Title: Read-Write Support for 'NumPy' Files via 'Rcpp'
Description: The 'cnpy' library written by Carl Rogers provides read and write
facilities for files created with (or for) the 'NumPy' extension for 'Python'.
Vectors and matrices of numeric types can be read or written to and from
files as well as compressed files. Support for integer files is available if
the package has been built with -std=c++11 which should be the default on
all platforms since the release of R 3.3.0.
Author: Dirk Eddelbuettel and Wush Wu
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppCNPy versions 0.2.9 dated 2018-03-22 and 0.2.10 dated 2018-07-29
RcppCNPy-0.2.10/RcppCNPy/ChangeLog | 18 + RcppCNPy-0.2.10/RcppCNPy/DESCRIPTION | 10 RcppCNPy-0.2.10/RcppCNPy/MD5 | 29 - RcppCNPy-0.2.10/RcppCNPy/README.md | 7 RcppCNPy-0.2.10/RcppCNPy/build/vignette.rds |binary RcppCNPy-0.2.10/RcppCNPy/inst/NEWS.Rd | 13 RcppCNPy-0.2.10/RcppCNPy/inst/doc/RcppCNPy-intro.R | 3 RcppCNPy-0.2.10/RcppCNPy/inst/doc/RcppCNPy-intro.Rmd | 74 ---- RcppCNPy-0.2.10/RcppCNPy/inst/doc/RcppCNPy-intro.pdf |binary RcppCNPy-0.2.10/RcppCNPy/inst/doc/UsingReticulate.R | 159 +++++----- RcppCNPy-0.2.10/RcppCNPy/inst/doc/UsingReticulate.Rmd | 256 ++++------------- RcppCNPy-0.2.10/RcppCNPy/inst/doc/UsingReticulate.pdf |binary RcppCNPy-0.2.10/RcppCNPy/src/RcppExports.cpp |only RcppCNPy-0.2.10/RcppCNPy/vignettes/RcppCNPy-intro.Rmd | 74 ---- RcppCNPy-0.2.10/RcppCNPy/vignettes/RcppCNPy.bib |only RcppCNPy-0.2.10/RcppCNPy/vignettes/UsingReticulate.Rmd | 256 ++++------------- RcppCNPy-0.2.9/RcppCNPy/src/init.c |only 17 files changed, 310 insertions(+), 589 deletions(-)
Title: Bayesian Dose-Finding Designs using Pharmacokinetics (PK) for
Phase I Clinical Trials
Description: Statistical methods involving PK measures are provided, in the dose allocation process during a Phase I clinical trials. These methods, proposed by Ursino et al, (2017) <doi:10.1002/bimj.201600084>, enter pharmacokinetics (PK) in the dose finding designs in different ways, including covariates models, dependent variable or hierarchical models. This package provides functions to generate data from several scenarios and functions to run simulations which their objective is to determine the maximum tolerated dose (MTD).
Author: Artemis Toumazi [cre, aut],
Sarah Zohar [aut],
Moreno Ursino [aut],
Trustees of Columbia University [cph] (R/stanmodels.R),
French National Institute of Health and Medical Research [cph]
Maintainer: Artemis Toumazi <artemis.toumazi@gmail.com>
Diff between dfpk versions 3.4.1 dated 2018-03-28 and 3.5.0 dated 2018-07-29
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- R/pklogit.R | 4 ++-- 3 files changed, 8 insertions(+), 8 deletions(-)
Title: Spatial Individual-Plant Modelling
Description: A platform for experimenting with spatially explicit individual-based vegetation models.
Author: Oscar Garcia
Maintainer: Oscar Garcia <garcia@dasometrics.net>
Diff between siplab versions 1.2 dated 2016-03-16 and 1.3 dated 2018-07-29
DESCRIPTION | 8 ++++---- MD5 | 15 ++++++++------- R/staebler.ker.R | 6 +++--- inst/NEWS |only man/boreas.Rd | 4 ++-- man/edges.Rd | 2 +- man/kernel.Rd | 13 +++++++++---- man/pairwise.Rd | 2 +- man/siplab-package.Rd | 12 ++++++------ 9 files changed, 34 insertions(+), 28 deletions(-)
Title: Text Mining Package
Description: A framework for text mining applications within R.
