRNG) 'sitmo' Header
Files
Description: Provided within are two high quality and fast PPRNGs that may be
used in an 'OpenMP' parallel environment. In addition, there is a generator
for one dimensional low-discrepancy sequence. The objective of this library
to consolidate the distribution of the 'sitmo' (C++98 & C++11), 'threefry' and
'vandercorput' (C++11-only) engines on CRAN by enabling others to link to the
header files inside of 'sitmo' instead of including a copy of each engine
within their individual package. Lastly, the package contains example
implementations using the 'sitmo' package and three accompanying vignette that
provide additional information.
Author: James Balamuta [aut, cre, cph],
Thijs van den Berg [aut, cph],
Ralf Stubner [ctb]
Maintainer: James Balamuta <balamut2@illinois.edu>
Diff between sitmo versions 1.2.2 dated 2017-11-18 and 2.0.0 dated 2018-07-01
sitmo-1.2.2/sitmo/R/inline-plugin.R |only sitmo-2.0.0/sitmo/DESCRIPTION | 28 sitmo-2.0.0/sitmo/MD5 | 39 sitmo-2.0.0/sitmo/NAMESPACE | 1 sitmo-2.0.0/sitmo/NEWS.md | 12 sitmo-2.0.0/sitmo/README.md | 130 sitmo-2.0.0/sitmo/build/vignette.rds |binary sitmo-2.0.0/sitmo/inst/doc/big_crush_test.html | 7642 ++++++++--------- sitmo-2.0.0/sitmo/inst/doc/sitmo_internals.R | 14 sitmo-2.0.0/sitmo/inst/doc/sitmo_internals.Rmd | 115 sitmo-2.0.0/sitmo/inst/doc/sitmo_internals.html | 761 - sitmo-2.0.0/sitmo/inst/doc/uniform_rng_with_sitmo.Rmd | 6 sitmo-2.0.0/sitmo/inst/doc/uniform_rng_with_sitmo.html | 268 sitmo-2.0.0/sitmo/inst/include/sitmo.h | 4 sitmo-2.0.0/sitmo/inst/include/threefry.h |only sitmo-2.0.0/sitmo/inst/include/vandercorput.h |only sitmo-2.0.0/sitmo/man/sitmo-package.Rd | 19 sitmo-2.0.0/sitmo/src/sitmo_demo.cpp | 10 sitmo-2.0.0/sitmo/src/sitmo_parallel.cpp | 2 sitmo-2.0.0/sitmo/src/sitmo_runif.cpp | 4 sitmo-2.0.0/sitmo/vignettes/sitmo_internals.Rmd | 115 sitmo-2.0.0/sitmo/vignettes/uniform_rng_with_sitmo.Rmd | 6 22 files changed, 4696 insertions(+), 4480 deletions(-)
Title: 'jQuery UI' Interactions and Effects for Shiny
Description: An extension to shiny that brings interactions and animation effects from
'jQuery UI' library.
Author: Yang Tang [aut, cre]
Maintainer: Yang Tang <tang_yang@outlook.com>
Diff between shinyjqui versions 0.2.0 dated 2017-07-04 and 0.3.0 dated 2018-07-01
shinyjqui-0.2.0/shinyjqui/R/animation_effects.R |only shinyjqui-0.2.0/shinyjqui/R/class_animation.R |only shinyjqui-0.2.0/shinyjqui/R/mouse_interactions.R |only shinyjqui-0.2.0/shinyjqui/man/Class_animation.Rd |only shinyjqui-0.2.0/shinyjqui/man/Effect_and_visibility.Rd |only shinyjqui-0.3.0/shinyjqui/DESCRIPTION | 8 shinyjqui-0.3.0/shinyjqui/MD5 | 95 - shinyjqui-0.3.0/shinyjqui/NAMESPACE | 7 shinyjqui-0.3.0/shinyjqui/NEWS.md | 14 shinyjqui-0.3.0/shinyjqui/R/draggableModalDialog.R |only shinyjqui-0.3.0/shinyjqui/R/effects.R |only shinyjqui-0.3.0/shinyjqui/R/includeJqueryUI.R | 14 shinyjqui-0.3.0/shinyjqui/R/interactions.R |only shinyjqui-0.3.0/shinyjqui/R/orderInput.R | 66 shinyjqui-0.3.0/shinyjqui/R/selectableTableOutput.R |only shinyjqui-0.3.0/shinyjqui/R/sortableCheckboxGroupInput.R |only shinyjqui-0.3.0/shinyjqui/R/sortableRadioButtons.R |only shinyjqui-0.3.0/shinyjqui/R/sortableTableOutput.R |only shinyjqui-0.3.0/shinyjqui/R/sortableTabsetPanel.R |only shinyjqui-0.3.0/shinyjqui/R/utils.R | 127 - shinyjqui-0.3.0/shinyjqui/README.md | 53 shinyjqui-0.3.0/shinyjqui/build/vignette.rds |binary shinyjqui-0.3.0/shinyjqui/inst/doc/introduction.R | 90 - shinyjqui-0.3.0/shinyjqui/inst/doc/introduction.Rmd | 126 - shinyjqui-0.3.0/shinyjqui/inst/doc/introduction.html | 171 -- shinyjqui-0.3.0/shinyjqui/inst/doc/orderInput.html | 4 shinyjqui-0.3.0/shinyjqui/inst/doc/save-and-restore.R |only shinyjqui-0.3.0/shinyjqui/inst/doc/save-and-restore.Rmd |only shinyjqui-0.3.0/shinyjqui/inst/doc/save-and-restore.html |only shinyjqui-0.3.0/shinyjqui/inst/fig/README-selectableTableOutput_cell.gif |only shinyjqui-0.3.0/shinyjqui/inst/fig/README-sortableTableOutput.gif |only shinyjqui-0.3.0/shinyjqui/inst/shinydemos/draggable_bookmark.R |only shinyjqui-0.3.0/shinyjqui/inst/shinydemos/draggable_droppable.R | 24 shinyjqui-0.3.0/shinyjqui/inst/shinydemos/draggable_modal.R |only shinyjqui-0.3.0/shinyjqui/inst/shinydemos/draggable_save_load.R |only shinyjqui-0.3.0/shinyjqui/inst/shinydemos/draggable_shiny_input.R | 2 shinyjqui-0.3.0/shinyjqui/inst/shinydemos/orderInput_bookmarking.R |only shinyjqui-0.3.0/shinyjqui/inst/shinydemos/resizable.R | 34 shinyjqui-0.3.0/shinyjqui/inst/shinydemos/resizable_bookmark.R |only shinyjqui-0.3.0/shinyjqui/inst/shinydemos/resizable_combine_with_other_interactions.R |only shinyjqui-0.3.0/shinyjqui/inst/shinydemos/resizable_save_load.R |only shinyjqui-0.3.0/shinyjqui/inst/shinydemos/selectable.R | 4 shinyjqui-0.3.0/shinyjqui/inst/shinydemos/selectableTable.R |only shinyjqui-0.3.0/shinyjqui/inst/shinydemos/selectable_bookmarking.R |only shinyjqui-0.3.0/shinyjqui/inst/shinydemos/selectable_save_load.R |only shinyjqui-0.3.0/shinyjqui/inst/shinydemos/shinyInputs.R |only shinyjqui-0.3.0/shinyjqui/inst/shinydemos/sort.R |only shinyjqui-0.3.0/shinyjqui/inst/shinydemos/sortable.R | 16 shinyjqui-0.3.0/shinyjqui/inst/shinydemos/sortableCheckboxGroupInput.R |only shinyjqui-0.3.0/shinyjqui/inst/shinydemos/sortableRadioButtons.R |only shinyjqui-0.3.0/shinyjqui/inst/shinydemos/sortableTable.R |only shinyjqui-0.3.0/shinyjqui/inst/shinydemos/sortableTabsetInput.R |only shinyjqui-0.3.0/shinyjqui/inst/shinydemos/sortable_bookmarking.R |only shinyjqui-0.3.0/shinyjqui/inst/shinydemos/sortable_save_load.R |only shinyjqui-0.3.0/shinyjqui/inst/www/shinyjqui.js | 815 ++++++---- shinyjqui-0.3.0/shinyjqui/inst/www/shinyjqui.min.js | 2 shinyjqui-0.3.0/shinyjqui/man/Animation_effects.Rd |only shinyjqui-0.3.0/shinyjqui/man/Class_effects.Rd |only shinyjqui-0.3.0/shinyjqui/man/Interactions.Rd | 170 +- shinyjqui-0.3.0/shinyjqui/man/draggableModalDialog.Rd |only shinyjqui-0.3.0/shinyjqui/man/get_jqui_effects.Rd | 2 shinyjqui-0.3.0/shinyjqui/man/jqui_bookmarking.Rd |only shinyjqui-0.3.0/shinyjqui/man/selectableTableOutput.Rd |only shinyjqui-0.3.0/shinyjqui/man/sortableCheckboxGroupInput.Rd |only shinyjqui-0.3.0/shinyjqui/man/sortableRadioButtons.Rd |only shinyjqui-0.3.0/shinyjqui/man/sortableTableOutput.Rd |only shinyjqui-0.3.0/shinyjqui/man/sortableTabsetPanel.Rd |only shinyjqui-0.3.0/shinyjqui/vignettes/fig/selectableTableOutput_cell.gif |only shinyjqui-0.3.0/shinyjqui/vignettes/fig/selectableTableOutput_row.gif |only shinyjqui-0.3.0/shinyjqui/vignettes/fig/sortableCheckboxGroupInput.gif |only shinyjqui-0.3.0/shinyjqui/vignettes/fig/sortableTableOutput.gif |only shinyjqui-0.3.0/shinyjqui/vignettes/fig/sortableTabsetPanel.gif |only shinyjqui-0.3.0/shinyjqui/vignettes/introduction.Rmd | 126 - shinyjqui-0.3.0/shinyjqui/vignettes/save-and-restore.Rmd |only 74 files changed, 1171 insertions(+), 799 deletions(-)
Title: Bayesian Additive Regression Trees Using Particle Gibbs Sampler
and Gibbs/Metropolis-Hastings Sampler
Description: The Particle Gibbs sampler and Gibbs/Metropolis-Hastings sampler were implemented
to fit Bayesian additive regression tree model. Construction of the model (training) and prediction
for a new data set (testing) can be separated. Our reference paper is:
Lakshminarayanan B, Roy D, Teh Y W. Particle Gibbs for Bayesian additive regression trees[C],
Artificial Intelligence and Statistics. 2015: 553-561,
<http://proceedings.mlr.press/v38/lakshminarayanan15.pdf>.
Author: Pingyu Wang [aut, cre],
Dai Feng [aut],
Yang Bai [aut],
Qiuyue Shi [aut],
Zhicheng Zhao [aut],
Fei Su [aut],
Hugh Chipman [aut],
Robert McCulloch [aut]
Maintainer: Pingyu Wang <applewangpingyu@gmail.com>
Diff between pgbart versions 0.6.10 dated 2018-06-30 and 0.6.11 dated 2018-07-01
DESCRIPTION | 6 +++--- MD5 | 6 +++--- src/Serialize.h | 27 ++++++++++++++++++++------- src/pg.cpp | 2 +- 4 files changed, 27 insertions(+), 14 deletions(-)
More information about tropicalSparse at CRAN
Permanent link
Title: Simulation of Correlated Data with Multiple Variable Types
Including Continuous and Count Mixture Distributions
Description: Generate continuous (normal, non-normal, or mixture distributions), binary, ordinal,
and count (regular or zero-inflated, Poisson or Negative Binomial) variables with a specified
correlation matrix, or one continuous variable with a mixture distribution. This package can
be used to simulate data sets that mimic real-world clinical or genetic data sets (i.e.,
plasmodes, as in Vaughan et al., 2009 <DOI:10.1016/j.csda.2008.02.032>). The methods
extend those found in the 'SimMultiCorrData' R package. Standard normal variables with an
imposed intermediate correlation matrix are transformed to generate the desired distributions.
