Title: High Dimensional Geometry and Set Operations Using Kernel
Density Estimation, Support Vector Machines, and Convex Hulls
Description: Estimates the shape and volume of high-dimensional datasets and performs set operations: intersection / overlap, union, unique components, inclusion test, and hole detection. Uses stochastic geometry approach to high-dimensional kernel density estimation, support vector machine delineation, and convex hull generation. Applications include modeling trait and niche hypervolumes and species distribution modeling.
Author: Benjamin Blonder, with contributions from David J. Harris
Maintainer: Benjamin Blonder <bblonder@gmail.com>
Diff between hypervolume versions 2.0.10 dated 2018-06-17 and 2.0.11 dated 2018-07-15
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ R/AllClassDefinitions.R | 27 ++++++++++++++++++++------- R/hypervolume_plot.R | 2 +- build/partial.rdb |binary man/plot.Hypervolume.Rd | 2 +- src/MyHeaps.h | 37 +++++++++---------------------------- 7 files changed, 41 insertions(+), 47 deletions(-)
Title: EBI Metagenomics Portal
Description: Functions for querying the EBI Metagenomics Portal <https://www.ebi.ac.uk/metagenomics/>. The current main focus is on taxa abundance data, but the intention is that this package should evolve into a general purpose package for working with EBI Metagenomics data using R.
Author: Darren Wilkinson
Maintainer: Darren Wilkinson <darren.wilkinson@ncl.ac.uk>
Diff between ebimetagenomics versions 0.3 dated 2017-09-07 and 0.4 dated 2018-07-15
DESCRIPTION | 12 ++++++------ MD5 | 4 ++-- R/emg.R | 9 ++++++++- 3 files changed, 16 insertions(+), 9 deletions(-)
More information about ebimetagenomics at CRAN
Permanent link
Title: Wilcoxon Rank Sum Test for Clustered Data
Description: Non-parametric tests (Wilcoxon rank sum test and Wilcoxon signed rank test) for clustered data.
Author: Yujing Jiang [aut, cre],
Mei-Ling Ting Lee [ctb],
Jun Yan [ctb]
Maintainer: Yujing Jiang <yujing.jiang@uconn.edu>
Diff between clusrank versions 0.5-3 dated 2018-05-07 and 0.6-1 dated 2018-07-15
DESCRIPTION | 8 +-- MD5 | 14 ++--- R/clusWilcox.R | 43 +++++++++++++----- R/clusrank.R | 13 ++++- R/clusranksum.R | 114 +++++++++++++++++++++++++++++++++++++++++++++--- R/clussignrank.R | 67 +++++++++++++++------------- man/clusWilcox.test.Rd | 16 ++++-- man/clusrank-package.Rd | 12 ++++- 8 files changed, 218 insertions(+), 69 deletions(-)
Title: Measures of the Sturdiness of Regression Coefficients
Description: Implements the s-values proposed by Ed. Leamer.
It provides a context-minimal approach for sensitivity analysis using extreme
bounds to assess the sturdiness of regression coefficients.
Author: Carlos Cinelli
Maintainer: Carlos Cinelli <carloscinelli@hotmail.com>
Diff between sValues versions 0.1.5 dated 2018-05-22 and 0.1.6 dated 2018-07-15
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NAMESPACE | 1 - R/internal_functions.R | 26 ++++++++++++++++++++++++-- inst/doc/sValues.pdf |binary 5 files changed, 32 insertions(+), 11 deletions(-)
Title: Deprecated 'classic' 'Rcpp' 'API'
Description: The 'RcppClassic' package provides a deprecated C++ library which
facilitates the integration of R and C++. New projects should use the new 'Rcpp'
'API' in the 'Rcpp' package.
Author: Dirk Eddelbuettel and Romain Francois, with contributions by David Reiss,
and based on code written during 2005 and 2006 by Dominick Samperi
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppClassic versions 0.9.10 dated 2018-06-10 and 0.9.11 dated 2018-07-15
ChangeLog | 11 +++++ DESCRIPTION | 8 ++-- MD5 | 16 ++++---- inst/doc/RcppClassic-intro.pdf |binary inst/doc/RcppClassic-unitTests.pdf |binary inst/include/classic/RcppList.h | 18 ++++----- inst/include/classic/RcppList__backward.h | 16 +++----- inst/include/classic/RcppResultSet.h | 49 ++++++++++++------------- inst/include/classic/RcppResultSet__backward.h | 18 ++++----- 9 files changed, 70 insertions(+), 66 deletions(-)
Title: Self Contained Units of Source Code
Description: Provides modules as an organizational unit for source code. Modules
enforce to be more rigorous when defining dependencies and have
a local search path. They can be used as a sub unit within packages
or in scripts.
