Title: Tools for ABC Analyses
Description: Tools for approximate Bayesian computation including summary statistic selection and assessing coverage.
Author: Matt Nunes [aut, cre],
Dennis Prangle [aut],
Guilhereme Rodrigues [ctb]
Maintainer: Matt Nunes <nunesrpackages@gmail.com>
Diff between abctools versions 1.1.1 dated 2017-04-20 and 1.1.3 dated 2018-07-17
DESCRIPTION | 13 +++++++------ MD5 | 4 ++-- man/abctools-package.Rd | 4 ++-- 3 files changed, 11 insertions(+), 10 deletions(-)
Title: Analysis of R Code for Reproducible Research and Code
Comprehension
Description: Tools for analyzing R expressions
or blocks of code and determining the dependencies between them.
It focuses on R scripts, but can be used on the bodies of functions.
There are many facilities including the ability to summarize or get a high-level
view of code, determining dependencies between variables, code improvement
suggestions.
Author: Duncan Temple Lang, Roger Peng, Deborah Nolan, Gabriel Becker
Maintainer: Gabriel Becker <becker.gabriel@gene.com>
Diff between CodeDepends versions 0.6.0 dated 2018-06-22 and 0.6.5 dated 2018-07-17
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- R/codeDepends.R | 23 ++++++++++++++--------- R/functionHandlers.R | 47 +++++++++++++++++++++++++++++++++++++++-------- R/librarySymbols.R | 18 ++++++++++++++++-- build/vignette.rds |binary inst/doc/intro.html | 16 ++++++++-------- man/handlers.Rd | 1 + 8 files changed, 88 insertions(+), 37 deletions(-)
Title: Provides Access to Git Repositories
Description: Interface to the 'libgit2' library, which is a pure C
implementation of the 'Git' core methods. Provides access to 'Git'
repositories to extract data and running some basic 'Git'
commands.
Author: See AUTHORS file.
Maintainer: Stefan Widgren <stefan.widgren@gmail.com>
Diff between git2r versions 0.22.1 dated 2018-07-10 and 0.23.0 dated 2018-07-17
DESCRIPTION | 15 MD5 | 25 NEWS | 21 configure | 1907 +++++++++++++++++++++------- configure.ac | 144 +- src/Makevars_libgit2.in | 2 src/git2r_cred.c | 418 +++--- src/libgit2/include/git2/version.h | 4 src/libgit2/src/delta.c | 56 src/libgit2/src/hash/hash_collisiondetect.h |only src/libgit2/src/hash/sha1dc |only src/libgit2/src/refs.c | 8 src/libgit2/src/util.c | 4 13 files changed, 1886 insertions(+), 718 deletions(-)
Title: Parsing and Evaluation Tools that Provide More Details than the
Default
Description: Parsing and evaluation tools that make it easy to recreate the
command line behaviour of R.
Author: Hadley Wickham [aut],
Yihui Xie [aut, cre] (<https://orcid.org/0000-0003-0645-5666>),
Michael Lawrence [ctb],
Thomas Kluyver [ctb],
Jeroen Ooms [ctb],
Barret Schloerke [ctb],
Adam Ryczkowski [ctb],
Hiroaki Yutani [ctb]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between evaluate versions 0.10.1 dated 2017-06-24 and 0.11 dated 2018-07-17
DESCRIPTION | 23 +++++++++++++---------- LICENSE | 2 +- MD5 | 14 +++++++------- NEWS | 8 ++++++++ R/eval.r | 3 +++ R/parse.r | 6 ++---- R/traceback.r | 4 ++++ tests/testthat/test-evaluate.r | 14 ++++++++++++++ 8 files changed, 52 insertions(+), 22 deletions(-)
Title: Tools for Single Cell Genomics
Description: A toolkit for quality control, analysis, and exploration of single cell RNA sequencing data. 'Seurat' aims to enable users to identify and interpret sources of heterogeneity from single cell transcriptomic measurements, and to integrate diverse types of single cell data. See Satija R, Farrell J, Gennert D, et al (2015) <doi:10.1038/nbt.3192>, Macosko E, Basu A, Satija R, et al (2015) <doi:10.1016/j.cell.2015.05.002>, and Butler A and Satija R (2017) <doi:10.1101/164889> for more details.
Author: Rahul Satija [aut] (<https://orcid.org/0000-0001-9448-8833>),
Andrew Butler [aut] (<https://orcid.org/0000-0003-3608-0463>),
Paul Hoffman [aut, cre] (<https://orcid.org/0000-0002-7693-8957>),
Jeff Farrell [ctb],
Shiwei Zheng [ctb] (<https://orcid.org/0000-0001-6682-6743>),
Christoph Hafemeister [ctb] (<https://orcid.org/0000-0001-6365-8254>),
Patrick Roelli [ctb]
Maintainer: Paul Hoffman <seuratpackage@gmail.com>
Diff between Seurat versions 2.3.3 dated 2018-07-02 and 2.3.4 dated 2018-07-17
Seurat-2.3.3/Seurat/inst/java |only Seurat-2.3.3/Seurat/java |only Seurat-2.3.3/Seurat/tests/testthat/Rplots.pdf |only Seurat-2.3.4/Seurat/DESCRIPTION | 25 +- Seurat-2.3.4/Seurat/MD5 | 69 ++++---- Seurat-2.3.4/Seurat/NAMESPACE | 9 - Seurat-2.3.4/Seurat/NEWS.md | 11 + Seurat-2.3.4/Seurat/R/RcppExports.R | 4 Seurat-2.3.4/Seurat/R/cluster_determination.R | 4 Seurat-2.3.4/Seurat/R/cluster_determination_internal.R | 63 ------- Seurat-2.3.4/Seurat/R/conversion.R | 2 Seurat-2.3.4/Seurat/R/dimensional_reduction.R | 85 +++++----- Seurat-2.3.4/Seurat/R/dimensional_reduction_utilities.R | 2 Seurat-2.3.4/Seurat/R/interaction.R | 27 +++ Seurat-2.3.4/Seurat/R/not_used_yet.R |only Seurat-2.3.4/Seurat/R/plotting.R | 2 Seurat-2.3.4/Seurat/R/plotting_utilities.R | 4 Seurat-2.3.4/Seurat/R/printing_utilities.R | 4 Seurat-2.3.4/Seurat/R/scoring.R | 6 Seurat-2.3.4/Seurat/man/BatchGene.Rd |only Seurat-2.3.4/Seurat/man/DMEmbed.Rd | 2 Seurat-2.3.4/Seurat/man/DMPlot.Rd | 2 Seurat-2.3.4/Seurat/man/FindClusters.Rd | 4 Seurat-2.3.4/Seurat/man/FindGeneTerms.Rd |only Seurat-2.3.4/Seurat/man/GetIdent.Rd |only Seurat-2.3.4/Seurat/man/MultiModal_CCA.Rd |only Seurat-2.3.4/Seurat/man/MultiModal_CIA.Rd |only Seurat-2.3.4/Seurat/man/PrintCalcVarExpRatioParams.Rd | 2 Seurat-2.3.4/Seurat/man/PrintDMParams.Rd | 2 Seurat-2.3.4/Seurat/man/RunDiffusion.Rd | 20 +- Seurat-2.3.4/Seurat/man/RunMultiCCA.Rd | 2 Seurat-2.3.4/Seurat/man/RunPHATE.Rd | 50 ++--- Seurat-2.3.4/Seurat/man/RunTSNE.Rd | 2 Seurat-2.3.4/Seurat/src/ModularityOptimizer.cpp |only Seurat-2.3.4/Seurat/src/ModularityOptimizer.h |only Seurat-2.3.4/Seurat/src/RModularityOptimizer.cpp |only Seurat-2.3.4/Seurat/src/RcppExports.cpp | 24 ++ Seurat-2.3.4/Seurat/src/data_manipulation.cpp | 9 - Seurat-2.3.4/Seurat/src/data_manipulation.h | 2 Seurat-2.3.4/Seurat/tests/testthat/test_modularity_optimizer.R |only 40 files changed, 251 insertions(+), 187 deletions(-)
Title: Regularized Random Forest
Description: Feature Selection with Regularized Random Forest. This
package is based on the 'randomForest' package by Andy Liaw.
The key difference is the RRF() function that builds a
regularized random forest.
Author: Fortran original by Leo Breiman and Adele Cutler, R port by
Andy Liaw and Matthew Wiener, Regularized random forest for classification by
Houtao Deng. Regularized random forest for regression by Xin Guan.
Maintainer: Houtao Deng <softwaredeng@gmail.com>
Diff between RRF versions 1.8 dated 2018-06-30 and 1.9 dated 2018-07-17
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- NEWS | 6 +++--- 3 files changed, 9 insertions(+), 9 deletions(-)
Title: A Collection of Small Text Corpora of Interesting Data
Description: A collection of small text corpora of interesting data.
It contains all data sets from 'dariusk/corpora'. Some examples:
names of animals: birds, dinosaurs, dogs; foods: beer categories,
pizza toppings; geography: English towns, rivers, oceans;
humans: authors, US presidents, occupations; science: elements,
planets; words: adjectives, verbs, proverbs, US president quotes.