Continuous variables are simulated using either Fleishman (1978)'s third order
<DOI:10.1007/BF02293811> or Headrick (2002)'s fifth order
<DOI:10.1016/S0167-9473(02)00072-5> polynomial transformation method (the power method
transformation, PMT). Non-mixture distributions require the user to specify mean, variance,
skewness, standardized kurtosis, and standardized fifth and sixth cumulants. Mixture
distributions require these inputs for the component distributions plus the mixing
probabilities. Simulation occurs at the component level for continuous mixture
distributions. The target correlation matrix is specified in terms of correlations with
components of continuous mixture variables. These components are transformed into the
desired mixture variables using random multinomial variables based on the mixing
probabilities. However, the package provides functions to approximate expected correlations
with continuous mixture variables given target correlations with the components. Binary and
ordinal variables are simulated using a modification of ordsample() in package 'GenOrd'.
Count variables are simulated using the inverse CDF method. There are two simulation
pathways which calculate intermediate correlations involving count variables differently.
Correlation Method 1 adapts Yahav and Shmueli's 2012 method <DOI:10.1002/asmb.901> and
performs best with large count variable means and positive correlations or small means and
negative correlations. Correlation Method 2 adapts Barbiero and Ferrari's 2015
modification of the 'GenOrd' package <DOI:10.1002/asmb.2072> and performs best under the
opposite scenarios. The optional error loop may be used to improve the accuracy of the
final correlation matrix. The package also contains functions to calculate the
standardized cumulants of continuous mixture distributions, check parameter inputs,
calculate feasible correlation boundaries, and summarize and plot simulated variables.
Author: Allison Cynthia Fialkowski
Maintainer: Allison Cynthia Fialkowski <allijazz@uab.edu>
Diff between SimCorrMix versions 0.1.0 dated 2018-02-26 and 0.1.1 dated 2018-07-01
DESCRIPTION | 6 +-- MD5 | 54 ++++++++++++++--------------- NEWS.md | 3 + R/SimCorrMix.R | 10 ++--- R/corrvar2.R | 4 +- R/intercorr_cat_pois.R | 2 - R/intercorr_cont.R | 2 - R/intercorr_cont_pois.R | 2 - R/intercorr_pois.R | 2 - R/norm_ord.R | 8 ++-- R/plot_simtheory.R | 4 +- README.md | 5 ++ build/partial.rdb |binary build/vignette.rds |binary inst/doc/cont_mixture.html | 16 ++++---- inst/doc/corr_mixture.html | 18 ++++----- inst/doc/method_comp.html | 18 ++++----- inst/doc/variable_types.html | 24 ++++++------ inst/doc/workflow.html | 18 ++++----- man/SimCorrMix.Rd | 10 ++--- man/corrvar2.Rd | 4 +- man/intercorr_cat_pois.Rd | 2 - man/intercorr_cont.Rd | 2 - man/intercorr_cont_pois.Rd | 2 - man/intercorr_pois.Rd | 2 - man/norm_ord.Rd | 8 ++-- man/plot_simtheory.Rd | 4 +- vignettes/Bibliography.bib | 80 +++++++++++++++++++------------------------ 28 files changed, 154 insertions(+), 156 deletions(-)
More information about PRISM.forecast at CRAN
Permanent link
Title: Robust Multiple Imputation with Generalized Additive Models for
Location Scale and Shape
Description: Provides new imputation methods for the 'mice' package based on generalized additive models for location, scale, and shape (GAMLSS) as described in de Jong, van Buuren and Spiess <doi:10.1080/03610918.2014.911894>.
Author: Daniel Salfran [aut, cre],
Martin Spieß [aut, ths]
Maintainer: Daniel Salfran <danielsalfran@gmail.com>
Diff between ImputeRobust versions 1.2 dated 2017-08-18 and 1.3 dated 2018-07-01
DESCRIPTION | 18 +++++++++--------- MD5 | 6 +++--- NEWS | 5 +++++ R/mice_impute_gamlss.R | 10 +++++----- 4 files changed, 22 insertions(+), 17 deletions(-)
Title: Query 'HaploReg', 'RegulomeDB', 'LDlink'
Description: A set of utilities for querying
'HaploReg' <http://archive.broadinstitute.org/mammals/haploreg/haploreg.php>,
'RegulomeDB' <http://www.regulomedb.org>, and LDlink <https://analysistools.nci.nih.gov/LDlink>
web-based tools. The package connects to
'HaploReg', 'RegulomeDB' and 'LDlink', searches and downloads results, without
opening web pages, directly from R environment.