Author: Sebastian Warnholz [aut, cre]
Maintainer: Sebastian Warnholz <wahani@gmail.com>
Diff between modules versions 0.6.0 dated 2017-07-22 and 0.7.0 dated 2018-07-15
modules-0.6.0/modules/tests/testthat/test-pmodule.R |only modules-0.7.0/modules/DESCRIPTION | 14 - modules-0.7.0/modules/LICENSE | 2 modules-0.7.0/modules/MD5 | 47 ++- modules-0.7.0/modules/NAMESPACE | 7 modules-0.7.0/modules/NEWS | 9 modules-0.7.0/modules/R/NAMESPACE.R | 3 modules-0.7.0/modules/R/amodule.R |only modules-0.7.0/modules/R/depend.R |only modules-0.7.0/modules/R/export.R | 14 - modules-0.7.0/modules/R/extend.R | 2 modules-0.7.0/modules/R/module-class.R | 15 - modules-0.7.0/modules/R/module-coercion.R | 23 + modules-0.7.0/modules/R/module.R | 17 - modules-0.7.0/modules/R/testModule.R |only modules-0.7.0/modules/R/use.R | 29 ++ modules-0.7.0/modules/build/vignette.rds |binary modules-0.7.0/modules/inst/doc/modulesInR.html | 96 +++---- modules-0.7.0/modules/man/amodule.Rd |only modules-0.7.0/modules/man/depend.Rd |only modules-0.7.0/modules/man/module.Rd | 14 - modules-0.7.0/modules/man/modulecoerce.Rd | 7 modules-0.7.0/modules/tests/testModule.R |only modules-0.7.0/modules/tests/testthat.R | 3 modules-0.7.0/modules/tests/testthat/test-amodule.R |only modules-0.7.0/modules/tests/testthat/test-depend.R |only modules-0.7.0/modules/tests/testthat/test-export.R |only modules-0.7.0/modules/tests/testthat/test-expose.R |only modules-0.7.0/modules/tests/testthat/test-import.R |only modules-0.7.0/modules/tests/testthat/test-module.R | 268 -------------------- modules-0.7.0/modules/tests/testthat/test-use.R |only 31 files changed, 199 insertions(+), 371 deletions(-)
More information about GreedyExperimentalDesign at CRAN
Permanent link
Title: Tools for Parsing and Generating XML Within R and S-Plus
Description: Many approaches for both reading and
creating XML (and HTML) documents (including DTDs), both local
and accessible via HTTP or FTP. Also offers access to an
'XPath' "interpreter".
Author: Duncan Temple Lang and the CRAN Team
Maintainer: ORPHANED
Diff between XML versions 3.98-1.11 dated 2018-04-16 and 3.98-1.12 dated 2018-07-15
DESCRIPTION | 12 +++--------- MD5 | 6 +++--- man/xmlEventParse.Rd | 11 +++++++---- src/RUtils.c | 2 +- 4 files changed, 14 insertions(+), 17 deletions(-)
Title: General Network (HTTP/FTP/...) Client Interface for R
Description: A wrapper for 'libcurl' <http://curl.haxx.se/libcurl/>
Provides functions to allow one to compose general HTTP requests
and provides convenient functions to fetch URIs, get & post
forms, etc. and process the results returned by the Web server.
This provides a great deal of control over the HTTP/FTP/...
connection and the form of the request while providing a
higher-level interface than is available just using R socket
connections. Additionally, the underlying implementation is
robust and extensive, supporting FTP/FTPS/TFTP (uploads and
downloads), SSL/HTTPS, telnet, dict, ldap, and also supports
cookies, redirects, authentication, etc.
Author: Duncan Temple Lang and the CRAN team
Maintainer: Duncan Temple Lang <duncan@r-project.org>
Diff between RCurl versions 1.95-4.10 dated 2018-01-04 and 1.95-4.11 dated 2018-07-15
DESCRIPTION | 6 +++--- MD5 | 4 ++-- man/getURL.Rd | 4 +++- 3 files changed, 8 insertions(+), 6 deletions(-)
Title: Make 'ggplot2' Graphics Interactive
Description: Create interactive 'ggplot2' graphics using 'htmlwidgets'.
Author: David Gohel [aut, cre],
Mike Bostock [cph] (d3.js),
Speros Kokenes [cph] (d3-lasso),
Eric Book [ctb] (hline and vline geoms)
Maintainer: David Gohel <david.gohel@ardata.fr>
Diff between ggiraph versions 0.4.3 dated 2018-06-10 and 0.4.4 dated 2018-07-15
DESCRIPTION | 10 +++++----- MD5 | 21 +++++++++++++-------- NAMESPACE | 4 ++++ NEWS | 6 ++++++ R/geom_sf_interactive.R |only R/interactive_path_grob.R |only build/vignette.rds |binary man/drawDetails.interactive_path_grob.Rd |only man/geom_histogram_interactive.Rd | 4 ++-- man/geom_hline_interactive.Rd | 17 +++++++++-------- man/geom_path_interactive.Rd | 10 +++++----- man/geom_sf_interactive.Rd |only man/geom_vline_interactive.Rd | 16 +++++++++------- man/interactive_path_grob.Rd |only 14 files changed, 53 insertions(+), 35 deletions(-)
More information about GreedyExperimentalDesignJARs at CRAN
Permanent link
Title: Streamlined Plot Theme and Plot Annotations for 'ggplot2'
Description: Some helpful extensions and modifications to the 'ggplot2'
package. In particular, this package makes it easy to combine multiple
'ggplot2' plots into one and label them with letters, e.g. A, B, C, etc.,
as is often required for scientific publications. The package also provides
a streamlined and clean theme that is used in the Wilke lab, hence the
package name, which stands for Claus O. Wilke's plot package.
Author: Claus O. Wilke [aut, cre],
RStudio [cph] (Copyright for ggplot2 code copied to cowplot)
Maintainer: Claus O. Wilke <wilke@austin.utexas.edu>
Diff between cowplot versions 0.9.2 dated 2017-12-17 and 0.9.3 dated 2018-07-15
DESCRIPTION | 8 - MD5 | 24 +-- NEWS | 4 R/axis_canvas.R | 3 build/vignette.rds |binary inst/doc/axis_position.html | 142 +++++++++++--------- inst/doc/introduction.html | 266 +++++++++++++++++++------------------- inst/doc/plot_annotations.html | 162 ++++++++++++----------- inst/doc/plot_grid.html | 210 +++++++++++++++--------------- inst/doc/shared_legends.html | 242 ++++++++++++++++++---------------- man/insert_xaxis_grob.Rd | 1 tests/testthat/Rplots.pdf |binary tests/testthat/test_align_plots.R | 29 ++-- 13 files changed, 577 insertions(+), 514 deletions(-)
Title: Quantitative Analysis of Textual Data
Description: A fast, flexible, and comprehensive framework for
quantitative text analysis in R. Provides functionality for corpus management,
creating and manipulating tokens and ngrams, exploring keywords in context,
forming and manipulating sparse matrices
of documents by features and feature co-occurrences, analyzing keywords, computing feature similarities and
distances, applying content dictionaries, applying supervised and unsupervised machine learning,
visually representing text and text analyses, and more.