Author: Darius Kazemi, Cole Willsea, Serin Delaunay, Karl Swedberg,
Matthew Rothenberg, Greg Kennedy, Nathaniel Mitchell, Javier
Arce, Mark Sample, Parker Higgins, Allison Parrish, Matthew
Hokanson, Aaron Marriner, Casey Kolderup, Michael Paulukonis,
Neil Freeman, nathan lachenmyer, Brett O'Connor, Christian Leon
Christensen, David Edgar, Greg Borenstein, Jeffery Bennett, Kris
Baillargeon, M. Nowak, Peter Organisciak, Rachel White, Tod
Robbins, John Wiseman, Alex Fox, Alice Maz, Becca Ricks, Chris
Spurgeon, Colin Mitchell, David Whitten, Mary Dickson Diaz,
Michael R. Bernstein, Mike Watson, Patrick Rodriguez, Rebecca
Sherman, Rebecca Turner, Ross Barclay, Ross Binden, Ryan
Freebern, Will Hankinson, Stefan Bohacek, Justin Alford, Brian
Detweiler, Ed Lea, John Ohno, Daniel McNally, Sean May, Tariq
Ali, shubham kumar, adam malantonio, Alan Hussey, Amanda
Visconti, Andreas Fuchs, Andy Craze, Andy Dayton, Ashur Cabrera,
Austin Davis-Richardson, Ben Williams, Brian Chitester, Brian
Gawalt, Brian Jones, Casey Olson, Chad Nelson, Cliff Rodgers,
Cristian Rivas Gómez, Dan Sumption, Edward Loveall, Elijah Cobb,
Garrett Miller, Grant Williamson, Ian McCowan, Jacob Fauber, Jay
Mahabal, Jeoff Villanueva, Jesse Spielman, Joe Mahoney, Jordan
Killpack, Josh Leong, Kay Belardinelli, K Adam White, Kristian
Wichmann, Kyle McDonald, Liam Cooke, Marcos Wright-Kuhns, Mark
Wunsch, Matt Beiswenger, Matthew McVickar, Matthew Molnar, Max
Bittker, Michael Dewberry, Nathan Black, Noah Kantrowitz, Noah
Swartz, Ranjit Bhatnagar, Ray Martinez, Rob Huzzey, Ryan Giglio,
Sabareesh Iyer, Sam Raker, Tia Esguerra, Utsav Chadha, Vincent
Bruijn, Will Thompson, Zac Moody, aarón montoya-moraga, Alex
Miller, Delacannon, Scott Lieber, Pace Ricciardelli, Ruta
Kruliauskaite, Scott Grant
Maintainer: Gábor Csárdi <csardi.gabor@gmail.com>
Diff between rcorpora versions 1.2.0 dated 2016-05-02 and 2.0.0 dated 2018-07-17
rcorpora-1.2.0/rcorpora/inst/corpora/data/animals/birds_uk.json |only rcorpora-1.2.0/rcorpora/inst/corpora/data/words/emoji/positive_emoji.json |only rcorpora-1.2.0/rcorpora/inst/corpora/data/words/emoji/sea_emoji.json |only rcorpora-2.0.0/rcorpora/DESCRIPTION | 64 rcorpora-2.0.0/rcorpora/MD5 | 153 rcorpora-2.0.0/rcorpora/NAMESPACE | 1 rcorpora-2.0.0/rcorpora/R/corpora.R | 21 rcorpora-2.0.0/rcorpora/build/rcorpora.pdf |binary rcorpora-2.0.0/rcorpora/inst/NEWS.md | 227 rcorpora-2.0.0/rcorpora/inst/README.markdown | 509 rcorpora-2.0.0/rcorpora/inst/corpora/README.md | 21 rcorpora-2.0.0/rcorpora/inst/corpora/data/animals/birds_north_america.json | 12 rcorpora-2.0.0/rcorpora/inst/corpora/data/animals/cats.json |only rcorpora-2.0.0/rcorpora/inst/corpora/data/animals/collateral_adjectives.json |only rcorpora-2.0.0/rcorpora/inst/corpora/data/animals/dog_names.json |only rcorpora-2.0.0/rcorpora/inst/corpora/data/animals/dogs.json | 1 rcorpora-2.0.0/rcorpora/inst/corpora/data/animals/donkeys.json |only rcorpora-2.0.0/rcorpora/inst/corpora/data/animals/horses.json |only rcorpora-2.0.0/rcorpora/inst/corpora/data/animals/ponies.json |only rcorpora-2.0.0/rcorpora/inst/corpora/data/colors/dulux.json |only rcorpora-2.0.0/rcorpora/inst/corpora/data/colors/google_material_colors.json |only rcorpora-2.0.0/rcorpora/inst/corpora/data/colors/palettes.json |only rcorpora-2.0.0/rcorpora/inst/corpora/data/colors/xkcd.json |only rcorpora-2.0.0/rcorpora/inst/corpora/data/corporations/industries.json | 153 rcorpora-2.0.0/rcorpora/inst/corpora/data/divination/tarot_interpretations.json | 318 rcorpora-2.0.0/rcorpora/inst/corpora/data/divination/zodiac.json |only rcorpora-2.0.0/rcorpora/inst/corpora/data/film-tv/game-of-thrones-houses.json |only rcorpora-2.0.0/rcorpora/inst/corpora/data/film-tv/iab_categories.json |only rcorpora-2.0.0/rcorpora/inst/corpora/data/film-tv/netflix-categories.json |only rcorpora-2.0.0/rcorpora/inst/corpora/data/film-tv/popular-movies.json |only rcorpora-2.0.0/rcorpora/inst/corpora/data/film-tv/tv_shows.json | 1 rcorpora-2.0.0/rcorpora/inst/corpora/data/foods/bad_beers.json |only rcorpora-2.0.0/rcorpora/inst/corpora/data/foods/fruits.json | 1 rcorpora-2.0.0/rcorpora/inst/corpora/data/foods/iba_cocktails.json |only rcorpora-2.0.0/rcorpora/inst/corpora/data/foods/sandwiches.json | 5 rcorpora-2.0.0/rcorpora/inst/corpora/data/foods/sausages.json |only rcorpora-2.0.0/rcorpora/inst/corpora/data/foods/scotch_whiskey.json |only rcorpora-2.0.0/rcorpora/inst/corpora/data/foods/tea.json | 707 + rcorpora-2.0.0/rcorpora/inst/corpora/data/foods/vegetables.json | 6 rcorpora-2.0.0/rcorpora/inst/corpora/data/games/zelda.json |only rcorpora-2.0.0/rcorpora/inst/corpora/data/geography/canadian_municipalities.json |only rcorpora-2.0.0/rcorpora/inst/corpora/data/geography/countries.json | 396 rcorpora-2.0.0/rcorpora/inst/corpora/data/geography/countries_with_capitals.json |only rcorpora-2.0.0/rcorpora/inst/corpora/data/geography/japanese_prefectures.json |only rcorpora-2.0.0/rcorpora/inst/corpora/data/geography/nationalities.json |only rcorpora-2.0.0/rcorpora/inst/corpora/data/geography/norwegian_cities.json |only rcorpora-2.0.0/rcorpora/inst/corpora/data/geography/nyc_neighborhood_zips.json |only rcorpora-2.0.0/rcorpora/inst/corpora/data/geography/sf_neighborhoods.json |only rcorpora-2.0.0/rcorpora/inst/corpora/data/geography/us_airport_codes.json |only rcorpora-2.0.0/rcorpora/inst/corpora/data/geography/us_cities.json | 5227 +++++----- rcorpora-2.0.0/rcorpora/inst/corpora/data/geography/us_counties.json |only rcorpora-2.0.0/rcorpora/inst/corpora/data/geography/us_metropolitan_areas.json |only rcorpora-2.0.0/rcorpora/inst/corpora/data/geography/us_state_capitals.json |only rcorpora-2.0.0/rcorpora/inst/corpora/data/geography/venues.json | 4006 +++---- rcorpora-2.0.0/rcorpora/inst/corpora/data/geography/winds.json |only rcorpora-2.0.0/rcorpora/inst/corpora/data/governments/mass-surveillance-project-names.json |only rcorpora-2.0.0/rcorpora/inst/corpora/data/humans/2016_us_presidential_candidates.json |only rcorpora-2.0.0/rcorpora/inst/corpora/data/humans/atus_activities.json |only rcorpora-2.0.0/rcorpora/inst/corpora/data/humans/celebrities.json |only rcorpora-2.0.0/rcorpora/inst/corpora/data/humans/descriptions.json |only rcorpora-2.0.0/rcorpora/inst/corpora/data/humans/norwayFirstNamesBoys.json |only rcorpora-2.0.0/rcorpora/inst/corpora/data/humans/norwayFirstNamesGirls.json |only rcorpora-2.0.0/rcorpora/inst/corpora/data/humans/norwayLastNames.json |only rcorpora-2.0.0/rcorpora/inst/corpora/data/humans/occupations.json | 12 rcorpora-2.0.0/rcorpora/inst/corpora/data/humans/prefixes.json | 2 rcorpora-2.0.0/rcorpora/inst/corpora/data/humans/thirdPersonPronouns.json |only rcorpora-2.0.0/rcorpora/inst/corpora/data/humans/tolkienCharacterNames.json |only rcorpora-2.0.0/rcorpora/inst/corpora/data/mathematics/primes.json | 2016 +-- rcorpora-2.0.0/rcorpora/inst/corpora/data/mathematics/primes_binary.json |only rcorpora-2.0.0/rcorpora/inst/corpora/data/medicine/hospitals.json |only rcorpora-2.0.0/rcorpora/inst/corpora/data/music/a_list_of_guitar_manufacturers.json |only rcorpora-2.0.0/rcorpora/inst/corpora/data/music/female_classical_guitarists.json |only rcorpora-2.0.0/rcorpora/inst/corpora/data/music/genres.json | 2 rcorpora-2.0.0/rcorpora/inst/corpora/data/music/hamilton_musical_obcrecording_actors_characters.json |only rcorpora-2.0.0/rcorpora/inst/corpora/data/music/instruments.json |only rcorpora-2.0.0/rcorpora/inst/corpora/data/music/xxl_freshman.json |only