Results are stored in a data frame that can be directly used in various
kinds of downstream analyses.
Author: Ilya Y. Zhbannikov [aut, cre],
Konstantin G. Arbeev [aut],
Anatoliy I. Yashin [aut]
Maintainer: Ilya Y. Zhbannikov <ilya.zhbannikov@duke.edu>
Diff between haploR versions 1.6.4 dated 2018-05-23 and 2.0.3 dated 2018-07-01
DESCRIPTION | 27 ++- MD5 | 33 ++-- NAMESPACE | 11 + R/LDlink.R |only R/general.R | 5 R/haploreg.R | 32 ++-- R/haploregExtendedView.R | 51 +++--- R/settings.R |only R/utils.R |only README.md | 82 ++++++++-- inst/NEWS | 8 - inst/doc/haplor-vignette.R | 13 + inst/doc/haplor-vignette.Rmd | 63 +++++++ inst/doc/haplor-vignette.html | 269 +++++++++++++++++++++------------- inst/unitTests/test_LDlink.R |only man/haploR-LDlink.LDmatrix.Rd |only man/haploR-as.num.Rd |only man/haploR-makeStylishLDmatrix.Rd |only man/haploR-queryRegulome.Rd | 4 vignettes/haplor-vignette.Rmd | 63 +++++++ vignettes/stylish.ldmatrix.dprime.png |only vignettes/stylish.ldmatrix.r2.png |only 22 files changed, 478 insertions(+), 183 deletions(-)
Title: Dynamic Hazard Models using State Space Models
Description: Contains functions that lets you fit dynamic hazard models using
state space models. The first implemented model is described in Fahrmeir
(1992) <doi:10.1080/01621459.1992.10475232> and Fahrmeir (1994)
<doi:10.1093/biomet/81.2.317>. Extensions hereof are available where the
Extended Kalman filter is replaced by an unscented Kalman filter and other
options including particle filters.
Author: Benjamin Christoffersen [cre, aut],
Alan Miller [cph],
Anthony Williams [cph],
Boost developers [cph],
R-core [cph]
Maintainer: Benjamin Christoffersen <boennecd@gmail.com>
Diff between dynamichazard versions 0.5.2 dated 2018-06-25 and 0.5.3 dated 2018-07-01
DESCRIPTION | 6 +- MD5 | 18 ++++---- inst/doc/Bootstrap_illustration.pdf |binary inst/doc/Comparing_methods_for_logistic_models.pdf |binary inst/doc/Diagnostics.pdf |binary inst/doc/Particle_filtering.pdf |binary inst/doc/ddhazard.pdf |binary src/problem_data.h | 34 ++++++++++++++- tests/testthat/test_bigglm_wrapper.R | 45 +++++++++++++-------- tests/testthat/test_fixed_effects_in_M_step.R | 38 +++++++++++------ 10 files changed, 97 insertions(+), 44 deletions(-)
Title: 'd3.js' Utilities for R
Description: Helper functions for using 'd3.js' in R.
Author: Mike Bostock [aut, cph] (d3.js library in htmlwidgets/lib,
http://d3js.org),
Kent Russell [aut, cre] (R interface),
Gregor Aisch [aut, cph] (d3-jetpack creator,
https://github.com/gka/d3-jetpack),
Adam Pearce [aut] (core contributor to d3-jetpack),
Ben Ortiz [ctb]
Maintainer: Kent Russell <kent.russell@timelyportfolio.com>
Diff between d3r versions 0.8.1 dated 2018-04-23 and 0.8.2 dated 2018-07-01
DESCRIPTION | 10 +++--- MD5 | 12 +++---- NEWS.md | 5 +++ R/dependencies.R | 4 +- README.md | 70 ++++++++++++++++++++++++++++-------------- inst/www/d3/v5/API.md | 35 +++++++++++++-------- inst/www/d3/v5/dist/d3.min.js | 4 +- 7 files changed, 90 insertions(+), 50 deletions(-)
Title: Extra Image Processing Library Based on 'imager'
Description: Providing several advanced functions for image processing based on the package 'imager'.
