Title: Microplots (Sparklines) in 'LaTeX', 'Word', 'HTML', 'Excel'
Description: The microplot function writes a set of R graphics files to be used as
microplots (sparklines) in tables in either 'LaTeX', 'HTML', 'Word',
or 'Excel' files. For 'LaTeX', we provide methods for the
Hmisc::latex() generic function to construct 'latex' tabular
environments which include the graphs. These can be used directly
with the operating system 'pdflatex' or 'latex' command, or by using
one of 'Sweave', 'knitr', 'rmarkdown', or 'Emacs org-mode' as an
intermediary. For 'MS Word', the msWord() function uses the
'flextable' package to construct 'Word' tables which include the
graphs. There are several distinct approaches for constructing HTML
files. The simplest is to use the msWord() function with argument
filetype="html". Alternatively, use either 'Emacs org-mode' or the
htmlTable::htmlTable() function to construct an 'HTML' file
containing tables which include the graphs. See the documentation
for our as.htmlimg() function. For 'Excel' use on 'Windows', the
file examples/irisExcel.xls includes 'VBA' code which brings the
individual panels into individual cells in the spreadsheet.
Examples in the examples and demo subdirectories are shown with
'lattice' graphics, 'ggplot2' graphics, and 'base' graphics.
Examples for 'LaTeX' include 'Sweave' (both 'LaTeX'-style and
'Noweb'-style), 'knitr', 'emacs org-mode', and 'rmarkdown' input
files and their 'pdf' output files. Examples for 'HTML' include
'org-mode' and 'Rmd' input files and their webarchive 'HTML' output
files. In addition, the as.orgtable() function can display a
data.frame in an 'org-mode' document. The examples for 'MS Word'
(with either filetype="docx" or filetype="html") work with all
operating systems. The package does not require the installation of
'LaTeX' or 'MS Word' to be able to write '.tex' or '.docx' files.
Author: Richard M. Heiberger, with contributions from Karen Byron and Nooreen Dabbish.
Maintainer: Richard M. Heiberger <rmh@temple.edu>
Diff between microplot versions 1.0-40 dated 2018-07-15 and 1.0-41 dated 2018-07-18
DESCRIPTION | 12 MD5 | 22 - NAMESPACE | 7 NEWS | 14 - R/msWord.microplotMatrix.R | 553 ++++++++++++++++++++--------------------- build/partial.rdb |binary demo/AEdotplot.r | 3 demo/LegendrePolynomials.r | 4 demo/tablesPlusGraphicColumn.r | 32 ++ inst/doc/rmhPoster.pdf |binary man/microplot-package.Rd | 2 man/msWord.Rd | 57 ++-- 12 files changed, 369 insertions(+), 337 deletions(-)
Title: A Multiscale Test of Spatial Stationarity for LS2W Processes
Description: Wavelet-based methods for testing stationarity and quadtree segmenting of images, see Taylor et al (2014) <doi:10.1080/00401706.2013.823890>.
Author: Sarah Taylor [aut],
Matt Nunes [aut, cre],
Idris Eckley [ctb, ths]
Maintainer: Matt Nunes <nunesrpackages@gmail.com>
Diff between LS2Wstat versions 2.1 dated 2018-05-21 and 2.1-1 dated 2018-07-18
DESCRIPTION | 14 +++++++------- MD5 | 4 ++-- man/LS2Wstat-package.Rd | 2 +- 3 files changed, 10 insertions(+), 10 deletions(-)
Title: Haar-Fisz Functions for Binomial Data
Description: Binomial Haar-Fisz transforms for Gaussianization as in Nunes and Nason (2009).
Author: Matt Nunes <nunesrpackages@gmail.com>
Maintainer: Matt Nunes <nunesrpackages@gmail.com>
Diff between binhf versions 1.0-2 dated 2018-06-07 and 1.0-3 dated 2018-07-18
DESCRIPTION | 14 +++++++------- MD5 | 8 ++++---- data/chr20.rda |binary data/mhc.rda |binary data/pintens.rda |binary 5 files changed, 11 insertions(+), 11 deletions(-)
Title: A 'robots.txt' Parser and 'Webbot'/'Spider'/'Crawler'
Permissions Checker
Description: Provides functions to download and parse 'robots.txt' files.
Ultimately the package makes it easy to check if bots
(spiders, crawler, scrapers, ...) are allowed to access specific
resources on a domain.
Author: Peter Meissner [aut, cre],
Oliver Keys [ctb],
Rich Fitz John [ctb]
Maintainer: Peter Meissner <retep.meissner@gmail.com>
Diff between robotstxt versions 0.6.0 dated 2018-02-11 and 0.6.2 dated 2018-07-18
DESCRIPTION | 14 +- MD5 | 14 +- NEWS.md | 16 ++ R/get_robotstxt.R | 2 R/get_robotstxts.R | 2 README.md | 272 +++++++++++++++++++++++------------------- build/vignette.rds |binary inst/doc/using_robotstxt.html | 71 +++++----- 8 files changed, 222 insertions(+), 169 deletions(-)
Title: Pipe-Style Interface for 'data.table'
Description: Package provides pipe-style interface for 'data.table'. It preserves all
'data.table' features without significant impact on performance. 'let'
and 'take' functions are simplified interfaces for most common data manipulation
tasks. For example, you can write 'mtcars %>% take(mean(mpg), by = am)' for
aggregation or 'mtcars %>% let(hp_wt = hp/wt, hp_wt_mpg = hp_wt/mpg)' for modification.
