Title: Noncompartmental Analysis for Pharmacokinetic Data
Description: Conduct a noncompartmental analysis as closely as possible to the most widely used commercial software for pharmacokinetic analysis, i.e. 'Phoenix(R) WinNonlin(R)' <https://www.certara.com/software/pkpd-modeling-and-simulation/phoenix-winnonlin/>.
Some features are
1) Use of CDISC SDTM terms
2) Automatic slope selection with the same criterion of WinNonlin(R)
3) Supporting both 'linear-up linear-down' and 'linear-up log-down' method
4) Interval(partial) AUCs with 'linear' or 'log' interpolation method
* Reference: Gabrielsson J, Weiner D. Pharmacokinetic and Pharmacodynamic Data Analysis - Concepts and Applications. 5th ed. 2016. (ISBN:9198299107).
Author: Kyun-Seop Bae [aut]
Maintainer: Kyun-Seop Bae <k@acr.kr>
Diff between NonCompart versions 0.4.3 dated 2018-06-21 and 0.4.4 dated 2018-07-19
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/tblNCA.R | 9 +++++---- inst/NEWS.Rd | 5 +++++ inst/doc/NonCompart-manual.pdf |binary 5 files changed, 18 insertions(+), 12 deletions(-)
Title: Noncompartmental Analysis for Pharmacokinetic Report
Description: Conduct a noncompartmental analysis as closely as possible to the most widely used commercial software for pharmacokinetic analysis, i.e. 'Phoenix(R) WinNonlin(R)' <https://www.certara.com/software/pkpd-modeling-and-simulation/phoenix-winnonlin/>.
Some features are
1) CDISC SDTM terms
2) Automatic slope selection with the same criterion of WinNonlin(R)
3) Supporting both 'linear-up linear-down' and 'linear-up log-down' method
4) Interval(partial) AUCs with 'linear' or 'log' interpolation method
5) Produce pdf, rtf, text report files.
* Reference: Gabrielsson J, Weiner D. Pharmacokinetic and Pharmacodynamic Data Analysis - Concepts and Applications. 5th ed. 2016. (ISBN:9198299107).
Author: Kyun-Seop Bae [aut]
Maintainer: Kyun-Seop Bae <k@acr.kr>
Diff between ncar versions 0.4.0 dated 2018-06-20 and 0.4.1 dated 2018-07-19
DESCRIPTION | 6 +- MD5 | 16 +++--- R/pdfNCA.R | 110 +++++++++++++++++++++++++++-------------------- R/rtfNCA.R | 68 ++++++++++++++++++----------- inst/NEWS.Rd | 6 ++ inst/doc/ncar-manual.pdf |binary man/ncar-package.Rd | 19 +++++--- man/pdfNCA.Rd | 10 ++-- man/rtfNCA.Rd | 10 ++-- 9 files changed, 148 insertions(+), 97 deletions(-)
Title: TK Rplot
Description: Simple mechanism for placing R graphics in a Tk widget.
Author: Luke Tierney <luke-tierney@uiowa.edu>
Maintainer: Luke Tierney <luke-tierney@uiowa.edu>
Diff between tkrplot versions 0.0-23 dated 2011-11-19 and 0.0-24 dated 2018-07-19
DESCRIPTION | 13 +++++++------ MD5 | 6 +++--- NAMESPACE | 4 ++++ src/tcltkimg.c | 7 +++++++ 4 files changed, 21 insertions(+), 9 deletions(-)
Title: 'IUCN' Red List Client
Description: 'IUCN' Red List (<http://apiv3.iucnredlist.org/api/v3/docs>) client.
The 'IUCN' Red List is a global list of threatened and endangered species.
Functions cover all of the Red List 'API' routes. An 'API' key is required.
Author: Scott Chamberlain [aut, cre],
rOpenSci [fnd] (https://ropensci.org/),
Maëlle Salmon [ctb]
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between rredlist versions 0.4.0 dated 2017-08-26 and 0.5.0 dated 2018-07-19
DESCRIPTION | 28 +++++-- MD5 | 133 ++++++++++++++++++++++++---------- NAMESPACE | 3 NEWS.md | 16 ++++ R/rl_comp_groups.R |only R/rl_key.R |only R/rl_sp.R | 54 ++++++++++++- R/rredlist-package.R | 8 +- README.md | 70 ++++++++++++----- man/rl_common_names.Rd | 3 man/rl_comp_groups.Rd |only man/rl_countries.Rd | 3 man/rl_growth_forms.Rd | 3 man/rl_habitats.Rd | 3 man/rl_history.Rd | 3 man/rl_measures.Rd | 3 man/rl_narrative.Rd | 3 man/rl_occ_country.Rd | 3 man/rl_regions.Rd | 3 man/rl_search.Rd | 3 man/rl_sp.Rd | 30 ++++++- man/rl_sp_category.Rd | 3 man/rl_sp_citation.Rd | 3 man/rl_sp_count.Rd | 3 man/rl_sp_country.Rd | 3 man/rl_synonyms.Rd | 3 man/rl_threats.Rd | 3 man/rl_use_iucn.Rd |only man/rredlist-package.Rd | 10 ++ tests/fixtures |only tests/testthat/helper-rredlist.R |only tests/testthat/test-fail-well.R | 30 +++++-- tests/testthat/test-rl_citation.R | 4 - tests/testthat/test-rl_common_names.R | 42 ++++++---- tests/testthat/test-rl_countries.R | 32 ++++---- tests/testthat/test-rl_growth_forms.R | 52 +++++++------ tests/testthat/test-rl_habitat.R | 54 +++++++------ tests/testthat/test-rl_history.R | 75 ++++++++++--------- tests/testthat/test-rl_key.R |only tests/testthat/test-rl_measures.R | 52 +++++++------ tests/testthat/test-rl_narrative.R | 54 +++++++------ tests/testthat/test-rl_search.R | 52 +++++++------ tests/testthat/test-rl_sp_category.R | 64 +++++++++------- tests/testthat/test-rl_synonyms.R | 61 ++++++++------- tests/testthat/test-rl_threats.R | 53 +++++++------ tests/testthat/test-rl_version.R | 8 +- 46 files changed, 653 insertions(+), 380 deletions(-)
Title: Basic Robust Statistics
Description: "Essential" Robust Statistics.
Tools allowing to analyze data with robust methods. This includes
regression methodology including model selections and multivariate
statistics where we strive to cover the book "Robust Statistics,
Theory and Methods" by 'Maronna, Martin and Yohai'; Wiley 2006.
Author: Martin Maechler [aut, cre],
Peter Rousseeuw [ctb] (Qn and Sn),
Christophe Croux [ctb] (Qn and Sn),
Valentin Todorov [aut] (most robust Cov),
Andreas Ruckstuhl [aut] (nlrob, anova, glmrob),
Matias Salibian-Barrera [aut] (lmrob orig.),
Tobias Verbeke [ctb, fnd] (mc, adjbox),
Manuel Koller [aut] (mc, lmrob, psi-func.),
Eduardo L. T. Conceicao [aut] (MM-, tau-, CM-, and MTL- nlrob),
Maria Anna di Palma [ctb] (initial version of Comedian)
Maintainer: Martin Maechler <maechler@stat.math.ethz.ch>
Diff between robustbase versions 0.93-1 dated 2018-06-23 and 0.93-1.1 dated 2018-07-19
DESCRIPTION | 14 MD5 | 68 build/partial.rdb |binary build/vignette.rds |binary inst/NEWS.Rd | 12 inst/doc/fastMcd-kmini.R | 2 inst/doc/fastMcd-kmini.pdf |binary inst/doc/lmrob_simulation.R | 2 inst/doc/lmrob_simulation.pdf | 3426 ++++++++++++++--------------- inst/doc/psi_functions.R | 2 inst/doc/psi_functions.pdf | 97 src/robustbase.h | 2 vignettes/plot-fig-AdB2-1.pdf |binary vignettes/plot-fig-Mscale-all.pdf |binary vignettes/plot-fig-Mscale.pdf |binary vignettes/plot-fig-cpr.pdf |binary vignettes/plot-fig-efficiency-all.pdf |binary vignettes/plot-fig-efficiency.pdf |binary vignettes/plot-fig-emp-level.pdf |binary vignettes/plot-fig-example-design.pdf |binary vignettes/plot-fig-lqq-level.pdf |binary vignettes/plot-fig-max-asymptotic-bias.pdf |binary vignettes/plot-fig-meanscale.pdf |binary vignettes/plot-fig-power-1-0_2.pdf |binary vignettes/plot-fig-power-1-0_4.pdf |binary vignettes/plot-fig-power-1-0_6.pdf |binary vignettes/plot-fig-power-1-0_8.pdf |binary vignettes/plot-fig-power-1-1.pdf |binary vignettes/plot-fig-pred-points.pdf |binary vignettes/plot-fig-psi-functions.pdf |binary vignettes/plot-fig-qscale-all.pdf |binary vignettes/plot-fig-qscale.pdf |binary vignettes/plot-fig-sdAdB2-1.pdf |binary vignettes/plot-fig-sdscale-1.pdf |binary vignettes/plot-fig-sdscale-all.pdf |binary 35 files changed, 1867 insertions(+), 1758 deletions(-)
Title: Parallel Programming Tools for 'Rcpp'
Description: High level functions for parallel programming with 'Rcpp'.
For example, the 'parallelFor()' function can be used to convert the work of
a standard serial "for" loop into a parallel one and the 'parallelReduce()'
function can be used for accumulating aggregate or other values.
