Title: Quadratic Programming Solver using the 'OSQP' Library
Description: Provides bindings to the 'OSQP' solver. The 'OSQP' solver is a numerical optimization package or solving convex quadratic programs written in 'C' and based on the alternating direction method of multipliers, 'ADMM'. B. Stellato, G. Banjac, P. Goulart, A. Bemporad, S. Boyd (2018) <arXiv:1711.08013>.
Author: Bartolomeo Stellato [cre, aut, ctb, cph],
Goran Banjac [aut, ctb, cph],
Paul Goulart [aut, ctb, cph],
Stephen Boyd [aut, ctb, cph],
Eric Anderson [ctb]
Maintainer: Bartolomeo Stellato <bartolomeo.stellato@gmail.com>
Diff between osqp versions 0.3.1 dated 2018-07-01 and 0.4.0 dated 2018-07-23
osqp-0.3.1/osqp/src/osqp_sources/lin_sys/direct/pardiso/pardiso.c |only osqp-0.3.1/osqp/src/osqp_sources/lin_sys/direct/pardiso/pardiso.h |only osqp-0.3.1/osqp/src/osqp_sources/lin_sys/direct/suitesparse |only osqp-0.4.0/osqp/DESCRIPTION | 8 osqp-0.4.0/osqp/MD5 | 184 +++++----- osqp-0.4.0/osqp/R/osqp.R | 2 osqp-0.4.0/osqp/R/params.R | 6 osqp-0.4.0/osqp/configure | 8 osqp-0.4.0/osqp/inst/COPYRIGHT | 11 osqp-0.4.0/osqp/man/osqpSettings.Rd | 4 osqp-0.4.0/osqp/src/Makevars | 2 osqp-0.4.0/osqp/src/osqp/Makefile | 51 +- osqp-0.4.0/osqp/src/osqp_solve_interface.cpp | 4 osqp-0.4.0/osqp/src/osqp_sources/CHANGELOG.md | 7 osqp-0.4.0/osqp/src/osqp_sources/CMakeLists.txt | 21 - osqp-0.4.0/osqp/src/osqp_sources/NOTICE | 10 osqp-0.4.0/osqp/src/osqp_sources/README.md | 2 osqp-0.4.0/osqp/src/osqp_sources/ci/appveyor/deploy.cmd | 12 osqp-0.4.0/osqp/src/osqp_sources/ci/appveyor/install.cmd | 3 osqp-0.4.0/osqp/src/osqp_sources/ci/appveyor/script.cmd | 26 + osqp-0.4.0/osqp/src/osqp_sources/ci/travis/deploy.sh | 14 osqp-0.4.0/osqp/src/osqp_sources/ci/travis/script.sh | 32 + osqp-0.4.0/osqp/src/osqp_sources/docs/conf.py | 2 osqp-0.4.0/osqp/src/osqp_sources/docs/doxygen.conf | 2 osqp-0.4.0/osqp/src/osqp_sources/docs/get_started/CC++.rst | 7 osqp-0.4.0/osqp/src/osqp_sources/docs/get_started/linear_system_solvers.rst | 8 osqp-0.4.0/osqp/src/osqp_sources/docs/get_started/matlab.rst | 2 osqp-0.4.0/osqp/src/osqp_sources/docs/get_started/r.rst | 2 osqp-0.4.0/osqp/src/osqp_sources/docs/get_started/sources.rst | 2 osqp-0.4.0/osqp/src/osqp_sources/docs/index.rst | 2 osqp-0.4.0/osqp/src/osqp_sources/docs/interfaces/index.rst | 6 osqp-0.4.0/osqp/src/osqp_sources/docs/interfaces/linear_systems_solvers.rst | 2 osqp-0.4.0/osqp/src/osqp_sources/docs/interfaces/r.rst | 16 osqp-0.4.0/osqp/src/osqp_sources/docs/interfaces/solver_settings.rst | 2 osqp-0.4.0/osqp/src/osqp_sources/include/constants.h | 23 + osqp-0.4.0/osqp/src/osqp_sources/include/cs.h | 7 osqp-0.4.0/osqp/src/osqp_sources/include/glob_opts.h | 14 osqp-0.4.0/osqp/src/osqp_sources/lin_sys/direct/CMakeLists.txt | 18 osqp-0.4.0/osqp/src/osqp_sources/lin_sys/direct/pardiso/CMakeLists.txt | 4 osqp-0.4.0/osqp/src/osqp_sources/lin_sys/direct/pardiso/pardiso_interface.c |only osqp-0.4.0/osqp/src/osqp_sources/lin_sys/direct/pardiso/pardiso_interface.h |only osqp-0.4.0/osqp/src/osqp_sources/lin_sys/direct/pardiso/pardiso_loader.c | 5 osqp-0.4.0/osqp/src/osqp_sources/lin_sys/direct/pardiso/pardiso_loader.h | 1 osqp-0.4.0/osqp/src/osqp_sources/lin_sys/direct/qdldl |only osqp-0.4.0/osqp/src/osqp_sources/lin_sys/lib_handler.c | 2 osqp-0.4.0/osqp/src/osqp_sources/src/auxil.c | 54 +- osqp-0.4.0/osqp/src/osqp_sources/src/cs.c | 40 +- osqp-0.4.0/osqp/src/osqp_sources/src/lin_sys.c | 40 +- osqp-0.4.0/osqp/src/osqp_sources/src/osqp.c | 4 osqp-0.4.0/osqp/src/osqp_sources/src/util.c | 68 --- osqp-0.4.0/osqp/src/osqp_sources/tests/basic_qp/test_basic_qp.h | 20 - osqp-0.4.0/osqp/src/osqp_sources/tests/basic_qp2/test_basic_qp2.h | 20 - osqp-0.4.0/osqp/src/osqp_sources/tests/generate_tests_data.py | 6 osqp-0.4.0/osqp/src/osqp_sources/tests/non_cvx |only osqp-0.4.0/osqp/src/osqp_sources/tests/osqp_tester.c | 7 osqp-0.4.0/osqp/src/osqp_sources/tests/osqp_tester.h |only osqp-0.4.0/osqp/src/osqp_sources/tests/solve_linsys/generate_problem.py | 4 osqp-0.4.0/osqp/src/osqp_sources/tests/solve_linsys/test_solve_linsys.h | 23 - osqp-0.4.0/osqp/src/osqp_sources/tests/unconstrained |only osqp-0.4.0/osqp/src/osqp_sources/tests/update_matrices/test_update_matrices.h | 6 osqp-0.4.0/osqp/src/osqp_sources/tests/utils/codegen_utils.py | 35 + osqp-0.4.0/osqp/src/qdldl_types_R.h |only 62 files changed, 461 insertions(+), 400 deletions(-)
Title: Linear Model Evaluation with Randomized Residuals in a
Permutation Procedure
Description: Linear model calculations are made for many random versions of data.
Using residual randomization in a permutation procedure, sums of squares are
calculated over many permutations to generate empirical probability distributions
for evaluating model effects. This method is described by
Collyer, Sekora, & Adams (2015) <doi:10.1038/hdy.2014.75>. Additionally, coefficients, statistics, fitted values, and residuals generated over many
permutations can be used for various procedures including pairwise tests, prediction, classification, and
model comparison. This package should provide most tools one could need for the analysis of
high-dimensional data, especially in ecology and evolutionary biology, but certainly other fields, as well.
Author: Michael Collyer, Dean Adams
Maintainer: Michael Collyer <mlcollyer@gmail.com>
Diff between RRPP versions 0.2.0 dated 2018-04-22 and 0.3.0 dated 2018-07-23
DESCRIPTION | 15 - MD5 | 41 +- NAMESPACE | 8 NEWS | 17 + R/RRPP.support.code.r | 253 ++++++++++++++--- R/RRPP.utils.r | 233 +++++++++++++++- R/anova.lm.rrpp.r | 4 R/classify.r |only R/lm.rrpp.r | 34 +- R/model.comparison.r |only R/pairwise.r | 39 ++ build/vignette.rds |binary inst/doc/Collyer.Adams.2018.MEE.Appendix.S2.Rmd | 2 inst/doc/Collyer.Adams.2018.MEE.Appendix.S2.html | 329 +++++++++++++++++++---- man/classify.Rd |only man/lm.rrpp.Rd | 4 man/model.comparison.Rd |only man/pairwise.Rd | 18 + man/plot.model.comparison.Rd |only man/plot.predict.lm.rrpp.Rd | 2 man/print.classify.Rd |only man/print.model.comparison.Rd |only man/summary.classify.Rd |only man/summary.model.comparison.Rd |only man/summary.pairwise.Rd | 5 vignettes/Collyer.Adams.2018.MEE.Appendix.S2.Rmd | 2 26 files changed, 851 insertions(+), 155 deletions(-)
Title: Semantic Annotation and Discoverability System for R-Based
Artifacts
Description: Automatically annotates R-based artifacts
with relevant descriptive and provenance-related
and provides a backend-agnostic storage and
discoverability system for organizing, retrieving, and
interrogating such artifacts.