Use 'take_if/let_if' for conditional aggregation/modification. 'query_if' function
translates its arguments one-to-one to '[.data.table' method. Additionally there are
some conveniences such as automatic 'data.frame' conversion to 'data.table'.
Author: Gregory Demin [aut, cre]
Maintainer: Gregory Demin <gdemin@gmail.com>
Diff between maditr versions 0.5.1 dated 2018-05-10 and 0.5.2 dated 2018-07-18
DESCRIPTION | 8 MD5 | 37 - NAMESPACE | 1 NEWS | 5 R/dcast.R |only R/let.R | 843 ++++++++++++++++++++------------------- R/maditr.R | 5 R/query.R | 3 R/utils.R | 50 +- build/vignette.rds |binary inst/doc/Introduction.R | 21 inst/doc/Introduction.Rmd | 481 +++++++++++----------- inst/doc/Introduction.html | 776 ++++++++++++++++++++++++----------- man/dcast.Rd |only man/let_if.Rd | 24 - man/query_if.Rd | 3 man/reexports.Rd | 6 tests/testthat/test_dcast_melt.R |only tests/testthat/test_verbs.R | 255 ++++++----- tests/testthat/tests.R | 59 ++ vignettes/Introduction.Rmd | 481 +++++++++++----------- 21 files changed, 1753 insertions(+), 1305 deletions(-)
Title: A Future API for Parallel and Distributed Processing using
'batchtools'
Description: Implementation of the Future API on top of the 'batchtools' package.
This allows you to process futures, as defined by the 'future' package,
in parallel out of the box, not only on your local machine or ad-hoc
cluster of machines, but also via high-performance compute ('HPC') job
schedulers such as 'LSF', 'OpenLava', 'Slurm', 'SGE', and 'TORQUE' / 'PBS',
e.g. 'y <- future.apply::future_lapply(files, FUN = process)'.
Author: Henrik Bengtsson [aut, cre, cph]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between future.batchtools versions 0.7.0 dated 2018-05-06 and 0.7.1 dated 2018-07-18
DESCRIPTION | 8 - MD5 | 51 ++++---- NAMESPACE | 5 NEWS | 19 ++ R/BatchtoolsFuture-class.R | 67 +++++----- build/vignette.rds |binary man/status.BatchtoolsFuture.Rd | 2 tests/BatchtoolsFuture,gc.R | 1 tests/BatchtoolsFuture.R | 12 - tests/BatchtoolsFutureError.R | 11 - tests/batchtools_custom.R | 11 - tests/batchtools_hpc.R | 24 ++- tests/batchtools_interactive.R | 12 - tests/batchtools_local.R | 12 - tests/batchtools_multicore.R | 105 ++++++++-------- tests/demo.R | 11 + tests/dotdotdot.R | 12 + tests/future,labels.R | 12 + tests/future,lazy.R | 8 - tests/globals,formulas.R | 6 tests/globals,manual.R | 10 - tests/globals,subassignment.R | 4 tests/globals,tricky.R | 15 -- tests/incl/start,load-only.R | 11 + tests/plan.R | 5 tests/stdout.R |only tests/zzz,future_lapply.R | 261 ++++++++++++++++++++++------------------- 27 files changed, 381 insertions(+), 314 deletions(-)
More information about future.batchtools at CRAN
Permanent link
Title: Non Linear Time Series Analysis
Description: Models for time series forecasting and causality detection. The main functionalities of this package consist of a neural network Vector Auto-Regressive model, the classical Granger causality test C.W.J.Granger (1980) <doi:10.1016/0165-1889(80)90069-X>, and a non-linear version of it based on feedforward neural networks.
Author: Youssef Hmamouche [aut, cre],
Sylvain Barthelemy [cph]
Maintainer: Youssef Hmamouche <hmamoucheyussef@gmail.com>
Diff between NlinTS versions 1.3.2 dated 2018-03-16 and 1.3.3 dated 2018-07-18
DESCRIPTION | 8 ++++---- MD5 | 28 ++++++++++++++-------------- build/partial.rdb |binary inst/include/CDynamicCausality.h | 2 +- inst/include/CausalityTest.h | 2 +- inst/include/Cmatrixoperations.h | 4 ++-- inst/include/Operateurs.h | 6 +++--- inst/include/Struct.h | 22 +++++++++++----------- inst/include/Tests.h | 4 ++-- src/CDynamicCausality.cpp | 2 +- src/CausalityTest.cpp | 3 ++- src/Cmatrixoperations.cpp | 4 ++-- src/Operateurs.cpp | 6 +++--- src/Struct.cpp | 20 ++++++++++---------- src/Tests.cpp | 4 ++-- 15 files changed, 58 insertions(+), 57 deletions(-)
Title: Nanosecond-Resolution Time for R
Description: Full 64-bit resolution date and time support with resolution up
to nanosecond granularity is provided, with easy transition to and from the
standard 'POSIXct' type.
Author: Dirk Eddelbuettel and Leonardo Silvestri
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between nanotime versions 0.2.1 dated 2018-07-01 and 0.2.2 dated 2018-07-18
ChangeLog | 7 +++++++ DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- inst/NEWS.Rd | 9 ++++++++- inst/unitTests/test_xts.R | 5 +++-- 5 files changed, 26 insertions(+), 11 deletions(-)
Title: Estimate Percentiles from an Ordered Categorical Variable
Description: An implementation of two functions that estimate values for percentiles from an ordered categorical variable as described by Reardon (2011, isbn:978-0-87154-372-1). One function estimates percentile differences from two percentiles while the other returns the values for every percentile from 1 to 100.