Author: Kenneth Benoit [cre, aut, cph]
(<https://orcid.org/0000-0002-0797-564X>),
Kohei Watanabe [aut] (<https://orcid.org/0000-0001-6519-5265>),
Haiyan Wang [aut] (<https://orcid.org/0000-0003-4992-4311>),
Paul Nulty [aut] (<https://orcid.org/0000-0002-7214-4666>),
Adam Obeng [aut] (<https://orcid.org/0000-0002-2906-4775>),
Stefan Müller [aut] (<https://orcid.org/0000-0002-6315-4125>),
Akitaka Matsuo [aut] (<https://orcid.org/0000-0002-3323-6330>),
Patrick O. Perry [aut] (<https://orcid.org/0000-0001-7460-127X>),
Jouni Kuha [aut] (<https://orcid.org/0000-0002-1156-8465>),
Benjamin Lauderdale [aut] (0000-0003-3090-0969; wordfish C++ code),
William Lowe [aut] (<https://orcid.org/0000-0002-1549-6163>),
Christian Müller [ctb],
Lori Young [dtc] (Lexicoder Sentiment Dictionary 2015),
Stuart Soroka [dtc] (Lexicoder Sentiment Dictionary 2015),
Ian Fellows [cph] (authored wordcloud C source code (modified)),
European Research Council [fnd] (ERC-2011-StG 283794-QUANTESS)
Maintainer: Kenneth Benoit <kbenoit@lse.ac.uk>
Diff between quanteda versions 1.3.0 dated 2018-06-05 and 1.3.4 dated 2018-07-15
DESCRIPTION | 8 - MD5 | 63 ++++---- NAMESPACE | 2 NEWS.md | 17 ++ R/corpus.R | 75 +++++---- R/corpus_reshape.R | 4 R/corpus_segment.R | 126 +++++++++------- R/dfm.R | 4 R/textmodel_wordscores.R | 9 - R/textplot_network.R | 226 ++++++++++++++++++----------- R/textstat_frequency.R | 1 R/tokens.R | 19 ++ R/tokens_ngrams.R | 2 README.md | 94 +++++++----- build/vignette.rds |binary inst/doc/quickstart.html | 42 ++++- man/as.igraph.Rd |only man/corpus_segment.Rd | 9 - man/predict.textmodel_wordscores.Rd | 7 man/textplot_network.Rd | 36 +++- man/textstat_frequency.Rd | 1 src/recompile.h | 8 - src/tokens_ngrams_mt.cpp | 38 +--- tests/testthat/test-casechanges.R | 7 tests/testthat/test-corpus.R | 64 ++++++++ tests/testthat/test-corpus_reshape.R | 1 tests/testthat/test-corpus_segment.R | 23 ++ tests/testthat/test-fcm.R | 36 ++++ tests/testthat/test-textmodel_NB.R | 2 tests/testthat/test-textmodel_wordscores.R | 23 ++ tests/testthat/test-tokens.R | 37 ++++ tests/testthat/test-tokens_ngrams.R | 54 ++++-- tests/testthat/test-tokens_recompile.R | 9 + 33 files changed, 725 insertions(+), 322 deletions(-)
Title: Visualise Twitter Interactions
Description: Allows building an edge table from data frame of tweets,
also provides function to build nodes and another create a temporal graph.
Author: John Coene [aut, cre]
Maintainer: John Coene <jcoenep@gmail.com>
Diff between graphTweets versions 0.4.1 dated 2018-07-08 and 0.4.2 dated 2018-07-15
DESCRIPTION | 11 +++++------ MD5 | 6 +++--- R/overhaul.R | 4 ++-- man/edges.Rd | 2 +- 4 files changed, 11 insertions(+), 12 deletions(-)
Title: Visualizing Social Science Data with 'ggplot2'
Description: A 'ggplot2' extension for implementing parliament charts and several other useful visualizations.
Author: Frederik Tiedemann [aut, cre]
Maintainer: Frederik Tiedemann <fj.tiedemann@googlemail.com>
Diff between ggpol versions 0.0.2 dated 2018-06-20 and 0.0.3 dated 2018-07-15
DESCRIPTION | 6 - MD5 | 8 - NEWS.md | 6 + R/facet_share.R | 256 +++++++++++++++++++++++++++----------------------------- README.md | 2 5 files changed, 141 insertions(+), 137 deletions(-)
Title: Genetic Data Handling (QC, GRM, LD, PCA) & Linear Mixed Models
Description: Manipulation of genetic data (SNPs). Computation of GRM and dominance matrix, LD, heritability with efficient algorithms for linear mixed model (AIREML) .