Author: Gabriel Becker [aut, cre],
Sara Moore [aut]
Maintainer: Gabriel Becker <becker.gabriel@gene.com>
Diff between trackr versions 0.7.5 dated 2018-03-01 and 0.9.4 dated 2018-07-23
trackr-0.7.5/trackr/inst/test_docs/test_hook.html |only trackr-0.7.5/trackr/inst/test_docs/test_hook_cache |only trackr-0.7.5/trackr/inst/test_docs/test_hook_files |only trackr-0.7.5/trackr/inst/toyplotcorpus.R |only trackr-0.7.5/trackr/man/checkPandoc.Rd |only trackr-0.9.4/trackr/DESCRIPTION | 20 +-- trackr-0.9.4/trackr/MD5 | 111 +++++++---------- trackr-0.9.4/trackr/NAMESPACE | 9 + trackr-0.9.4/trackr/R/Classes.R | 21 ++- trackr-0.9.4/trackr/R/Generics.R | 78 ++++++++---- trackr-0.9.4/trackr/R/ObjFeatureSet.R | 106 +++++++++++++++-- trackr-0.9.4/trackr/R/PlotWrapper.R | 56 ++++----- trackr-0.9.4/trackr/R/Trackr-main-API.R | 82 +++++++++---- trackr-0.9.4/trackr/R/accessor-methods.R | 2 trackr-0.9.4/trackr/R/backend-impls.R | 108 +++++++++++------ trackr-0.9.4/trackr/R/coercerender.R | 14 ++ trackr-0.9.4/trackr/R/ggplotversions.R | 100 +++++++++++++++- trackr-0.9.4/trackr/R/knitr.R | 130 ++++++++++++--------- trackr-0.9.4/trackr/R/recordFile.R |only trackr-0.9.4/trackr/build/vignette.rds |binary trackr-0.9.4/trackr/inst/doc/Extending-trackr.pdf |binary trackr-0.9.4/trackr/inst/doc/index.Rmd | 35 ++++- trackr-0.9.4/trackr/inst/doc/index.html | 81 +++++-------- trackr-0.9.4/trackr/inst/test_docs/knitr_test.Rmd | 9 - trackr-0.9.4/trackr/inst/test_docs/knitr_test.html | 32 +---- trackr-0.9.4/trackr/man/annotationText-methods.Rd | 3 trackr-0.9.4/trackr/man/codeInfo-methods.Rd | 3 trackr-0.9.4/trackr/man/coordSystem-methods.Rd | 3 trackr-0.9.4/trackr/man/dataLabels-methods.Rd | 3 trackr-0.9.4/trackr/man/dataTypes-methods.Rd | 12 + trackr-0.9.4/trackr/man/describePackage-methods.Rd | 3 trackr-0.9.4/trackr/man/featureset-classes.Rd | 4 trackr-0.9.4/trackr/man/fset_constructors.Rd | 10 + trackr-0.9.4/trackr/man/fullData-methods.Rd | 3 trackr-0.9.4/trackr/man/geomObject-methods.Rd | 3 trackr-0.9.4/trackr/man/graphSys-methods.Rd | 3 trackr-0.9.4/trackr/man/groupInfo-methods.Rd | 3 trackr-0.9.4/trackr/man/hasLegend-methods.Rd | 3 trackr-0.9.4/trackr/man/interface-api.Rd | 1 trackr-0.9.4/trackr/man/knit_and_record.Rd | 39 ++++-- trackr-0.9.4/trackr/man/main-api.Rd | 79 +++++++++--- trackr-0.9.4/trackr/man/makeFeatureSet.Rd | 8 - trackr-0.9.4/trackr/man/make_image_files.Rd |only trackr-0.9.4/trackr/man/nLayers-methods.Rd | 3 trackr-0.9.4/trackr/man/nObs-methods.Rd | 3 trackr-0.9.4/trackr/man/objCode-methods.Rd | 3 trackr-0.9.4/trackr/man/position-methods.Rd | 3 trackr-0.9.4/trackr/man/regDateTime-methods.Rd | 3 trackr-0.9.4/trackr/man/statTransform-methods.Rd | 3 trackr-0.9.4/trackr/man/tags-methods.Rd | 3 trackr-0.9.4/trackr/man/titles-methods.Rd | 7 - trackr-0.9.4/trackr/man/user-methods.Rd | 3 trackr-0.9.4/trackr/tests/ggplot_extraction.R |only trackr-0.9.4/trackr/tests/trackr-tests.R | 22 +-- trackr-0.9.4/trackr/vignettes/index.Rmd | 35 ++++- 55 files changed, 851 insertions(+), 414 deletions(-)
Title: Functions that Apply to Rows and Columns of Matrices (and to
Vectors)
Description: High-performing functions operating on rows and columns of matrices, e.g. col / rowMedians(), col / rowRanks(), and col / rowSds(). Functions optimized per data type and for subsetted calculations such that both memory usage and processing time is minimized. There are also optimized vector-based methods, e.g. binMeans(), madDiff() and weightedMedian().
Author: Henrik Bengtsson [aut, cre, cph],
Hector Corrada Bravo [ctb],
Robert Gentleman [ctb],
Ola Hossjer [ctb],
Harris Jaffee [ctb],
Dongcan Jiang [ctb],
Peter Langfelder [ctb],
Peter Hickey [ctb]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between matrixStats versions 0.53.1 dated 2018-02-11 and 0.54.0 dated 2018-07-23
DESCRIPTION | 8 ++++---- MD5 | 34 +++++++++++++++++----------------- NEWS | 22 ++++++++++++++++++++++ R/indexByRow.R | 3 +-- R/rowAvgsPerColSet.R | 9 +++++---- R/rowLogSumExps.R | 6 ++++-- R/weightedMad.R | 18 ++++++++++++------ R/x_OP_y.R | 16 ++++++++++++---- build/vignette.rds |binary inst/doc/matrixStats-methods.html | 4 ++-- man/rowAvgsPerColSet.Rd | 2 +- src/anyMissing.c | 22 +++++++++------------- src/indexByRow.c | 4 ++-- src/sum2.c | 4 ++-- src/sum2_lowlevel.h | 14 +++++++------- src/sum2_lowlevel_template.h | 4 ++-- src/x_OP_y.c | 4 +++- tests/indexByRow.R | 4 ++++ 18 files changed, 109 insertions(+), 69 deletions(-)
Title: Gradient Boosting
Description: Functional gradient descent algorithm for a variety of convex and non-convex loss functions, for both classical and robust regression and classification problems. See Wang (2011) <doi:10.2202/1557-4679.1304>, Wang (2012) <doi:10.3414/ME11-02-0020>, Wang (2018) <doi:10.1080/10618600.2018.1424635>, Wang (2018) <doi:10.1214/18-EJS1404>.
Author: Zhu Wang [aut, cre],
Torsten Hothorn [ctb]
Maintainer: Zhu Wang <zwang@connecticutchildrens.org>
Diff between bst versions 0.3-14 dated 2016-09-21 and 0.3-15 dated 2018-07-23
bst-0.3-14/bst/man/bst-package.Rd |only bst-0.3-15/bst/DESCRIPTION | 12 +-- bst-0.3-15/bst/MD5 | 73 +++++++++++------------- bst-0.3-15/bst/NAMESPACE | 4 - bst-0.3-15/bst/NEWS | 8 ++ bst-0.3-15/bst/R/bst.R | 24 +++++-- bst-0.3-15/bst/R/mbst.R | 1 bst-0.3-15/bst/R/mhingebst.R | 1 bst-0.3-15/bst/R/rbst.R | 25 +------- bst-0.3-15/bst/R/rmbst.R | 1 bst-0.3-15/bst/TODO | 2 bst-0.3-15/bst/build/vignette.rds |binary bst-0.3-15/bst/inst/CITATION | 31 ++++++++++ bst-0.3-15/bst/inst/doc/cancer.R | 2 bst-0.3-15/bst/inst/doc/cancer.Rnw | 11 +-- bst-0.3-15/bst/inst/doc/cancer.pdf |binary bst-0.3-15/bst/inst/doc/khan.Rnw | 2 bst-0.3-15/bst/inst/doc/khan.pdf |binary bst-0.3-15/bst/inst/doc/mcl.Rnw | 2 bst-0.3-15/bst/inst/doc/mcl.pdf |binary bst-0.3-15/bst/inst/doc/pros.pdf |binary bst-0.3-15/bst/inst/doc/static_cancer.pdf |binary bst-0.3-15/bst/inst/doc/static_cancer.pdf.asis | 2 bst-0.3-15/bst/inst/doc/static_khan.pdf.asis | 2 bst-0.3-15/bst/inst/doc/static_mcl.pdf.asis | 2 bst-0.3-15/bst/man/bst_control.Rd | 14 ++-- bst-0.3-15/bst/man/cv.rbst.Rd | 12 +-- bst-0.3-15/bst/man/cv.rmbst.Rd | 8 +- bst-0.3-15/bst/man/rbst.Rd | 21 +++++- bst-0.3-15/bst/man/rbstpath.Rd | 8 +- bst-0.3-15/bst/man/rmbst.Rd | 12 +++ bst-0.3-15/bst/vignettes/bst.bib | 14 ++-- bst-0.3-15/bst/vignettes/cancer.Rnw | 11 +-- bst-0.3-15/bst/vignettes/khan.Rnw | 2 bst-0.3-15/bst/vignettes/mcl.Rnw | 2 bst-0.3-15/bst/vignettes/static_cancer.pdf.asis | 2 bst-0.3-15/bst/vignettes/static_khan.pdf.asis | 2 bst-0.3-15/bst/vignettes/static_mcl.pdf.asis | 2 38 files changed, 194 insertions(+), 121 deletions(-)
Title: Compute Krippendorff's Alpha
Description: Provides functions to compute and plot Krippendorff's inter-coder
reliability coefficient alpha and bootstrapped uncertainty estimates
(Krippendorff 2004, ISBN:0761915443). The bootstrap routines are set up to
make use of parallel threads where supported.
Author: Alexander Staudt [aut, cre], Pierre L'Ecuyer [ctb] (author of the C++ RNG code)
Maintainer: Alexander Staudt <staudtlex@live.de>
Diff between icr versions 0.5.4 dated 2018-05-12 and 0.5.5 dated 2018-07-23
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- configure.ac | 13 +++++++++++++ 3 files changed, 19 insertions(+), 6 deletions(-)
Title: Interactive Networks with R
Description: Create interactive networked coincidences. It joins the data analysis power of R to study coincidences and the visualization libraries of JavaScript in one package.
Author: Modesto Escobar <modesto@usal.es>,
David Barrios <metal@usal.es>,
Carlos Prieto <cprietos@usal.es>,
Luis Martinez-Uribe <lmartinez@usal.es>.