Author: JJ Allaire [aut],
Romain Francois [aut, cph],
Kevin Ushey [aut, cre],
Gregory Vandenbrouck [aut],
Marcus Geelnard [aut, cph] (TinyThread library,
http://tinythreadpp.bitsnbites.eu/),
RStudio [cph],
Intel [aut, cph] (Intel TBB library,
https://www.threadingbuildingblocks.org/),
Microsoft [cph]
Maintainer: Kevin Ushey <kevin@rstudio.com>
Diff between RcppParallel versions 4.4.0 dated 2018-03-02 and 4.4.1 dated 2018-07-19
DESCRIPTION | 6 +- MD5 | 26 ++++----- inst/NEWS | 6 ++ inst/include/tbb/concurrent_hash_map.h | 2 src/Makevars.in | 21 ++++++- src/tbb/build/version_info_windows.js | 1 src/tbb/build/windows.gcc.inc | 8 ++ src/tbb/build/windows.inc | 2 src/tbb/include/tbb/concurrent_hash_map.h | 2 src/tbb/src/tbb/concurrent_queue.cpp | 2 src/tbb/src/tbb/dynamic_link.cpp | 2 src/tbb/src/tbb/tools_api/ittnotify_config.h | 2 src/tbb/src/tbbmalloc/proxy.cpp | 8 +- tools/config/configure.R | 74 +++++++++++++++++++++------ 14 files changed, 116 insertions(+), 46 deletions(-)
Title: Nonlocal Prior Based Iterative SNP Selection Tool for
Genome-Wide Association Studies
Description: Performs variable selection with data from Genome-wide association studies (GWAS) combining, in an iterative variable selection framework, the computational efficiency of the screen-and-select approach based on some association learning and the parsimonious uncertainty quantification provided by the use of nonlocal priors, as described in Sanyal et al. (2018).
Author: Nilotpal Sanyal [aut, cre]
Maintainer: Nilotpal Sanyal <nilotpal.sanyal@gmail.com>
Diff between GWASinlps versions 1.1 dated 2018-02-02 and 1.2 dated 2018-07-19
ChangeLog | 12 ++- DESCRIPTION | 16 ++-- MD5 | 16 ++-- NAMESPACE | 3 R/GWASinlps.R | 186 ++++++++++++++++++++++++++++++++++------------- R/nlpsLM.R | 1 man/GWASinlps-package.Rd | 8 +- man/GWASinlps.Rd | 22 +++-- man/nlpsLM.rd | 6 - 9 files changed, 187 insertions(+), 83 deletions(-)
Title: Easily Send HTML Email Messages
Description: Compose and send out responsive HTML email messages that render
perfectly across a range of email clients and device sizes. Messages are
composed using 'Markdown' and a text interpolation system that allows for
the injection of evaluated R code within the message body, footer, and
subject line. Helper functions let the user insert embedded images, web
link buttons, and 'ggplot2' plot objects into the message body. Messages
can be sent through an 'SMTP' server or through the 'Mailgun' API service
<http://mailgun.com/>.
Author: Richard Iannone [aut, cre] (<https://orcid.org/0000-0003-3925-190X>)
Maintainer: Richard Iannone <riannone@me.com>
Diff between blastula versions 0.2.0 dated 2018-03-27 and 0.2.1 dated 2018-07-19
DESCRIPTION | 28 ++++---- MD5 | 25 ++++--- NAMESPACE | 5 + NEWS.md | 6 + R/add_ggplot.R | 5 - R/add_image.R | 19 ++++- R/base64.R |only R/compose_email.R | 79 ++++++++++++++++++++---- README.md | 115 +++++++++++++++--------------------- man/add_ggplot.Rd | 2 man/add_image.Rd | 4 - man/compose_email.Rd | 5 + tests/testthat/test-compose_email.R | 63 +++++++++++++++++++ tests/testthat/test-helper_fcns.R | 4 - 14 files changed, 243 insertions(+), 117 deletions(-)
Title: Nonparametric and Stochastic Efficiency and Productivity
Analysis
Description: Provides a variety of tools for nonparametric and parametric efficiency measurement.
Author: Oleg Badunenko [aut, cre],
Yaryna Kolomiytseva [aut],
Pavlo Mozharovskyi [aut]
Maintainer: Oleg Badunenko <oleg.badunenko@port.ac.uk>
Diff between npsf versions 0.3.1 dated 2018-01-17 and 0.4.1 dated 2018-07-19
npsf-0.3.1/npsf/data/banks05.txt |only npsf-0.3.1/npsf/data/ccr81.txt |only npsf-0.3.1/npsf/data/mroz.txt |only npsf-0.3.1/npsf/data/pwt56.txt |only npsf-0.3.1/npsf/data/usmanuf.txt |only npsf-0.4.1/npsf/ChangeLog | 12 npsf-0.4.1/npsf/DESCRIPTION | 8 npsf-0.4.1/npsf/MD5 | 49 npsf-0.4.1/npsf/NAMESPACE | 2 npsf-0.4.1/npsf/R/npsf-internal.R | 2016 +++++++++++++++++++++++++++++++-- npsf-0.4.1/npsf/R/sf.R | 1114 +++++++++++++----- npsf-0.4.1/npsf/R/truncreg.R | 2 npsf-0.4.1/npsf/data/banks00_07.txt.gz |only npsf-0.4.1/npsf/data/banks05.txt.gz |only npsf-0.4.1/npsf/data/ccr81.txt.gz |only npsf-0.4.1/npsf/data/datalist |only npsf-0.4.1/npsf/data/mroz.txt.gz |only npsf-0.4.1/npsf/data/pwt56.txt.gz |only npsf-0.4.1/npsf/data/usmanuf.txt.gz |only npsf-0.4.1/npsf/man/banks00_07.Rd |only npsf-0.4.1/npsf/man/coef.npsf.Rd | 2 npsf-0.4.1/npsf/man/nobs.npsf.Rd | 2 npsf-0.4.1/npsf/man/npsf-package.Rd | 21 npsf-0.4.1/npsf/man/nptestind.Rd | 2 npsf-0.4.1/npsf/man/nptestrts.Rd | 4 npsf-0.4.1/npsf/man/sf.Rd | 395 +++++- npsf-0.4.1/npsf/man/summary.npsf.Rd | 9 npsf-0.4.1/npsf/man/tenonradial.Rd | 2 npsf-0.4.1/npsf/man/teradial.Rd | 2 npsf-0.4.1/npsf/man/teradialbc.Rd | 4 npsf-0.4.1/npsf/man/truncreg.Rd | 36 npsf-0.4.1/npsf/man/vcov.npsf.Rd | 2 32 files changed, 3191 insertions(+), 493 deletions(-)
Title: Succinct and Correct Statistical Summaries for Reports
Description: Succinctly and correctly format statistical summaries of
various models and tests (F-test, Chi-Sq-test, Fisher-test, T-test, and rank-significance). The main purpose is unified reporting and planning
of experimental results, working around issue such as the difficulty of
extracting model summary facts (such as with 'lm'/'glm'). This package also
includes empirical tests, such as bootstrap estimates.
Author: John Mount [aut, cre],
Nina Zumel [aut],
Win-Vector LLC [cph]
Maintainer: John Mount <jmount@win-vector.com>
Diff between sigr versions 0.2.7 dated 2018-07-03 and 0.2.8 dated 2018-07-19
DESCRIPTION | 8 ++-- MD5 | 66 +++++++++++++++++----------------- NEWS.md | 4 ++ R/AUCTest.R | 10 ++--- R/CohenD.R | 2 - R/EmpiricalFns.R | 14 +++---- R/FTest.R | 4 +- R/FisherTest.R | 10 ++--- R/fns.R | 4 +- R/sigr.R | 2 - inst/doc/lmExample.Rmd | 2 - inst/doc/lmExample.html | 6 +-- inst/doc/sigrFormatting.Rmd | 2 - inst/doc/sigrFormatting.html | 6 +-- man/calcAUC.Rd | 4 +- man/estimateDifferenceZeroCrossing.Rd | 2 - man/permTestAUC.Rd | 4 +- man/permutationScoreModel.Rd | 6 +-- man/render.sigr_fishertest.Rd | 4 +- man/render.sigr_permtest.Rd | 2 - man/resampleScoreModel.Rd | 2 - man/resampleScoreModelPair.Rd | 2 - man/resampleTestAUC.Rd | 4 +- man/sigr.Rd | 2 - man/testAUCpair.Rd | 2 - man/wrapCohenD.numeric.Rd | 2 - man/wrapFTest.Rd | 4 +- man/wrapFTestImpl.Rd | 4 +- man/wrapFisherTest.Rd | 4 +- man/wrapFisherTest.data.frame.Rd | 4 +- man/wrapFisherTest.htest.Rd | 4 +- man/wrapFisherTest.table.Rd | 4 +- vignettes/lmExample.Rmd | 2 - vignettes/sigrFormatting.Rmd | 2 - 34 files changed, 104 insertions(+), 100 deletions(-)
Title: Lower Confidence Bounds for Binomial Series System
Description: Calculate lower confidence bounds for binomial series system reliability. The R 'shiny' application, launched by launch_app(), weaves together a workflow of customized simulations and delta coverage calculations to output recommended lower confidence bound methods.
Author: Edward Schuberg
Maintainer: Edward Schuberg <eschu003@ucr.edu>
Diff between serieslcb versions 0.1.0 dated 2018-07-01 and 0.2.0 dated 2018-07-19
DESCRIPTION | 6 +- MD5 | 18 ++++---- R/functions.R | 51 +++++++++++++++++------- inst/app.R | 90 +++++++++++++++++++++++++------------------- man/coit.Rd | 6 ++ man/launch_app.Rd | 7 ++- man/madansky.Rd | 6 ++ man/myhre_rennie1.Rd | 10 +++- man/myhre_rennie2.Rd | 10 +++- man/normal_approximation.Rd | 6 ++ 10 files changed, 135 insertions(+), 75 deletions(-)
Title: Plot 'rpart' Models: An Enhanced Version of 'plot.rpart'
Description: Plot 'rpart' models. Extends plot.rpart() and text.rpart()
in the 'rpart' package.