rcorpora-2.0.0/rcorpora/inst/corpora/data/mythology/greek_myths_master.json |only rcorpora-2.0.0/rcorpora/inst/corpora/data/mythology/lovecraft.json | 36 rcorpora-2.0.0/rcorpora/inst/corpora/data/objects/clothing.json |only rcorpora-2.0.0/rcorpora/inst/corpora/data/objects/corpora_winners.json |only rcorpora-2.0.0/rcorpora/inst/corpora/data/objects/objects.json | 4 rcorpora-2.0.0/rcorpora/inst/corpora/data/plants/plants.json |only rcorpora-2.0.0/rcorpora/inst/corpora/data/religion/christian_saints.json | 66 rcorpora-2.0.0/rcorpora/inst/corpora/data/science/elements.json | 3425 +++++- rcorpora-2.0.0/rcorpora/inst/corpora/data/science/weather_conditions.json |only rcorpora-2.0.0/rcorpora/inst/corpora/data/sports/football |only rcorpora-2.0.0/rcorpora/inst/corpora/data/sports/mlb_teams.json |only rcorpora-2.0.0/rcorpora/inst/corpora/data/sports/nba_mvps.json |only rcorpora-2.0.0/rcorpora/inst/corpora/data/sports/nba_teams.json |only rcorpora-2.0.0/rcorpora/inst/corpora/data/sports/nfl_teams.json | 16 rcorpora-2.0.0/rcorpora/inst/corpora/data/sports/nhl_teams.json |only rcorpora-2.0.0/rcorpora/inst/corpora/data/sports/olympics.json |only rcorpora-2.0.0/rcorpora/inst/corpora/data/technology/computer_sciences.json | 4 rcorpora-2.0.0/rcorpora/inst/corpora/data/technology/new_technologies.json | 5 rcorpora-2.0.0/rcorpora/inst/corpora/data/technology/programming_languages.json | 2 rcorpora-2.0.0/rcorpora/inst/corpora/data/transportation |only rcorpora-2.0.0/rcorpora/inst/corpora/data/travel |only rcorpora-2.0.0/rcorpora/inst/corpora/data/words/adjs.json | 1 rcorpora-2.0.0/rcorpora/inst/corpora/data/words/compounds.json |only rcorpora-2.0.0/rcorpora/inst/corpora/data/words/emoji/emoji.json |only rcorpora-2.0.0/rcorpora/inst/corpora/data/words/ergative_verbs.json |only rcorpora-2.0.0/rcorpora/inst/corpora/data/words/expletives.json |only rcorpora-2.0.0/rcorpora/inst/corpora/data/words/harvard_sentences.json |only rcorpora-2.0.0/rcorpora/inst/corpora/data/words/infinitive_verbs.json |only rcorpora-2.0.0/rcorpora/inst/corpora/data/words/literature/infinitejest.json |only rcorpora-2.0.0/rcorpora/inst/corpora/data/words/literature/lovecraft_words.json |only rcorpora-2.0.0/rcorpora/inst/corpora/data/words/literature/technology_quotes.json |only rcorpora-2.0.0/rcorpora/inst/corpora/data/words/personal_pronouns.json |only rcorpora-2.0.0/rcorpora/inst/corpora/data/words/possessive_pronouns.json |only rcorpora-2.0.0/rcorpora/inst/corpora/data/words/prepositions.json |only rcorpora-2.0.0/rcorpora/inst/corpora/data/words/state_verbs.json |only rcorpora-2.0.0/rcorpora/inst/corpora/data/words/stopwords/bg.json | 2 rcorpora-2.0.0/rcorpora/inst/corpora/data/words/strange_words.json |only rcorpora-2.0.0/rcorpora/inst/corpora/data/words/units_of_time.json |only rcorpora-2.0.0/rcorpora/inst/corpora/data/words/verbs_with_conjugations.json |only rcorpora-2.0.0/rcorpora/man/categories.Rd | 1 rcorpora-2.0.0/rcorpora/man/corpora.Rd | 2 117 files changed, 10470 insertions(+), 6955 deletions(-)
Title: Interpreted String Literals
Description: An implementation of interpreted string literals, inspired by
Python's Literal String Interpolation <https://www.python.org/dev/peps/pep-0498/> and Docstrings
<https://www.python.org/dev/peps/pep-0257/> and Julia's Triple-Quoted String Literals
<https://docs.julialang.org/en/stable/manual/strings/#triple-quoted-string-literals>.
Author: Jim Hester [aut, cre]
Maintainer: Jim Hester <james.f.hester@gmail.com>
Diff between glue versions 1.2.0 dated 2017-10-29 and 1.3.0 dated 2018-07-17
glue-1.2.0/glue/man/collapse.Rd |only glue-1.2.0/glue/man/evaluate.Rd |only glue-1.3.0/glue/DESCRIPTION | 10 glue-1.3.0/glue/MD5 | 64 +-- glue-1.3.0/glue/NAMESPACE | 7 glue-1.3.0/glue/NEWS.md | 33 + glue-1.3.0/glue/R/color.R |only glue-1.3.0/glue/R/glue.R | 96 +++-- glue-1.3.0/glue/R/knitr.R |only glue-1.3.0/glue/R/quoting.R | 4 glue-1.3.0/glue/R/sql.R | 52 +- glue-1.3.0/glue/R/transformer.R | 22 - glue-1.3.0/glue/R/utils.R | 29 + glue-1.3.0/glue/R/zzz.R |only glue-1.3.0/glue/README.md | 88 +++- glue-1.3.0/glue/build/vignette.rds |binary glue-1.3.0/glue/inst/doc/speed.R | 9 glue-1.3.0/glue/inst/doc/speed.Rmd | 15 glue-1.3.0/glue/inst/doc/speed.html | 348 ++++++++++++++---- glue-1.3.0/glue/inst/doc/transformers.R | 59 ++- glue-1.3.0/glue/inst/doc/transformers.Rmd | 77 ++-- glue-1.3.0/glue/inst/doc/transformers.html | 462 ++++++++++++++++++------- glue-1.3.0/glue/man/figures |only glue-1.3.0/glue/man/glue-deprecated.Rd |only glue-1.3.0/glue/man/glue.Rd | 24 - glue-1.3.0/glue/man/glue_col.Rd |only glue-1.3.0/glue/man/glue_collapse.Rd |only glue-1.3.0/glue/man/glue_sql.Rd | 24 + glue-1.3.0/glue/man/identity_transformer.Rd |only glue-1.3.0/glue/man/quoting.Rd | 4 glue-1.3.0/glue/src/glue.c | 49 +- glue-1.3.0/glue/src/trim.c | 3 glue-1.3.0/glue/tests/testthat/test-collapse.R | 54 +- glue-1.3.0/glue/tests/testthat/test-color.R |only glue-1.3.0/glue/tests/testthat/test-glue.R | 257 ++++++++----- glue-1.3.0/glue/tests/testthat/test-sql.R | 11 glue-1.3.0/glue/vignettes/releases |only glue-1.3.0/glue/vignettes/speed.Rmd | 15 glue-1.3.0/glue/vignettes/transformers.Rmd | 77 ++-- 39 files changed, 1347 insertions(+), 546 deletions(-)
Title: Package for Reading Binary Files
Description: Functions and analytics for GENEA-compatible accelerometer data into R objects. See topic 'GENEAread' for an introduction to the package.
Author: Zhou Fang [aut],
Joss Langford [aut],
Charles Sweetland [aut, cre]
Maintainer: Charles Sweetland <charles@sweetland-solutions.co.uk>
Diff between GENEAread versions 2.0.2 dated 2018-07-03 and 2.0.5 dated 2018-07-17
DESCRIPTION | 10 ++-- MD5 | 19 ++++---- R/AccData.r | 1 R/header.info.R | 2 R/parse.time.R | 2 R/read.bin.R | 109 +++++++++++++++++++++++++++++++---------------- R/stftmod.R | 3 - man/AccData.Rd | 1 man/GENEAread-package.Rd | 10 +++- man/is.POSIXct.Rd |only man/stft.Rd | 1 11 files changed, 103 insertions(+), 55 deletions(-)
Title: Biomarker Prognostic Enrichment Tool
Description: Prognostic Enrichment is a clinical trial strategy of evaluating an intervention in a patient population with a higher rate of the unwanted event than the broader patient population (R. Temple (2010) <DOI:10.1038/clpt.2010.233>). A higher event rate translates to a lower sample size for the clinical trial, which can have both practical and ethical advantages. This package is a tool to help evaluate biomarkers for prognostic enrichment of clinical trials.
Author: Jeremy Roth [cre, aut],
Kathleen F. Kerr [aut],
Kehao Zhu [aut]
Maintainer: Jeremy Roth <jhroth@uw.edu>
Diff between BioPET versions 0.2.1 dated 2017-02-17 and 0.2.2 dated 2018-07-17
DESCRIPTION | 11 ++++++----- MD5 | 14 +++++++------- R/enrichment_analysis.R | 24 ++++++++++++------------ R/plot_enrichment_summaries.R | 1 + man/dcaData.Rd | 1 - man/enrichment_analysis.Rd | 3 +-- man/enrichment_simulation.Rd | 1 - man/plot_enrichment_summaries.Rd | 1 - 8 files changed, 27 insertions(+), 29 deletions(-)
Title: Classes and Methods for Spatio-Temporal Data
Description: Classes and methods for spatio-temporal data, including space-time regular lattices, sparse lattices, irregular data, and trajectories; utility functions for plotting data as map sequences (lattice or animation) or multiple time series; methods for spatial and temporal selection and subsetting, as well as for spatial/temporal/spatio-temporal matching or aggregation, retrieving coordinates, print, summary, etc.