Maintainer: Modesto Escobar <modesto@usal.es>
Diff between netCoin versions 0.2.8 dated 2018-04-04 and 0.2.9 dated 2018-07-23
DESCRIPTION | 9 MD5 | 98 ++-- NAMESPACE | 6 R/barplot.R | 10 R/multigraph.R | 4 R/netcoin.R | 449 +++++++++++------- R/network.R | 426 ++++++++++------- R/timeline.R | 6 R/utils.R | 5 build/vignette.rds |binary data/families.RData |binary data/finches.RData |binary data/sociologists.RData |binary inst/doc/netCoin.R | 16 inst/doc/netCoin.Rmd | 22 inst/doc/netCoin.html | 387 +++------------- inst/www/en.js | 27 - inst/www/es.js | 29 - inst/www/functions.js | 49 +- inst/www/network.js | 1145 +++++++++++++++++++++++++----------------------- inst/www/styles.css | 82 ++- inst/www/timeline.js | 2 man/allNet.Rd | 2 man/asNodes.Rd | 2 man/barCoin.Rd | 6 man/cbarCoin.Rd | 4 man/coin.Rd | 2 man/coocur.rd | 2 man/dichotomize.Rd | 2 man/distant.Rd | 2 man/edgeList.Rd | 2 man/expectedList.Rd | 2 man/families.Rd | 4 man/fromIgraph.Rd | 4 man/incTime.Rd | 2 man/lower.Rd | 2 man/mobileEdges.Rd | 2 man/netCoin-package.Rd | 2 man/netCoin.Rd | 13 man/netCorr.Rd | 4 man/pathCoin.Rd | 2 man/plot.Rd | 2 man/print.Rd | 2 man/savePajek.Rd | 2 man/sim.Rd | 2 man/summary.Rd | 2 man/surCoin.Rd | 2 man/timeCoin.Rd | 2 man/toIgraph.Rd | 2 vignettes/netCoin.Rmd | 22 50 files changed, 1473 insertions(+), 1398 deletions(-)
Title: Gaussian Process Modeling of Multi-Response Datasets
Description: Provides a general and efficient tool for fitting a response surface to datasets via Gaussian processes. The dataset can have multiple responses and the fitted GP model can predict the gradient as well. The package is based on the work of Bostanabad, R., Kearney, T., Tao, S. Y., Apley, D. W. & Chen, W. (2018) Leveraging the nugget parameter for efficient Gaussian process modeling. International Journal for Numerical Methods in Engineering, 114, 501-516.
Author: Ramin Bostanabad, Wei Chen (IDEAL)
Maintainer: Ramin Bostanabad <bostanabad@u.northwestern.edu>
Diff between GPM versions 1.0.1 dated 2018-06-03 and 1.0.2 dated 2018-07-23
DESCRIPTION | 10 +++++----- MD5 | 2 +- 2 files changed, 6 insertions(+), 6 deletions(-)
Title: Bayesian Genomic Linear Models Applied to GE Genome Selection
Description: Application of genome prediction for a continuous variable, focused
on genotype by environment (GE) genomic selection models (GS). It consists a group of functions
that help to create regression kernels for some GE genomic models proposed by Jarquín et al. (2014) <doi:10.1007/s00122-013-2243-1>
and Lopez-Cruz et al. (2015) <doi:10.1534/g3.114.016097>. Also, it computes genomic predictions based on Bayesian approaches.
The prediction function uses an orthogonal transformation of the data and specific priors
present by Cuevas et al. (2014) <doi:10.1534/g3.114.013094>.
Author: Italo Granato [aut, cre],
Luna-Vázquez Francisco J. [aut],
Cuevas Jaime [aut]
Maintainer: Italo Granato <italo.granato@gmail.com>
Diff between BGGE versions 0.6.3 dated 2018-05-16 and 0.6.4 dated 2018-07-23
BGGE-0.6.3/BGGE/README.md |only BGGE-0.6.4/BGGE/DESCRIPTION | 8 ++++---- BGGE-0.6.4/BGGE/MD5 | 8 ++++---- BGGE-0.6.4/BGGE/NEWS.md |only BGGE-0.6.4/BGGE/R/BGGE.R | 21 ++++++++++----------- BGGE-0.6.4/BGGE/man/BGGE.Rd | 5 ++++- 6 files changed, 22 insertions(+), 20 deletions(-)
Title: eBird Data Extraction and Processing with AWK
Description: Extract and process bird sightings records from eBird
(<http://ebird.org>), an online tool for recording bird observations.
Public access to the full eBird database is via the eBird Basic Dataset
(EBD; see <http://ebird.org/ebird/data/download> for access), a downloadable
text file. This package is an interface to AWK for extracting data from the
EBD based on taxonomic, spatial, or temporal filters, to produce a
manageable file size that can be imported into R.
Author: Matthew Strimas-Mackey [aut, cre]
(<https://orcid.org/0000-0001-8929-7776>),
Eliot Miller [aut],
Wesley Hochachka [aut],
Cornell Lab of Ornithology [cph]
Maintainer: Matthew Strimas-Mackey <mes335@cornell.edu>
Diff between auk versions 0.2.1 dated 2018-03-28 and 0.2.2 dated 2018-07-23
DESCRIPTION | 8 MD5 | 148 +- NEWS.md | 9 R/auk-breeding.r | 1 R/auk-clean.r | 7 R/auk-complete.r | 1 R/auk-country.r | 1 R/auk-date.r | 1 R/auk-distance.r | 1 R/auk-duration.r | 1 R/auk-ebd.r | 4 R/auk-extent.r | 1 R/auk-filter.r | 21 R/auk-getpath.r | 1 R/auk-last-edited.r | 1 R/auk-project.r | 1 R/auk-protocol.r | 1 R/auk-rollup.r | 1 R/auk-sampling.r | 1 R/auk-select.r | 1 R/auk-species.r | 3 R/auk-split.r | 5 R/auk-state.r | 1 R/auk-time.r | 1 R/auk-unique.r | 4 R/auk-version-date.r | 1 R/auk-zerofill.r | 1 R/data.r | 2 R/ebird-species.r | 24 R/read.r | 4 R/utils.r | 2 R/zzz.r | 2 build/vignette.rds |binary inst/doc/auk.Rmd | 4 inst/doc/auk.html | 1044 +++++++++------ inst/doc/development.html | 334 +++- inst/extdata/ebd-rollup-ex.txt | 44 inst/extdata/ebd-sample.txt | 1002 +++++++------- inst/extdata/ebd-sample_messy.txt | 102 - inst/extdata/zerofill-ex_ebd.txt | 534 +++---- inst/extdata/zerofill-ex_sampling.txt | 2315 +++++++++++++++++----------------- man/auk_breeding.Rd | 10 man/auk_clean.Rd | 5 man/auk_complete.Rd | 10 man/auk_country.Rd | 10 man/auk_date.Rd | 10 man/auk_distance.Rd | 10 man/auk_duration.Rd | 10 man/auk_ebd.Rd | 4 man/auk_extent.Rd | 10 man/auk_filter.Rd | 14 man/auk_getpath.Rd | 5 man/auk_last_edited.Rd | 10 man/auk_project.Rd | 10 man/auk_protocol.Rd | 10 man/auk_rollup.Rd | 4 man/auk_sampling.Rd | 4 man/auk_select.Rd | 5 man/auk_species.Rd | 10 man/auk_split.Rd | 5 man/auk_state.Rd | 10 man/auk_time.Rd | 10 man/auk_unique.Rd | 4 man/auk_version_date.Rd | 5 man/auk_zerofill.Rd | 12 man/ebird_species.Rd | 21 man/ebird_states.Rd | 4 man/ebird_taxonomy.Rd | 4 man/read_ebd.Rd | 10 tests/testthat/test_auk-clean.r | 4 tests/testthat/test_auk-filter.r | 8 tests/testthat/test_auk-keep-drop.r | 4 tests/testthat/test_auk-split.r | 4 tests/testthat/test_ebird-species.r | 11 vignettes/auk.Rmd | 4 75 files changed, 3306 insertions(+), 2605 deletions(-)
Title: Text Cleaning Tools
Description: Tools to clean and process text. Tools are geared at checking for substrings that
are not optimal for analysis and replacing or removing them (normalizing) with more
analysis friendly substrings (see Sproat, Black, Chen, Kumar, Ostendorf, & Richards
(2001) <doi:10.1006/csla.2001.0169>) or extracting them into new variables. For
example, emoticons are often used in text but not always easily handled by analysis
algorithms. The replace_emoticon() function replaces emoticons with word
equivalents.
Author: Tyler Rinker [aut, cre],
ctwheels StackOverflow [ctb]
Maintainer: Tyler Rinker <tyler.rinker@gmail.com>
Diff between textclean versions 0.9.2 dated 2018-06-09 and 0.9.3 dated 2018-07-23
DESCRIPTION | 11 +++++---- MD5 | 18 +++++++-------- NAMESPACE | 4 +-- NEWS | 7 ++++++ R/glue-reexports.R | 4 +-- R/replace_time.R | 4 +-- README.md | 60 ++++++++++++++++++++++++++-------------------------- inst/CITATION | 4 +-- man/reexports.Rd | 4 +-- man/replace_time.Rd | 4 +-- 10 files changed, 64 insertions(+), 56 deletions(-)
More information about samplesize4surveys at CRAN
Permanent link
Title: Metagenome Coverage Estimation and Projections for 'Nonpareil'
Description: Plot, process, and analyze NPO files produced by
'Nonpareil' <http://enve-omics.ce.gatech.edu/nonpareil>.
Author: Luis M. Rodriguez-R [aut, cre]
Maintainer: Luis M. Rodriguez-R <lmrodriguezr@gmail.com>
Diff between Nonpareil versions 3.3.1 dated 2018-03-22 and 3.3.2 dated 2018-07-23
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/Nonpareil.R | 7 +++++-- man/Nonpareil.legend.Rd | 3 ++- 4 files changed, 13 insertions(+), 9 deletions(-)
Title: Network Meta-Analysis using Integrated Nested Laplace
Approximations
Description: Performs network meta-analysis using integrated nested Laplace approximations ('INLA'). Includes methods to assess the heterogeneity and inconsistency in the network. Contains more than ten different network meta-analysis data. 'INLA' package can be obtained from <http://www.r-inla.org>. We recommend the testing version.