Author: Jorge Cimentada [aut, cre]
Maintainer: Jorge Cimentada <cimentadaj@gmail.com>
Diff between perccalc versions 1.0.1 dated 2018-03-30 and 1.0.2 dated 2018-07-18
DESCRIPTION | 7 MD5 | 15 NEWS.md |only R/perc_diff.R | 351 ++++++++++----------- R/perc_dist.R | 276 ++++++++-------- inst/doc/perc_calculator_example.html | 568 +++++++++++++++++++++++----------- inst/doc/perc_warning_example.html | 364 +++++++++++++++++---- man/perc_diff.Rd | 1 tests/testthat/test-perc_funs.R | 130 +++---- 9 files changed, 1067 insertions(+), 645 deletions(-)
Title: Read Data Stored by 'Minitab', 'S', 'SAS', 'SPSS', 'Stata',
'Systat', 'Weka', 'dBase', ...
Description: Reading and writing data stored by some versions of
'Epi Info', 'Minitab', 'S', 'SAS', 'SPSS', 'Stata', 'Systat', 'Weka',
and for reading and writing some 'dBase' files.
Author: R Core Team [aut, cph, cre],
Roger Bivand [ctb, cph],
Vincent J. Carey [ctb, cph],
Saikat DebRoy [ctb, cph],
Stephen Eglen [ctb, cph],
Rajarshi Guha [ctb, cph],
Swetlana Herbrandt [ctb],
Nicholas Lewin-Koh [ctb, cph],
Mark Myatt [ctb, cph],
Ben Pfaff [ctb],
Brian Quistorff [ctb],
Frank Warmerdam [ctb, cph],
Stephen Weigand [ctb, cph],
Free Software Foundation, Inc. [cph]
Maintainer: R Core Team <R-core@R-project.org>
Diff between foreign versions 0.8-70.1 dated 2018-07-13 and 0.8-70.2 dated 2018-07-18
ChangeLog | 5 +++-- DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- src/dbfopen.c | 5 +++-- src/stataread.c | 4 ++-- 5 files changed, 16 insertions(+), 14 deletions(-)
Title: Causal Mediation Analysis Using Weighting Approach
Description: We implement causal mediation analysis using the methods proposed by Hong (2010) and Hong, Deutsch & Hill (2015) <doi:10.3102/1076998615583902>. It allows the estimation and hypothesis testing of causal mediation effects through ratio of mediator probability weights (RMPW). This strategy conveniently relaxes the assumption of no treatment-by-mediator interaction while greatly simplifying the outcome model specification without invoking strong distributional assumptions. We also implement a sensitivity analysis by extending the RMPW method to assess potential bias in the presence of omitted pretreatment or posttreatment covariates. The sensitivity analysis strategy was proposed by Hong, Qin, and Yang (2018) <doi:10.3102/1076998617749561>.
Author: Xu Qin, Guanglei Hong, and Fan Yang
Maintainer: Xu Qin <xuqin@uchicago.edu>
Diff between rmpw versions 0.0.3 dated 2018-01-04 and 0.0.4 dated 2018-07-18
DESCRIPTION | 8 +-- MD5 | 10 ++-- NAMESPACE | 1 R/rmpw.R | 110 +++++++++++++++++++++++++++++++++++++++++++++++++++++- build/partial.rdb |binary man/Riverside.Rd | 34 +++++++++++++++- 6 files changed, 149 insertions(+), 14 deletions(-)
Title: Reverse Engineering Decoupled and Censored Data
Description: An issue occurs when authors do not reveal clear information. Decoupled variables (e.g. separate averages) and numeric censoring (e.g. between ages 10-15) are reoccurring instances found in areas ranging from demographic and epidemiological data to ecological inference problems. Decoupled variables provide no availability for cross tabulations while censoring obscures the true underlying values. The revengc R package was developed to reverse engineer this unclear information that is continually reported by many well-established organizations (e.g. World Health Organization (WHO), Centers for Disease Control and Prevention (CDC), World Bank, and various national censuses). There are two main functions in revengc and both fit data to a Poisson or Quasi-Poisson distribution. The estimated_lambda function takes a univariate censored frequency table and approximates its lambda (average) value. The rec function calculates an uncensored bivariate table from decoupled and summarized arguments.
Author: Samantha Duchscherer [aut, cre],
UT-Battelle, LLC [cph]
Maintainer: Samantha Duchscherer <sam.duchscherer@gmail.com>
Diff between revengc versions 1.0.1 dated 2018-07-17 and 1.0.2 dated 2018-07-18
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- README.md | 2 +- inst/doc/duchscherer-stewart-urban.ltx | 2 +- inst/doc/duchscherer-stewart-urban.pdf |binary vignettes/duchscherer-stewart-urban.ltx | 2 +- 6 files changed, 12 insertions(+), 12 deletions(-)
Title: Common Functionality for the 'dynverse' Packages
Description: Provides common functionality for the 'dynverse' packages.
'dynverse' is created to support the development, execution, and benchmarking of trajectory inference methods.
For more information, check out <https://github.com/dynverse/dynverse>.