Author: Hervé Perdry [cre, aut, cph],
Claire Dandine-Roulland [aut, cph],
Deepak Bandyopadhyay [cph] (C++ gzstream class),
Lutz Kettner [cph] (C++ gzstream class)
Maintainer: Hervé Perdry <herve.perdry@u-psud.fr>
Diff between gaston versions 1.5.3 dated 2018-01-30 and 1.5.4 dated 2018-07-15
gaston-1.5.3/gaston/R/bm_ld_thinner.r |only gaston-1.5.3/gaston/R/getNumThreads.r |only gaston-1.5.3/gaston/R/setThreadOptions.r |only gaston-1.5.3/gaston/inst/include/ai-reml-1k-covar.h |only gaston-1.5.3/gaston/inst/include/ai-reml-1k.h |only gaston-1.5.3/gaston/inst/include/ai-reml-logit-1k-covar.h |only gaston-1.5.3/gaston/inst/include/ai-reml-logit-1k.h |only gaston-1.5.3/gaston/inst/include/ai-reml-logit-nk-covar.h |only gaston-1.5.3/gaston/inst/include/ai-reml-logit-nk.h |only gaston-1.5.3/gaston/inst/include/ai-reml-nk-covar.h |only gaston-1.5.3/gaston/inst/include/ai-reml-nk.h |only gaston-1.5.3/gaston/inst/include/any.h |only gaston-1.5.3/gaston/inst/include/diago2.h |only gaston-1.5.3/gaston/inst/include/diago2_full.h |only gaston-1.5.3/gaston/inst/include/diago2_full_nocovar.h |only gaston-1.5.3/gaston/inst/include/diago2_nocovar.h |only gaston-1.5.3/gaston/inst/include/lmm_diago_min_max_h2.h |only gaston-1.5.3/gaston/inst/include/logit.h |only gaston-1.5.3/gaston/inst/include/m4_kinship_type.h |only gaston-1.5.3/gaston/inst/include/matrix-varia.h |only gaston-1.5.3/gaston/inst/include/matrix4.h |only gaston-1.5.3/gaston/inst/include/optimize_2.h |only gaston-1.5.3/gaston/inst/include/snp_hash.h |only gaston-1.5.3/gaston/man/setThreadOptions.Rd |only gaston-1.5.3/gaston/src/PoorMansParallel.cpp |only gaston-1.5.3/gaston/src/PoorMansParallel.h |only gaston-1.5.4/gaston/DESCRIPTION | 12 - gaston-1.5.4/gaston/MD5 | 108 +++++--------- gaston-1.5.4/gaston/NAMESPACE | 7 gaston-1.5.4/gaston/NEWS | 4 gaston-1.5.4/gaston/R/gwas.r | 92 +++++++---- gaston-1.5.4/gaston/R/ld_thin.r |only gaston-1.5.4/gaston/R/logistic_mm_aireml.r | 7 gaston-1.5.4/gaston/R/pvalues.thinning.r |only gaston-1.5.4/gaston/R/set.dist.r |only gaston-1.5.4/gaston/R/snp_match.r | 11 + gaston-1.5.4/gaston/R/snp_rm_duplicates.r |only gaston-1.5.4/gaston/R/zzz.r | 12 + gaston-1.5.4/gaston/TODO | 8 - gaston-1.5.4/gaston/data/datalist | 1 gaston-1.5.4/gaston/data/dupli.rda |only gaston-1.5.4/gaston/inst/doc/gaston.R | 2 gaston-1.5.4/gaston/inst/doc/gaston.Rnw | 2 gaston-1.5.4/gaston/inst/doc/gaston.pdf |binary gaston-1.5.4/gaston/inst/include/gaston/logit.h | 30 ++- gaston-1.5.4/gaston/inst/include/gaston/snp_hash.h | 17 ++ gaston-1.5.4/gaston/man/DM.Rd | 6 gaston-1.5.4/gaston/man/GRM.Rd | 7 gaston-1.5.4/gaston/man/LD.thin.Rd | 9 - gaston-1.5.4/gaston/man/SNP.match.Rd | 21 +- gaston-1.5.4/gaston/man/SNP.rm.duplicates.Rd |only gaston-1.5.4/gaston/man/association.test.Rd | 17 -- gaston-1.5.4/gaston/man/bed.loadings.Rd | 6 gaston-1.5.4/gaston/man/dupli.Rd |only gaston-1.5.4/gaston/man/lik.contour.Rd | 8 - gaston-1.5.4/gaston/man/lmm.aireml.Rd | 7 gaston-1.5.4/gaston/man/lmm.diago.Rd | 7 gaston-1.5.4/gaston/man/lmm.diago.likelihood.Rd | 7 gaston-1.5.4/gaston/man/lmm.restricted.likelihood.Rd | 7 gaston-1.5.4/gaston/man/logistic.mm.aireml.Rd | 7 gaston-1.5.4/gaston/man/read.bed.matrix.Rd | 14 + gaston-1.5.4/gaston/man/reshape.GRM.Rd | 7 gaston-1.5.4/gaston/man/score.fixed.Rd | 7 gaston-1.5.4/gaston/man/score.variance.Rd | 7 gaston-1.5.4/gaston/man/set.dist.Rd |only gaston-1.5.4/gaston/src/Parallel.h | 10 - gaston-1.5.4/gaston/src/alleles_duplicated.cpp |only gaston-1.5.4/gaston/src/duplicated_remove.cpp |only gaston-1.5.4/gaston/src/gaston_init.c | 16 +- gaston-1.5.4/gaston/src/gwas_lmm_diago_wald.cpp | 2 gaston-1.5.4/gaston/src/logit.h | 30 ++- gaston-1.5.4/gaston/src/snp_hash.h | 17 ++ gaston-1.5.4/gaston/vignettes/gaston.Rnw | 2 73 files changed, 271 insertions(+), 263 deletions(-)
Title: High Precise Measurement of R Expressions Execution Time
Description: Provides infrastructure to accurately measure and compare
the execution time of R expressions.