Author: Burak Kuersad Guenhan [aut, cre]
Maintainer: Burak Kuersad Guenhan <burak.gunhan@med.uni-goettingen.de>
Diff between nmaINLA versions 0.1.1 dated 2017-06-23 and 0.1.2 dated 2018-07-23
DESCRIPTION | 10 +++++----- MD5 | 24 ++++++++++++------------ R/nmaINLA.R | 7 +++---- R/nma_inla.R | 27 ++++++++++++++++----------- build/vignette.rds |binary data/Diabetesdat.rda |binary inst/CITATION | 26 ++++++++++++++------------ inst/doc/nmaINLA.R | 3 ++- inst/doc/nmaINLA.Rnw | 7 ++++--- inst/doc/nmaINLA.pdf |binary man/nmaINLA.Rd | 8 ++++---- vignettes/nmaINLA.Rnw | 7 ++++--- vignettes/references.bib | 18 +++++++++++++----- 13 files changed, 77 insertions(+), 60 deletions(-)
Title: Generate XMR Control Chart Data from Time-Series Data
Description: XMRs combine X-Bar control charts and Moving Range control charts. These functions also will recalculate the reference lines when significant change has occurred.
Author: Alex Zanidean [aut, cre]
Maintainer: Alex Zanidean <AZanidean@mhc.ab.ca>
Diff between xmrr versions 1.0.1 dated 2018-02-01 and 1.0.36 dated 2018-07-23
xmrr-1.0.1/xmrr/LICENSE |only xmrr-1.0.36/xmrr/DESCRIPTION | 11 - xmrr-1.0.36/xmrr/MD5 | 32 ++-- xmrr-1.0.36/xmrr/NEWS.md |only xmrr-1.0.36/xmrr/R/xmR.R | 65 +++++----- xmrr-1.0.36/xmrr/R/xmR_chart.R | 17 +- xmrr-1.0.36/xmrr/README.md | 25 +++ xmrr-1.0.36/xmrr/build/vignette.rds |binary xmrr-1.0.36/xmrr/inst/doc/xmR.html | 4 xmrr-1.0.36/xmrr/man/xmr.Rd | 28 +--- xmrr-1.0.36/xmrr/man/xmr_chart.Rd | 4 xmrr-1.0.36/xmrr/tests/testthat.R | 4 xmrr-1.0.36/xmrr/tests/testthat/test-xmr_basic.R | 7 - xmrr-1.0.36/xmrr/tests/testthat/test-xmr_recalc_lowerlongrun.R | 8 - xmrr-1.0.36/xmrr/tests/testthat/test-xmr_recalc_shortruns.R | 6 xmrr-1.0.36/xmrr/tests/testthat/test-xmr_recalc_shortruns_4.R | 4 xmrr-1.0.36/xmrr/tests/testthat/test-xmr_recalc_upperlongrun.R | 12 - xmrr-1.0.36/xmrr/tests/testthat/test-xmr_single_longrunrunvector.R | 28 +++- 18 files changed, 156 insertions(+), 99 deletions(-)
Title: Tools to Quickly and Neatly Summarize Data
Description: Data frame summaries, cross-tabulations,
weight-enabled frequency tables and common univariate
statistics in concise tables available in a variety of
formats (plain ASCII, Markdown and HTML). A good
point-of-entry for exploring data, both for experienced
and new R users.
Author: Dominic Comtois
Maintainer: Dominic Comtois <dominic.comtois@gmail.com>
Diff between summarytools versions 0.8.6 dated 2018-07-20 and 0.8.7 dated 2018-07-23
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ NEWS | 6 ++++++ R/dfSummary.R | 5 +++-- R/print.summarytools.R | 6 ++++-- inst/doc/Introduction.html | 4 ++-- inst/doc/Recommendations-rmarkdown.html | 4 ++-- 7 files changed, 26 insertions(+), 17 deletions(-)
Title: Estimating the Parameters of a Continuous-Time Markov Chain from
Discrete-Time Data
Description: Functions for estimating Markov generator matrices from discrete-time observations. The implemented approaches comprise diagonal adjustment, weighted adjustment and quasi-optimization of matrix logarithm based candidate solutions, an expectation-maximization algorithm as well as a Gibbs sampler.
Author: Marius Pfeuffer [aut,cre], Greig Smith [ctb], Goncalo dos Reis [ctb], Linda Moestel [ctb], Matthias Fischer [ctb]
Maintainer: Marius Pfeuffer <marius.pfeuffer@fau.de>
Diff between ctmcd versions 1.3.5 dated 2018-06-03 and 1.4.0 dated 2018-07-23
DESCRIPTION | 10 +++++----- MD5 | 6 +++--- R/tmci.R | 4 ---- build/partial.rdb |binary 4 files changed, 8 insertions(+), 12 deletions(-)
Title: Pseudo-Ranks
Description: Efficient calculation of pseudo-ranks. In case of equal sample sizes, pseudo-ranks and mid-ranks are equal. When used for inference mid-ranks may lead to paradoxical results. Pseudo-ranks are in general not affected by such a problem. For details, see Brunner, E., Bathke A. C. and Konietschke, F: Rank- and Pseudo-Rank Procedures in Factorial Designs - Using R and SAS, Springer Verlag, to appear.
Author: Martin Happ [aut, cre] (<https://orcid.org/0000-0003-0009-2665>),
Georg Zimmermann [aut],
Arne C. Bathke [aut],
Edgar Brunner [aut]
Maintainer: Martin Happ <martin.happ@aon.at>
Diff between pseudorank versions 0.2.0 dated 2018-06-12 and 0.2.5 dated 2018-07-23
DESCRIPTION | 9 - MD5 | 29 ++- NAMESPACE | 13 - R/RcppExports.R | 16 + R/S3method.R | 59 ++++--- R/hettmansperger.R | 239 +++++++++++++++-------------- R/pseudoranks.R | 87 +++++++--- README.md | 57 ++++++ man/hettmansperger_norton_test.Rd |only man/hettmansperger_norton_test_internal.Rd |only man/psrank.Rd | 25 +-- man/recursiveCalculation.Rd | 5 src/Makevars.in |only src/RcppExports.cpp | 50 +++++- src/pseudorank.cpp | 166 +++++++++++++++++--- tests/testthat/test.R | 60 ++++--- tests/testthat/test_hettmansperger.R |only tests/testthat/test_min_max.R |only 18 files changed, 562 insertions(+), 253 deletions(-)
Title: Fits a Principal Curve in Arbitrary Dimension
Description: Fitting a principal curve to a data matrix in arbitrary dimensions.
Author: Trevor Hastie [aut],
Andreas Weingessel [aut],
Kurt Hornik [aut] (<https://orcid.org/0000-0003-4198-9911>),
Henrik Bengtsson [ctb] (HenrikBengtsson),
Robrecht Cannoodt [aut, cre] (<https://orcid.org/0000-0003-3641-729X>,
rcannood)
Maintainer: Robrecht Cannoodt <rcannood@gmail.com>
Diff between princurve versions 2.1.0 dated 2018-07-14 and 2.1.1 dated 2018-07-23
DESCRIPTION | 25 +++++++++----------- MD5 | 32 ++++++++++++++++++-------- R/bias_correct_curve.R | 2 - R/data.R |only R/principal_curve.R | 4 +-- R/start_circle.R | 2 - README.md | 39 +++++++++++++++++++++++++++++--- build |only data |only inst/NEWS | 17 +++++++++++++- inst/doc |only man/benchmarks.Rd |only man/figures/README_compare-1.png |only src/project_to_curve.cpp | 8 +++--- tests/testthat/test-legacy_princurve.R | 40 +-------------------------------- tests/testthat/test-principal_curve.R | 2 - tests/testthat/test-timings.R |only vignettes |only 18 files changed, 98 insertions(+), 73 deletions(-)
Title: 'sf'-Compatible Interface to 'Google Maps' APIs
Description: Interface to the 'Google Maps' APIs: (1) routing directions based on the 'Directions' API, returned as 'sf' objects, either as single feature per alternative route, or a single feature per segment per alternative route; (2) travel distance or time matrices based on the 'Distance Matrix' API; (3) geocoded locations based on the 'Geocode' API, returned as 'sf' objects, either points or bounds.
Author: Michael Dorman [aut, cre],
Tom Buckley [ctb]
Maintainer: Michael Dorman <dorman@post.bgu.ac.il>
Diff between mapsapi versions 0.3.5 dated 2018-03-12 and 0.3.7 dated 2018-07-23
DESCRIPTION | 6 +-- MD5 | 26 ++++++------- NEWS.md | 9 ++++ R/data.R | 4 ++ R/mp_directions.R | 10 ++--- R/mp_geocode.R | 5 +- R/mp_get_matrix.R | 97 +++++++++++++++++++++++++++++++++++++-------------- R/mp_matrix.R | 5 +- build/vignette.rds |binary inst/doc/intro.html | 20 +++++----- man/mp_directions.Rd | 8 +++- man/mp_geocode.Rd | 7 ++- man/mp_get_matrix.Rd | 36 ++++++++++++++++-- man/mp_matrix.Rd | 7 ++- 14 files changed, 169 insertions(+), 71 deletions(-)
Title: Computing Log-Transformed Kernel Density Estimates for Positive
Data
Description: Computes log-transformed kernel density estimates for positive data using a variety of kernels. It follows the methods
described in Jones, Nguyen and McLachlan (2018) <arXiv:1804.08365>.
Author: Hien D. Nguyen, Andrew T. Jones, and Geoffrey J. McLachlan
Maintainer: Andrew Thomas Jones <andrewthomasjones@gmail.com>
Diff between logKDE versions 0.1.0 dated 2018-04-25 and 0.3.0 dated 2018-07-23
DESCRIPTION | 10 ++++++---- MD5 | 14 ++++++++++---- NEWS.md | 6 ++++++ README.md | 49 +++++++++++++++++++++++++++++++++++++++++++++++++ build |only inst |only man/figures |only src/logKDE.cpp | 42 +++++++++++++++++++++--------------------- vignettes |only 9 files changed, 92 insertions(+), 29 deletions(-)
Title: Documentation for 'distr' Family of R Packages
Description: Provides documentation in form of a common vignette to packages 'distr', 'distrEx',
'distrMod', 'distrSim', 'distrTEst', 'distrTeach', and 'distrEllipse'.