Author: Stephen Milborrow
Maintainer: Stephen Milborrow <milbo@sonic.net>
Diff between rpart.plot versions 3.0.0 dated 2018-07-12 and 3.0.1 dated 2018-07-19
rpart.plot-3.0.0/rpart.plot/R/rpart.terms.R |only rpart.plot-3.0.1/rpart.plot/DESCRIPTION | 6 rpart.plot-3.0.1/rpart.plot/MD5 | 48 rpart.plot-3.0.1/rpart.plot/NEWS | 16 rpart.plot-3.0.1/rpart.plot/R/as.char.R | 2 rpart.plot-3.0.1/rpart.plot/R/layout.R | 10 rpart.plot-3.0.1/rpart.plot/R/lib.R | 6 rpart.plot-3.0.1/rpart.plot/R/palette.R | 8 rpart.plot-3.0.1/rpart.plot/R/printcall.R | 4 rpart.plot-3.0.1/rpart.plot/R/prp.R | 38 rpart.plot-3.0.1/rpart.plot/R/rpart.model.frame.R |only rpart.plot-3.0.1/rpart.plot/R/rpart.rules.R | 55 rpart.plot-3.0.1/rpart.plot/R/show.prp.palettes.R | 2 rpart.plot-3.0.1/rpart.plot/R/split.labs.R | 19 rpart.plot-3.0.1/rpart.plot/inst/doc/prp.pdf | 834 +++++----- rpart.plot-3.0.1/rpart.plot/inst/slowtests/rpart.report.Rout.save | 7 rpart.plot-3.0.1/rpart.plot/inst/slowtests/test.palette.Rout.save | 11 rpart.plot-3.0.1/rpart.plot/inst/slowtests/test.prp.Rout.save | 10 rpart.plot-3.0.1/rpart.plot/inst/slowtests/test.rpart.plot.Rout.save | 48 rpart.plot-3.0.1/rpart.plot/inst/slowtests/test.rpart.rules.R | 27 rpart.plot-3.0.1/rpart.plot/inst/slowtests/test.rpart.rules.Rout.save | 297 +-- rpart.plot-3.0.1/rpart.plot/man/prp.Rd | 10 rpart.plot-3.0.1/rpart.plot/man/rpart.plot.Rd | 10 rpart.plot-3.0.1/rpart.plot/man/rpart.rules.Rd | 2 rpart.plot-3.0.1/rpart.plot/tests/test.rpart.plot.R | 12 rpart.plot-3.0.1/rpart.plot/tests/test.rpart.plot.Rout.save | 68 26 files changed, 830 insertions(+), 720 deletions(-)
Title: Sampling from Truncated Multivariate Normal and t Distributions
Description: Efficient sampling of truncated multivariate (scale) mixtures of normals under linear inequality constraints is nontrivial due to the analytically intractable normalizing constant. Meanwhile, traditional methods may subject to numerical issues, especially when the dimension is high and dependence is strong. Algorithms proposed by Li and Ghosh (2015) <doi: 10.1080/15598608.2014.996690> are adopted for overcoming difficulties in simulating truncated distributions. Efficient rejection sampling for simulating truncated univariate normal distribution is included in the package, which shows superiority in terms of acceptance rate and numerical stability compared to existing methods and R packages. An efficient function for sampling from truncated multivariate normal distribution subject to convex polytope restriction regions based on Gibbs sampler for conditional truncated univariate distribution is provided. By extending the sampling method, a function for sampling truncated multivariate Student's t distribution is also developed. Moreover, the proposed method and computation remain valid for high dimensional and strong dependence scenarios. Empirical results in Li and Ghosh (2015) <doi: 10.1080/15598608.2014.996690> illustrated the superior performance in terms of various criteria (e.g. mixing and integrated auto-correlation time).
Author: Ting Fung (Ralph) Ma [cre, aut],
Sujit K. Ghosh [aut],
Yifang Li [aut]
Maintainer: Ting Fung (Ralph) Ma <tingfung.ma@wisc.edu>
Diff between tmvmixnorm versions 1.0.1 dated 2018-07-18 and 1.0.2 dated 2018-07-19
DESCRIPTION | 10 +++++----- MD5 | 50 +++++++++++++++++++++++++------------------------- R/dtuvn.R | 4 ++-- R/exp_acc.R | 2 +- R/halfnorm_acc.R | 2 +- R/imp.R | 2 +- R/normal_acc.R | 2 +- R/normal_rejection.R | 2 +- R/ptuvn.R | 8 ++++---- R/rtmvn.R | 16 ++++++++-------- R/rtmvt.R | 12 ++++++------ R/rtuvn.R | 4 ++-- R/unif_acc.R | 2 +- R/unif_rejection.R | 2 +- man/dtuvn.Rd | 4 ++-- man/exp_acc_opt.Rd | 2 +- man/halfnorm_acc.Rd | 2 +- man/imp.Rd | 2 +- man/norm_acc.Rd | 2 +- man/norm_rej.Rd | 2 +- man/ptuvn.Rd | 8 ++++---- man/rtmvn.Rd | 16 ++++++++-------- man/rtmvt.Rd | 12 ++++++------ man/rtuvn.Rd | 4 ++-- man/unif_acc.Rd | 2 +- man/unif_rej.Rd | 2 +- 26 files changed, 88 insertions(+), 88 deletions(-)
Title: Manage Time Series for Official Statistics with R and PostgreSQL
Description: Archive and manage times series data from official statistics. The 'timeseriesdb' package was designed to manage a large catalog of time series from official statistics which are typically published on a monthly, quarterly or yearly basis. Thus timeseriesdb is optimized to handle updates caused by data revision as well as elaborate, multi-lingual meta information.
Author: "Matthias Bannert <bannert@kof.ethz.ch> [aut, cre]"
Maintainer: 'Matthias Bannert' <bannert@kof.ethz.ch>
Diff between timeseriesdb versions 0.2.1 dated 2015-04-04 and 0.4 dated 2018-07-19
timeseriesdb-0.2.1/timeseriesdb/R/dbExplorerUtils.R |only timeseriesdb-0.2.1/timeseriesdb/R/exploreDb.R |only timeseriesdb-0.2.1/timeseriesdb/R/exportTsList.R |only timeseriesdb-0.2.1/timeseriesdb/R/importTsList.R |only timeseriesdb-0.2.1/timeseriesdb/R/plotMethod.R |only timeseriesdb-0.2.1/timeseriesdb/R/quickHandleOps.R |only timeseriesdb-0.2.1/timeseriesdb/R/resolveOverlap.R |only timeseriesdb-0.2.1/timeseriesdb/R/storeTimeseries.R |only timeseriesdb-0.2.1/timeseriesdb/R/zooLikeDataConvert.R |only timeseriesdb-0.2.1/timeseriesdb/README.md |only timeseriesdb-0.2.1/timeseriesdb/inst/sql |only timeseriesdb-0.2.1/timeseriesdb/man/createChoices.Rd |only timeseriesdb-0.2.1/timeseriesdb/man/createUI.Rd |only timeseriesdb-0.2.1/timeseriesdb/man/exploreDb.Rd |only timeseriesdb-0.2.1/timeseriesdb/man/exportTsList.Rd |only timeseriesdb-0.2.1/timeseriesdb/man/importTsList.Rd |only timeseriesdb-0.2.1/timeseriesdb/man/plotMethods.Rd |only timeseriesdb-0.2.1/timeseriesdb/man/quickHandleOps.Rd |only timeseriesdb-0.2.1/timeseriesdb/man/resolveOverlap.Rd |only timeseriesdb-0.2.1/timeseriesdb/man/searchKeys.Rd |only timeseriesdb-0.4/timeseriesdb/DESCRIPTION | 29 timeseriesdb-0.4/timeseriesdb/MD5 | 123 ++- timeseriesdb-0.4/timeseriesdb/NAMESPACE | 47 + timeseriesdb-0.4/timeseriesdb/NEWS | 7 timeseriesdb-0.4/timeseriesdb/R/createHstore.R | 59 + timeseriesdb-0.4/timeseriesdb/R/createTables.R |only timeseriesdb-0.4/timeseriesdb/R/deleteTimeSeries.R | 19 timeseriesdb-0.4/timeseriesdb/R/exportMetaEnv.R |only timeseriesdb-0.4/timeseriesdb/R/getTimeSeriesVintages.R |only timeseriesdb-0.4/timeseriesdb/R/indexToDate.R |only timeseriesdb-0.4/timeseriesdb/R/pgCopyDf.R |only timeseriesdb-0.4/timeseriesdb/R/readTimeseries.R | 227 +++++-- timeseriesdb-0.4/timeseriesdb/R/runDbQuery.R |only timeseriesdb-0.4/timeseriesdb/R/sqlQueries.R |only timeseriesdb-0.4/timeseriesdb/R/storeListChunkWise.R |only timeseriesdb-0.4/timeseriesdb/R/storeMetaChunkWise.R |only timeseriesdb-0.4/timeseriesdb/R/storeMetaInformation.R | 34 - timeseriesdb-0.4/timeseriesdb/R/storeTimeSeries.R |only timeseriesdb-0.4/timeseriesdb/R/transactionUtils.R | 18 timeseriesdb-0.4/timeseriesdb/R/tsSetFunctions.R | 317 ++++++++-- timeseriesdb-0.4/timeseriesdb/R/updateMetaInformation.R |only timeseriesdb-0.4/timeseriesdb/R/utils.R | 140 ++++ timeseriesdb-0.4/timeseriesdb/R/writeLogFile.R |only timeseriesdb-0.4/timeseriesdb/R/zooLikeDateConvert.R |only timeseriesdb-0.4/timeseriesdb/build |only timeseriesdb-0.4/timeseriesdb/inst/doc |only timeseriesdb-0.4/timeseriesdb/inst/hstore_vs_flat_benchmarks.R |only timeseriesdb-0.4/timeseriesdb/man/activateTsSet.Rd | 5 timeseriesdb-0.4/timeseriesdb/man/addKeysToTsSet.Rd |only timeseriesdb-0.4/timeseriesdb/man/addMetaInformation.Rd | 11 timeseriesdb-0.4/timeseriesdb/man/changeTsSetOwner.Rd |only timeseriesdb-0.4/timeseriesdb/man/createConObj.Rd | 9 timeseriesdb-0.4/timeseriesdb/man/createHstore.Rd | 13 timeseriesdb-0.4/timeseriesdb/man/createTable.Rd |only timeseriesdb-0.4/timeseriesdb/man/dbIsValid-methods.Rd | 5 timeseriesdb-0.4/timeseriesdb/man/deactivateTsSet.Rd | 5 timeseriesdb-0.4/timeseriesdb/man/deleteTimeSeries.Rd | 16 timeseriesdb-0.4/timeseriesdb/man/deleteTsSet.Rd |only timeseriesdb-0.4/timeseriesdb/man/exportMetaEnv.Rd |only timeseriesdb-0.4/timeseriesdb/man/getListDepth.Rd | 3 timeseriesdb-0.4/timeseriesdb/man/getMeta.Rd | 7 timeseriesdb-0.4/timeseriesdb/man/getTimeSeriesVintages.Rd |only timeseriesdb-0.4/timeseriesdb/man/indexToDate.Rd |only timeseriesdb-0.4/timeseriesdb/man/joinTsSets.Rd |only timeseriesdb-0.4/timeseriesdb/man/listTsSets.Rd | 3 timeseriesdb-0.4/timeseriesdb/man/loadTsSet.Rd | 3 timeseriesdb-0.4/timeseriesdb/man/overwriteTsSet.Rd |only timeseriesdb-0.4/timeseriesdb/man/pgCopyDf.Rd |only timeseriesdb-0.4/timeseriesdb/man/readMetaInformation.Rd | 3 timeseriesdb-0.4/timeseriesdb/man/readTimeSeries.Rd | 36 - timeseriesdb-0.4/timeseriesdb/man/removeKeysFromTsSet.Rd |only timeseriesdb-0.4/timeseriesdb/man/rmAllBut.Rd |only timeseriesdb-0.4/timeseriesdb/man/runCreateTables.Rd |only timeseriesdb-0.4/timeseriesdb/man/runDbQuery.Rd |only timeseriesdb-0.4/timeseriesdb/man/runUpgradeTables.Rd |only timeseriesdb-0.4/timeseriesdb/man/searchHstore.Rd | 7 timeseriesdb-0.4/timeseriesdb/man/setAttrListWise.Rd | 3 timeseriesdb-0.4/timeseriesdb/man/storeListChunkWise.Rd |only timeseriesdb-0.4/timeseriesdb/man/storeMetaChunkWise.Rd |only timeseriesdb-0.4/timeseriesdb/man/storeMetaInformation.Rd | 3 timeseriesdb-0.4/timeseriesdb/man/storeTimeSeries.Rd | 27 timeseriesdb-0.4/timeseriesdb/man/storeTsSet.Rd | 7 timeseriesdb-0.4/timeseriesdb/man/transactionUtils.Rd | 13 timeseriesdb-0.4/timeseriesdb/man/updateMetaInformation.Rd |only timeseriesdb-0.4/timeseriesdb/man/writeLogFile.Rd |only timeseriesdb-0.4/timeseriesdb/man/zooLikeDateConvert.Rd | 9 timeseriesdb-0.4/timeseriesdb/tests |only timeseriesdb-0.4/timeseriesdb/vignettes |only 88 files changed, 914 insertions(+), 294 deletions(-)
Title: Tables of Descriptive Statistics in HTML
Description: Create HTML tables of descriptive statistics, as one would expect
to see as the first table (i.e. "Table 1") in a medical/epidemiological journal
article.