Author: Edzer Pebesma [aut, cre] (<https://orcid.org/0000-0001-8049-7069>),
Benedikt Graeler [ctb],
Tom Gottfried [ctb],
Robert J. Hijmans [ctb]
Maintainer: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Diff between spacetime versions 1.2-1 dated 2017-09-24 and 1.2-2 dated 2018-07-17
DESCRIPTION | 11 - MD5 | 26 ++-- build/vignette.rds |binary data/air.rda |binary data/fires.rda |binary inst/doc/jss816.pdf |binary inst/doc/stgvis.html | 267 ++++++++++++++++++++------------------------ inst/doc/sto.pdf |binary inst/doc/stpg.pdf |binary inst/doc/stsubs.pdf |binary man/na.Rd | 2 tests/rw.Rout.save | 12 - tests/stconstruct.Rout.save | 19 +-- tests/wind.Rout.save | 17 +- 14 files changed, 169 insertions(+), 185 deletions(-)
Title: Reverse Engineering Decoupled and Censored Data
Description: An issue occurs when authors may have privy too but normally do not reveal clear information. Decoupled variables (e.g. separate averages) and numeric censoring (e.g. between ages 10-15) are reoccurring instances found in areas ranging from demographic and epidemiological data to ecological inference problems. Decoupled variables provide no availability for cross tabulations while censoring obscures the true underlying values. The revengc R package was developed to reverse engineer this unclear information that is continually reported by many well-established organizations (e.g. World Health Organization (WHO), Centers for Disease Control and Prevention (CDC), World Bank, and various national censuses). There are two main functions in revengc and both fit data to a Poisson or Quasi-Poisson distribution. The estimated_lambda function takes a univariate censored frequency table and approximates its lambda (average) value. The rec function calculates an uncensored bivariate table from decoupled and summarized arguments.
Author: Samantha Duchscherer [aut, cre],
UT-Battelle, LLC [cph]
Maintainer: Samantha Duchscherer <sam.duchscherer@gmail.com>
Diff between revengc versions 1.0.0 dated 2017-08-18 and 1.0.1 dated 2018-07-17
revengc-1.0.0/revengc/R/revengc_function.R |only revengc-1.0.0/revengc/data/hongkong_area.RData |only revengc-1.0.0/revengc/data/hongkong_hhs.RData |only revengc-1.0.0/revengc/data/indonesia_contingency.RData |only revengc-1.0.0/revengc/data/iran_hhs.RData |only revengc-1.0.0/revengc/data/nepal_hhs.RData |only revengc-1.0.0/revengc/inst/doc/methodbehind_reverseengineeringcensus.ltx |only revengc-1.0.0/revengc/inst/doc/methodbehind_reverseengineeringcensus.pdf |only revengc-1.0.0/revengc/man/hongkong_area.Rd |only revengc-1.0.0/revengc/man/hongkong_hhs.Rd |only revengc-1.0.0/revengc/man/indonesia_contingency.Rd |only revengc-1.0.0/revengc/man/iran_hhs.Rd |only revengc-1.0.0/revengc/man/nepal_hhs.Rd |only revengc-1.0.0/revengc/man/reverseengineercensus.Rd |only revengc-1.0.0/revengc/vignettes/36cases_bivtable.png |only revengc-1.0.0/revengc/vignettes/caseIII_workflow.png |only revengc-1.0.0/revengc/vignettes/caseII_workflow.png |only revengc-1.0.0/revengc/vignettes/caseIV_workflow.png |only revengc-1.0.0/revengc/vignettes/caseI_workflow.png |only revengc-1.0.0/revengc/vignettes/methodbehind_reverseengineeringcensus.ltx |only revengc-1.0.1/revengc/DESCRIPTION | 15 revengc-1.0.1/revengc/LICENSE | 2 revengc-1.0.1/revengc/MD5 | 50 +- revengc-1.0.1/revengc/NAMESPACE | 4 revengc-1.0.1/revengc/R/estimated_lambda_function.R |only revengc-1.0.1/revengc/R/format_data_for_functions.R |only revengc-1.0.1/revengc/R/poisson_trunc_functions.R |only revengc-1.0.1/revengc/R/rec_function.R |only revengc-1.0.1/revengc/R/seedmatrix_function.R |only revengc-1.0.1/revengc/README.md | 246 ++++++---- revengc-1.0.1/revengc/build/vignette.rds |binary revengc-1.0.1/revengc/data/contingency_table_example.RData |only revengc-1.0.1/revengc/data/univariate_table_example.RData |only revengc-1.0.1/revengc/inst/doc/duchscherer-stewart-urban.ltx |only revengc-1.0.1/revengc/inst/doc/duchscherer-stewart-urban.pdf |only revengc-1.0.1/revengc/man/column_marginal.Rd |only revengc-1.0.1/revengc/man/contingency_table_example.Rd |only revengc-1.0.1/revengc/man/dqpois_trunc.Rd |only revengc-1.0.1/revengc/man/estimated_lambda.Rd |only revengc-1.0.1/revengc/man/rec.Rd |only revengc-1.0.1/revengc/man/row_marginal.Rd |only revengc-1.0.1/revengc/man/seedmatrix.Rd |only revengc-1.0.1/revengc/man/univariate_table_example.Rd |only revengc-1.0.1/revengc/vignettes/duchscherer-stewart-urban.bib |only revengc-1.0.1/revengc/vignettes/duchscherer-stewart-urban.ltx |only revengc-1.0.1/revengc/vignettes/workflow_overview.png |only 46 files changed, 186 insertions(+), 131 deletions(-)
Title: Multivariate Interpolation
Description: Contains methods for creating multivariate
interpolations of functions on a hypercube. If available through fftw3, the DCT-II/FFT
is used to compute coefficients for a Chebyshev interpolation.
Other interpolation methods for arbitrary Cartesian grids are also provided, a piecewise multilinear,
and the Floater-Hormann barycenter method. For scattered data polyharmonic splines with a linear term
is provided. The time-critical parts are written in C for speed. All interpolants are parallelized if
used to evaluate more than one point.
Author: Simen Gaure [aut, cre] (Ragnar Frisch Centre for Economic Research)
Maintainer: Simen Gaure <Simen.Gaure@frisch.uio.no>
Diff between chebpol versions 1.5 dated 2018-07-05 and 1.6 dated 2018-07-17
DESCRIPTION | 26 + MD5 | 72 +++-- NAMESPACE | 25 + R/alglib.R |only R/chebpol-package.R |only R/chebpol.R | 374 --------------------------- R/chebyshev.R |only R/floater-hormann.R |only R/interpolant.R |only R/ipol.R | 103 +++++++ R/multilinear.R |only R/polyharmonic.R |only R/simplexlinear.R |only R/tools.R |only R/uniform.R |only build/vignette.rds |binary configure | 644 ++++++++++++++++++++++++------------------------ configure.ac | 49 ++- inst/doc/chebpol.R | 77 ++--- inst/doc/chebpol.Rnw | 92 ++++-- inst/doc/chebpol.pdf |binary inst/doc/chebusage.R |only inst/doc/chebusage.Rnw |only inst/doc/chebusage.pdf |only man/chebappx.Rd | 69 ++--- man/chebappxg.Rd | 75 ++--- man/chebcoef.Rd | 55 ++-- man/chebeval.Rd | 27 +- man/chebknots.Rd | 37 +- man/chebpol-package.Rd | 142 +++++----- man/evalongrid.Rd | 90 +++--- man/fhappx.Rd | 52 +-- man/havefftw.Rd | 16 - man/interpolant.Rd |only man/ipol.Rd | 129 +++++---- man/mlappx.Rd | 42 +-- man/polyh.Rd | 73 ++--- man/slappx.Rd |only man/ucappx.Rd | 78 ++--- src/Makevars.in | 2 src/Makevars.win | 2 src/chebpol.c | 532 +++++++++++++++++++++++++++++---------- src/rbfalglib.cpp | 2 vignettes/chebpol.Rnw | 92 ++++-- vignettes/chebusage.Rnw |only 45 files changed, 1556 insertions(+), 1421 deletions(-)
Title: Analyze and Forecast Credit Migrations
Description: A set of functions used to automate commonly used methods in credit risk to estimate migration (transition) matrices. The package includes multiple methods for bootstrapping default rates and forecasting/stress testing credit exposures migrations, via Econometric and Machine Learning approaches. More information can be found at <https://analyticsrusers.blog>.
Author: Ab NDiaye
Maintainer: Ab NDiaye <ab.ndiaye@illumirisk.com>
Diff between RTransProb versions 0.3.1 dated 2018-07-09 and 0.3.3 dated 2018-07-17
DESCRIPTION | 10 +++++----- MD5 | 10 ++++++---- R/RTransProb.R | 9 +++++++++ R/TransitionProb.R | 26 ++++++++++++-------------- data/dataTM.RData |only man/TransitionProb.Rd | 20 ++++++++++---------- man/dataTM.Rd |only 7 files changed, 42 insertions(+), 33 deletions(-)
Title: Risk Model Decision Analysis
Description: Provides tools to evaluate the value of using a risk prediction instrument to decide treatment or intervention (versus no treatment or intervention). Given one or more risk prediction instruments (risk models) that estimate the probability of a binary outcome, rmda provides functions to estimate and display decision curves and other figures that help assess the population impact of using a risk model for clinical decision making. Here, "population" refers to the relevant patient population. Decision curves display estimates of the (standardized) net benefit over a range of probability thresholds used to categorize observations as 'high risk'. The curves help evaluate a treatment policy that recommends treatment for patients who are estimated to be 'high risk' by comparing the population impact of a risk-based policy to "treat all" and "treat none" intervention policies. Curves can be estimated using data from a prospective cohort. In addition, rmda can estimate decision curves using data from a case-control study if an estimate of the population outcome prevalence is available. Version 1.4 of the package provides an alternative framing of the decision problem for situations where treatment is the standard-of-care and a risk model might be used to recommend that low-risk patients (i.e., patients below some risk threshold) opt out of treatment. Confidence intervals calculated using the bootstrap can be computed and displayed. A wrapper function to calculate cross-validated curves using k-fold cross-validation is also provided.