Author: Robrecht Cannoodt [aut, cre] (<https://orcid.org/0000-0003-3641-729X>,
rcannood),
Wouter Saelens [aut] (<https://orcid.org/0000-0002-7114-6248>, zouter)
Maintainer: Robrecht Cannoodt <rcannood@gmail.com>
Diff between dynutils versions 0.1.0 dated 2018-06-24 and 1.0.0 dated 2018-07-18
dynutils-0.1.0/dynutils/R/run_until_exit.R |only dynutils-0.1.0/dynutils/man/run_until_exit.Rd |only dynutils-0.1.0/dynutils/tests/testthat/test-run_until_exit.R |only dynutils-1.0.0/dynutils/DESCRIPTION | 23 +- dynutils-1.0.0/dynutils/MD5 | 82 +++++----- dynutils-1.0.0/dynutils/NAMESPACE | 20 ++ dynutils-1.0.0/dynutils/R/RcppExports.R | 28 +++ dynutils-1.0.0/dynutils/R/add_class.R | 4 dynutils-1.0.0/dynutils/R/check_packages.R |only dynutils-1.0.0/dynutils/R/expand_matrix.R | 4 dynutils-1.0.0/dynutils/R/extend_with.R | 11 + dynutils-1.0.0/dynutils/R/inherit_default_params.R | 16 - dynutils-1.0.0/dynutils/R/install_packages.R | 54 +++--- dynutils-1.0.0/dynutils/R/mapdf.R |only dynutils-1.0.0/dynutils/R/package.R | 59 ++++++- dynutils-1.0.0/dynutils/R/pritt.R | 4 dynutils-1.0.0/dynutils/R/random_time_string.R | 3 dynutils-1.0.0/dynutils/R/scaling.R | 8 dynutils-1.0.0/dynutils/R/tibble.R | 58 ++++++- dynutils-1.0.0/dynutils/README.md | 16 - dynutils-1.0.0/dynutils/build |only dynutils-1.0.0/dynutils/inst |only dynutils-1.0.0/dynutils/man/add_class.Rd | 4 dynutils-1.0.0/dynutils/man/check_packages.Rd | 10 - dynutils-1.0.0/dynutils/man/dynutils.Rd | 72 ++++++++ dynutils-1.0.0/dynutils/man/expand_matrix.Rd | 4 dynutils-1.0.0/dynutils/man/extend_with.Rd | 9 + dynutils-1.0.0/dynutils/man/extract_row_to_list.Rd | 13 + dynutils-1.0.0/dynutils/man/inherit_default_params.Rd | 16 - dynutils-1.0.0/dynutils/man/install_packages.Rd | 15 + dynutils-1.0.0/dynutils/man/list_as_tibble.Rd | 18 +- dynutils-1.0.0/dynutils/man/mapdf.Rd |only dynutils-1.0.0/dynutils/man/pritt.Rd | 4 dynutils-1.0.0/dynutils/man/project_to_segments.Rd |only dynutils-1.0.0/dynutils/man/random_time_string.Rd | 3 dynutils-1.0.0/dynutils/man/scale_minmax.Rd | 4 dynutils-1.0.0/dynutils/man/scale_quantile.Rd | 4 dynutils-1.0.0/dynutils/man/scale_uniform.Rd | 2 dynutils-1.0.0/dynutils/man/tibble_as_list.Rd |only dynutils-1.0.0/dynutils/src/RcppExports.cpp | 14 + dynutils-1.0.0/dynutils/src/project_to_segments.cpp |only dynutils-1.0.0/dynutils/tests/testthat/test-calculate_distance.R | 20 ++ dynutils-1.0.0/dynutils/tests/testthat/test-check_packages.R |only dynutils-1.0.0/dynutils/tests/testthat/test-install_packages.R | 67 ++++---- dynutils-1.0.0/dynutils/tests/testthat/test-mapdf.R |only dynutils-1.0.0/dynutils/tests/testthat/test-project_to_segments.R |only dynutils-1.0.0/dynutils/tests/testthat/test-tibble.R | 45 ++++- dynutils-1.0.0/dynutils/vignettes |only 48 files changed, 529 insertions(+), 185 deletions(-)
Title: Detection of Statistically Significant Combinations of SNPs in
Association Mapping
Description: A significant pattern mining-based toolbox for region-based genome-wide association studies and higher-order epistasis analyses, implementing the methods described in Llinares-López et al. (2017) <doi:10.1093/bioinformatics/btx071>.
Author: Felipe Llinares-López [aut, cph],
Laetitia Papaxanthos [aut, cph],
Damian Roqueiro [aut, cph],
Matthew Baker [ctr],
Mikołaj Rybiński [ctr],
Uwe Schmitt [ctr],
Dean Bodenham [aut, cre, cph],
Karsten Borgwardt [aut, fnd, cph]
Maintainer: Dean Bodenham <deanbodenhambsse@gmail.com>
Diff between CASMAP versions 0.5.9 dated 2018-07-05 and 0.6.0 dated 2018-07-18
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- inst/include/Summary.h | 3 ++- src/SignificantFeaturesSearchTaroneCmh.cpp | 3 ++- src/pval.cpp | 10 ++++++++-- 5 files changed, 19 insertions(+), 11 deletions(-)
Title: Variance Component Analysis
Description: ANOVA and REML estimation of linear mixed models is implemented, once following
Searle et al. (1991, ANOVA for unbalanced data), once making use of the 'lme4' package.