Author: Artem Klevtsov [aut, cre],
Anton Antonov [ctb],
Philipp Upravitelev [ctb]
Maintainer: Artem Klevtsov <a.a.klevtsov@gmail.com>
Diff between benchr versions 0.2.0 dated 2017-04-03 and 0.2.2 dated 2018-07-15
benchr-0.2.0/benchr/src/init.c |only benchr-0.2.2/benchr/DESCRIPTION | 8 +++--- benchr-0.2.2/benchr/MD5 | 15 +++++------- benchr-0.2.2/benchr/NEWS.md | 11 ++++++++- benchr-0.2.2/benchr/R/RcppExports.R | 8 +++--- benchr-0.2.2/benchr/README.md | 29 +++++++++++++----------- benchr-0.2.2/benchr/src/RcppExports.cpp | 21 ++++++++++++++--- benchr-0.2.2/benchr/tests/testthat/test-plot.R | 16 ++++++------- benchr-0.2.2/benchr/tests/testthat/test-timer.R | 6 ---- 9 files changed, 66 insertions(+), 48 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-11-09 1.5
2016-01-23 1.3
2015-12-15 1.2
2015-10-02 1.1
2015-08-18 1.0
Title: Query 'HaploReg', 'RegulomeDB', 'LDlink'
Description: A set of utilities for querying
'HaploReg' <http://archive.broadinstitute.org/mammals/haploreg/haploreg.php>,
'RegulomeDB' <http://www.regulomedb.org>, and LDlink <https://analysistools.nci.nih.gov/LDlink>
web-based tools. The package connects to
'HaploReg', 'RegulomeDB' and 'LDlink', searches and downloads results, without
opening web pages, directly from R environment.
Results are stored in a data frame that can be directly used in various
kinds of downstream analyses.
Author: Ilya Y. Zhbannikov [aut, cre],
Konstantin G. Arbeev [aut],
Anatoliy I. Yashin [aut]
Maintainer: Ilya Y. Zhbannikov <ilya.zhbannikov@duke.edu>
Diff between haploR versions 2.0.3 dated 2018-07-01 and 2.0.4 dated 2018-07-15
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- NAMESPACE | 2 ++ R/LDlink.R | 4 +++- R/general.R | 1 + R/settings.R | 6 +++--- inst/NEWS | 8 ++------ inst/doc/haplor-vignette.html | 14 +++++++------- man/haploR-makeStylishLDmatrix.Rd | 2 ++ 9 files changed, 32 insertions(+), 29 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-07-13 0.9.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-03-02 0.1.1
2017-11-07 0.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-08-31 2.1-1
2015-05-19 2.1-0
2014-10-30 2.0-11
2014-09-27 2.0-9
2014-07-23 2.0-8
2014-01-21 2.0-4
2014-01-13 2.0-2
2014-01-13 2.0-3
2013-05-10 1.2-8
2013-03-11 1.2-6
2013-03-04 1.2-5
2011-07-04 1.2-2
2011-06-24 1.2-1
2010-06-08 1.1.1
2010-05-25 1.1
2010-03-08 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-07-13 0.3.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-10-02 1.1-0
2013-04-15 1.0-11
2013-03-08 1.0-9
2012-11-09 1.0-8
2012-06-06 1.0-7
2010-09-02 1.0-6
2010-09-01 1.0-5
2010-02-08 1.0-4
2010-01-21 1.0-3
2010-01-11 1.0-1
2010-01-06 1.0-0
Title: Create Blogs and Websites with R Markdown
Description: Write blog posts and web pages in R Markdown. This package supports
the static site generator 'Hugo' (<https://gohugo.io>) best, and it also
supports 'Jekyll' (<http://jekyllrb.com>) and 'Hexo' (<https://hexo.io>).
Author: Yihui Xie [aut, cre] (<https://orcid.org/0000-0003-0645-5666>),
Beilei Bian [ctb],
Forest Fang [ctb],
Garrick Aden-Buie [ctb],
Hiroaki Yutani [ctb],
Ian Lyttle [ctb],
JJ Allaire [ctb],
Kevin Ushey [ctb],
Leonardo Collado-Torres [ctb],
Xianying Tan [ctb],
RStudio Inc [cph]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between blogdown versions 0.7 dated 2018-07-07 and 0.8 dated 2018-07-15
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 6 ++++++ R/render.R | 2 +- README.md | 4 ++-- 5 files changed, 16 insertions(+), 10 deletions(-)
Title: Tufte's Styles for R Markdown Documents
Description: Provides R Markdown output formats to use Tufte styles for PDF and HTML output.
Author: Yihui Xie [aut, cre] (<https://orcid.org/0000-0003-0645-5666>),
JJ Allaire [aut],
Andrzej Oles [ctb],
Dave Liepmann [ctb] (Tufte CSS in
inst/rmarkdown/templates/tufte_html/resources),
RStudio, Inc. [cph]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between tufte versions 0.3 dated 2018-01-24 and 0.4 dated 2018-07-15
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ NEWS.md | 8 ++++++++ R/handout.R | 3 ++- R/html.R | 3 ++- README.md | 4 ++-- inst/rmarkdown/templates/tufte_html/skeleton/skeleton.Rmd | 2 +- 7 files changed, 25 insertions(+), 15 deletions(-)
Title: Thematic Maps
Description: Thematic maps are geographical maps in which spatial data distributions are visualized. This package offers a flexible, layer-based, and easy to use approach to create thematic maps, such as choropleths and bubble maps.