Author: Marshall Brown
Maintainer: Marshall Brown <mdbrown@fredhutch.org>
Diff between rmda versions 1.5 dated 2018-03-21 and 1.6 dated 2018-07-17
rmda-1.5/rmda/inst/notes/tutorial.html |only rmda-1.6/rmda/DESCRIPTION | 8 ++++---- rmda-1.6/rmda/MD5 | 15 +++++++-------- rmda-1.6/rmda/NEWS | 6 ++++++ rmda-1.6/rmda/R/decision_curve.R | 14 ++++++++++---- rmda-1.6/rmda/R/plot_functions_main.R | 2 +- rmda-1.6/rmda/R/plot_functions_sub.R | 26 ++++++++++++++++++++++---- rmda-1.6/rmda/R/summary.decision_curve.R | 11 +++++++++-- rmda-1.6/rmda/inst/notes/tutorial.Rmd | 4 +++- 9 files changed, 62 insertions(+), 24 deletions(-)
Title: Functions to Make Surveys Processing Easier
Description: Set of functions to make the processing and analysis of
surveys easier : interactive shiny apps and addins for data recoding,
contingency tables, dataset metadata handling, and several convenience
functions.
Author: Julien Barnier [aut, cre],
François Briatte [aut],
Joseph Larmarange [aut]
Maintainer: Julien Barnier <julien.barnier@ens-lyon.fr>
Diff between questionr versions 0.6.2 dated 2017-11-01 and 0.6.3 dated 2018-07-17
DESCRIPTION | 14 ++- MD5 | 43 +++++------ NAMESPACE | 13 +++ NEWS.md | 9 ++ R/describe.R | 10 +- R/tables.R | 160 +++++++++++++++++++++++++++++++++++-------- R/tools.R | 40 +++++----- R/weighting.R | 99 +++++++++++++++++++++++++- build/vignette.rds |binary data/fecondite.RData |binary data/fertility.RData |binary data/happy.RData |binary data/hdv2003.RData |binary data/rp2012.RData |binary data/rp99.RData |binary man/clipcopy.Rd | 11 +- man/cprop.Rd | 21 +++++ man/prop.Rd | 21 +++++ man/rprop.Rd | 21 +++++ man/tabs.Rd |only man/wtd.mean.Rd | 2 man/wtd.table.Rd | 8 +- tests/testthat/test_tables.R | 45 +++++++++++- 23 files changed, 420 insertions(+), 97 deletions(-)
Title: Psychometric Meta-Analysis Toolkit
Description: Tools for computing bare-bones and psychometric meta-analyses and for generating psychometric data for use in meta-analysis simulations. Supports bare-bones, individual-correction, and artifact-distribution methods for meta-analyzing correlations and d values. Includes tools for converting effect sizes, computing sporadic artifact corrections, reshaping meta-analytic databases, computing multivariate corrections for range variation, and more. Bugs can be reported to <https://github.com/psychmeta/psychmeta/issues> or <issues@psychmeta.com>.
Author: Jeffrey A. Dahlke [aut, cre],
Brenton M. Wiernik [aut],
Michael T. Brannick [ctb] (Testing),
Jack Kostal [ctb] (Code for reshape_mat2dat function),
Sean Potter [ctb] (Testing; Code for cumulative and leave1out plots),
John Sakaluk [ctb] (Code for funnel and forest plots),
Yuejia (Mandy) Teng [ctb] (Testing)
Maintainer: Jeffrey A. Dahlke <dahlk068@umn.edu>
Diff between psychmeta versions 2.1.5 dated 2018-07-09 and 2.1.7 dated 2018-07-17
DESCRIPTION | 14 - MD5 | 14 - NAMESPACE | 1 NEWS | 84 ++++++----- R/lm_mat.R | 361 ++++++++++++++++++++++++++++++++++++++++++++++++- R/ma_generic.R | 13 + R/output.R | 25 ++- inst/doc/overview.html | 2 8 files changed, 443 insertions(+), 71 deletions(-)
Title: Query 'HaploReg', 'RegulomeDB', 'LDlink'
Description: A set of utilities for querying
'HaploReg' <http://archive.broadinstitute.org/mammals/haploreg/haploreg.php>,
'RegulomeDB' <http://www.regulomedb.org>, and LDlink <https://analysistools.nci.nih.gov/LDlink>
web-based tools. The package connects to
'HaploReg', 'RegulomeDB' and 'LDlink', searches and downloads results, without
opening web pages, directly from R environment.
Results are stored in a data frame that can be directly used in various
kinds of downstream analyses.
Author: Ilya Y. Zhbannikov [aut, cre],
Konstantin G. Arbeev [aut],
Anatoliy I. Yashin [aut]
Maintainer: Ilya Y. Zhbannikov <ilya.zhbannikov@duke.edu>
Diff between haploR versions 2.0.4 dated 2018-07-15 and 2.0.5 dated 2018-07-17
DESCRIPTION | 10 +++--- MD5 | 30 +++++++++---------- R/LDlink.R | 8 +++-- R/haploreg.R | 7 ++-- R/haploregExtendedView.R | 5 +-- R/haploregStudy.R | 5 +-- R/settings.R | 5 +++ inst/NEWS | 4 +- inst/doc/haplor-vignette.R | 9 +++++ inst/doc/haplor-vignette.Rmd | 32 ++++++++++++++------ inst/doc/haplor-vignette.html | 59 +++++++++++++++++++++++--------------- man/haploR-getExtendedView.Rd | 6 +-- man/haploR-getStudyList.Rd | 6 +-- man/haploR-makeStylishLDmatrix.Rd | 7 ++-- man/haploR-queryHaploreg.Rd | 8 ++--- vignettes/haplor-vignette.Rmd | 32 ++++++++++++++------ 16 files changed, 148 insertions(+), 85 deletions(-)
Title: An Easy Way to Descriptive Analysis
Description: Descriptive analysis is essential for publishing medical articles.
This package provides an easy way to conduct the descriptive analysis.
1. Both numeric and factor variables can be handled. For numeric variables, normality test will be applied to choose the parametric and nonparametric test.
2. Both two or more groups can be handled. For groups more than two, the post hoc test will be applied, 'Tukey' for the numeric variables and 'FDR' for the factor variables.
3. T test, ANOVA or Fisher test can be forced to apply.
4. Mean and standard deviation can be forced to display.
Author: Zhicheng Du, Yuantao Hao
Maintainer: Zhicheng Du<dgdzc@hotmail.com>
Diff between easyDes versions 3.0 dated 2017-04-11 and 4.0 dated 2018-07-17
DESCRIPTION | 11 +- MD5 | 8 - NAMESPACE | 5 - R/eastDes.R | 274 ++++++++++++++++++++++++++++++++++++++++++--------------- man/easyDes.Rd | 37 +++++-- 5 files changed, 245 insertions(+), 90 deletions(-)
Title: A Graphic User Interface to Dexter
Description: A graphical user interface for dexter. Offers Classical Test and Item analysis,
Item Response analysis and data management for educational and psychological tests.
Author: Jesse Koops, Eva de Schipper, Ivailo Partchev, Timo Bechger, Gunter Maris
Maintainer: jesse koops <jesse.koops@cito.nl>
Diff between dextergui versions 0.1.3 dated 2018-06-13 and 0.1.4 dated 2018-07-17
DESCRIPTION | 6 - MD5 | 26 +++---- NAMESPACE | 3 NEWS.md | 6 + R/gui.R | 35 ++++++--- R/misc.R | 21 +++++ R/serve.R | 166 ++++------------------------------------------ R/tags.R | 43 ++++++++--- build/vignette.rds |binary inst/www/dt_extensions.js | 2 inst/www/patches.js | 2 inst/www/pr_helper.js | 25 ++++-- inst/www/shinydexter.css | 44 ++++++++---- man/dextergui.Rd | 2 14 files changed, 162 insertions(+), 219 deletions(-)
Title: Calibration Functions for Analytical Chemistry
Description: Simple functions for plotting linear
calibration functions and estimating standard errors for measurements
according to the Handbook of Chemometrics and Qualimetrics: Part A
by Massart et al. There are also functions estimating the limit
of detection (LOD) and limit of quantification (LOQ).
The functions work on model objects from - optionally weighted - linear
regression (lm) or robust linear regression ('rlm' from the 'MASS' package).