The primary objective of this package is to perform a variance component analysis (VCA)
according to CLSI EP05-A3 guideline "Evaluation of Precision of Quantitative Measurement
Procedures" (2014). There are plotting methods for visualization of an experimental design,
plotting random effects and residuals. For ANOVA type estimation two methods for computing
ANOVA mean squares are implemented (SWEEP and quadratic forms). The covariance matrix of
variance components can be derived, which is used in estimating confidence intervals. Linear
hypotheses of fixed effects and LS means can be computed. LS means can be computed at specific
values of covariables and with custom weighting schemes for factor variables. See ?VCA for a
more comprehensive description of the features.
Author: Andre Schuetzenmeister [aut, cre], Florian Dufey [ctb]
Maintainer: Andre Schuetzenmeister <andre.schuetzenmeister@roche.com>
Diff between VCA versions 1.3.3 dated 2017-07-12 and 1.3.4 dated 2018-07-18
DESCRIPTION | 8 MD5 | 21 - NAMESPACE | 1 R/plot.R | 565 ++++++++++++++++++++++++++++++++++-------- R/vca.R | 132 ++++----- inst/ChangeLog.txt | 12 inst/UnitTests/runit.remlMM.R | 11 man/VCA-Package.Rd | 4 man/legend.m.Rd |only man/plotRandVar.Rd | 4 man/varPlot.Rd | 176 ++++++++----- src/vca.c | 3 12 files changed, 674 insertions(+), 263 deletions(-)
Title: Soft Windowing on Linear Regression
Description: The main function in the package utilizes a windowing function in the form of an exponential weighting function to linear models. The bandwidth and sharpness of the window are controlled by two parameters. Then, a series of tests are used to identify the right parameters of the window (see Charles Kervrann (2004) <doi:10.1007/978-3-540-24672-5_11>).
Author: Hamed Haselimashhadi <hamedhm@ebi.ac.uk>
Maintainer: Hamed Haselimashhadi <hamedhm@ebi.ac.uk>
Diff between SmoothWin versions 1.0.0 dated 2017-09-06 and 2.0.0 dated 2018-07-18
SmoothWin-1.0.0/SmoothWin/man/penCPD.Rd |only SmoothWin-1.0.0/SmoothWin/man/scale21.Rd |only SmoothWin-2.0.0/SmoothWin/DESCRIPTION | 16 - SmoothWin-2.0.0/SmoothWin/MD5 | 16 - SmoothWin-2.0.0/SmoothWin/NAMESPACE | 9 SmoothWin-2.0.0/SmoothWin/R/GridSearchModel.R |only SmoothWin-2.0.0/SmoothWin/R/auxFuncs.R | 219 ++++++-------- SmoothWin-2.0.0/SmoothWin/R/main.R | 366 ++++++++++-------------- SmoothWin-2.0.0/SmoothWin/man/SmoothWin.Rd | 275 ++++++++++++------ SmoothWin-2.0.0/SmoothWin/man/expWeight.Rd | 49 ++- SmoothWin-2.0.0/SmoothWin/man/plot.SmoothWin.Rd |only 11 files changed, 503 insertions(+), 447 deletions(-)
Title: Wavelet Lifting Estimators of the Hurst Exponent for Regularly
and Irregularly Sampled Time Series
Description: Implementations of Hurst exponent estimators based on the relationship between wavelet lifting scales and wavelet energy of Knight et al (2017) <doi:10.1007/s11222-016-9698-2>.
Author: Marina Knight [aut],
Guy Nason [ctb],
Matt Nunes [aut, cre]
Maintainer: Matt Nunes <nunesrpackages@gmail.com>
Diff between liftLRD versions 1.0-7 dated 2018-05-22 and 1.0-8 dated 2018-07-18
DESCRIPTION | 14 +++++++------- MD5 | 4 ++-- man/liftLRD-package.Rd | 2 +- 3 files changed, 10 insertions(+), 10 deletions(-)
Title: Complex-Valued Wavelet Lifting for Univariate and Bivariate Time
Series Analysis
Description: Implementations of recent complex-valued wavelet spectral procedures for analysis of irregularly sampled signals, see Hamilton et al (2018) <doi:10.1080/00401706.2017.1281846>.
Author: Jean Hamilton [aut],
Matt Nunes [aut, cre],
Marina Knight [ctb],
Piotr Fryzlewicz [ctb]
Maintainer: Matt Nunes <nunesrpackages@gmail.com>
Diff between CNLTtsa versions 0.1 dated 2017-03-08 and 0.1-2 dated 2018-07-18
DESCRIPTION | 21 ++++++++++++--------- MD5 | 28 ++++++++++++++-------------- build/partial.rdb |binary data/Baidu.rda |binary data/Google.rda |binary man/Baidu.Rd | 4 ++-- man/CNLTtsa-package.Rd | 4 ++-- man/Google.Rd | 4 ++-- man/cnlt.biv.Rd | 4 ++-- man/cnlt.spec.Rd | 6 +++--- man/cnlt.univ.Rd | 4 ++-- man/cnltspec.plot.Rd | 4 ++-- man/pre.per.Rd | 6 +++--- man/smooth.over.scale.Rd | 4 ++-- man/smooth.over.time.Rd | 4 ++-- 15 files changed, 48 insertions(+), 45 deletions(-)
Title: Complex-Valued Wavelet Lifting for Signal Denoising
Description: Implementations of recent complex-valued wavelet shrinkage procedures for smoothing irregularly sampled signals, see Hamilton et al (2018) <doi:10.1080/00401706.2017.1281846>.