Author: Martijn Tennekes [aut, cre],
Joel Gombin [ctb],
Sebastian Jeworutzki [ctb],
Kent Russell [ctb],
Richard Zijdeman [ctb],
John Clouse [ctb],
Robin Lovelace [ctb],
Jakub Nowosad [ctb],
Jannes Muenchow [ctb]
Maintainer: Martijn Tennekes <mtennekes@gmail.com>
Diff between tmap versions 1.11-2 dated 2018-04-10 and 2.0 dated 2018-07-15
tmap-1.11-2/tmap/R/animation_tmap.R |only tmap-1.11-2/tmap/R/get_sp_coordinates.R |only tmap-1.11-2/tmap/R/one_line_per_lines.R |only tmap-1.11-2/tmap/R/process_other_aes.R |only tmap-1.11-2/tmap/R/save_tmap.R |only tmap-1.11-2/tmap/R/style_catalogue.R |only tmap-1.11-2/tmap/build/check_for_non_ASCII.R |only tmap-1.11-2/tmap/build/create_NLD_dasy.R |only tmap-1.11-2/tmap/build/create_europe_world.R |only tmap-1.11-2/tmap/build/roxygen.r |only tmap-1.11-2/tmap/data/Europe.rda |only tmap-1.11-2/tmap/inst/doc/tmap-modes.R |only tmap-1.11-2/tmap/inst/doc/tmap-modes.Rmd |only tmap-1.11-2/tmap/inst/doc/tmap-modes.html |only tmap-1.11-2/tmap/inst/doc/tmap-nutshell.R |only tmap-1.11-2/tmap/inst/doc/tmap-nutshell.Rmd |only tmap-1.11-2/tmap/inst/doc/tmap-nutshell.html |only tmap-1.11-2/tmap/man/animation_tmap.Rd |only tmap-1.11-2/tmap/man/last_map.Rd |only tmap-1.11-2/tmap/man/save_tmap.Rd |only tmap-1.11-2/tmap/man/style_catalogue.Rd |only tmap-1.11-2/tmap/vignettes/images/view_mode.png |only tmap-1.11-2/tmap/vignettes/tmap-modes.Rmd |only tmap-1.11-2/tmap/vignettes/tmap-nutshell.Rmd |only tmap-2.0/tmap/DESCRIPTION | 39 - tmap-2.0/tmap/MD5 | 263 +++++---- tmap-2.0/tmap/NAMESPACE | 28 - tmap-2.0/tmap/NEWS | 15 tmap-2.0/tmap/R/add_data_to_gps.R | 2 tmap-2.0/tmap/R/cat2pal.R | 31 - tmap-2.0/tmap/R/cat2shape.R | 20 tmap-2.0/tmap/R/deprecated.R |only tmap-2.0/tmap/R/facet_functions.R | 4 tmap-2.0/tmap/R/get_sf_coordinates.R |only tmap-2.0/tmap/R/grid_shp.R | 113 ++-- tmap-2.0/tmap/R/gridplot.R | 11 tmap-2.0/tmap/R/legend_hist.R | 2 tmap-2.0/tmap/R/legend_prepare.R | 16 tmap-2.0/tmap/R/lines_midpoints.R | 28 - tmap-2.0/tmap/R/meta_plot.R | 17 tmap-2.0/tmap/R/meta_plot_items.R | 56 +- tmap-2.0/tmap/R/num2pal.R | 169 +++--- tmap-2.0/tmap/R/num2shape.R | 3 tmap-2.0/tmap/R/onLoad.R | 14 tmap-2.0/tmap/R/order_x.R |only tmap-2.0/tmap/R/pkg.R | 129 ++-- tmap-2.0/tmap/R/plot_all.R | 24 tmap-2.0/tmap/R/plot_map.R | 199 +++---- tmap-2.0/tmap/R/plot_misc_functions.R | 420 +++++++++------ tmap-2.0/tmap/R/prearrange_element_order.R |only tmap-2.0/tmap/R/preprocess_facet_layout.R | 4 tmap-2.0/tmap/R/preprocess_gt.R | 200 ++++--- tmap-2.0/tmap/R/preprocess_shapes.R | 359 +++++++----- tmap-2.0/tmap/R/print_tmap.R | 237 ++++++-- tmap-2.0/tmap/R/process_aes.R |only tmap-2.0/tmap/R/process_color.R | 2 tmap-2.0/tmap/R/process_color_aes.R | 173 ++++-- tmap-2.0/tmap/R/process_data.R | 127 +++- tmap-2.0/tmap/R/process_fill.R | 121 +--- tmap-2.0/tmap/R/process_gps.R | 106 +++ tmap-2.0/tmap/R/process_layers.R | 229 +++++++- tmap-2.0/tmap/R/process_lines.R | 182 ------ tmap-2.0/tmap/R/process_lwd_aes.R |only tmap-2.0/tmap/R/process_meta.R | 156 +++-- tmap-2.0/tmap/R/process_raster.R | 124 +--- tmap-2.0/tmap/R/process_shape_aes.R |only tmap-2.0/tmap/R/process_shapes.R | 132 +++- tmap-2.0/tmap/R/process_size_aes.R |only tmap-2.0/tmap/R/process_symbols.R | 361 ++---------- tmap-2.0/tmap/R/process_text.R | 310 +---------- tmap-2.0/tmap/R/process_text_just.R |only tmap-2.0/tmap/R/process_textsize_aes.R |only tmap-2.0/tmap/R/process_tiles.R |only tmap-2.0/tmap/R/process_tm.R | 77 +- tmap-2.0/tmap/R/process_varnames.R | 2 tmap-2.0/tmap/R/qtm.R | 196 +++---- tmap-2.0/tmap/R/sf_functions.R |only tmap-2.0/tmap/R/split_g.R | 4 tmap-2.0/tmap/R/split_tm.R | 2 tmap-2.0/tmap/R/symbol_functions.R | 8 tmap-2.0/tmap/R/text_functions.R | 2 tmap-2.0/tmap/R/tm_layers.R | 232 ++++++-- tmap-2.0/tmap/R/tm_layout.R | 452 ++++------------ tmap-2.0/tmap/R/tm_misc_elements.R | 65 +- tmap-2.0/tmap/R/tm_shape.R | 42 - tmap-2.0/tmap/R/tm_view.R | 58 +- tmap-2.0/tmap/R/tmap_animation.R |only tmap-2.0/tmap/R/tmap_arrange.R | 92 ++- tmap-2.0/tmap/R/tmap_format.R |only tmap-2.0/tmap/R/tmap_icons.R | 2 tmap-2.0/tmap/R/tmap_mode.R | 87 --- tmap-2.0/tmap/R/tmap_options.R |only tmap-2.0/tmap/R/tmap_save.R |only tmap-2.0/tmap/R/tmap_style.R |only tmap-2.0/tmap/R/tmap_style_catalogue.R |only