Author: Benjamin Rich [aut, cre]
Maintainer: Benjamin Rich <mail@benjaminrich.net>
Diff between table1 versions 1.0 dated 2018-04-26 and 1.1 dated 2018-07-19
DESCRIPTION | 13 MD5 | 29 NAMESPACE | 5 NEWS.md | 32 R/eqcut.R |only R/table1.R | 273 +- build/vignette.rds |binary inst/doc/table1-examples.R | 101 inst/doc/table1-examples.Rmd | 281 +- inst/doc/table1-examples.html | 4310 +++++++++++++++++------------------------- inst/table1_defaults_1.0 |only man/eqcut.Rd |only man/knit_print.table1.Rd |only man/print.table1.Rd |only man/stats.default.Rd | 13 man/table1.Rd | 16 vignettes/style.css | 94 vignettes/table1-examples.Rmd | 281 +- 18 files changed, 2565 insertions(+), 2883 deletions(-)
Title: Firth's Bias-Reduced Logistic Regression
Description: Fit a logistic regression model using Firth's bias reduction method, equivalent to penalization of the log-likelihood by the Jeffreys
prior. Confidence intervals for regression coefficients can be computed by penalized profile likelihood. Firth's method was proposed as ideal
solution to the problem of separation in logistic regression. If needed, the bias reduction can be turned off such that ordinary
maximum likelihood logistic regression is obtained.
Author: Georg Heinze [aut, cre],
Meinhard Ploner [aut],
Daniela Dunkler [ctb],
Harry Southworth [ctb]
Maintainer: Georg Heinze <georg.heinze@meduniwien.ac.at>
Diff between logistf versions 1.22 dated 2016-12-19 and 1.23 dated 2018-07-19
logistf-1.22/logistf/R/pool.RR.r |only logistf-1.22/logistf/man/pool.RR.rd |only logistf-1.23/logistf/DESCRIPTION | 8 ++++---- logistf-1.23/logistf/MD5 | 7 +++---- logistf-1.23/logistf/NAMESPACE | 1 - logistf-1.23/logistf/src/init.c |only 6 files changed, 7 insertions(+), 9 deletions(-)
Title: Hybrid Bayesian Networks Using R and JAGS
Description: Facilities for easy implementation of hybrid Bayesian networks
using R. Bayesian networks are directed acyclic graphs representing joint
probability distributions, where each node represents a random variable and
each edge represents conditionality. The full joint distribution is therefore
factorized as a product of conditional densities, where each node is assumed
to be independent of its non-descendents given information on its parent nodes.
Since exact, closed-form algorithms are computationally burdensome for inference
within hybrid networks that contain a combination of continuous and discrete
nodes, particle-based approximation techniques like Markov Chain Monte Carlo
are popular. We provide a user-friendly interface to constructing these networks
and running inference using the 'rjags' package. Econometric analyses (maximum
expected utility under competing policies, value of information) involving
decision and utility nodes are also supported.
Author: Jarrod E. Dalton <daltonj@ccf.org> and Benjamin Nutter
<benjamin.nutter@gmail.com>
Maintainer: Benjamin Nutter <benjamin.nutter@gmail.com>
Diff between HydeNet versions 0.10.7 dated 2018-01-02 and 0.10.8 dated 2018-07-19
DESCRIPTION | 10 +- MD5 | 42 ++++----- NAMESPACE | 3 R/HydeNetwork.R | 98 +++++++++++++++------ R/compileDecisionModel.R | 5 - R/compileJagsModel.R | 10 +- R/cpt.R | 4 R/data.R | 4 R/expectedVariables.R | 26 +++++ R/inputCPT.R | 6 - R/rToJags.R | 2 R/writeJagsFormula.R | 3 R/writeJagsModel.R | 15 +-- build/vignette.rds |binary inst/doc/DecisionNetworks.html | 144 ++++++++++++++++---------------- inst/doc/GettingStartedWithHydeNet.html | 47 ++++------ inst/doc/HydeNetPlots.html | 4 inst/doc/WorkingWithHydeNetObjects.html | 6 - man/HydeNetwork.Rd | 10 +- man/TranslateFormula.Rd | 2 man/jagsDists.Rd | 2 man/jagsFunctions.Rd | 2 22 files changed, 257 insertions(+), 188 deletions(-)
Title: Excursion Sets and Contour Credibility Regions for Random Fields
Description: Functions that compute probabilistic excursion sets, contour credibility regions, contour avoiding regions, and simultaneous confidence bands for latent Gaussian random processes and fields. The package also contains functions that calculate these quantities for models estimated with the INLA package. The main references for excursions are Bolin and Lindgren (2015) <doi:10.1111/rssb.12055> and Bolin and Lindgren (2017) <doi:10.1080/10618600.2016.1228537>. These can be generated by the citation function in R.
Author: David Bolin [cre, aut],
Finn Lindgren [aut]
Maintainer: David Bolin <davidbolin@gmail.com>
Diff between excursions versions 2.3.3 dated 2018-04-03 and 2.4.1 dated 2018-07-19
excursions-2.3.3/excursions/man/tricontourmap.Rd |only excursions-2.4.1/excursions/DESCRIPTION | 19 excursions-2.4.1/excursions/MD5 | 85 +- excursions-2.4.1/excursions/NAMESPACE | 66 +- excursions-2.4.1/excursions/NEWS.md |only excursions-2.4.1/excursions/R/contourmap.R | 83 ++ excursions-2.4.1/excursions/R/contourmap.inla.R | 264 +++++++++ excursions-2.4.1/excursions/R/contourutil.R | 59 +- excursions-2.4.1/excursions/R/excursions.R | 168 +++++ excursions-2.4.1/excursions/R/excursions.inla.R | 118 ++++ excursions-2.4.1/excursions/R/gaussint.R | 79 ++ excursions-2.4.1/excursions/R/geometry.R | 284 +++++++++- excursions-2.4.1/excursions/R/inlautils.R | 45 - excursions-2.4.1/excursions/R/interface.mc.R | 152 +++++ excursions-2.4.1/excursions/R/simconf.R | 51 + excursions-2.4.1/excursions/R/simconf.inla.R | 66 ++ excursions-2.4.1/excursions/R/simconf.mixture.R | 52 + excursions-2.4.1/excursions/R/utils.R | 116 +++- excursions-2.4.1/excursions/man/continuous.Rd | 216 +++---- excursions-2.4.1/excursions/man/contourmap.Rd | 160 +++-- excursions-2.4.1/excursions/man/contourmap.colors.Rd | 47 - excursions-2.4.1/excursions/man/contourmap.inla.Rd | 183 ++++-- excursions-2.4.1/excursions/man/contourmap.mc.Rd | 128 ++-- excursions-2.4.1/excursions/man/excursions.Rd | 247 +++++--- excursions-2.4.1/excursions/man/excursions.inla.Rd | 180 +++--- excursions-2.4.1/excursions/man/excursions.mc.Rd | 115 ++-- excursions-2.4.1/excursions/man/excursions.variances.Rd | 43 - excursions-2.4.1/excursions/man/gaussint.Rd | 141 ++-- excursions-2.4.1/excursions/man/require.nowarnings.Rd | 59 -- excursions-2.4.1/excursions/man/simconf.Rd | 101 +-- excursions-2.4.1/excursions/man/simconf.inla.Rd | 121 ++-- excursions-2.4.1/excursions/man/simconf.mc.Rd | 58 +- excursions-2.4.1/excursions/man/simconf.mixture.Rd | 100 +-- excursions-2.4.1/excursions/man/submesh.grid.Rd | 58 -- excursions-2.4.1/excursions/man/submesh.mesh.Rd | 54 - excursions-2.4.1/excursions/man/summary.excurobj.Rd |only excursions-2.4.1/excursions/man/tricontour.Rd | 208 ++++--- excursions-2.4.1/excursions/src/RngStream.c | 28 excursions-2.4.1/excursions/src/integration.cpp | 3 excursions-2.4.1/excursions/src/qinv.cpp | 5 excursions-2.4.1/excursions/tests/testthat/helper-data.R | 42 + excursions-2.4.1/excursions/tests/testthat/test.contourmap.R | 12 excursions-2.4.1/excursions/tests/testthat/test.contourmap.inla.R | 62 ++ excursions-2.4.1/excursions/tests/testthat/test.excursions.R | 1 excursions-2.4.1/excursions/tests/testthat/test.integration.R | 20 45 files changed, 2890 insertions(+), 1209 deletions(-)
Title: 'DBHYDRO' Hydrologic and Water Quality Data
Description: Client for programmatic access to the South Florida Water
Management District's 'DBHYDRO' database at
<https://www.sfwmd.gov/science-data/dbhydro>, with functions
for accessing hydrologic and water quality data.