Author: Ingo Feinerer [aut, cre] (<https://orcid.org/0000-0001-7656-8338>),
Kurt Hornik [aut] (<https://orcid.org/0000-0003-4198-9911>),
Artifex Software, Inc. [ctb, cph] (pdf_info.ps taken from GPL
Ghostscript)
Maintainer: Ingo Feinerer <feinerer@logic.at>
Diff between tm versions 0.7-4 dated 2018-06-19 and 0.7-5 dated 2018-07-29
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- build/vignette.rds |binary data/acq.rda |binary data/crude.rda |binary inst/NEWS.Rd | 11 +++++++++-- inst/doc/extensions.pdf |binary inst/doc/tm.pdf |binary src/tokenizer.cpp | 13 ++++++++++++- 9 files changed, 33 insertions(+), 15 deletions(-)
Title: Advanced Tensor Arithmetic with Named Indices
Description: Provides convenience functions for advanced
linear algebra with tensors and computation with datasets of
tensors on a higher level abstraction. It includes Einstein and
Riemann summing conventions, dragging, co- and contravariate
indices, parallel computations on sequences of tensors.
Author: K. Gerald van den Boogaart <boogaart@uni-greifswald.de>
Maintainer: K. Gerald van den Boogaart <boogaart@math.tu-freiberg.de>
Diff between tensorA versions 0.36 dated 2010-12-01 and 0.36.1 dated 2018-07-29
DESCRIPTION | 12 +++++++----- MD5 |only NAMESPACE | 16 ++++++++++++++++ 3 files changed, 23 insertions(+), 5 deletions(-)
Title: Collection of Utility and Convenience Functions
Description: A collection of various utility and convenience functions.
Author: Ari B. Friedman
Maintainer: Ari B. Friedman <abfriedman@gmail.com>
Diff between taRifx versions 1.0.6 dated 2014-05-29 and 1.0.6.1 dated 2018-07-29
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- NAMESPACE | 6 ++++++ 3 files changed, 12 insertions(+), 6 deletions(-)
Title: 'rquery' for 'data.table'
Description: Implements the 'rquery' piped Codd-style query algebra using 'data.table'. This allows
for a high-speed in memory implementation of Codd-style data manipulation tools.
Author: John Mount [aut, cre],
Win-Vector LLC [cph]
Maintainer: John Mount <jmount@win-vector.com>
Diff between rqdatatable versions 0.1.2 dated 2018-07-09 and 0.1.3 dated 2018-07-29
DESCRIPTION | 10 +-- MD5 | 32 +++++---- NEWS.md | 6 + R/execute_parallel.R | 4 - R/relop_extend.R | 2 R/relop_natural_join.R | 1 R/relop_non_sql.R | 4 - R/relop_theta_join.R | 108 +++++++++++++++------------------ R/rquery_fns.R | 2 inst/doc/GroupedSampling.html | 4 - inst/doc/logisticexample.html | 6 - man/ex_data_table.Rd | 2 man/ex_data_table.relop_non_sql.Rd | 4 - man/ex_data_table.relop_theta_join.Rd | 31 ++------- man/ex_data_table_parallel.Rd | 4 - tests/testthat/test_ex_pipe.R |only tests/testthat/test_execute_parallel.R | 65 +++++++++++++++++++ tests/testthat/test_select_narrowing.R |only 18 files changed, 165 insertions(+), 120 deletions(-)
Title: Helper Functions for Regression Analysis
Description: A set of functions used to automate commonly used methods in
regression analysis. This includes plotting interactions, calculating simple
slopes, calculating standardized coefficients, etc. See the reghelper
documentation for more information, documentation, and examples.