Author: Johannes Ranke [aut, cre, cph]
(<https://orcid.org/0000-0003-4371-6538>)
Maintainer: Johannes Ranke <jranke@uni-bremen.de>
Diff between chemCal versions 0.1-37 dated 2015-10-08 and 0.2.1 dated 2018-07-17
chemCal-0.1-37/chemCal/TODO |only chemCal-0.1-37/chemCal/inst/doc/chemCal.Rnw |only chemCal-0.1-37/chemCal/inst/doc/chemCal.pdf |only chemCal-0.1-37/chemCal/inst/staticdocs |only chemCal-0.1-37/chemCal/inst/web |only chemCal-0.1-37/chemCal/tests/din32645.R |only chemCal-0.1-37/chemCal/tests/din32645.Rout.save |only chemCal-0.1-37/chemCal/tests/massart97.R |only chemCal-0.1-37/chemCal/tests/massart97.Rout.save |only chemCal-0.1-37/chemCal/vignettes/chemCal.Rnw |only chemCal-0.2.1/chemCal/DESCRIPTION | 25 +++++--- chemCal-0.2.1/chemCal/MD5 | 71 +++++++++-------------- chemCal-0.2.1/chemCal/NEWS.md |only chemCal-0.2.1/chemCal/R/inverse.predict.lm.R | 25 +++----- chemCal-0.2.1/chemCal/R/lod.R | 1 chemCal-0.2.1/chemCal/R/loq.R | 1 chemCal-0.2.1/chemCal/README.md |only chemCal-0.2.1/chemCal/build/vignette.rds |binary chemCal-0.2.1/chemCal/data/din32645.rda |binary chemCal-0.2.1/chemCal/data/rl95_toluene.rda |only chemCal-0.2.1/chemCal/data/utstats14.rda |only chemCal-0.2.1/chemCal/inst/doc/chemCal.R | 39 ++++-------- chemCal-0.2.1/chemCal/inst/doc/chemCal.Rmd |only chemCal-0.2.1/chemCal/inst/doc/chemCal.html |only chemCal-0.2.1/chemCal/man/din32645.Rd | 13 +--- chemCal-0.2.1/chemCal/man/inverse.predict.Rd | 25 +++++++- chemCal-0.2.1/chemCal/man/lod.Rd | 1 chemCal-0.2.1/chemCal/man/loq.Rd | 4 - chemCal-0.2.1/chemCal/man/massart97ex3.Rd | 31 +++++----- chemCal-0.2.1/chemCal/man/rl95_toluene.Rd |only chemCal-0.2.1/chemCal/man/utstats14.Rd |only chemCal-0.2.1/chemCal/tests/testthat |only chemCal-0.2.1/chemCal/tests/testthat.R |only chemCal-0.2.1/chemCal/vignettes/chemCal.Rmd |only chemCal-0.2.1/chemCal/vignettes/references.bib |only 35 files changed, 116 insertions(+), 120 deletions(-)
Title: Formal Psychological Models of Categorization and Learning
Description: Formal psychological models of categorization and learning, independently-replicated data sets against which to test them, and simulation archives.
Author: Andy Wills, Lenard Dome, Charlotte Edmunds, Garrett Honke, Angus Inkster, René Schlegelmilch, Stuart Spicer
Maintainer: Andy Wills <andy@willslab.co.uk>
Diff between catlearn versions 0.5 dated 2017-12-11 and 0.6 dated 2018-07-17
DESCRIPTION | 14 ++++++----- MD5 | 54 ++++++++++++++++++++++++++++++++++++--------- R/krus96exit.R |only R/krus96train.R |only R/nosof94sustain.R |only R/nosof94train.R | 60 ++++++++++++++++++++++++++++++-------------------- R/slpEXIT.R |only R/slpSUSTAIN.R |only data/homa76.RData |only data/krus96.RData |only man/homa76.Rd |only man/krus96.Rd |only man/krus96exit.Rd |only man/krus96train.Rd |only man/nosof88.Rd | 54 ++++++++++++--------------------------------- man/nosof94.Rd | 41 ++++++++++------------------------ man/nosof94sustain.Rd |only man/nosof94train.Rd | 58 ++++++++++++++++++++++++++---------------------- man/shin92.Rd | 33 +++++++-------------------- man/shin92oat.Rd | 9 ++++--- man/slpEXIT.Rd |only man/slpSUSTAIN.Rd |only src/slpBM.cpp | 2 - src/slpRW.cpp | 2 - src/slpcovis.cpp | 2 - tests |only 26 files changed, 165 insertions(+), 164 deletions(-)
Title: Wrapper Algorithm for All Relevant Feature Selection
Description: An all relevant feature selection wrapper algorithm.
It finds relevant features by comparing original attributes' importance with importance achievable at random, estimated using their permuted copies (shadows).
Author: Miron Bartosz Kursa [aut, cre]
(<https://orcid.org/0000-0001-7672-648X>),
Witold Remigiusz Rudnicki [aut]
Maintainer: Miron Bartosz Kursa <M.Kursa@icm.edu.pl>
Diff between Boruta versions 5.3.0 dated 2018-03-19 and 6.0.0 dated 2018-07-17
DESCRIPTION | 10 ++++----- MD5 | 35 +++++++++++++++++++------------- NAMESPACE | 3 ++ R/Boruta.R | 22 +++++++++++--------- R/importance.R | 39 +++++++++++++++++++++++++++++------- R/tools.R | 46 ++++++++++++++----------------------------- build |only inst/NEWS | 6 +++++ inst/doc |only man/Boruta.Rd | 11 +--------- man/TentativeRoughFix.Rd | 3 -- man/attStats.Rd | 3 -- man/getImpExtra.Rd |only man/getImpXgboost.Rd | 2 - man/getSelectedAttributes.Rd | 3 -- man/plot.Boruta.Rd | 3 -- man/plotImpHistory.Rd | 3 -- man/print.Boruta.Rd | 3 -- vignettes |only 19 files changed, 97 insertions(+), 95 deletions(-)
Title: Stochastic Process Model for Analysis of Longitudinal and
Time-to-Event Outcomes
Description: Utilities to estimate parameters of the models with survival functions
induced by stochastic covariates. Miscellaneous functions for data preparation
and simulation are also provided. For more information, see:
(i)"Stochastic model for analysis of longitudinal data on aging and mortality"
by Yashin A. et al. (2007),
Mathematical Biosciences, 208(2), 538-551, <DOI:10.1016/j.mbs.2006.11.006>;
(ii) "Health decline, aging and mortality: how are they related?"
by Yashin A. et al. (2007),
Biogerontology 8(3), 291(302), <DOI:10.1007/s10522-006-9073-3>.
Author: I. Y. Zhbannikov, Liang He, K. G. Arbeev, A. I. Yashin.
Maintainer: Ilya Y. Zhbannikov <ilya.zhbannikov@duke.edu>
Diff between stpm versions 1.6.9 dated 2018-05-20 and 1.7.5 dated 2018-07-17
DESCRIPTION | 10 MD5 | 40 +- NAMESPACE | 1 R/LRTest.R |only R/general.R | 1 R/predict.R |only R/spm.impute.R | 79 ++-- R/spm_con_1d.r | 23 + R/spm_con_1d_g.r | 487 ++++++++++++++++------------- R/spm_time-dependent.R | 737 +++++++++++++++++++++----------------------- R/utils.R |only README.md | 38 -- inst/NEWS | 10 inst/doc/stpm-vignette.R | 85 ++++- inst/doc/stpm-vignette.Rmd | 122 +++++++ inst/doc/stpm-vignette.html | 645 +++++++++++++++++++++++--------------- man/LRTest.Rd |only man/spm_con_1d_g.Rd | 6 man/spm_time_dep.Rd | 16 man/trim.Rd | 2 man/trim.leading.Rd | 2 man/trim.trailing.Rd | 2 vignettes/stpm-vignette.Rmd | 122 +++++++ 23 files changed, 1461 insertions(+), 967 deletions(-)
Title: Categorical Data Analysis and Visualization
Description: Categorical Data Analysis and Visualization.
Author: Alexander Pilhoefer <alexander.pilhoefer@gmail.com>
Maintainer: Alexander Pilhoefer <alexander.pilhoefer@gmail.com>
Diff between extracat versions 1.7-5 dated 2018-06-03 and 1.7-6 dated 2018-07-17
DESCRIPTION | 8 MD5 | 6 R/facetshade.R | 559 ++++++++++++++++++++++++++++----------------------------- man/plants.Rd | 2 4 files changed, 289 insertions(+), 286 deletions(-)
Title: Dynamic Estimation of Group-Level Opinion
Description: Fit dynamic group-level item response theory (IRT) and multilevel
regression and poststratification (MRP) models from item response data. dgo
models latent traits at the level of demographic and geographic groups,
rather than individuals, in a Bayesian group-level IRT approach developed by
Caughey and Warshaw (2015) <doi:10.1093/pan/mpu021>. The package also
estimates subpopulations' average responses to single survey items with a
dynamic MRP model proposed by Park, Gelman, and Bafumi (2004)
<doi:10.11126/stanford/9780804753005.003.0011>.
Author: James Dunham [aut, cre],
Devin Caughey [aut],
Christopher Warshaw [aut]
Maintainer: James Dunham <james@jdunham.io>
Diff between dgo versions 0.2.14 dated 2017-12-22 and 0.2.15 dated 2018-07-17
DESCRIPTION | 12 ++-- MD5 | 20 +++---- NEWS.md | 6 ++ R/methods-dgirtfit-plot.r | 22 +++---- README.md | 121 ++++++++++++++++++++++++++++++------------- data/toy_dgirt_in.rda |binary data/toy_dgirtfit.rda |binary man/plot-method.Rd | 8 +- tests/testthat/dgirt_ret.Rds |binary tests/testthat/dgmrp_ret.Rds |binary tests/testthat/test-plot.r | 18 +++--- 11 files changed, 131 insertions(+), 76 deletions(-)
Title: Quickly Create Elegant Regression Results Tables and Plots when
Modelling
Description: Generate regression results tables and plots in final
format for publication. Explore models and export directly to PDF
and 'Word' using 'RMarkdown'.