Author: Florian Camphausen [ctb] (contributed as student to the documented
packages in the initial phase --2005),
Matthias Kohl [aut, cph],
Peter Ruckdeschel [cre, cph],
Thomas Stabla [ctb] (contributed as student to the documented packages
in the initial phase --2005)
Maintainer: Peter Ruckdeschel <peter.ruckdeschel@uni-oldenburg.de>
Diff between distrDoc versions 2.6 dated 2016-04-24 and 2.7.1 dated 2018-07-23
DESCRIPTION | 22 +- MD5 | 22 +- NAMESPACE | 1 build/vignette.rds |binary inst/CITATION | 8 inst/NEWS | 16 + inst/TOBEDONE | 2 inst/doc/distr.R | 443 +++++++++++++---------------------------------- inst/doc/distr.Rnw | 222 ++++++++++++++--------- inst/doc/distr.pdf |binary man/0distrDoc-package.Rd | 6 vignettes/distr.Rnw | 222 ++++++++++++++--------- 12 files changed, 446 insertions(+), 518 deletions(-)
Title: Meta-Analysis for Diagnostic Test Studies
Description: Bayesian inference analysis for bivariate meta-analysis of diagnostic test studies using integrated nested Laplace approximation with INLA. A purpose built graphic user interface is available. The installation of R package INLA is compulsory for successful usage. The INLA package can be obtained from <http://www.r-inla.org>. We recommend the testing version, which can be downloaded by running: install.packages("INLA", repos=c(getOption("repos"), INLA="https://inla.r-inla-download.org/R/testing"), dep=TRUE).
Author: Jingyi Guo <jingyi.guo@math.ntnu.no> and Andrea Riebler <andrea.riebler@math.ntnu.no>
Maintainer: Jingyi Guo <jingyi.guo@math.ntnu.no>
Diff between meta4diag versions 2.0.7 dated 2018-02-16 and 2.0.8 dated 2018-07-23
DESCRIPTION | 14 +++++++------- MD5 | 26 +++++++++++++------------- R/makeData.R | 2 +- R/makeObject.R | 2 +- R/makePriors.R | 2 +- R/meta4diag.R | 2 +- R/meta4diagGUI.R | 2 +- R/runModel.R | 2 +- data/Catheter.rda |binary data/Scheidler.rda |binary data/Telomerase.rda |binary data/table_cor.rda |binary data/table_var.rda |binary inst/etc/welcometext.txt | 4 ++-- 14 files changed, 28 insertions(+), 28 deletions(-)
Title: Estimation and Testing Classes Based on Package 'distr'
Description: Evaluation (S4-)classes based on package distr for evaluating procedures
(estimators/tests) at data/simulation in a unified way.
Author: Florian Camphausen [ctb] (contributed as student in the initial phase
--2005),
Matthias Kohl [aut, cph],
Peter Ruckdeschel [cre, cph],
Thomas Stabla [ctb] (contributed as student in the initial phase
--2005)
Maintainer: Peter Ruckdeschel <peter.ruckdeschel@uni-oldenburg.de>
Diff between distrTEst versions 2.6 dated 2016-04-23 and 2.7.0 dated 2018-07-23
DESCRIPTION | 16 ++++++++-------- MD5 | 10 +++++----- inst/CITATION | 2 +- inst/NEWS | 11 +++++++++++ inst/TOBEDONE | 2 +- man/0distrTEst-package.Rd | 6 +++--- 6 files changed, 29 insertions(+), 18 deletions(-)
Title: Simulation Classes Based on Package 'distr'
Description: S4-classes for setting up a coherent framework for simulation within the distr
family of packages.
Author: Florian Camphausen [ctb] (contributed as student in the initial phase
--2005),
Matthias Kohl [aut, cph],
Peter Ruckdeschel [cre, cph],
Thomas Stabla [ctb] (contributed as student in the initial phase
--2005)
Maintainer: Peter Ruckdeschel <peter.ruckdeschel@uni-oldenburg.de>
Diff between distrSim versions 2.6 dated 2016-04-23 and 2.7.0 dated 2018-07-23
DESCRIPTION | 16 ++++++++-------- MD5 | 10 +++++----- inst/CITATION | 2 +- inst/NEWS | 6 ++++++ inst/TOBEDONE | 2 +- man/0distrSim-package.Rd | 8 ++++---- 6 files changed, 25 insertions(+), 19 deletions(-)
Title: Distribution Classes for Distributions from Rmetrics
Description: S4-distribution classes based on package distr for distributions from packages
'fBasics' and 'fGarch'.
Author: Peter Ruckdeschel [cre, cph, aut]
Maintainer: Peter Ruckdeschel <peter.ruckdeschel@uni-oldenburg.de>
Diff between distrRmetrics versions 2.6 dated 2016-04-23 and 2.7.0 dated 2018-07-23
DESCRIPTION | 14 +++++++------- MD5 | 12 ++++++------ inst/CITATION | 2 +- inst/NEWS | 12 +++++++++++- man/0distrRmetrics-package.Rd | 8 ++++---- man/SNorm-class.Rd | 1 + man/SSTd-class.Rd | 1 + 7 files changed, 31 insertions(+), 19 deletions(-)
Title: S4 Classes for Elliptically Contoured Distributions
Description: Distribution (S4-)classes for elliptically contoured distributions (based on
package 'distr').
Author: Peter Ruckdeschel [aut, cre, cph]
Maintainer: Peter Ruckdeschel <peter.ruckdeschel@uni-oldenburg.de>
Diff between distrEllipse versions 2.6.2 dated 2016-09-04 and 2.7.0 dated 2018-07-23
distrEllipse-2.6.2/distrEllipse/man/distrEllipse-deprecated.Rd |only distrEllipse-2.7.0/distrEllipse/DESCRIPTION | 20 +++--- distrEllipse-2.7.0/distrEllipse/MD5 | 18 ++--- distrEllipse-2.7.0/distrEllipse/NAMESPACE | 1 distrEllipse-2.7.0/distrEllipse/R/AllGenerics.R | 21 +++--- distrEllipse-2.7.0/distrEllipse/R/SphericalDistribution.R | 33 +++++----- distrEllipse-2.7.0/distrEllipse/inst/CITATION | 4 - distrEllipse-2.7.0/distrEllipse/inst/NEWS | 15 ++++ distrEllipse-2.7.0/distrEllipse/man/0distrEllipse-package.Rd | 8 +- distrEllipse-2.7.0/distrEllipse/man/SphericalDistribution-class.Rd | 13 +-- distrEllipse-2.7.0/distrEllipse/man/distrEllipse-defunct.Rd |only 11 files changed, 71 insertions(+), 62 deletions(-)
Title: Incomplete Block Designs
Description: A collection of several utility functions related to binary incomplete block designs. The package contains function to generate A- and D-efficient binary incomplete block designs with given numbers of treatments, number of blocks and block size. The package also contains function to generate an incomplete block design with specified concurrence matrix. There are functions to generate balanced treatment incomplete block designs and incomplete block designs for test versus control treatments comparisons with specified concurrence matrix. Package also allows performing analysis of variance of data and computing estimated marginal means of factors from experiments using a connected incomplete block design. Tests of hypothesis of treatment contrasts in incomplete block design set up is supported.
Author: B N Mandal [aut, cre]
Maintainer: B N Mandal <mandal.stat@gmail.com>
Diff between ibd versions 1.3 dated 2018-07-04 and 1.4 dated 2018-07-23
DESCRIPTION | 8 MD5 | 13 NAMESPACE | 2 R/ibd.R | 1656 +++++++++++++++++++++++++++++---------------------------- man/LIP.Rd | 3 man/btibgen.Rd |only man/g.Rd |only man/gts.Rd |only man/ibdtvc.Rd | 6 9 files changed, 886 insertions(+), 802 deletions(-)
Title: Rendering Word Documents with R Inline Code
Description: Serves for rendering MS Word documents with R inline code and inserting tables and plots.
Author: Tomas Hovorka
Maintainer: Tomas Hovorka <tomashovorka@seznam.cz>
Diff between WordR versions 0.3.0 dated 2018-04-26 and 0.3.1 dated 2018-07-23
WordR-0.3.0/WordR/R/addFlexTables.R |only WordR-0.3.0/WordR/man/addFlexTables.Rd |only WordR-0.3.1/WordR/DESCRIPTION | 8 ++++---- WordR-0.3.1/WordR/MD5 | 12 +++++------- WordR-0.3.1/WordR/NEWS.md | 4 ++++ WordR-0.3.1/WordR/R/WordR.R | 2 +- WordR-0.3.1/WordR/inst/doc/WordR.html | 4 ++-- WordR-0.3.1/WordR/man/WordR.Rd | 2 +- 8 files changed, 17 insertions(+), 15 deletions(-)
Title: Manipulation of Microsoft Word and PowerPoint Documents
Description: Access and manipulate 'Microsoft Word' and 'Microsoft PowerPoint' documents from R.
The package focuses on tabular and graphical reporting from R; it also provides two functions
that let users get document content into data objects. A set of functions
lets add and remove images, tables and paragraphs of text in new or existing documents.
When working with 'PowerPoint' presentations, slides can be added or removed; shapes inside
slides can also be added or removed. When working with 'Word' documents, a cursor can be
used to help insert or delete content at a specific location in the document. The package
does not require any installation of Microsoft products to be able to write Microsoft files.