Author: Shota Ochi [aut, cre],
Guoshen Yu [ctb, cph],
Guillermo Sapiro [ctb, cph],
Catalina Sbert [ctb, cph],
Image Processing On Line [cph]
Maintainer: Shota Ochi <shotaochi1990@gmail.com>
Diff between imagerExtra versions 1.0 dated 2018-05-29 and 1.1.0 dated 2018-07-01
DESCRIPTION | 11 +- MD5 | 51 +++++++---- NAMESPACE | 16 +++ R/DCT_denoising.R | 33 ------- R/RcppExports.R | 46 ++++++---- R/iterative_triclass_thresholding.R |only R/misc.R | 24 ++++- R/screened_poisson_equation.R | 23 ----- R/simplest_color_balance.R | 4 R/treat_color_image.R |only R/utils.R | 77 +++++++++++++++++- build/vignette.rds |binary data |only inst/doc/gettingstarted.R | 28 ++++-- inst/doc/gettingstarted.Rmd | 50 +++++++++-- inst/doc/gettingstarted.html | 69 +++++++++------- inst/doc/treat_colorimage.R |only inst/doc/treat_colorimage.Rmd |only inst/doc/treat_colorimage.html |only man/BalanceSimplest.Rd | 2 man/GetHue.Rd |only man/Grayscale.Rd |only man/RestoreHue.Rd |only man/ThresholdTriclass.Rd |only man/dogs.Rd |only src/RcppExports.cpp | 29 ++++++ src/iterative_triclass_thresholding.cpp |only src/piecewise_equalization.cpp | 4 tests/testthat/test_DCTdenoising.R | 6 - tests/testthat/test_iterative_triclass_thresholding.R |only tests/testthat/test_treat_color_image.R |only tests/testthat/test_utils.R | 42 +++++++++ vignettes/gettingstarted.Rmd | 50 +++++++++-- vignettes/treat_colorimage.Rmd |only 34 files changed, 401 insertions(+), 164 deletions(-)
Title: Tools for Healthcare Machine Learning
Description: A machine learning toolbox tailored to healthcare data.
Author: Levi Thatcher [aut],
Michael Levy [aut, cre],
Mike Mastanduno [aut],
Taylor Larsen [aut],
Taylor Miller [aut]
Maintainer: Michael Levy <michael.levy@healthcatalyst.com>
Diff between healthcareai versions 2.0.0 dated 2018-04-20 and 2.1.0 dated 2018-07-01
healthcareai-2.0.0/healthcareai/tests/testthat.R |only healthcareai-2.0.0/healthcareai/tests/testthat/Rplots.pdf |only healthcareai-2.0.0/healthcareai/tests/testthat/test-lint.R |only healthcareai-2.1.0/healthcareai/DESCRIPTION | 16 healthcareai-2.1.0/healthcareai/MD5 | 151 +++--- healthcareai-2.1.0/healthcareai/NAMESPACE | 12 healthcareai-2.1.0/healthcareai/NEWS.md | 26 + healthcareai-2.1.0/healthcareai/R/evaluate.R | 76 ++- healthcareai-2.1.0/healthcareai/R/flash_models.R | 37 + healthcareai-2.1.0/healthcareai/R/get_best_levels.R |only healthcareai-2.1.0/healthcareai/R/globals.R | 6 healthcareai-2.1.0/healthcareai/R/hcai-impute.R | 4 healthcareai-2.1.0/healthcareai/R/impute.R | 4 healthcareai-2.1.0/healthcareai/R/interpret.R |only healthcareai-2.1.0/healthcareai/R/list_variables.R |only healthcareai-2.1.0/healthcareai/R/logging.R | 229 ++++++---- healthcareai-2.1.0/healthcareai/R/machine_learn.R | 25 - healthcareai-2.1.0/healthcareai/R/missingness.R | 45 + healthcareai-2.1.0/healthcareai/R/model_list_constructors.R | 48 +- healthcareai-2.1.0/healthcareai/R/model_list_generics.R | 37 + healthcareai-2.1.0/healthcareai/R/models.R | 44 + healthcareai-2.1.0/healthcareai/R/pivot.R | 67 +- healthcareai-2.1.0/healthcareai/R/plot_predictions.R | 2 healthcareai-2.1.0/healthcareai/R/predict.R | 96 +++- healthcareai-2.1.0/healthcareai/R/predict_utils.R | 2 healthcareai-2.1.0/healthcareai/R/prep_data.R | 74 ++- healthcareai-2.1.0/healthcareai/R/prep_data_utils.R | 2 healthcareai-2.1.0/healthcareai/R/save_load.R | 1 healthcareai-2.1.0/healthcareai/R/separate_drgs.R | 3 healthcareai-2.1.0/healthcareai/R/setup_hyperparameters.R | 72 ++- healthcareai-2.1.0/healthcareai/R/train_models.R | 42 + healthcareai-2.1.0/healthcareai/R/training_setup.R | 121 ++++- healthcareai-2.1.0/healthcareai/R/tune_models.R | 47 +- healthcareai-2.1.0/healthcareai/R/utilities.R | 27 - healthcareai-2.1.0/healthcareai/R/variable_importance.R | 95 ++-- healthcareai-2.1.0/healthcareai/README.md | 16 healthcareai-2.1.0/healthcareai/man/add_best_levels.Rd |only healthcareai-2.1.0/healthcareai/man/as.model_list.Rd | 18 healthcareai-2.1.0/healthcareai/man/catalyst_test_deploy_in_prod.Rd | 15 healthcareai-2.1.0/healthcareai/man/evaluate.Rd | 34 + healthcareai-2.1.0/healthcareai/man/figures/README-plot_predictions-1.png |binary healthcareai-2.1.0/healthcareai/man/flash_models.Rd | 19 healthcareai-2.1.0/healthcareai/man/get_hyperparameter_defaults.Rd | 18 healthcareai-2.1.0/healthcareai/man/get_supported_models.Rd | 37 + healthcareai-2.1.0/healthcareai/man/get_variable_importance.Rd | 8 healthcareai-2.1.0/healthcareai/man/interpret.Rd |only healthcareai-2.1.0/healthcareai/man/machine_learn.Rd | 19 healthcareai-2.1.0/healthcareai/man/missingness.Rd | 1 healthcareai-2.1.0/healthcareai/man/pivot.Rd | 39 - healthcareai-2.1.0/healthcareai/man/plot.interpret.Rd |only healthcareai-2.1.0/healthcareai/man/plot.missingness.Rd | 11 healthcareai-2.1.0/healthcareai/man/plot.model_list.Rd | 2 healthcareai-2.1.0/healthcareai/man/plot.variable_importance.Rd | 15 healthcareai-2.1.0/healthcareai/man/predict.model_list.Rd | 24 - 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Title: Circular Statistics, from "Topics in Circular Statistics" (2001)
Description: Circular Statistics, from "Topics in Circular Statistics"
(2001) S. Rao Jammalamadaka and A. SenGupta, World Scientific.
Author: S-plus original by Ulric Lund <ulund@calpoly.edu>, R port by
Claudio Agostinelli <claudio.agostinelli@unitn.it>
Maintainer: Claudio Agostinelli <claudio.agostinelli@unitn.it>
Diff between CircStats versions 0.2-4 dated 2009-10-12 and 0.2-6 dated 2018-07-01
CircStats-0.2-4/CircStats/COPYRIGHT |only CircStats-0.2-4/CircStats/COPYRIGHT.original |only CircStats-0.2-4/CircStats/CREDITS |only CircStats-0.2-4/CircStats/INDEX |only CircStats-0.2-4/CircStats/data/rao.table.R |only CircStats-0.2-4/CircStats/man/plot.edf.Rd |only CircStats-0.2-6/CircStats/DESCRIPTION | 18 ++++---- CircStats-0.2-6/CircStats/MD5 |only CircStats-0.2-6/CircStats/NAMESPACE |only CircStats-0.2-6/CircStats/PORTING | 14 ++---- CircStats-0.2-6/CircStats/R/circular.R | 57 +++++++++------------------ CircStats-0.2-6/CircStats/R/rstable.R | 2 CircStats-0.2-6/CircStats/README | 4 - CircStats-0.2-6/CircStats/data/rao.table.rda |only CircStats-0.2-6/CircStats/inst |only CircStats-0.2-6/CircStats/man/plotedf.Rd |only 16 files changed, 39 insertions(+), 56 deletions(-)