tmap-2.0/tmap/R/tmap_tip.R |only tmap-2.0/tmap/R/view_tmap.R | 532 ++++++++++++++----- tmap-2.0/tmap/R/xxx_raster.R | 251 +++----- tmap-2.0/tmap/R/xxx_scales.R | 34 + tmap-2.0/tmap/build/create_NLD.R | 14 tmap-2.0/tmap/build/create_land.R | 6 tmap-2.0/tmap/build/create_metro.R | 98 --- tmap-2.0/tmap/build/create_rivers.R | 27 tmap-2.0/tmap/build/create_world.R |only tmap-2.0/tmap/build/vignette.rds |binary tmap-2.0/tmap/data/NLD_muni.rda |binary tmap-2.0/tmap/data/NLD_prov.rda |binary tmap-2.0/tmap/data/World.rda |binary tmap-2.0/tmap/data/datalist | 1 tmap-2.0/tmap/data/land.rda |binary tmap-2.0/tmap/data/metro.rda |binary tmap-2.0/tmap/data/rivers.rda |binary tmap-2.0/tmap/inst/doc/tmap-JSS-code.R |only tmap-2.0/tmap/inst/doc/tmap-JSS-code.Rmd |only tmap-2.0/tmap/inst/doc/tmap-JSS-code.html |only tmap-2.0/tmap/inst/doc/tmap-changes-v2.R |only tmap-2.0/tmap/inst/doc/tmap-changes-v2.Rmd |only tmap-2.0/tmap/inst/doc/tmap-changes-v2.html |only tmap-2.0/tmap/inst/doc/tmap-getstarted.R |only tmap-2.0/tmap/inst/doc/tmap-getstarted.Rmd |only tmap-2.0/tmap/inst/doc/tmap-getstarted.html |only tmap-2.0/tmap/inst/img/airplane.png |only tmap-2.0/tmap/inst/img/city.png |only tmap-2.0/tmap/inst/tips.txt |only tmap-2.0/tmap/man/Shapes.Rd | 15 tmap-2.0/tmap/man/deprecated_functions.Rd |only tmap-2.0/tmap/man/land.Rd | 2 tmap-2.0/tmap/man/metro.Rd | 4 tmap-2.0/tmap/man/plus-.tmap.Rd | 2 tmap-2.0/tmap/man/print.tmap.Rd | 2 tmap-2.0/tmap/man/qtm.Rd | 84 +-- tmap-2.0/tmap/man/rivers.Rd | 2 tmap-2.0/tmap/man/tm_compass.Rd | 2 tmap-2.0/tmap/man/tm_credits.Rd | 4 tmap-2.0/tmap/man/tm_facets.Rd | 52 - tmap-2.0/tmap/man/tm_iso.Rd | 4 tmap-2.0/tmap/man/tm_layout.Rd | 227 ++------ tmap-2.0/tmap/man/tm_lines.Rd | 31 - tmap-2.0/tmap/man/tm_logo.Rd | 6 tmap-2.0/tmap/man/tm_minimap.Rd |only tmap-2.0/tmap/man/tm_polygons.Rd | 65 +- tmap-2.0/tmap/man/tm_raster.Rd | 44 - tmap-2.0/tmap/man/tm_scale_bar.Rd | 7 tmap-2.0/tmap/man/tm_sf.Rd |only tmap-2.0/tmap/man/tm_shape.Rd | 44 - tmap-2.0/tmap/man/tm_symbols.Rd | 75 +- tmap-2.0/tmap/man/tm_text.Rd | 75 +- tmap-2.0/tmap/man/tm_tiles.Rd |only tmap-2.0/tmap/man/tm_view.Rd | 34 - tmap-2.0/tmap/man/tmap-element.Rd | 64 +- tmap-2.0/tmap/man/tmap-package.Rd | 39 - tmap-2.0/tmap/man/tmap_animation.Rd |only tmap-2.0/tmap/man/tmap_arrange.Rd | 14 tmap-2.0/tmap/man/tmap_format.Rd |only tmap-2.0/tmap/man/tmap_last.Rd |only tmap-2.0/tmap/man/tmap_leaflet.Rd | 4 tmap-2.0/tmap/man/tmap_mode.Rd | 8 tmap-2.0/tmap/man/tmap_options.Rd | 152 ++++- tmap-2.0/tmap/man/tmap_save.Rd |only tmap-2.0/tmap/man/tmap_style.Rd | 19 tmap-2.0/tmap/man/tmap_style_catalogue.Rd |only tmap-2.0/tmap/man/tmap_tip.Rd |only tmap-2.0/tmap/vignettes/images/tmap_facets.jpg |only tmap-2.0/tmap/vignettes/images/tmap_filter.jpg |only tmap-2.0/tmap/vignettes/images/tmap_tiles_labels.jpg |only tmap-2.0/tmap/vignettes/images/tmap_view.jpg |only tmap-2.0/tmap/vignettes/tmap-JSS-code.Rmd |only tmap-2.0/tmap/vignettes/tmap-changes-v2.Rmd |only tmap-2.0/tmap/vignettes/tmap-getstarted.Rmd |only 169 files changed, 4221 insertions(+), 3570 deletions(-)
Title: Microplots (Sparklines) in 'LaTeX', 'Word', 'HTML', 'Excel'
Description: The microplot function writes a set of R graphics files to be used as
microplots (sparklines) in tables in either 'LaTeX', 'HTML', 'Word',
or 'Excel' files. For 'LaTeX', we provide methods for the
Hmisc::latex() generic function to construct 'latex' tabular
environments which include the graphs. These can be used directly
with the operating system 'pdflatex' or 'latex' command, or by using
one of 'Sweave', 'knitr', 'rmarkdown', or 'Emacs org-mode' as an
intermediary. For 'MS Word', the msWord() function uses the
'flextable' package to construct 'Word' tables which include the
graphs. There are several distinct approaches for constructing HTML
files. The simplest is to use the msWord() function with argument
filetype="html". Alternatively, use either 'Emacs org-mode' or the
htmlTable::htmlTable() function to construct an 'HTML' file
containing tables which include the graphs. See the documentation
for our as.htmlimg() function. For 'Excel' use on 'Windows', the
file examples/irisExcel.xls includes 'VBA' code which brings the
individual panels into individual cells in the spreadsheet.