Author: Joseph Stachelek [aut, cre] (<https://orcid.org/0000-0002-5924-2464>)
Maintainer: Joseph Stachelek <stachel2@msu.edu>
Diff between dbhydroR versions 0.2-5 dated 2018-05-22 and 0.2-6 dated 2018-07-19
DESCRIPTION | 8 ++++---- MD5 | 18 +++++++++--------- NEWS.md | 6 ++++++ R/dbhydro_clean.R | 22 +++++++++++----------- R/dbhydro_get.R | 24 +++++++++++++----------- build/vignette.rds |binary inst/doc/dbhydroR.Rmd | 4 ++-- inst/doc/dbhydroR.html | 8 ++++---- man/get_wq.Rd | 4 ++-- vignettes/dbhydroR.Rmd | 4 ++-- 10 files changed, 53 insertions(+), 45 deletions(-)
Title: Pipeline for GWAS Using MLMM
Description: Pipeline for Genome-Wide Association Study using Multi-Locus Mixed Model from Segura V, Vilhjálmsson BJ et al. (2012) <doi:10.1038/ng.2314>. The pipeline include detection of associated SNPs with MLMM, model selection by lowest eBIC, estimation of the effects of the SNPs in the selected model and graphical functions.
Author: Fanny Bonnafous [aut], Alexandra Duhnen [aut], Louise Gody [aut], Olivier Guillaume[aut, cre], Brigitte Mangin [aut], Prune Pegot-Espagnet [aut], Vincent Segura [aut], Bjarni J. Vilhjalmsson [aut]
Maintainer: Olivier Guillaume <olivier.guillaume45@gmail.com>
Diff between mlmm.gwas versions 1.0.3 dated 2018-05-06 and 1.0.4 dated 2018-07-19
DESCRIPTION | 12 +++++------ MD5 | 35 ++++++++++++++++---------------- NAMESPACE | 1 NEWS | 23 ++++++++++++++++++--- R/Estimation_allmodels_withlmekin.r | 39 ++++++++++++++++++++++++++++-------- R/eBIC_allmodels_withlmekin_ML.r | 17 +++++++++++++++ R/fromeBICtoEstimation.r | 5 +++- R/mlmm_allmodels_withsommer.R | 36 ++++++++++++++++++++++++++++++--- R/plots.r | 26 +++++++++++++++++++----- R/run_entire_gwas_pipeline.R | 4 +-- R/sortAlphaNumeric.R |only inst/doc/gwas-manual.html | 34 +++++++++++++++---------------- man/Estimation_allmodels.Rd | 2 - man/eBIC_allmodels.Rd | 2 - man/fromeBICtoEstimation.Rd | 2 - man/frommlmm_toebic.Rd | 2 - man/genotypes.boxplot.Rd | 3 +- man/manhattan.plot.Rd | 2 - man/mlmm_allmodels.Rd | 2 - 19 files changed, 178 insertions(+), 69 deletions(-)
Title: Species Distribution Modelling Predictor Datasets
Description: Terrestrial and marine predictors for species distribution modelling
from multiple sources, including WorldClim <http://www.worldclim.org/>,,
ENVIREM <http://envirem.github.io/>, Bio-ORACLE <http://bio-oracle.org/>
and MARSPEC <http://www.marspec.org/>.
Author: Samuel Bosch [aut, cre],
Lennert Tyberghein [ctb],
Olivier De Clerck [ctb]
Maintainer: Samuel Bosch <mail@samuelbosch.com>
Diff between sdmpredictors versions 0.2.6 dated 2017-08-15 and 0.2.8 dated 2018-07-19
DESCRIPTION | 10 LICENSE | 2 MD5 | 98 ++-- NAMESPACE | 50 +- NEWS.md | 70 +-- R/citations.R | 202 ++++----- R/compression.R | 156 +++---- R/get_sysdata.R | 68 +-- R/list.R | 791 +++++++++++++++++++------------------- R/load.R | 244 +++++------ R/sdmpredictors.R | 62 +- R/stats.R | 784 +++++++++++++++++++------------------ R/sysdata.rda |binary README.md | 27 - build/vignette.rds |binary inst/doc/quickstart.R | 172 ++++---- inst/doc/quickstart.Rmd | 305 +++++++------- inst/doc/quickstart.html | 791 +++++++++++++++++++++++++------------- man/calculate_statistics.Rd | 73 +-- man/compress_file.Rd | 69 +-- man/correlation_groups.Rd | 99 ++-- man/dataset_citations.Rd | 79 +-- man/decompress_file.Rd | 61 +- man/equalareaproj.Rd | 33 - man/get_datadir.Rd | 53 +- man/get_future_layers.Rd | 83 +-- man/get_layers_info.Rd | 71 +-- man/get_paleo_layers.Rd | 91 ++-- man/layer_citations.Rd | 83 +-- man/layer_stats.Rd | 63 +-- man/layers_correlation.Rd | 71 +-- man/list_datasets.Rd | 76 +-- man/list_layers.Rd | 124 +++-- man/list_layers_future.Rd | 111 ++--- man/list_layers_paleo.Rd | 117 ++--- man/load_layers.Rd | 89 ++-- man/lonlatproj.Rd | 33 - man/pearson_correlation.Rd | 31 - man/pearson_correlation_matrix.Rd | 84 ++-- man/plot_correlation.Rd | 87 ++-- man/sdmpredictors.Rd | 67 +-- tests/testthat.R | 8 tests/testthat/test_citations.R | 113 ++--- tests/testthat/test_compression.R | 158 +++---- tests/testthat/test_get_sysdata.R | 90 ++-- tests/testthat/test_list.R | 250 +----------- tests/testthat/test_load.R | 328 +++++++-------- tests/testthat/test_stats.R | 212 +++++----- tests/testthat/test_zzzfinal.R | 30 - vignettes/quickstart.Rmd | 324 +++++++-------- 50 files changed, 3623 insertions(+), 3470 deletions(-)
Title: A Pipeline Toolkit for Reproducible Computation at Scale
Description: A general-purpose computational engine for data analysis,
drake rebuilds intermediate data objects when their dependencies change,
and it skips work when the results are already up to date.
Not every execution starts from scratch,
and completed projects have tangible evidence
that they are reproducible.
Extensive documentation, from beginner-friendly tutorials
to practical examples and more, is available at the reference website
<https://ropensci.github.io/drake/> and the online manual
<https://ropenscilabs.github.io/drake-manual/>.
Author: William Michael Landau [aut, cre],
Alex Axthelm [ctb],
Jasper Clarkberg [ctb],
Kirill Müller [ctb],
Ben Marwick [rev],
Peter Slaughter [rev],
Eli Lilly and Company [cph]
Maintainer: William Michael Landau <will.landau@gmail.com>
Diff between drake versions 5.2.1 dated 2018-06-19 and 5.3.0 dated 2018-07-19
drake-5.2.1/drake/R/dataframes_graph.R |only drake-5.2.1/drake/R/dataframes_graph_utils.R |only drake-5.2.1/drake/R/migrate.R |only drake-5.2.1/drake/R/plot_graph.R |only drake-5.2.1/drake/R/workplan.R |only drake-5.2.1/drake/inst/examples/sge/run.R |only drake-5.2.1/drake/inst/examples/sge/sge-simple.tmpl |only drake-5.2.1/drake/inst/examples/slurm/batchtools.slurm.tmpl |only drake-5.2.1/drake/inst/examples/slurm/run.R |only drake-5.2.1/drake/inst/examples/torque/run.R |only drake-5.2.1/drake/inst/examples/torque/torque.tmpl |only drake-5.2.1/drake/inst/testing/test.Rmd |only drake-5.2.1/drake/man/possible_targets.Rd |only drake-5.2.1/drake/tests/testthat/test-migrate.R |only drake-5.2.1/drake/tests/testthat/test-workflow-plan.R |only drake-5.3.0/drake/DESCRIPTION | 20 drake-5.3.0/drake/MD5 | 384 +++++----- drake-5.3.0/drake/NAMESPACE | 35 drake-5.3.0/drake/NEWS.md |only drake-5.3.0/drake/R/Makefile.R | 26 drake-5.3.0/drake/R/build.R | 26 drake-5.3.0/drake/R/build_times.R | 3 drake-5.3.0/drake/R/cache.R | 29 drake-5.3.0/drake/R/cache_log.R | 4 drake-5.3.0/drake/R/cache_ui.R | 5 drake-5.3.0/drake/R/check.R | 9 drake-5.3.0/drake/R/clean.R | 78 -- drake-5.3.0/drake/R/color.R | 12 drake-5.3.0/drake/R/config.R | 180 ++-- drake-5.3.0/drake/R/dependencies.R | 188 +--- drake-5.3.0/drake/R/deprecate.R | 216 ++++- drake-5.3.0/drake/R/distributed.R | 17 drake-5.3.0/drake/R/drake_graph_info.R |only drake-5.3.0/drake/R/drake_graph_info_utils.R |only drake-5.3.0/drake/R/envir.R | 50 - drake-5.3.0/drake/R/examples.R | 2 drake-5.3.0/drake/R/expose_imports.R | 9 drake-5.3.0/drake/R/future.R | 71 - drake-5.3.0/drake/R/future_lapply.R | 4 drake-5.3.0/drake/R/generate.R | 172 +++- drake-5.3.0/drake/R/graph.R | 112 ++ drake-5.3.0/drake/R/handlers.R | 13 drake-5.3.0/drake/R/hash.R | 12 drake-5.3.0/drake/R/hooks.R | 8 drake-5.3.0/drake/R/knitr.R | 15 drake-5.3.0/drake/R/make.R | 38 drake-5.3.0/drake/R/mc_utils.R | 57 + drake-5.3.0/drake/R/mclapply.R | 33 drake-5.3.0/drake/R/meta.R | 94 +- drake-5.3.0/drake/R/mtcars_example.R | 47 - drake-5.3.0/drake/R/outdated.R | 22 drake-5.3.0/drake/R/package.R | 19 drake-5.3.0/drake/R/parallel_ui.R | 93 +- drake-5.3.0/drake/R/plan.R |only drake-5.3.0/drake/R/predict_runtime.R | 2 drake-5.3.0/drake/R/priority_queue.R | 2 drake-5.3.0/drake/R/progress.R | 8 drake-5.3.0/drake/R/read.R | 16 drake-5.3.0/drake/R/recipe.R | 6 drake-5.3.0/drake/R/run.R | 30 drake-5.3.0/drake/R/sanitize.R | 37 drake-5.3.0/drake/R/sankey_drake_graph.R |only drake-5.3.0/drake/R/shape.R | 1 drake-5.3.0/drake/R/staged.R | 121 +++ drake-5.3.0/drake/R/static_drake_graph.R |only drake-5.3.0/drake/R/store.R | 37 drake-5.3.0/drake/R/test.R | 1 drake-5.3.0/drake/R/test_scenarios.R | 4 drake-5.3.0/drake/R/timestamp.R | 2 drake-5.3.0/drake/R/tips.R | 3 drake-5.3.0/drake/R/triggers.R | 55 - 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Title: Portmanteau Tests for Univariate and Multivariate Time. Series
Models
Description: Simulate a univariate and multivariate data from seasonal and nonseasonal time series models. It implements the popular univariate and multivariate portmanteau test statistics based on the asymptotic distributions and the Monte Carlo significance tests.