Author: Ewen Harrison, Tom Drake, Riinu Ots
Maintainer: Ewen Harrison <ewen.harrison@ed.ac.uk>
Diff between finalfit versions 0.7.8 dated 2018-06-27 and 0.8.1 dated 2018-07-17
finalfit-0.7.8/finalfit/R/finalfit_merge.R |only finalfit-0.7.8/finalfit/R/finalfit_missing.R |only finalfit-0.7.8/finalfit/man/finalfit_merge.Rd |only finalfit-0.7.8/finalfit/man/finalfit_missing.Rd |only finalfit-0.8.1/finalfit/DESCRIPTION | 12 ++-- finalfit-0.8.1/finalfit/MD5 | 46 +++++++++------- finalfit-0.8.1/finalfit/NAMESPACE | 13 +++- finalfit-0.8.1/finalfit/NEWS |only finalfit-0.8.1/finalfit/R/boot_compare.R |only finalfit-0.8.1/finalfit/R/boot_predict.R |only finalfit-0.8.1/finalfit/R/ff_glimpse.R |only finalfit-0.8.1/finalfit/R/ff_merge.R |only finalfit-0.8.1/finalfit/R/ff_missing.R |only finalfit-0.8.1/finalfit/R/ff_newdata.R |only finalfit-0.8.1/finalfit/R/finalfit.R | 1 finalfit-0.8.1/finalfit/R/finalfit_glm.R | 2 finalfit-0.8.1/finalfit/R/finalfit_internal_functions.R | 18 +++++- finalfit-0.8.1/finalfit/R/finalfit_package.R | 8 ++ finalfit-0.8.1/finalfit/R/hr_plot.R | 4 + finalfit-0.8.1/finalfit/R/or_plot.R | 5 + finalfit-0.8.1/finalfit/R/summaryfactorlist.R | 2 finalfit-0.8.1/finalfit/README.md | 4 + finalfit-0.8.1/finalfit/build/vignette.rds |binary finalfit-0.8.1/finalfit/inst/doc/finalfit_basics.html | 17 +++-- finalfit-0.8.1/finalfit/man/boot_compare.Rd |only finalfit-0.8.1/finalfit/man/boot_predict.Rd |only finalfit-0.8.1/finalfit/man/extract_variable_label.Rd |only finalfit-0.8.1/finalfit/man/ff_glimpse.Rd |only finalfit-0.8.1/finalfit/man/ff_merge.Rd |only finalfit-0.8.1/finalfit/man/ff_missing.Rd |only finalfit-0.8.1/finalfit/man/ff_newdata.Rd |only finalfit-0.8.1/finalfit/man/finalfit-package.Rd | 10 +++ finalfit-0.8.1/finalfit/man/summary_factorlist.Rd | 2 33 files changed, 106 insertions(+), 38 deletions(-)
Title: Tools for Model Specification in the Latent Variable Framework
Description: Tools for model specification in the latent variable framework
(add-on to the 'lava' package). The package contains three main functionalities:
Wald tests/F-tests with improved control of the type 1 error in small samples,
adjustment for multiple comparisons when searching for local dependencies,
and adjustment for multiple comparisons when doing inference for multiple latent variable models.
Author: Brice Ozenne [aut, cre]
Maintainer: Brice Ozenne <brice.ozenne@orange.fr>
Diff between lavaSearch2 versions 1.3.3 dated 2018-04-17 and 1.3.5 dated 2018-07-17
DESCRIPTION | 18 MD5 | 110 +-- NAMESPACE | 5 NEWS | 16 R/IntDensTri.R | 30 R/autoplot.calibrateType1.R | 74 -- R/calcDistMax.R | 146 +-- R/calibrateType1.R | 660 ++++++++++++------ R/compare2.R | 151 +++- R/compareSearch.R | 12 R/createContrast.R | 51 + R/estimate2.R | 13 R/getVarCov2.R | 59 - R/iid2.R | 2 R/iidJack.R | 116 +-- R/lavaSearch2-package.R | 3 R/modelsearch2.R | 70 + R/modelsearchLR.R | 6 R/modelsearchMax.R | 111 +-- R/multcomp.R | 85 +- R/nobs.R |only R/print.modelsearch2.R | 6 R/residuals2.R | 15 R/sCorrect.R | 14 R/summary.calibrateType1.R |only R/summary.glht2.R |only R/summary.modelsearch2.R | 10 R/summary2.R | 71 + R/utils-nlme.R | 17 inst/todo.org | 1 inst/vignettes |only man/autoplot_calibrateType1.Rd | 4 man/calcDistMax.Rd | 13 man/calibrateType1.Rd | 67 + man/compare2.Rd | 26 man/createContrast.Rd | 21 man/dfSigma.Rd |only man/dfSigmaRobust.Rd |only man/glht2.Rd | 13 man/iid2.Rd | 22 man/iidJack.Rd | 12 man/modelsearch2.Rd | 2 man/modelsearchLR.Rd | 2 man/modelsearchMax.Rd | 4 man/sCorrect.Rd | 4 man/summary.calibrateType1.Rd |only man/summary.modelsearch2.Rd | 4 man/summary2.Rd | 19 tests/testthat/test1-Utils-nlme.R | 27 tests/testthat/test1-adjustMoment.R | 5 tests/testthat/test1-calibrateType1.R | 45 + tests/testthat/test1-cluster-lava.R |only tests/testthat/test1-sCorrect-smallSampleCorrection.R | 4 tests/testthat/test1-sCorrect-validObjects.R | 11 tests/testthat/test2-modelsearch2.R | 10 tests/testthat/test3-multcomp.R | 42 - 56 files changed, 1404 insertions(+), 825 deletions(-)
Title: Convert Statistical Analysis Objects into Tidy Tibbles
Description: Summarizes key information about statistical objects in tidy
tibbles. This makes it easy to report results, create plots and consistently
work with large numbers of models at once. Broom provides three verbs that
each provide different types of information about a model. tidy()
summarizes information about model components such as coefficients of
a regression. glance() reports information about an entire model, such as
goodness of fit measures like AIC and BIC. augment() adds information
about individual observations to a dataset, such as fitted values or
influence measures.
Author: David Robinson [aut, cre],
Alex Hayes [aut],
Matthieu Gomez [ctb],
Boris Demeshev [ctb],
Dieter Menne [ctb],
Benjamin Nutter [ctb],
Luke Johnston [ctb],
Ben Bolker [ctb],
Francois Briatte [ctb],
Jeffrey Arnold [ctb],
Jonah Gabry [ctb],
Luciano Selzer [ctb],
Gavin Simpson [ctb],
Jens Preussner [ctb],
Jay Hesselberth [ctb],
Hadley Wickham [ctb],
Matthew Lincoln [ctb],
Alessandro Gasparini [ctb],
Lukasz Komsta [ctb],
Frederick Novometsky [ctb],
Wilson Freitas [ctb],
Michelle Evans [ctb],
Jason Cory Brunson [ctb],
Simon Jackson [ctb],
Ben Whalley [ctb],
Michael Kuehn [ctb],
Jorge Cimentada [ctb],
Erle Holgersen [ctb],
Karl Dunkle Werner [ctb]
Maintainer: David Robinson <admiral.david@gmail.com>
Diff between broom versions 0.4.5 dated 2018-07-03 and 0.5.0 dated 2018-07-17
broom-0.4.5/broom/R/anova_tidiers.R |only broom-0.4.5/broom/R/arima_tidiers.R |only broom-0.4.5/broom/R/auc_tidiers.R |only broom-0.4.5/broom/R/augment.R |only broom-0.4.5/broom/R/betareg_tidiers.R |only broom-0.4.5/broom/R/biglm_tidiers.R |only broom-0.4.5/broom/R/bingroup_tidiers.R |only broom-0.4.5/broom/R/boot_tidiers.R |only broom-0.4.5/broom/R/brms_tidiers.R |only broom-0.4.5/broom/R/btergm_tidiers.R |only broom-0.4.5/broom/R/data.frame_tidiers.R |only broom-0.4.5/broom/R/decompose_tidiers.R |only broom-0.4.5/broom/R/emmeans_tidiers.R |only broom-0.4.5/broom/R/ergm_tidiers.R |only broom-0.4.5/broom/R/extras.R |only broom-0.4.5/broom/R/felm_tidiers.R |only broom-0.4.5/broom/R/fitdistr_tidiers.R |only broom-0.4.5/broom/R/gam_tidiers.R |only broom-0.4.5/broom/R/gamlss_tidiers.R |only broom-0.4.5/broom/R/geeglm_tidiers.R |only broom-0.4.5/broom/R/glance.R |only broom-0.4.5/broom/R/glm_tidiers.R |only broom-0.4.5/broom/R/glmnet_tidiers.R |only broom-0.4.5/broom/R/globals.R |only broom-0.4.5/broom/R/gmm_tidiers.R |only broom-0.4.5/broom/R/htest_tidiers.R |only broom-0.4.5/broom/R/ivreg_tidiers.R |only broom-0.4.5/broom/R/kde_tidiers.R |only broom-0.4.5/broom/R/kmeans_tidiers.R |only broom-0.4.5/broom/R/list_tidiers.R |only broom-0.4.5/broom/R/lm_tidiers.R |only broom-0.4.5/broom/R/lme4_tidiers.R |only broom-0.4.5/broom/R/lmodel2_tidiers.R |only broom-0.4.5/broom/R/lmtest_tidiers.R |only broom-0.4.5/broom/R/loess_tidiers.R |only broom-0.4.5/broom/R/map_tidiers.R |only broom-0.4.5/broom/R/matrix_tidiers.R |only broom-0.4.5/broom/R/mclust_tidiers.R |only broom-0.4.5/broom/R/mcmc_tidiers.R |only broom-0.4.5/broom/R/mle2_tidiers.R |only broom-0.4.5/broom/R/muhaz_tidiers.R |only broom-0.4.5/broom/R/multcomp_tidiers.R |only broom-0.4.5/broom/R/multinom_tidiers.R |only broom-0.4.5/broom/R/nlme_tidiers.R |only broom-0.4.5/broom/R/nls_tidiers.R |only broom-0.4.5/broom/R/optim_tidiers.R |only