Author: David Gohel [aut, cre],
Frank Hangler [ctb] (function body_replace_all_text),
Liz Sander [ctb] (several documentation fixes),
Jon Calder [ctb] (update vignettes),
John Harrold [ctb] (fuction annotate_base)
Maintainer: David Gohel <david.gohel@ardata.fr>
Diff between officer versions 0.3.1 dated 2018-06-12 and 0.3.2 dated 2018-07-23
DESCRIPTION | 6 +- MD5 | 111 ++++++++++++++++++++-------------------- NAMESPACE | 4 + NEWS | 15 +++++ R/docx_add.R | 60 ++++++++++++--------- R/docx_add_chunk.R | 6 +- R/docx_cursor.R | 5 - R/docx_footnotes.R | 2 R/docx_replace.R | 2 R/docx_section.R | 4 - R/fortify_pptx.R | 3 - R/ppt_class_dir_collection.R | 3 + R/ppt_classes.R | 67 +++++++++++++++--------- R/ppt_ph_add.R | 2 R/ppt_ph_with.R | 7 +- R/ppt_ph_with_at.R | 2 R/read_docx.R | 84 +++++++++++++++++++++++++++++- R/read_pptx.R | 64 ++++++++++++++++++++--- R/read_xlsx.R | 2 build/vignette.rds |binary inst/doc/powerpoint.html | 22 +++---- inst/doc/word.html | 22 +++---- man/annotate_base.Rd | 6 -- man/body_add_blocks.Rd | 2 man/body_add_break.Rd | 2 man/body_add_docx.Rd | 34 +++++++----- man/body_add_fpar.Rd | 4 - man/body_add_gg.Rd | 2 man/body_add_img.Rd | 2 man/body_add_par.Rd | 2 man/body_add_table.Rd | 2 man/body_add_toc.Rd | 2 man/body_end_section.Rd | 2 man/body_remove.Rd | 7 +- man/body_replace_text_at_bkm.Rd | 2 man/change_styles.Rd |only man/cursor.Rd | 5 - man/docx_body_relationship.Rd |only man/docx_body_xml.Rd |only man/media_extract.Rd | 3 - man/move_slide.Rd |only man/on_slide.Rd | 3 - man/ph_add_fpar.Rd | 2 man/ph_with_gg.Rd | 2 man/ph_with_table.Rd | 4 - man/ph_with_ul.Rd | 3 - man/read_docx.Rd | 2 man/read_pptx.Rd | 3 - man/read_xlsx.Rd | 2 man/sections.Rd | 2 man/slip_in_footnote.Rd | 2 man/slip_in_img.Rd | 2 man/slip_in_seqfield.Rd | 2 man/slip_in_text.Rd | 2 src/ppr.cpp | 10 +++ src/rpr.cpp | 2 tests/testthat/test-fp_par.R | 2 tests/testthat/test-pptx-move.R |only tests/testthat/test-zip.R | 1 59 files changed, 410 insertions(+), 206 deletions(-)
More information about TeachingSampling at CRAN
Permanent link
Title: The Self-Updating Process Clustering Algorithms
Description: Implements the self-updating process clustering algorithms proposed
in Shiu and Chen (2016) <doi:10.1080/00949655.2015.1049605>.
Author: Wush Wu [aut, cre],
Shang-Ying Shiu [aut, ctb]
Maintainer: Wush Wu <wush978@gmail.com>
Diff between supc versions 0.1 dated 2017-03-19 and 0.2.0 dated 2018-07-23
supc-0.1/supc/src/Makevars |only supc-0.1/supc/src/cblas_Rdgemm.h |only supc-0.1/supc/src/cluster.cpp |only supc-0.1/supc/src/register.c |only supc-0.2.0/supc/DESCRIPTION | 15 - supc-0.2.0/supc/MD5 | 57 ++- supc-0.2.0/supc/NAMESPACE | 1 supc-0.2.0/supc/R/RcppExports.R | 20 - supc-0.2.0/supc/R/dataset.R |only supc-0.2.0/supc/R/supc1.R | 290 ++++++++++++++++++-- supc-0.2.0/supc/build/vignette.rds |binary supc-0.2.0/supc/cleanup |only supc-0.2.0/supc/configure |only supc-0.2.0/supc/configure.ac |only supc-0.2.0/supc/data/D31.rda |only supc-0.2.0/supc/data/shape.rda |only supc-0.2.0/supc/inst/doc/supc.Rmd | 6 supc-0.2.0/supc/inst/doc/supc.html | 68 ++-- supc-0.2.0/supc/inst/doc/supc_demo.R |only supc-0.2.0/supc/inst/doc/supc_demo.Rmd |only supc-0.2.0/supc/inst/doc/supc_demo.html |only supc-0.2.0/supc/man/D31.Rd |only supc-0.2.0/supc/man/golub.Rd | 5 supc-0.2.0/supc/man/shape.Rd |only supc-0.2.0/supc/man/supc.random.Rd |only supc-0.2.0/supc/man/supc1.Rd | 14 supc-0.2.0/supc/src/Makevars.in |only supc-0.2.0/supc/src/Makevars.win |only supc-0.2.0/supc/src/RcppExports.cpp | 73 ++++- supc-0.2.0/supc/src/cblas_R.h |only supc-0.2.0/supc/src/cblas_Rdaxpy.c |only supc-0.2.0/supc/src/cblas_Rdcopy.c |only supc-0.2.0/supc/src/cblas_Rdgemm.c | 3 supc-0.2.0/supc/src/cblas_Rdnrm2.c |only supc-0.2.0/supc/src/supc1.cpp | 443 ++++++++++++++++++++++++++++++- supc-0.2.0/supc/src/test_dist.cpp |only supc-0.2.0/supc/tests/test-dist.R |only supc-0.2.0/supc/tests/test-golub.R | 28 + supc-0.2.0/supc/tests/test-supc-random.R |only supc-0.2.0/supc/tests/test-supc1.R | 224 ++++++++++----- supc-0.2.0/supc/vignettes/supc.Rmd | 6 supc-0.2.0/supc/vignettes/supc_demo.Rmd |only supc-0.2.0/supc/vignettes/supc_demo.bib |only 43 files changed, 1071 insertions(+), 182 deletions(-)
Title: Stack and Reshape Datasets After Splitting Concatenated Values
Description: Online data collection tools like Google Forms often export
multiple-response questions with data concatenated in cells. The
concat.split (cSplit) family of functions splits such data into separate
cells. The package also includes functions to stack groups of columns and
to reshape wide data, even when the data are "unbalanced"---something
which reshape (from base R) does not handle, and which melt and dcast from
reshape2 do not easily handle.
Author: Ananda Mahto
Maintainer: Ananda Mahto <mrdwab@gmail.com>
Diff between splitstackshape versions 1.4.4 dated 2018-03-29 and 1.4.6 dated 2018-07-23
splitstackshape-1.4.4/splitstackshape/R/cSplit_f.R |only splitstackshape-1.4.4/splitstackshape/man/cSplit_f.Rd |only splitstackshape-1.4.6/splitstackshape/DESCRIPTION | 11 splitstackshape-1.4.6/splitstackshape/MD5 | 71 +- splitstackshape-1.4.6/splitstackshape/NAMESPACE | 1 splitstackshape-1.4.6/splitstackshape/NEWS.md | 178 +++---- splitstackshape-1.4.6/splitstackshape/R/Reshape.R | 19 splitstackshape-1.4.6/splitstackshape/R/Stacked.R | 2 splitstackshape-1.4.6/splitstackshape/R/concat.split.R | 210 ++++---- splitstackshape-1.4.6/splitstackshape/R/expandRows.R | 20 splitstackshape-1.4.6/splitstackshape/R/getanID.R | 14 splitstackshape-1.4.6/splitstackshape/R/splitstackshape-package.R | 43 - splitstackshape-1.4.6/splitstackshape/R/splitstackshape_helper_functions.R | 97 +-- splitstackshape-1.4.6/splitstackshape/R/stratified.R | 253 +++++----- splitstackshape-1.4.6/splitstackshape/README.md | 18 splitstackshape-1.4.6/splitstackshape/data/concatenated.RData |binary splitstackshape-1.4.6/splitstackshape/man/FacsToChars.Rd | 12 splitstackshape-1.4.6/splitstackshape/man/Names.Rd | 2 splitstackshape-1.4.6/splitstackshape/man/NoSep.Rd | 10 splitstackshape-1.4.6/splitstackshape/man/Reshape.Rd | 9 splitstackshape-1.4.6/splitstackshape/man/charMat.Rd | 16 splitstackshape-1.4.6/splitstackshape/man/concat.split.Rd | 74 +- splitstackshape-1.4.6/splitstackshape/man/concat.split.compact.Rd | 5 splitstackshape-1.4.6/splitstackshape/man/concat.split.expanded.Rd | 18 splitstackshape-1.4.6/splitstackshape/man/concat.split.list.Rd | 23 splitstackshape-1.4.6/splitstackshape/man/concat.split.multiple.Rd | 23 splitstackshape-1.4.6/splitstackshape/man/concat.test.Rd | 5 splitstackshape-1.4.6/splitstackshape/man/expandRows.Rd | 8 splitstackshape-1.4.6/splitstackshape/man/getanID.Rd | 12 splitstackshape-1.4.6/splitstackshape/man/numMat.Rd | 16 splitstackshape-1.4.6/splitstackshape/man/othernames.Rd | 7 splitstackshape-1.4.6/splitstackshape/man/read.concat.Rd | 15 splitstackshape-1.4.6/splitstackshape/man/splitstackshape-package.Rd | 31 - splitstackshape-1.4.6/splitstackshape/man/stratified.Rd | 116 ++-- splitstackshape-1.4.6/splitstackshape/tests |only 35 files changed, 672 insertions(+), 667 deletions(-)
More information about splitstackshape at CRAN
Permanent link
Title: Seamless R and C++ Integration
Description: The 'Rcpp' package provides R functions as well as C++ classes which
offer a seamless integration of R and C++. Many R data types and objects can be
mapped back and forth to C++ equivalents which facilitates both writing of new
code as well as easier integration of third-party libraries. Documentation
about 'Rcpp' is provided by several vignettes included in this package, via the
'Rcpp Gallery' site at <http://gallery.rcpp.org>, the paper by Eddelbuettel and
Francois (2011, <doi:10.18637/jss.v040.i08>), the book by Eddelbuettel (2013,
<doi:10.1007/978-1-4614-6868-4>) and the paper by Eddelbuettel and Balamuta (2018,
<doi:10.1080/00031305.2017.1375990>); see 'citation("Rcpp")' for details.