Author: Matt Nunes [aut, cre],
Marina Knight [aut],
Jean Hamilton [ctb],
Piotr Fryzlewicz [ctb]
Maintainer: Matt Nunes <nunesrpackages@gmail.com>
Diff between CNLTreg versions 0.1 dated 2017-03-04 and 0.1-2 dated 2018-07-18
DESCRIPTION | 19 +++++++++++-------- MD5 | 22 +++++++++++----------- R/denoisepermCh.R | 2 +- R/fwtnppermC.R | 2 +- build/partial.rdb |binary man/CNLTreg-package.Rd | 4 ++-- man/cnlt.reg.Rd | 4 ++-- man/denoisepermC.Rd | 6 +++--- man/denoisepermCh.Rd | 4 ++-- man/fwtnppermC.Rd | 8 ++++---- man/mthreshC.Rd | 7 +++---- man/orthpredfilters.Rd | 6 +++--- 12 files changed, 43 insertions(+), 41 deletions(-)
Title: k-Nearest Neighbor Join for Spatial Data
Description: K-nearest neighbor search for projected and non-projected 'sf' spatial layers. Nearest neighbor search uses (1) C implementation of the Vincenty Formula for lon-lat point layers, (2) function nn2() from package 'RANN' for projected point layers, or (3) function st_distance() from package 'sf' for line or polygon layers.
Author: Michael Dorman [aut, cre],
Johnathan Rush [ctb],
Ian Hough [ctb],
Jan Antala [ctb, cph] (Author of C code for Vincenty distance)
Maintainer: Michael Dorman <dorman@post.bgu.ac.il>
Diff between nngeo versions 0.1.8 dated 2018-05-15 and 0.2.0 dated 2018-07-18
DESCRIPTION | 15 +++- LICENSE | 2 MD5 | 23 ++++--- NEWS.md | 10 ++- R/st_connect.R | 126 ++++++++++++++++++++++----------------- inst/doc/intro.R | 2 inst/doc/intro.Rmd | 4 - inst/doc/intro.pdf |binary man/st_connect.Rd | 23 +++---- src/Makevars |only src/Makevars.win |only src/distance.cpp | 2 tests/testthat/test_st_connect.R |only vignettes/intro.Rmd | 4 - 14 files changed, 120 insertions(+), 91 deletions(-)
Title: A Future API for Parallel Processing using 'callr'
Description: Implementation of the Future API on top of the 'callr' package. This allows you to process futures, as defined by the 'future' package, in parallel out of the box, on your local (Linux, macOS, Windows, ...) machine. Contrary to backends relying on the 'parallel' package (e.g. 'future::multisession'), the 'callr' backend provided here can run more than 125 parallel R processes.
Author: Henrik Bengtsson [aut, cre, cph]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between future.callr versions 0.3.0 dated 2018-05-06 and 0.3.1 dated 2018-07-18
DESCRIPTION | 8 ++++---- MD5 | 15 ++++++++------- NAMESPACE | 1 + NEWS | 14 ++++++++++++++ R/CallrFuture-class.R | 33 ++++++++++++++++++++++----------- build/vignette.rds |binary man/await.CallrFuture.Rd | 6 +++--- man/status.CallrFuture.Rd | 1 - tests/stdout.R |only 9 files changed, 52 insertions(+), 26 deletions(-)
Title: Quantile-Quantile Plot Extensions for 'ggplot2'
Description: Extensions of 'ggplot2' Q-Q plot functionalities.
Author: Alexandre Almeida [aut, cre],
Adam Loy [aut],
Heike Hofmann [aut]
Maintainer: Alexandre Almeida <almeida.xan@gmail.com>
Diff between qqplotr versions 0.0.2 dated 2017-12-18 and 0.0.3 dated 2018-07-18
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Title: Simple Tools for Examining and Cleaning Dirty Data
Description: The main janitor functions can: perfectly format data.frame column
names; provide quick counts of variable combinations (i.e., frequency
tables and crosstabs); and isolate duplicate records. Other janitor functions
nicely format the tabulation results. These tabulate-and-report functions
approximate popular features of SPSS and Microsoft Excel. This package
follows the principles of the "tidyverse" and works well with the pipe function
%>%. janitor was built with beginning-to-intermediate R users in mind and is
optimized for user-friendliness. Advanced R users can already do everything
covered here, but with janitor they can do it faster and save their thinking for
the fun stuff.