broom-0.4.5/broom/R/orcutt_tidiers.R |only broom-0.4.5/broom/R/plm_tidiers.R |only broom-0.4.5/broom/R/polca_tidiers.R |only broom-0.4.5/broom/R/prcomp_tidiers.R |only broom-0.4.5/broom/R/psych_tidiers.R |only broom-0.4.5/broom/R/rcorr_tidiers.R |only broom-0.4.5/broom/R/ridgelm_tidiers.R |only broom-0.4.5/broom/R/rlm_tidiers.R |only broom-0.4.5/broom/R/robust_tidiers.R |only broom-0.4.5/broom/R/rowwise_df_tidiers.R |only broom-0.4.5/broom/R/rq_tidiers.R |only broom-0.4.5/broom/R/rstanarm_tidiers.R |only broom-0.4.5/broom/R/smooth.spline_tidiers.R |only broom-0.4.5/broom/R/sp_tidiers.R |only broom-0.4.5/broom/R/sparse_tidiers.R |only broom-0.4.5/broom/R/speedlm_tidiers.R |only broom-0.4.5/broom/R/stats_tidiers.R |only broom-0.4.5/broom/R/summary_tidiers.R |only broom-0.4.5/broom/R/survival_tidiers.R |only broom-0.4.5/broom/R/svd_tidiers.R |only broom-0.4.5/broom/R/tidy.R |only broom-0.4.5/broom/R/vector_tidiers.R |only broom-0.4.5/broom/R/xyz_tidiers.R |only broom-0.4.5/broom/R/zoo_tidiers.R |only broom-0.4.5/broom/man/Arima_tidiers.Rd |only broom-0.4.5/broom/man/aareg_tidiers.Rd |only broom-0.4.5/broom/man/acf_tidiers.Rd |only broom-0.4.5/broom/man/anova_tidiers.Rd |only broom-0.4.5/broom/man/auc_tidiers.Rd |only broom-0.4.5/broom/man/betareg_tidiers.Rd |only broom-0.4.5/broom/man/biglm_tidiers.Rd |only broom-0.4.5/broom/man/binDesign_tidiers.Rd |only broom-0.4.5/broom/man/binWidth_tidiers.Rd |only broom-0.4.5/broom/man/boot_tidiers.Rd |only broom-0.4.5/broom/man/btergm_tidiers.Rd |only broom-0.4.5/broom/man/cch_tidiers.Rd |only broom-0.4.5/broom/man/compact.Rd |only broom-0.4.5/broom/man/confint.geeglm.Rd |only broom-0.4.5/broom/man/coxph_tidiers.Rd |only broom-0.4.5/broom/man/cv.glmnet_tidiers.Rd |only broom-0.4.5/broom/man/decompose_tidiers.Rd |only broom-0.4.5/broom/man/ergm_tidiers.Rd |only broom-0.4.5/broom/man/felm_tidiers.Rd |only broom-0.4.5/broom/man/fitdistr_tidiers.Rd |only broom-0.4.5/broom/man/gam_tidiers.Rd |only broom-0.4.5/broom/man/gamlss_tidiers.Rd |only broom-0.4.5/broom/man/glm_tidiers.Rd |only 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broom-0.4.5/broom/man/process_ergm.Rd |only broom-0.4.5/broom/man/process_geeglm.Rd |only broom-0.4.5/broom/man/process_lm.Rd |only broom-0.4.5/broom/man/process_rq.Rd |only broom-0.4.5/broom/man/pyears_tidiers.Rd |only broom-0.4.5/broom/man/rcorr_tidiers.Rd |only broom-0.4.5/broom/man/ridgelm_tidiers.Rd |only broom-0.4.5/broom/man/rlm_tidiers.Rd |only broom-0.4.5/broom/man/robust_tidiers.Rd |only broom-0.4.5/broom/man/rq_tidiers.Rd |only broom-0.4.5/broom/man/sexpfit_tidiers.Rd |only broom-0.4.5/broom/man/smooth.spline_tidiers.Rd |only broom-0.4.5/broom/man/speedlm_tidiers.Rd |only broom-0.4.5/broom/man/survdiff_tidiers.Rd |only broom-0.4.5/broom/man/survfit_tidiers.Rd |only broom-0.4.5/broom/man/survreg_tidiers.Rd |only broom-0.4.5/broom/man/svd_tidiers.Rd |only broom-0.4.5/broom/man/tidy.NULL.Rd |only broom-0.4.5/broom/man/tidy.default.Rd |only broom-0.4.5/broom/man/unrowname.Rd |only broom-0.4.5/broom/man/xyz_tidiers.Rd |only broom-0.4.5/broom/man/zoo_tidiers.Rd |only 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broom-0.5.0/broom/vignettes/glossary.Rmd |only broom-0.5.0/broom/vignettes/kmeans.Rmd | 119 +- 573 files changed, 4439 insertions(+), 3969 deletions(-)
Title: Scatter Pie Plot
Description: Creates scatterpie plots, especially useful for plotting pies on a map.
Author: Guangchuang Yu [aut, cre] (<https://orcid.org/0000-0002-6485-8781>)
Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>
Diff between scatterpie versions 0.1.0 dated 2018-04-18 and 0.1.2 dated 2018-07-17
DESCRIPTION | 8 +++---- MD5 | 14 ++++++------ NAMESPACE | 1 NEWS | 10 ++++++++ R/geom_scatterpie.R | 3 +- README.md | 4 +-- build/vignette.rds |binary inst/doc/scatterpie.html | 53 ++++++++++++++++++++++++----------------------- 8 files changed, 54 insertions(+), 39 deletions(-)
Title: Structure for Organizing Monte Carlo Simulation Designs
Description: Provides tools to help safely and efficiently organize Monte Carlo simulations in R.
The package controls the structure and back-end of Monte Carlo simulations
by utilizing a general generate-analyse-summarise strategy. The functions provided control
common simulation issues such as re-simulating non-convergent results, support parallel
back-end and MPI distributed computations, save and restore temporary files,
aggregate results across independent nodes, and provide native support for debugging.
For a pedagogical introduction to the package refer to
Sigal and Chalmers (2016) <doi:10.1080/10691898.2016.1246953>.
Author: Phil Chalmers [aut, cre],
Matthew Sigal [ctb],
Ogreden Oguzhan [ctb]
Maintainer: Phil Chalmers <rphilip.chalmers@gmail.com>
Diff between SimDesign versions 1.10.1 dated 2018-05-19 and 1.11 dated 2018-07-17
DESCRIPTION | 6 +- MD5 | 34 ++++++++-------- NAMESPACE | 1 R/analysis.R | 10 +++- R/functions.R | 15 ++++--- R/runSimulation.R | 61 +++++++++++++++++++++++++----- build/partial.rdb |binary build/vignette.rds |binary inst/doc/Catch_errors.R | 9 ++++ inst/doc/Catch_errors.Rmd | 26 ++++++++++-- inst/doc/Catch_errors.html | 79 ++++++++++++++++++++++++++++++--------- inst/doc/Fixed_obj_fun.html | 6 +- inst/doc/Saving-results.html | 85 ++++++++++++++++++++++++------------------ inst/doc/SimDesign-intro.html | 40 +++++++++++-------- man/SimBoot.Rd | 2 man/runSimulation.Rd | 30 +++++++++++--- tests/tests/test-SimDesign.R | 23 +++++++++-- vignettes/Catch_errors.Rmd | 26 ++++++++++-- 18 files changed, 324 insertions(+), 129 deletions(-)
Title: 'pinp' is not 'PNAS'
Description: A 'PNAS'-alike style for 'rmarkdown', derived from the
'Proceedings of the National Academy of Sciences of the United States
of America' ('PNAS', see <https://www.pnas.org>) 'LaTeX' style, and
adapted for use with 'markdown' and 'pandoc'.
Author: Dirk Eddelbuettel and James Balamuta
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between pinp versions 0.0.5 dated 2018-06-08 and 0.0.6 dated 2018-07-17
ChangeLog | 28 ++++ DESCRIPTION | 8 - MD5 | 24 +-- R/pinp.R | 132 +++++++++++--------- build/vignette.rds |binary inst/NEWS.Rd | 10 + inst/doc/pinp.Rmd | 2 inst/doc/pinp.pdf |binary inst/rmarkdown/templates/pdf/resources/template.tex | 7 - inst/rmarkdown/templates/pdf/skeleton/pinp.cls | 5 inst/rmarkdown/templates/pdf/skeleton/skeleton.Rmd | 3 man/pinp.Rd | 123 ++++++++++-------- vignettes/pinp.Rmd | 2 13 files changed, 213 insertions(+), 131 deletions(-)
Title: Chronomics Analysis Toolkit (CAT): Periodicity Analysis
Description: Calculates auto- and cross-correlation functions and plots an actogram and a smoothing function from a time series to identify and visualize periodic components. Tests presence of anticipated rhythm and estimates rhythm parameters; fits model consisting of multiple rhythmic components to data; performs least squares spectral analysis and other cosinor-based analyses, including population-mean cosinor (PMC) and population-mean cosinor parameter tests (PMCtest).
Author: Cathy Lee Gierke, Ruth Helget, Germaine Cornelissen-Guillaume
Maintainer: Cathy Lee Gierke <leegi001@umn.edu>
Diff between CATkit versions 3.3.2 dated 2018-06-21 and 3.3.3 dated 2018-07-17
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/CATCosinor.R | 9 ++++++--- man/CATparam.Rd | 8 +++++++- man/CATpmc.Rd | 8 +++++++- 5 files changed, 28 insertions(+), 13 deletions(-)