Author: Esam Mahdi and A. Ian McLeod
Maintainer: Esam Mahdi <emahdi@iugaza.edu.ps>
Diff between portes versions 2.1-4 dated 2017-05-05 and 3.0 dated 2018-07-19
DESCRIPTION | 20 - MD5 | 33 +-- NAMESPACE | 2 R/portest.R | 6 build/vignette.rds |binary inst/doc/portesFunctions.R |only inst/doc/portesFunctions.Rnw | 19 - inst/doc/portesFunctions.pdf |binary inst/doc/portesV.bib | 8 man/BoxPierce.Rd | 2 man/Hosking.Rd | 2 man/LiMcLeod.Rd | 2 man/LjungBox.Rd | 2 man/MahdiMcLeod.Rd | 2 man/portes-package.Rd | 447 ------------------------------------------ man/portest.Rd | 13 - vignettes/portesFunctions.Rnw | 19 - vignettes/portesV.bib | 8 18 files changed, 55 insertions(+), 530 deletions(-)
Title: Extra Themes, Scales and Geoms for 'ggplot2'
Description: Some extra themes, geoms, and scales for 'ggplot2'.
Provides 'ggplot2' themes and scales that replicate the look of plots
by Edward Tufte, Stephen Few, 'Fivethirtyeight', 'The Economist', 'Stata',
'Excel', and 'The Wall Street Journal', among others.
Provides 'geoms' for Tufte's box plot and range frame.
Author: Jeffrey B. Arnold [aut, cre] (<https://orcid.org/0000-0001-9953-3904>),
Gergely Daroczi [ctb],
Bo Werth [ctb],
Brian Weitzner [ctb],
Joshua Kunst [ctb],
Baptise Auguie [ctb],
Bob Rudis [ctb],
Hadley Wickham [ctb] (Code from the ggplot2 package.),
Justin Talbot [ctb] (Code from the labeling package),
Joshua London [ctb]
Maintainer: Jeffrey B. Arnold <jeffrey.arnold@gmail.com>
Diff between ggthemes versions 3.5.0 dated 2018-05-07 and 4.0.0 dated 2018-07-19
ggthemes-3.5.0/ggthemes/R/ggthemes-data.R |only ggthemes-3.5.0/ggthemes/R/scale-tufte.R |only ggthemes-3.5.0/ggthemes/build/vignette.rds |only ggthemes-3.5.0/ggthemes/inst/doc |only ggthemes-3.5.0/ggthemes/man/tableau_div_gradient_pal.Rd |only ggthemes-3.5.0/ggthemes/man/tableau_seq_gradient_pal.Rd |only ggthemes-3.5.0/ggthemes/vignettes |only ggthemes-4.0.0/ggthemes/DESCRIPTION | 37 - ggthemes-4.0.0/ggthemes/MD5 | 313 +++++----- ggthemes-4.0.0/ggthemes/NAMESPACE | 20 ggthemes-4.0.0/ggthemes/NEWS.md | 24 ggthemes-4.0.0/ggthemes/R/banking.R | 7 ggthemes-4.0.0/ggthemes/R/base.R | 6 ggthemes-4.0.0/ggthemes/R/calc.R | 74 ++ ggthemes-4.0.0/ggthemes/R/canva.R | 39 - ggthemes-4.0.0/ggthemes/R/colorblind.R | 5 ggthemes-4.0.0/ggthemes/R/economist.R | 163 ++--- ggthemes-4.0.0/ggthemes/R/excel.R | 163 ++++- ggthemes-4.0.0/ggthemes/R/few.R | 112 ++- ggthemes-4.0.0/ggthemes/R/fivethirtyeight.R | 25 ggthemes-4.0.0/ggthemes/R/gdocs.R | 57 + ggthemes-4.0.0/ggthemes/R/geom-tufteboxplot.R | 32 - ggthemes-4.0.0/ggthemes/R/ggthemes-package.R | 18 ggthemes-4.0.0/ggthemes/R/ggthemes_data.R |only ggthemes-4.0.0/ggthemes/R/hc.R | 55 + ggthemes-4.0.0/ggthemes/R/ptol.R | 19 ggthemes-4.0.0/ggthemes/R/scales.R |only ggthemes-4.0.0/ggthemes/R/shapes.R | 131 +--- ggthemes-4.0.0/ggthemes/R/show.R | 24 ggthemes-4.0.0/ggthemes/R/solarized.R | 42 - ggthemes-4.0.0/ggthemes/R/stat-fivenumber.R | 47 + ggthemes-4.0.0/ggthemes/R/stata.R | 235 +++---- ggthemes-4.0.0/ggthemes/R/tableau.R | 196 ++---- ggthemes-4.0.0/ggthemes/R/theme-foundation.R | 5 ggthemes-4.0.0/ggthemes/R/theme-solid.R | 6 ggthemes-4.0.0/ggthemes/R/utils.R | 27 ggthemes-4.0.0/ggthemes/R/wsj.R | 30 ggthemes-4.0.0/ggthemes/build/ggthemes.pdf |only ggthemes-4.0.0/ggthemes/data/ggthemes_data.rda |only ggthemes-4.0.0/ggthemes/inst/WORDLIST | 5 ggthemes-4.0.0/ggthemes/inst/examples/ex-calc_shape_pal.R | 4 ggthemes-4.0.0/ggthemes/inst/examples/ex-canva_pal.R |only ggthemes-4.0.0/ggthemes/inst/examples/ex-circlefill_shape_pal.R | 9 ggthemes-4.0.0/ggthemes/inst/examples/ex-economist_pal.R | 2 ggthemes-4.0.0/ggthemes/inst/examples/ex-excel_new_pal.R |only ggthemes-4.0.0/ggthemes/inst/examples/ex-excel_pal.R | 5 ggthemes-4.0.0/ggthemes/inst/examples/ex-few_pal.R | 4 ggthemes-4.0.0/ggthemes/inst/examples/ex-few_shape_pal.R |only ggthemes-4.0.0/ggthemes/inst/examples/ex-geom_tufteboxplot.R | 12 ggthemes-4.0.0/ggthemes/inst/examples/ex-scale_color_tableau.R | 21 ggthemes-4.0.0/ggthemes/inst/examples/ex-scale_colour_excel_classic.R |only ggthemes-4.0.0/ggthemes/inst/examples/ex-scale_colour_excel_new.R |only ggthemes-4.0.0/ggthemes/inst/examples/ex-scale_colour_gradient2_tableau.R | 9 ggthemes-4.0.0/ggthemes/inst/examples/ex-scale_colour_gradient_tableau.R | 9 ggthemes-4.0.0/ggthemes/inst/examples/ex-scale_colour_ptol.R |only ggthemes-4.0.0/ggthemes/inst/examples/ex-scale_shape_tremmel.R | 14 ggthemes-4.0.0/ggthemes/inst/examples/ex-scale_solarized.R | 3 ggthemes-4.0.0/ggthemes/inst/examples/ex-tableau_color_pal.R | 17 ggthemes-4.0.0/ggthemes/inst/examples/ex-tableau_div_gradient_pal.R | 14 ggthemes-4.0.0/ggthemes/inst/examples/ex-tableau_seq_gradient_pal.R | 11 ggthemes-4.0.0/ggthemes/inst/examples/ex-tableau_shape_pal.R | 5 ggthemes-4.0.0/ggthemes/inst/examples/ex-theme_base.R | 3 ggthemes-4.0.0/ggthemes/inst/examples/ex-theme_economist.R | 17 ggthemes-4.0.0/ggthemes/inst/examples/ex-theme_excel.R | 6 ggthemes-4.0.0/ggthemes/inst/examples/ex-theme_excel_new.R |only ggthemes-4.0.0/ggthemes/inst/examples/ex-theme_few.R | 14 ggthemes-4.0.0/ggthemes/inst/examples/ex-theme_hc.R | 30 ggthemes-4.0.0/ggthemes/inst/examples/ex-theme_map.R | 12 ggthemes-4.0.0/ggthemes/inst/examples/ex-theme_par.R | 11 ggthemes-4.0.0/ggthemes/inst/examples/ex-theme_solarized.R | 16 ggthemes-4.0.0/ggthemes/inst/examples/ex-theme_solid.R | 10 ggthemes-4.0.0/ggthemes/inst/examples/ex-theme_stata.R | 22 ggthemes-4.0.0/ggthemes/inst/examples/ex-theme_tufte.R | 32 - 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Title: Geometric Shadow Calculations
Description: Functions for calculating: (1) shadow height, (2) logical shadow flag, (3) shadow footprint, (4) Sky View Factor and (5) radiation load. Basic required inputs include a polygonal layer of obstacle outlines along with their heights (i.e. "extruded polygons"), sun azimuth and sun elevation. The package also provides functions for related preliminary calculations: breaking polygons into line segments, determining azimuth of line segments, shifting segments by azimuth and distance, constructing the footprint of a line-of-sight between an observer and the sun, and creating a 3D grid covering the surface area of extruded polygons.