Author: Dirk Eddelbuettel, Romain Francois, JJ Allaire, Kevin Ushey, Qiang Kou,
Nathan Russell, Douglas Bates and John Chambers
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between Rcpp versions 0.12.17 dated 2018-05-18 and 0.12.18 dated 2018-07-23
ChangeLog | 301 ++++++++++++++++++++--- DESCRIPTION | 8 MD5 | 132 +++++----- R/Attributes.R | 8 R/unit.tests.R | 5 build/Rcpp.pdf |binary build/vignette.rds |binary inst/NEWS.Rd | 55 ++++ inst/bib/Rcpp.bib | 36 +- inst/doc/Rcpp-FAQ.pdf |binary inst/doc/Rcpp-attributes.pdf |binary inst/doc/Rcpp-extending.pdf |binary inst/doc/Rcpp-introduction.pdf |binary inst/doc/Rcpp-jss-2011.pdf |binary inst/doc/Rcpp-modules.pdf |binary inst/doc/Rcpp-package.pdf |binary inst/doc/Rcpp-quickref.pdf |binary inst/doc/Rcpp-sugar.pdf |binary inst/doc/Rcpp-unitTests.pdf |binary inst/doc/Rcpp.bib | 36 +- inst/examples/SugarPerformance/sugarBenchmarks.R | 2 inst/include/Rcpp/DataFrame.h | 2 inst/include/Rcpp/Environment.h | 34 -- inst/include/Rcpp/Function.h | 2 inst/include/Rcpp/Language.h | 14 - inst/include/Rcpp/Module.h | 2 inst/include/Rcpp/RNGScope.h | 6 inst/include/Rcpp/Reference.h | 2 inst/include/Rcpp/api/meat/Rcpp_eval.h | 100 ++----- inst/include/Rcpp/config.h | 4 inst/include/Rcpp/exceptions.h | 117 +++++--- inst/include/Rcpp/generated/Function__operator.h | 42 +-- inst/include/Rcpp/macros/macros.h | 62 ---- inst/include/Rcpp/proxy/FieldProxy.h | 6 inst/include/Rcpp/proxy/NamesProxy.h | 2 inst/include/Rcpp/r/headers.h | 4 inst/include/Rcpp/r_cast.h | 16 + inst/include/Rcpp/routines.h | 14 + inst/include/Rcpp/sugar/functions/max.h | 15 - inst/include/Rcpp/sugar/functions/min.h | 14 - inst/include/Rcpp/unwindProtect.h |only inst/include/Rcpp/vector/Vector.h | 4 inst/include/Rcpp/vector/string_proxy.h | 30 +- inst/include/RcppCommon.h | 20 - inst/unitTests/cpp/Exceptions_nocall.cpp |only inst/unitTests/cpp/Vector.cpp | 18 + inst/unitTests/cpp/embeddedR.cpp |only inst/unitTests/cpp/embeddedR2.cpp |only inst/unitTests/cpp/language.cpp | 2 inst/unitTests/cpp/misc.cpp | 4 inst/unitTests/cpp/stack.cpp | 69 ++++- inst/unitTests/cpp/sugar.cpp | 23 + inst/unitTests/runit.Exceptions_nocall.R |only inst/unitTests/runit.Vector.R | 5 inst/unitTests/runit.embeddedR.R |only inst/unitTests/runit.interface.R |only inst/unitTests/runit.stack.R | 132 +++++++--- inst/unitTests/runit.sugar.R | 17 + inst/unitTests/testRcppInterfaceExporter |only inst/unitTests/testRcppInterfaceUser |only src/Date.cpp | 2 src/Rcpp_init.cpp | 2 src/api.cpp | 20 + src/attributes.cpp | 9 src/barrier.cpp | 6 vignettes/Rcpp.bib | 36 +- 66 files changed, 969 insertions(+), 471 deletions(-)
Title: Multi-Model Inference
Description: Tools for performing model selection and model averaging. Automated
model selection through subsetting the maximum model, with optional
constraints for model inclusion. Model parameter and prediction
averaging based on model weights derived from information criteria
(AICc and alike) or custom model weighting schemes.
Author: Kamil Bartoń
Maintainer: Kamil Bartoń <kamil.barton@go2.pl>
Diff between MuMIn versions 1.40.4 dated 2018-01-30 and 1.42.1 dated 2018-07-23
MuMIn-1.40.4/MuMIn/R/r.squaredGLMM.R |only MuMIn-1.40.4/MuMIn/tests/gam-smooth-consitency.R |only MuMIn-1.40.4/MuMIn/tests/unmarked.R |only MuMIn-1.42.1/MuMIn/DESCRIPTION | 26 +-- MuMIn-1.42.1/MuMIn/MD5 | 78 +++++---- MuMIn-1.42.1/MuMIn/NAMESPACE | 55 +++++- MuMIn-1.42.1/MuMIn/NEWS | 46 +++++ MuMIn-1.42.1/MuMIn/R/arm.glm.R | 7 MuMIn-1.42.1/MuMIn/R/class-cplm.R |only MuMIn-1.42.1/MuMIn/R/class-glmmADMB.R |only MuMIn-1.42.1/MuMIn/R/class-glmmTMB.R | 59 ++++++- MuMIn-1.42.1/MuMIn/R/class-unmarkedFit.R | 136 ++++++---------- MuMIn-1.42.1/MuMIn/R/coefTable.R | 1 MuMIn-1.42.1/MuMIn/R/dredge.R | 42 ++--- MuMIn-1.42.1/MuMIn/R/ext.R | 8 MuMIn-1.42.1/MuMIn/R/get.response.R |only MuMIn-1.42.1/MuMIn/R/getAllTerms.R | 6 MuMIn-1.42.1/MuMIn/R/loo.R | 2 MuMIn-1.42.1/MuMIn/R/makeArgs.R | 18 +- MuMIn-1.42.1/MuMIn/R/matchCoef.R |only MuMIn-1.42.1/MuMIn/R/methods-nobs.R | 4 MuMIn-1.42.1/MuMIn/R/model.avg.R | 2 MuMIn-1.42.1/MuMIn/R/model.names.R |only MuMIn-1.42.1/MuMIn/R/model.sel.R | 4 MuMIn-1.42.1/MuMIn/R/pdredge.R | 46 +++-- MuMIn-1.42.1/MuMIn/R/r.squaredGLMM2.R |only MuMIn-1.42.1/MuMIn/R/r.squaredLR.R | 44 +++-- MuMIn-1.42.1/MuMIn/R/umf_specs.R | 179 +++++++++++---------- MuMIn-1.42.1/MuMIn/R/utils-misc.R | 16 + MuMIn-1.42.1/MuMIn/R/utils-models.R | 188 +++++------------------ MuMIn-1.42.1/MuMIn/R/weights-bg.R | 4 MuMIn-1.42.1/MuMIn/R/weights-boot.R | 2 MuMIn-1.42.1/MuMIn/R/weights-cos2.R | 1 MuMIn-1.42.1/MuMIn/R/weights-jackknife.R | 7 MuMIn-1.42.1/MuMIn/data/Beetle.rda |binary MuMIn-1.42.1/MuMIn/data/Cement.rda |binary MuMIn-1.42.1/MuMIn/data/GPA.rda |binary MuMIn-1.42.1/MuMIn/man/dredge.Rd | 10 - MuMIn-1.42.1/MuMIn/man/r.squaredGLMM.Rd | 148 ++++++++++++------ MuMIn-1.42.1/MuMIn/man/r.squaredLR.Rd | 9 - MuMIn-1.42.1/MuMIn/man/subset.model.selection.Rd | 2 MuMIn-1.42.1/MuMIn/man/updateable.Rd | 16 - MuMIn-1.42.1/MuMIn/tests/classes.R | 60 +++---- MuMIn-1.42.1/MuMIn/tests/gam-smooth-match.R |only MuMIn-1.42.1/MuMIn/tests/parallel.R | 18 +- 45 files changed, 679 insertions(+), 565 deletions(-)
Title: Unified Parallel and Distributed Processing in R for Everyone
Description: The purpose of this package is to provide a lightweight and
unified Future API for sequential and parallel processing of R
expression via futures. The simplest way to evaluate an expression
in parallel is to use `x %<-% { expression }` with `plan(multiprocess)`.
This package implements sequential, multicore, multisession, and
cluster futures. With these, R expressions can be evaluated on the
local machine, in parallel a set of local machines, or distributed
on a mix of local and remote machines.
Extensions to this package implement additional backends for
processing futures via compute cluster schedulers etc.
Because of its unified API, there is no need to modify any code in order
switch from sequential on the local machine to, say, distributed
processing on a remote compute cluster.
Another strength of this package is that global variables and functions
are automatically identified and exported as needed, making it
straightforward to tweak existing code to make use of futures.
Author: Henrik Bengtsson [aut, cre, cph]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between future versions 1.8.1 dated 2018-05-03 and 1.9.0 dated 2018-07-23
future-1.8.1/future/R/FutureEvaluationCondition-class.R |only future-1.8.1/future/R/fold.R |only future-1.8.1/future/inst/doc/future-2-issues.html |only future-1.8.1/future/inst/doc/future-2-issues.md.rsp |only future-1.8.1/future/inst/doc/future-4-startup.html |only future-1.8.1/future/inst/doc/future-4-startup.md.rsp |only future-1.8.1/future/man/FutureEvaluationCondition.Rd |only future-1.8.1/future/man/fold.Rd |only future-1.8.1/future/tests/fold.R |only future-1.8.1/future/tests/future_lapply,RNG.R |only future-1.8.1/future/tests/future_lapply,globals.R |only future-1.8.1/future/tests/future_lapply.R |only future-1.8.1/future/vignettes/future-2-issues.md.rsp |only future-1.8.1/future/vignettes/future-4-startup.md.rsp |only future-1.9.0/future/DESCRIPTION | 8 future-1.9.0/future/MD5 | 182 +++--- future-1.9.0/future/NAMESPACE | 13 future-1.9.0/future/NEWS | 52 + future-1.9.0/future/R/ClusterFuture-class.R | 32 - future-1.9.0/future/R/Future-class.R | 138 +++- future-1.9.0/future/R/FutureCondition-class.R | 28 future-1.9.0/future/R/FutureGlobals-class.R | 9 future-1.9.0/future/R/FutureRegistry.R | 7 future-1.9.0/future/R/MulticoreFuture-class.R | 53 + future-1.9.0/future/R/MultisessionFuture-class.R | 25 future-1.9.0/future/R/UniprocessFuture-class.R | 5 future-1.9.0/future/R/as.cluster.R | 3 future-1.9.0/future/R/availableCores.R | 13 future-1.9.0/future/R/cluster.R | 19 future-1.9.0/future/R/future.R | 28 future-1.9.0/future/R/futureCall.R | 1 future-1.9.0/future/R/future_lapply.R | 430 --------------- future-1.9.0/future/R/globals.R | 2 future-1.9.0/future/R/globals_OP.R | 2 future-1.9.0/future/R/makeClusterPSOCK.R | 31 - future-1.9.0/future/R/multicore.R | 18 future-1.9.0/future/R/multiprocess.R | 25 future-1.9.0/future/R/multisession.R | 32 - future-1.9.0/future/R/options.R | 11 future-1.9.0/future/R/remote.R | 2 future-1.9.0/future/R/sequential.R | 8 future-1.9.0/future/R/sessionDetails.R | 4 future-1.9.0/future/R/stdout_OP.R |only future-1.9.0/future/R/utils.R | 102 --- future-1.9.0/future/R/uuid.R | 5 future-1.9.0/future/R/zzz.R | 4 future-1.9.0/future/R/zzz.plan.R | 28 future-1.9.0/future/build/vignette.rds |binary future-1.9.0/future/inst/doc/future-1-overview.html | 116 ++-- future-1.9.0/future/inst/doc/future-1-overview.md.rsp | 118 ++-- future-1.9.0/future/inst/doc/future-2-output.html |only future-1.9.0/future/inst/doc/future-2-output.md.rsp |only future-1.9.0/future/inst/doc/future-3-topologies.html | 57 + future-1.9.0/future/inst/doc/future-3-topologies.md.rsp | 56 + future-1.9.0/future/inst/doc/future-4-issues.html |only future-1.9.0/future/inst/doc/future-4-issues.md.rsp |only future-1.9.0/future/inst/doc/future-5-startup.html |only future-1.9.0/future/inst/doc/future-5-startup.md.rsp |only future-1.9.0/future/man/ClusterFuture-class.Rd | 56 + future-1.9.0/future/man/ConstantFuture-class.Rd | 14 future-1.9.0/future/man/Future-class.Rd | 37 - 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Title: Dataframe Difference Tool
Description: Functions for comparing two data.frames against
each other. The core functionality is to provide a detailed breakdown of any differences
between two data.frames as well as providing utility functions to help narrow down the
source of problems and differences.