Author: Sam Firke [aut, cre],
Chris Haid [ctb],
Ryan Knight [ctb],
Bill Denney [ctb]
Maintainer: Sam Firke <samuel.firke@gmail.com>
Diff between janitor versions 1.0.0 dated 2018-03-22 and 1.1.0 dated 2018-07-18
DESCRIPTION | 14 LICENSE | 4 MD5 | 175 ++-- NAMESPACE | 65 - NEWS.md | 337 ++++---- R/adorn_crosstab.R | 194 ++-- R/adorn_ns.R | 198 ++--- R/adorn_pct_formatting.R | 104 +- R/adorn_percentages.R | 148 +-- R/adorn_rounding.R | 92 +- R/adorn_title.R | 176 ++-- R/adorn_totals.R | 232 ++--- R/as_and_untabyl.R | 174 ++-- R/clean_names.R | 224 ++--- R/convert_to_NA.R | 92 +- R/crosstab.R | 256 +++--- R/excel_dates.R | 104 +- R/get_dupes.R | 132 +-- R/get_level_groups.R | 56 - R/janitor.R | 61 - R/janitor_deprecated.R | 26 R/print_tabyl.R | 10 R/remove_empties.R | 134 +-- R/round_half_up.R | 48 - R/row_to_names.R |only R/tabyl.R | 550 +++++++------- R/top_levels.R | 120 +-- R/use_first_valid_of.R | 160 ++-- R/utils.R | 32 README.md | 452 +++++------ build/vignette.rds |binary inst/doc/introduction.R | 96 +- inst/doc/introduction.Rmd | 242 +++--- inst/doc/introduction.html | 308 +++---- inst/doc/janitor.R | 110 +- inst/doc/janitor.Rmd | 276 +++---- inst/doc/janitor.html | 899 ++++------------------ inst/doc/tabyls.R | 186 ++-- inst/doc/tabyls.Rmd | 418 +++++----- inst/doc/tabyls.html | 1139 +++++++---------------------- man/add_totals_col.Rd | 38 man/add_totals_row.Rd | 42 - man/adorn_crosstab.Rd | 56 - man/adorn_ns.Rd | 58 - man/adorn_pct_formatting.Rd | 62 - man/adorn_percentages.Rd | 66 - man/adorn_rounding.Rd | 82 +- man/adorn_title.Rd | 74 - man/adorn_totals.Rd | 56 - man/as_tabyl.Rd | 76 - man/clean_names.Rd | 98 +- man/convert_to_NA.Rd | 52 - man/crosstab.Rd | 68 - man/excel_numeric_to_date.Rd | 69 + man/get_dupes.Rd | 50 - man/janitor.Rd | 68 - man/janitor_deprecated.Rd | 30 man/pipe.Rd | 34 man/remove_empty.Rd | 46 - man/remove_empty_cols.Rd | 44 - man/remove_empty_rows.Rd | 42 - man/round_half_up.Rd | 50 - man/row_to_names.Rd |only man/tabyl.Rd | 120 +-- man/top_levels.Rd | 48 - man/untabyl.Rd | 48 - man/use_first_valid_of.Rd | 52 - tests/testthat.R | 8 tests/testthat/test-add-totals.R | 564 +++++++------- tests/testthat/test-adorn-crosstab.R | 332 ++++---- tests/testthat/test-adorn-ns.R | 324 ++++---- tests/testthat/test-adorn-pct-formatting.R | 312 +++---- tests/testthat/test-adorn-percentages.R | 314 +++---- tests/testthat/test-adorn-rounding.R | 190 ++-- tests/testthat/test-adorn-title.R | 325 ++++---- tests/testthat/test-clean-NAs.R | 96 +- tests/testthat/test-clean-names.R | 184 ++-- tests/testthat/test-crosstab.R | 314 +++---- tests/testthat/test-date-conversion.R | 64 + tests/testthat/test-get-dupes.R | 78 - tests/testthat/test-get-level-groups.R | 56 - tests/testthat/test-remove-empties.R | 116 +- tests/testthat/test-row-to-names.R |only tests/testthat/test-tabyl-classifiers.R | 142 +-- tests/testthat/test-tabyl.R | 700 ++++++++--------- tests/testthat/test-top-levels.R | 130 +-- tests/testthat/test-use-first-valid-of.R | 170 ++-- tests/testthat/test-utilities.R | 24 vignettes/janitor.Rmd | 276 +++---- vignettes/tabyls.Rmd | 418 +++++----- 90 files changed, 6879 insertions(+), 7831 deletions(-)
Title: API for UK Gas Market Information
Description: Allows users to access live UK gas market information via National Grid's API.
Author: Timothy Wong [aut, cre]
Maintainer: Timothy Wong <timothy.wong@hotmail.co.uk>
Diff between ukgasapi versions 0.13 dated 2015-10-25 and 0.14 dated 2018-07-18
DESCRIPTION | 10 ++++++---- MD5 | 13 +++++++++---- NAMESPACE | 2 +- R/dataItemExplorer.R | 33 ++++++++++++++++----------------- build |only inst |only man/dataItemExplorer.Rd | 23 +++++++++++------------ vignettes |only 8 files changed, 43 insertions(+), 38 deletions(-)
Title: An Interface to the NOAA Operational Model Archive and
Distribution System
Description: An interface to the National Oceanic and Atmospheric Administration's Operational Model Archive and Distribution System (NOMADS, see <http://nomads.ncep.noaa.gov/> for more information) that allows R users to quickly and efficiently download global and regional weather model data for processing. rNOMADS currently supports a variety of models ranging from global weather data to an altitude of over 40 km, to high resolution regional weather models, to wave and sea ice models. It can also retrieve archived NOMADS models. rNOMADS can retrieve binary data in grib format as well as import ascii data directly into R by interfacing with the GrADS-DODS system.
Author: Daniel C. Bowman [aut, cre]
Maintainer: Daniel C. Bowman <danny.c.bowman@gmail.com>
Diff between rNOMADS versions 2.3.9 dated 2018-01-14 and 2.3.10 dated 2018-07-18
DESCRIPTION | 10 +++++----- MD5 | 6 +++--- NEWS | 2 +- R/ReadGrib.R | 17 ++++++++++------- 4 files changed, 19 insertions(+), 16 deletions(-)
Title: Estimated Marginal Means, aka Least-Squares Means
Description: Obtain estimated marginal means (EMMs) for many linear, generalized
linear, and mixed models. Compute contrasts or linear functions of EMMs,
trends, and comparisons of slopes. Plots and compact letter displays.