Author: Michael Dorman [aut, cre],
Evyatar Erell [ctb],
Itai Kloog [ctb],
Adi Vulkan [ctb]
Maintainer: Michael Dorman <dorman@post.bgu.ac.il>
Diff between shadow versions 0.5.3 dated 2018-05-16 and 0.5.5 dated 2018-07-19
DESCRIPTION | 6 +-- MD5 | 18 +++++----- NEWS.md | 13 ++++++- R/data.R | 6 ++- R/radiation.R | 80 +++++++++++++++++++--------------------------- R/radiationGrid.R | 38 +++++++++++++-------- data/tmy.RData |binary inst/doc/introduction.pdf |binary man/radiation.Rd | 30 +++++++++++------ man/tmy.Rd | 6 ++- 10 files changed, 110 insertions(+), 87 deletions(-)
Title: API to Melbourne Pedestrian Data
Description: Provides API to Melbourne pedestrian data in tidy data form.
Author: Earo Wang [aut, cre] (<https://orcid.org/0000-0001-6448-5260>)
Maintainer: Earo Wang <earo.wang@gmail.com>
Diff between rwalkr versions 0.3.3 dated 2018-03-19 and 0.3.4 dated 2018-07-19
DESCRIPTION | 10 +++++----- MD5 | 8 ++++---- NEWS.md | 4 ++++ R/soda.R | 2 +- man/figure/plot-1.png |binary 5 files changed, 14 insertions(+), 10 deletions(-)
Title: Interface to the Search 'API' for 'PLoS' Journals
Description: A programmatic interface to the 'SOLR' based
search 'API' (<http://api.plos.org/>) provided by the Public
Library of Science journals to search their articles.
Functions are included for searching for articles, retrieving
articles, making plots, doing 'faceted' searches,
'highlight' searches, and viewing results of 'highlighted'
searches in a browser.
Author: Scott Chamberlain [aut, cre] (<https://orcid.org/0000-0003-1444-9135>),
Carl Boettiger [aut],
Karthik Ram [aut]
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between rplos versions 0.8.0 dated 2017-11-03 and 0.8.2 dated 2018-07-19
DESCRIPTION | 17 +- LICENSE | 2 MD5 | 99 +++++++----- NEWS.md | 14 + R/highbrow.r | 2 R/searchplos.R | 6 README.md | 269 ++++++++++++++++----------------- build/vignette.rds |binary inst/doc/facethighlight.Rmd | 98 +++++------- inst/doc/facethighlight.html | 100 +++++------- inst/doc/fulltext.Rmd | 55 +++--- inst/doc/fulltext.html | 55 +++--- inst/doc/rplos_vignette.Rmd | 198 ++++++++++++++---------- inst/doc/rplos_vignette.html | 202 ++++++++++++++---------- inst/vign/facethighlight.md | 98 +++++------- inst/vign/figure/plosword1plot-1.png |binary inst/vign/figure/throughtime1-1.png |binary inst/vign/fulltext.md | 55 +++--- inst/vign/rplos_vignette.md | 198 ++++++++++++++---------- tests/fixtures |only tests/testthat/helper-rplos.R |only tests/testthat/test-facetplos.R | 99 +++++------- tests/testthat/test-formatarticleurl.R | 8 tests/testthat/test-fulltext.R | 54 +++--- tests/testthat/test-highbrow.R | 14 - tests/testthat/test-highplos.R | 87 +++++----- tests/testthat/test-journalnamekey.R | 18 +- tests/testthat/test-plosabstract.R | 27 +-- tests/testthat/test-plosauthor.R | 16 - tests/testthat/test-plosfigtabcaps.R | 27 +-- tests/testthat/test-plossubject.R | 13 - tests/testthat/test-plostitle.R | 28 +-- tests/testthat/test-plosviews.R | 23 +- tests/testthat/test-plosword.R | 16 - tests/testthat/test-plot_throughtime.R | 21 +- tests/testthat/test-searchplos.R | 46 ++--- tools/unnamed-chunk-21-1.png |binary vignettes/facethighlight.Rmd | 98 +++++------- vignettes/fulltext.Rmd | 55 +++--- vignettes/rplos_vignette.Rmd | 198 ++++++++++++++---------- 40 files changed, 1218 insertions(+), 1098 deletions(-)
Title: Grouped Statistical Analyses in a Tidy Way
Description: Collection of functions to run statistical tests across all levels
of multiple grouping variables.
Author: Indrajeet Patil [aut, cre] (<https://orcid.org/0000-0003-1995-6531>)
Maintainer: Indrajeet Patil <patilindrajeet.science@gmail.com>
Diff between groupedstats versions 0.0.1 dated 2018-07-05 and 0.0.2 dated 2018-07-19
groupedstats-0.0.1/groupedstats/R/utils-tidy-eval.R |only groupedstats-0.0.1/groupedstats/man/groupedstats.Rd |only groupedstats-0.0.1/groupedstats/man/tidyeval.Rd |only groupedstats-0.0.2/groupedstats/DESCRIPTION | 20 groupedstats-0.0.2/groupedstats/MD5 | 60 - groupedstats-0.0.2/groupedstats/NAMESPACE | 38 groupedstats-0.0.2/groupedstats/NEWS.md | 19 groupedstats-0.0.2/groupedstats/R/data.R |only groupedstats-0.0.2/groupedstats/R/global_vars.R | 5 groupedstats-0.0.2/groupedstats/R/grouped_aov.R |only groupedstats-0.0.2/groupedstats/R/grouped_glm.R | 235 ++-- groupedstats-0.0.2/groupedstats/R/grouped_glmer.R |only groupedstats-0.0.2/groupedstats/R/grouped_lm.R |only groupedstats-0.0.2/groupedstats/R/grouped_lmer.R |only groupedstats-0.0.2/groupedstats/R/grouped_proptest.R | 32 groupedstats-0.0.2/groupedstats/R/grouped_robustslr.R | 16 groupedstats-0.0.2/groupedstats/R/grouped_slr.R | 34 groupedstats-0.0.2/groupedstats/R/grouped_summary.R | 146 +- groupedstats-0.0.2/groupedstats/R/grouped_ttest.R | 10 groupedstats-0.0.2/groupedstats/R/grouped_wilcox.R | 10 groupedstats-0.0.2/groupedstats/R/groupedstats-package.R | 7 groupedstats-0.0.2/groupedstats/R/helpers.R | 178 +-- groupedstats-0.0.2/groupedstats/README.md | 574 ++++++++-- groupedstats-0.0.2/groupedstats/data |only groupedstats-0.0.2/groupedstats/inst/WORDLIST | 15 groupedstats-0.0.2/groupedstats/man/Titanic_full.Rd |only groupedstats-0.0.2/groupedstats/man/figures/README-grouped_summary3-1.png |binary groupedstats-0.0.2/groupedstats/man/grouped_aov.Rd |only groupedstats-0.0.2/groupedstats/man/grouped_glm.Rd | 59 - groupedstats-0.0.2/groupedstats/man/grouped_glmer.Rd |only groupedstats-0.0.2/groupedstats/man/grouped_lm.Rd |only groupedstats-0.0.2/groupedstats/man/grouped_lmer.Rd |only groupedstats-0.0.2/groupedstats/man/grouped_slr.Rd | 3 groupedstats-0.0.2/groupedstats/man/groupedstats-package.Rd |only groupedstats-0.0.2/groupedstats/man/intent_morality.Rd |only groupedstats-0.0.2/groupedstats/man/lm_effsize_ci.Rd | 34 groupedstats-0.0.2/groupedstats/man/movies_long.Rd |only groupedstats-0.0.2/groupedstats/man/movies_wide.Rd |only groupedstats-0.0.2/groupedstats/tests |only 39 files changed, 1020 insertions(+), 475 deletions(-)
Title: Australian Government Bureau of Meteorology (BOM) Data from R
Description: Provides functions to interface with Australian Government Bureau
of Meteorology (BOM) data, fetching data and returning a tidy data frame of
précis forecasts, historical and current weather data from stations,
agriculture bulletin data, BOM 0900 or 1500 weather bulletins or a raster
stack object of satellite imagery from GeoTIFF files. Data (c) Australian
Government Bureau of Meteorology Creative Commons (CC) Attribution 3.0
licence or Public Access Licence (PAL) as appropriate. See
<http://www.bom.gov.au/other/copyright.shtml> for further details.