Author: Craig Gower [cre, aut],
Kieran Martin [aut]
Maintainer: Craig Gower <craig.gower@roche.com>
Diff between diffdf versions 1.0.0 dated 2018-05-07 and 1.0.1 dated 2018-07-23
DESCRIPTION | 11 +++++++---- MD5 | 8 ++++---- NEWS.md | 13 +++++++++++-- README.md | 44 ++++++++++++++++++++++++++++++-------------- inst/doc/diffdf-basic.html | 4 ++-- 5 files changed, 54 insertions(+), 26 deletions(-)
Title: Copula-Based Estimation and Statistical Process Control for
Serially Correlated Time Series
Description: Estimation and statistical process control are performed under
copula-based time-series models.
Available are statistical methods in Long and Emura (2014 JCSA),
Emura et al. (2017 Commun Stat-Simul) <DOI:10.1080/03610918.2015.1073303>,
and Chen and Emura (2018-, submitted).
Author: Takeshi Emura, Weiru Chen and Ting-Hsuan Long
Maintainer: Takeshi Emura <takeshiemura@gmail.com>
Diff between Copula.Markov versions 1.1 dated 2016-07-30 and 2.1 dated 2018-07-23
DESCRIPTION | 20 ++++++++++++-------- MD5 | 18 +++++++++++------- NAMESPACE | 2 +- R/Clayton.Markov.DATA.binom.R |only R/Clayton.Markov.MLE.binom.R |only man/Clayton.Markov.DATA.Rd | 5 +++-- man/Clayton.Markov.DATA.binom.Rd |only man/Clayton.Markov.MLE.Rd | 5 +++-- man/Clayton.Markov.MLE.binom.Rd |only man/Copula.Markov-package.Rd | 25 ++++++++++++++++--------- man/Joe.Markov.DATA.Rd | 5 +++-- man/Joe.Markov.MLE.Rd | 5 +++-- 12 files changed, 52 insertions(+), 33 deletions(-)
Title: Functions and Datasets for the Book by Keon-Woong Moon
Description: Several analysis-related functions for the book entitled "R
statistics and graph for medical articles" (written in Korean), version 1,
by Keon-Woong Moon with Korean demographic data with several plot
functions.
Author: Keon-Woong Moon [aut, cre]
Maintainer: Keon-Woong Moon <cardiomoon@gmail.com>
Diff between moonBook versions 0.1.8 dated 2018-04-25 and 0.2.3 dated 2018-07-23
moonBook-0.1.8/moonBook/man/mytable.sub.Rd |only moonBook-0.2.3/moonBook/DESCRIPTION | 10 moonBook-0.2.3/moonBook/MD5 | 49 moonBook-0.2.3/moonBook/NAMESPACE | 42 moonBook-0.2.3/moonBook/NEWS | 39 moonBook-0.2.3/moonBook/R/addComma.R |only moonBook-0.2.3/moonBook/R/addLabelDf.R |only moonBook-0.2.3/moonBook/R/compressMytable.R |only moonBook-0.2.3/moonBook/R/mytable.R | 379 ++++ moonBook-0.2.3/moonBook/R/mytable.df.R |only moonBook-0.2.3/moonBook/build/vignette.rds |binary moonBook-0.2.3/moonBook/inst/doc/moonBook.R | 34 moonBook-0.2.3/moonBook/inst/doc/moonBook.Rmd | 59 moonBook-0.2.3/moonBook/inst/doc/moonBook.html | 1375 ++++++++++++++++-- moonBook-0.2.3/moonBook/inst/doc/moonBook_update.R |only moonBook-0.2.3/moonBook/inst/doc/moonBook_update.Rmd |only moonBook-0.2.3/moonBook/inst/doc/moonBook_update.html |only moonBook-0.2.3/moonBook/man/addComma.Rd |only moonBook-0.2.3/moonBook/man/addLabelDf.Rd |only moonBook-0.2.3/moonBook/man/cat.test.Rd |only moonBook-0.2.3/moonBook/man/changeColnameLabel.Rd |only moonBook-0.2.3/moonBook/man/comma.Rd |only moonBook-0.2.3/moonBook/man/compress.Rd |only moonBook-0.2.3/moonBook/man/deleteRows.Rd |only moonBook-0.2.3/moonBook/man/extractKind.Rd |only moonBook-0.2.3/moonBook/man/getLabel.Rd |only moonBook-0.2.3/moonBook/man/getMapping.Rd |only moonBook-0.2.3/moonBook/man/my.chisq.test.Rd | 15 moonBook-0.2.3/moonBook/man/mytable.Rd | 63 moonBook-0.2.3/moonBook/man/mytable2.Rd | 24 moonBook-0.2.3/moonBook/man/mytable_df.Rd |only moonBook-0.2.3/moonBook/man/mytable_sub.Rd |only moonBook-0.2.3/moonBook/man/mytable_sub2.Rd |only moonBook-0.2.3/moonBook/man/print.mytable.df.Rd |only moonBook-0.2.3/moonBook/vignettes/moonBook.Rmd | 59 moonBook-0.2.3/moonBook/vignettes/moonBook_update.Rmd |only moonBook-0.2.3/moonBook/vignettes/rsconnect |only 37 files changed, 1928 insertions(+), 220 deletions(-)
Title: Visualization and Analysis of Statistical Measures of Confidence
Description: Enables: (1) plotting two-dimensional confidence regions, and (2) calculating
confidence intervals and the associated actual coverage for binomial proportions. Both
are given in greater detail next. (1) Plots the two-dimensional confidence region for
probability distribution parameters (supported distribution suffixes: gamma, invgauss,
llogis, lnorm, norm, unif, weibull) corresponding to a user given dataset and level of
significance. The crplot() algorithm plots more points in areas of greater curvature to
ensure a smooth appearance throughout the confidence region boundary. An alternative
heuristic plots a specified number of points at roughly uniform intervals along its
boundary. Both heuristics build upon the radial profile log-likelihood ratio technique
for plotting two-dimensional confidence regions given by Jaeger (2016)
<doi:10.1080/00031305.2016.1182946>. (2) Calculates confidence interval bounds for a
binomial proportion with binomTest(), calculates the actual coverage with
binomTestCoverage(), and plots the actual coverage with binomTestCoveragePlot(). Calculates
confidence interval bounds for the binomial proportion using an ensemble of constituent
confidence intervals with binomTestEnsemble().
Author: Christopher Weld [aut, cre] (<https://orcid.org/0000-0001-5902-9738>),
Hayeon Park [aut],
Lawrence Leemis [aut],
Andrew Loh [ctb],
Yuan Chang [ctb],
Brock Crook [ctb],
Xin Zhang [ctb]
Maintainer: Christopher Weld <ceweld@email.wm.edu>
Diff between conf versions 1.3 dated 2018-07-16 and 1.3.1 dated 2018-07-23
DESCRIPTION | 6 +++--- MD5 | 16 ++++++++-------- R/coversim.R | 4 ++-- R/crplot.R | 17 ++++++++++++----- inst/doc/crplot.R | 2 +- inst/doc/crplot.Rmd | 2 +- inst/doc/crplot.html | 8 ++++---- man/crplot.Rd | 4 ++-- vignettes/crplot.Rmd | 2 +- 9 files changed, 34 insertions(+), 27 deletions(-)
Title: Analysis of Data with Mixed Measurement Error and
Misclassification in Covariates
Description: Implementation of the augmented
Simulation-Extrapolation (SIMEX) algorithm proposed by Yi et al. (2015) <doi:10.1080/01621459.2014.922777>
for analyzing the data with mixed measurement error and misclassification. The main
function provides a similar summary output as that of glm() function. Both parametric and
empirical SIMEX are considered in the package.
Author: Qihuang Zhang <qihuang.zhang@uwaterloo.ca>, Grace Y. Yi <yyi@uwaterloo.ca>
Maintainer: Qihuang Zhang <qihuang.zhang@uwaterloo.ca>
Diff between augSIMEX versions 2.1 dated 2018-07-11 and 2.2 dated 2018-07-23
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/plotaugSIMEX.R | 8 ++++---- man/plotaugSIMEX.Rd | 2 +- 4 files changed, 12 insertions(+), 12 deletions(-)