Examples in the examples and demo subdirectories are shown with
'lattice' graphics, 'ggplot2' graphics, and 'base' graphics.
Examples for 'LaTeX' include 'Sweave' (both 'LaTeX'-style and
'Noweb'-style), 'knitr', 'emacs org-mode', and 'rmarkdown' input
files and their 'pdf' output files. Examples for 'HTML' include
'org-mode' and 'Rmd' input files and their webarchive 'HTML' output
files. In addition, the as.orgtable() function can display a
data.frame in an 'org-mode' document. The examples for 'MS Word'
(with either filetype="docx" or filetype="html") work with all
operating systems. The package does not require the installation of
'LaTeX' or 'MS Word' to be able to write '.tex' or '.docx' files.
Author: Richard M. Heiberger, with contributions from Karen Byron and Nooreen Dabbish.
Maintainer: Richard M. Heiberger <rmh@temple.edu>
Diff between microplot versions 1.0-39 dated 2018-06-05 and 1.0-40 dated 2018-07-15
DESCRIPTION | 12 - MD5 | 16 - NAMESPACE | 6 NEWS | 29 ++ R/msWord.microplotMatrix.R | 497 +++++++++++++++++++++++++-------------------- build/partial.rdb |binary demo/iris.r | 4 inst/doc/rmhPoster.pdf |binary man/latex.AEdotplot.Rd | 2 9 files changed, 330 insertions(+), 236 deletions(-)
Title: Sensitivity Analysis Tools for LSD
Description: Tools for sensitivity analysis of LSD simulation models. Reads object-oriented data produced by LSD simulation models and performs screening and global sensitivity analysis (Sobol decomposition method, Saltelli et al. (2008) ISBN:9780470725177). A Kriging or polynomial meta-model (Kleijnen (2009) <doi:10.1016/j.ejor.2007.10.013>) is estimated using the simulation data to provide the data required by the Sobol decomposition. LSD (Laboratory for Simulation Development) is free software developed by Marco Valente (documentation and downloads available at <http://labsimdev.org>).
Author: Marcelo C. Pereira
Maintainer: Marcelo C. Pereira <marcelocpereira@uol.com.br>
Diff between LSDsensitivity versions 0.2.0 dated 2018-05-14 and 0.3.0 dated 2018-07-15
DESCRIPTION | 14 +- MD5 | 15 +- NAMESPACE | 2 R/LSDsensitivity.R | 281 ++++++++++++++++++++++++++++++++--------- build/partial.rdb |binary man/ergod.test.lsd.rd | 11 - man/read.doe.lsd.Rd | 5 man/sobol.decomposition.lsd.Rd | 6 man/symmet.test.lsd.rd |only 9 files changed, 251 insertions(+), 83 deletions(-)
More information about LSDsensitivity at CRAN
Permanent link
Title: Package for Environmental Statistics, Including US EPA Guidance
Description: Graphical and statistical analyses of environmental data, with
focus on analyzing chemical concentrations and physical parameters, usually in
the context of mandated environmental monitoring. Major environmental
statistical methods found in the literature and regulatory guidance documents,
with extensive help that explains what these methods do, how to use them,
and where to find them in the literature. Numerous built-in data sets from
regulatory guidance documents and environmental statistics literature. Includes
scripts reproducing analyses presented in the book "EnvStats: An R Package for
Environmental Statistics" (Millard, 2013, Springer, ISBN 978-1-4614-8455-4,
<http://www.springer.com/book/9781461484554>).
Author: Steven P. Millard <EnvStats@ProbStatInfo.com>
Maintainer: Alexander Kowarik <alexander.kowarik@statistik.gv.at>
Diff between EnvStats versions 2.3.0 dated 2017-10-09 and 2.3.1 dated 2018-07-15
DESCRIPTION | 10 MD5 | 18 R/fix0101.R | 153 ++-- R/fix0201.obs.R | 120 +-- man/Olympic.NH4.df.Rd | 100 +- man/Skagit.NH3_N.df.Rd | 88 +- man/geom_stripchart.Rd | 1191 +++++++++++++++++------------------ man/plotPredIntNormTestPowerCurve.Rd | 372 +++++----- man/tolIntLnormCensored.Rd | 629 +++++++++--------- man/tolIntNormCensored.Rd | 637 +++++++++--------- 10 files changed, 1657 insertions(+), 1661 deletions(-)