Author: Adam Sparks [aut, cre] (<https://orcid.org/0000-0002-0061-8359>),
Jonathan Carroll [aut] (<https://orcid.org/0000-0002-1404-5264>),
Mark Padgham [aut, rev] (<https://orcid.org/0000-0003-2172-5265>),
Hugh Parsonage [aut] (<https://orcid.org/0000-0003-4055-0835>),
Keith Pembleton [aut] (<https://orcid.org/0000-0002-1896-4516>),
James Balamuta [ctb] (<https://orcid.org/0000-0003-2826-8458>),
Brooke Anderson [rev] (<https://orcid.org/0000-0002-5012-9035>)
Maintainer: Adam Sparks <adamhsparks@gmail.com>
Diff between bomrang versions 0.2.1 dated 2018-06-16 and 0.2.2 dated 2018-07-19
bomrang-0.2.1/bomrang/man/figures/bomrang-hex.png |only bomrang-0.2.2/bomrang/DESCRIPTION | 8 bomrang-0.2.2/bomrang/MD5 | 28 bomrang-0.2.2/bomrang/NEWS.md | 12 bomrang-0.2.2/bomrang/R/bomrang.r | 3 bomrang-0.2.2/bomrang/R/internal_functions.R | 2 bomrang-0.2.2/bomrang/README.md | 551 -------------- bomrang-0.2.2/bomrang/build/vignette.rds |binary bomrang-0.2.2/bomrang/inst/CITATION | 23 bomrang-0.2.2/bomrang/inst/doc/bomrang.html | 12 bomrang-0.2.2/bomrang/inst/doc/use_case.html | 10 bomrang-0.2.2/bomrang/inst/extdata/AAC_codes.rda |binary bomrang-0.2.2/bomrang/inst/extdata/JSONurl_site_list.rda |binary bomrang-0.2.2/bomrang/inst/extdata/stations_site_list.rda |binary bomrang-0.2.2/bomrang/man/bomrang.Rd | 6 bomrang-0.2.2/bomrang/man/figures/logo.png |only 16 files changed, 70 insertions(+), 585 deletions(-)
Title: Standard and User-Defined RGB Color Spaces, with Conversion
Between RGB and CIE XYZ
Description: Standard RGB spaces included are sRGB, 'Adobe' RGB, 'ProPhoto' RGB, BT.709, and others. User-defined RGB spaces are also possible.
Author: Glenn Davis [aut,cre]
Maintainer: Glenn Davis <gdavis@gluonics.com>
Diff between spacesRGB versions 1.0-4 dated 2018-06-04 and 1.1-1 dated 2018-07-19
DESCRIPTION | 10 - MD5 | 38 ++-- NAMESPACE | 8 - NEWS.md | 10 + R/OETFs.R |only R/conversion.R | 155 +++++++++---------- R/datasets.R | 50 +++++- R/installation.R | 367 +++++++++++++++++++++++++++++++++++++--------- R/logging.R | 5 R/plot.R |only R/sysdata.rda |binary R/utils.R | 22 ++ man/RGBfromXYZ.Rd | 50 +++--- man/RGBspaces.Rd | 141 +++++++++++------ man/XYZfromRGB.Rd | 54 +++--- man/figures |only man/plotPatchesRGB.Rd |only man/spacesRGB-package.Rd | 219 +++++++++++++++++++-------- tests/Rplots.pdf |only tests/test-conversions.R | 10 - tests/test-installation.R | 11 - tests/test-plots.R |only 22 files changed, 795 insertions(+), 355 deletions(-)
Title: Kinetic Evaluation of Chemical Degradation Data
Description: Calculation routines based on the FOCUS Kinetics Report (2006,
2014). Includes a function for conveniently defining differential equation
models, model solution based on eigenvalues if possible or using numerical
solvers and a choice of the optimisation methods made available by the 'FME'
package. If a C compiler (on windows: 'Rtools') is installed, differential
equation models are solved using compiled C functions. Please note that no
warranty is implied for correctness of results or fitness for a particular
purpose.
Author: Johannes Ranke [aut, cre, cph]
(<https://orcid.org/0000-0003-4371-6538>),
Katrin Lindenberger [ctb],
René Lehmann [ctb],
Eurofins Regulatory AG [cph]
Maintainer: Johannes Ranke <jranke@uni-bremen.de>
Diff between mkin versions 0.9.47.1 dated 2018-02-06 and 0.9.47.2 dated 2018-07-19
mkin-0.9.47.1/mkin/R/sigma_rl.R |only mkin-0.9.47.1/mkin/man/sigma_rl.Rd |only mkin-0.9.47.2/mkin/DESCRIPTION | 9 - mkin-0.9.47.2/mkin/MD5 | 75 +++++++---- mkin-0.9.47.2/mkin/NEWS.md | 8 + mkin-0.9.47.2/mkin/R/mkinfit.R | 11 + mkin-0.9.47.2/mkin/R/sigma_twocomp.R |only mkin-0.9.47.2/mkin/README.md | 24 +-- mkin-0.9.47.2/mkin/build/vignette.rds |binary mkin-0.9.47.2/mkin/inst/doc/FOCUS_D.html | 20 +-- mkin-0.9.47.2/mkin/inst/doc/FOCUS_L.html | 123 +++++++++---------- mkin-0.9.47.2/mkin/inst/doc/compiled_models.R | 2 mkin-0.9.47.2/mkin/inst/doc/compiled_models.Rmd | 4 mkin-0.9.47.2/mkin/inst/doc/compiled_models.html | 42 +++--- mkin-0.9.47.2/mkin/inst/doc/mkin.html | 22 +-- mkin-0.9.47.2/mkin/inst/doc/twa.html | 4 mkin-0.9.47.2/mkin/man/FOCUS_2006_DFOP_ref_A_to_B.Rd | 2 mkin-0.9.47.2/mkin/man/FOCUS_2006_FOMC_ref_A_to_F.Rd | 2 mkin-0.9.47.2/mkin/man/FOCUS_2006_HS_ref_A_to_F.Rd | 2 mkin-0.9.47.2/mkin/man/FOCUS_2006_SFO_ref_A_to_F.Rd | 2 mkin-0.9.47.2/mkin/man/mkinfit.Rd | 9 - mkin-0.9.47.2/mkin/man/mmkin.Rd | 4 mkin-0.9.47.2/mkin/man/schaefer07_complex_case.Rd | 2 mkin-0.9.47.2/mkin/man/sigma_twocomp.Rd |only mkin-0.9.47.2/mkin/man/synthetic_data_for_UBA.Rd | 5 mkin-0.9.47.2/mkin/man/test_data_from_UBA_2014.Rd | 108 ++++++++-------- mkin-0.9.47.2/mkin/tests/testthat.R | 4 mkin-0.9.47.2/mkin/vignettes/FOCUS_D_cache |only mkin-0.9.47.2/mkin/vignettes/FOCUS_Z.html | 80 ++++++------ mkin-0.9.47.2/mkin/vignettes/compiled_models.Rmd | 4 mkin-0.9.47.2/mkin/vignettes/mkin_cache |only 31 files changed, 302 insertions(+), 266 deletions(-)
Title: HTTP and WebSocket Server Library
Description: Provides low-level socket and protocol support for handling
HTTP and WebSocket requests directly from within R. It is primarily
intended as a building block for other packages, rather than making it
particularly easy to create complete web applications using httpuv alone.
httpuv is built on top of the libuv and http-parser C libraries, both of
which were developed by Joyent, Inc. (See LICENSE file for libuv and
http-parser license information.)
Author: Joe Cheng, Hector Corrada Bravo [ctb], Jeroen Ooms [ctb],
Winston Chang [ctb]
Maintainer: Joe Cheng <joe@rstudio.com>
Diff between httpuv versions 1.4.4.2 dated 2018-07-02 and 1.4.5 dated 2018-07-19
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 5 +++++ src/httprequest.cpp | 37 ++++++++++++++++++++++++++++--------- src/httprequest.h | 10 ++++++++++ 5 files changed, 50 insertions(+), 16 deletions(-)
Title: Bioequivalence Study Data Analysis
Description: Analyze bioequivalence study data with industrial strength. Sample size could be determined for various crossover designs, such as 2x2 design, 2x4 design, 4x4 design, Balaam design, Two-sequence dual design, and William design.
Reference: Chow SC, Liu JP. Design and Analysis of Bioavailability and Bioequivalence Studies. 3rd ed. (2009, ISBN:978-1-58488-668-6).
Author: Kyun-Seop Bae [aut]
Maintainer: Kyun-Seop Bae <k@acr.kr>
Diff between BE versions 0.1.0 dated 2018-06-18 and 0.1.1 dated 2018-07-19
DESCRIPTION | 10 +++---- MD5 | 49 ++++++++++++++++++++----------------- NAMESPACE | 3 +- R/be2x2.R | 40 ++++++++++++++++++++++++++++-- R/plot2x2.R | 64 ++----------------------------------------------- R/plot2x2a.R |only R/plot2x2b.R |only inst/NEWS.Rd | 8 +++++- inst/doc/BE-manual.pdf |binary man/BE-package.Rd |only man/NCAResult4BE.Rd | 7 +++-- man/be2x2.Rd | 14 ++++------ man/ci2cv.Rd | 7 ++--- man/ci2mse.Rd | 7 ++--- man/cv2mse.Rd | 8 +++--- man/hodges.Rd | 6 ++-- man/mse2cv.Rd | 6 ++-- man/plot2x2.Rd | 8 +++--- man/plot2x2a.Rd |only man/plot2x2b.Rd |only man/pow2x2ci.Rd | 6 ++-- man/pow2x2mse.Rd | 2 - man/powcv.Rd | 2 - man/powmse.Rd | 2 - man/ss2x2ci.Rd | 6 ++-- man/sscv.Rd | 2 - man/ssmse.Rd | 2 - man/test2x2.Rd | 14 +++++----- 28 files changed, 129 insertions(+), 144 deletions(-)
More information about ApacheLogProcessor at CRAN
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Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-07-05 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-07-05 0.1.0
Title: Plot Flow Charts According to the "PRISMA" Statement
Description: Plot a PRISMA <http://prisma-statement.org/> flow
chart describing the identification, screening, eligibility and
inclusion or studies in systematic reviews. PRISMA is an
evidence-based minimum set of items for reporting in systematic
reviews and meta-analyses. PRISMA focuses on the reporting of reviews
evaluating randomized trials, but can also be used as a basis for
reporting systematic reviews of other types of research, particularly
evaluations of interventions.
Author: Jack O. Wasey [aut, cre, cph]
Maintainer: Jack O. Wasey <jack@jackwasey.com>
Diff between PRISMAstatement versions 1.0.1 dated 2016-10-11 and 1.0.2 dated 2018-07-19
DESCRIPTION | 36 MD5 | 21 NEWS.md |only R/prisma.r | 19 README.md |only build/vignette.rds |binary inst/doc/PRISMA.R | 38 inst/doc/PRISMA.Rmd | 51 inst/doc/PRISMA.html | 2639 ++++++++++++++++++++++++++++++++++++++++++- man/figures |only man/prisma.Rd | 14 tests/testthat/test-prisma.r | 22 vignettes/PRISMA.Rmd | 51 13 files changed, 2791 insertions(+), 100 deletions(-)
More information about PRISMAstatement at CRAN
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