Least-squares means are discussed, and the term "estimated marginal means"
is suggested, in Searle, Speed, and Milliken (1980) Population marginal means
in the linear model: An alternative to least squares means, The American
Statistician 34(4), 216-221 <doi:10.1080/00031305.1980.10483031>.
Author: Russell Lenth [aut, cre, cph],
Henrik Singmann [ctb],
Jonathon Love [ctb],
Paul Buerkner [ctb],
Maxime Herve [ctb]
Maintainer: Russell Lenth <russell-lenth@uiowa.edu>
Diff between emmeans versions 1.2.2 dated 2018-06-26 and 1.2.3 dated 2018-07-18
emmeans-1.2.2/emmeans/man/cld.emmGrid.Rd |only emmeans-1.2.3/emmeans/DESCRIPTION | 8 emmeans-1.2.3/emmeans/MD5 | 105 ++++++------ emmeans-1.2.3/emmeans/NAMESPACE | 9 - emmeans-1.2.3/emmeans/NEWS.md | 16 + emmeans-1.2.3/emmeans/R/MCMC-support.R | 10 - emmeans-1.2.3/emmeans/R/S4-classes.R | 3 emmeans-1.2.3/emmeans/R/cld-emm.R | 65 +++++-- emmeans-1.2.3/emmeans/R/datasets.R | 4 emmeans-1.2.3/emmeans/R/emm-contr.R | 2 emmeans-1.2.3/emmeans/R/emm-list.R | 11 - emmeans-1.2.3/emmeans/R/emmGrid-methods.R | 2 emmeans-1.2.3/emmeans/R/emmeans-package.R | 8 emmeans-1.2.3/emmeans/R/emmeans.R | 4 emmeans-1.2.3/emmeans/R/glht-support.R | 16 + emmeans-1.2.3/emmeans/R/helpers.R | 2 emmeans-1.2.3/emmeans/R/ref-grid.R | 12 + emmeans-1.2.3/emmeans/R/zzz.R | 49 ++++- emmeans-1.2.3/emmeans/inst/doc/FAQs.Rmd | 8 emmeans-1.2.3/emmeans/inst/doc/FAQs.html | 9 - emmeans-1.2.3/emmeans/inst/doc/basics.R | 18 ++ emmeans-1.2.3/emmeans/inst/doc/basics.Rmd | 43 ++++ emmeans-1.2.3/emmeans/inst/doc/basics.html | 52 +++++ emmeans-1.2.3/emmeans/inst/doc/comparisons.R | 2 emmeans-1.2.3/emmeans/inst/doc/comparisons.Rmd | 8 emmeans-1.2.3/emmeans/inst/doc/comparisons.html | 11 - emmeans-1.2.3/emmeans/inst/doc/confidence-intervals.html | 6 emmeans-1.2.3/emmeans/inst/doc/interactions.html | 18 +- emmeans-1.2.3/emmeans/inst/doc/messy-data.html | 4 emmeans-1.2.3/emmeans/inst/doc/models.html | 4 emmeans-1.2.3/emmeans/inst/doc/sophisticated.html | 6 emmeans-1.2.3/emmeans/inst/doc/transformations.html | 4 emmeans-1.2.3/emmeans/inst/doc/transition-from-lsmeans.html | 4 emmeans-1.2.3/emmeans/inst/doc/utilities.html | 22 +- emmeans-1.2.3/emmeans/inst/doc/vignette-topics.Rmd | 18 +- emmeans-1.2.3/emmeans/inst/doc/vignette-topics.html | 23 +- emmeans-1.2.3/emmeans/inst/doc/xtending.Rmd | 85 +++++---- emmeans-1.2.3/emmeans/inst/doc/xtending.html | 56 +++--- emmeans-1.2.3/emmeans/man/CLD.emmGrid.Rd |only emmeans-1.2.3/emmeans/man/emmGrid-class.Rd | 3 emmeans-1.2.3/emmeans/man/emm_list-object.Rd | 4 emmeans-1.2.3/emmeans/man/emmc-functions.Rd | 2 emmeans-1.2.3/emmeans/man/emmeans-package.Rd | 8 emmeans-1.2.3/emmeans/man/emmeans.Rd | 2 emmeans-1.2.3/emmeans/man/glht-support.Rd | 9 - emmeans-1.2.3/emmeans/man/hpd.summary.Rd | 3 emmeans-1.2.3/emmeans/man/nutrition.Rd | 4 emmeans-1.2.3/emmeans/man/old.cld.Rd |only emmeans-1.2.3/emmeans/man/ref_grid.Rd | 14 + emmeans-1.2.3/emmeans/man/update.emmGrid.Rd | 2 emmeans-1.2.3/emmeans/vignettes/FAQs.Rmd | 8 emmeans-1.2.3/emmeans/vignettes/basics.Rmd | 43 ++++ emmeans-1.2.3/emmeans/vignettes/comparisons.Rmd | 8 emmeans-1.2.3/emmeans/vignettes/vignette-topics.Rmd | 18 +- emmeans-1.2.3/emmeans/vignettes/xtending.Rmd | 85 +++++---- 55 files changed, 634 insertions(+), 306 deletions(-)