Author: Jeffrey Hughes [aut, cre]
Maintainer: Jeffrey Hughes <jeff.hughes@gmail.com>
Diff between reghelper versions 0.3.3 dated 2017-04-07 and 0.3.4 dated 2018-07-29
reghelper-0.3.3/reghelper/man/ICC.lme.Rd |only reghelper-0.3.3/reghelper/man/ICC.merMod.Rd |only reghelper-0.3.3/reghelper/man/beta.glm.Rd |only reghelper-0.3.3/reghelper/man/beta.lm.Rd |only reghelper-0.3.3/reghelper/man/beta.lme.Rd |only reghelper-0.3.3/reghelper/man/beta.merMod.Rd |only reghelper-0.3.3/reghelper/man/cell_means.glm.Rd |only reghelper-0.3.3/reghelper/man/cell_means.lm.Rd |only reghelper-0.3.3/reghelper/man/cell_means_q.glm.Rd |only reghelper-0.3.3/reghelper/man/cell_means_q.lm.Rd |only reghelper-0.3.3/reghelper/man/coef.block_aov.Rd |only reghelper-0.3.3/reghelper/man/coef.block_glm.Rd |only reghelper-0.3.3/reghelper/man/coef.block_glm_summary.Rd |only reghelper-0.3.3/reghelper/man/coef.block_lm.Rd |only reghelper-0.3.3/reghelper/man/coef.block_lm_summary.Rd |only reghelper-0.3.3/reghelper/man/fitted.block_aov.Rd |only reghelper-0.3.3/reghelper/man/fitted.block_glm.Rd |only reghelper-0.3.3/reghelper/man/fitted.block_lm.Rd |only reghelper-0.3.3/reghelper/man/graph_model.glm.Rd |only reghelper-0.3.3/reghelper/man/graph_model.lm.Rd |only reghelper-0.3.3/reghelper/man/graph_model.lme.Rd |only reghelper-0.3.3/reghelper/man/graph_model.merMod.Rd |only reghelper-0.3.3/reghelper/man/graph_model_q.glm.Rd |only reghelper-0.3.3/reghelper/man/graph_model_q.lm.Rd |only reghelper-0.3.3/reghelper/man/graph_model_q.lme.Rd |only reghelper-0.3.3/reghelper/man/graph_model_q.merMod.Rd |only reghelper-0.3.3/reghelper/man/print.block_aov_summary.Rd |only reghelper-0.3.3/reghelper/man/print.block_glm_summary.Rd |only reghelper-0.3.3/reghelper/man/print.block_lm_summary.Rd |only reghelper-0.3.3/reghelper/man/residuals.block_aov.Rd |only reghelper-0.3.3/reghelper/man/residuals.block_glm.Rd |only reghelper-0.3.3/reghelper/man/residuals.block_glm_summary.Rd |only reghelper-0.3.3/reghelper/man/residuals.block_lm.Rd |only reghelper-0.3.3/reghelper/man/residuals.block_lm_summary.Rd |only reghelper-0.3.3/reghelper/man/sig_regions.lm.Rd |only reghelper-0.3.3/reghelper/man/simple_slopes.glm.Rd |only reghelper-0.3.3/reghelper/man/simple_slopes.lm.Rd |only reghelper-0.3.3/reghelper/man/simple_slopes.lme.Rd |only reghelper-0.3.3/reghelper/man/simple_slopes.merMod.Rd |only reghelper-0.3.3/reghelper/man/summary.block_aov.Rd |only reghelper-0.3.3/reghelper/man/summary.block_glm.Rd |only reghelper-0.3.3/reghelper/man/summary.block_lm.Rd |only reghelper-0.3.4/reghelper/DESCRIPTION | 10 reghelper-0.3.4/reghelper/MD5 | 95 -- reghelper-0.3.4/reghelper/NAMESPACE | 7 reghelper-0.3.4/reghelper/NEWS.md | 9 reghelper-0.3.4/reghelper/R/ICC.R | 64 - reghelper-0.3.4/reghelper/R/beta.R | 170 --- reghelper-0.3.4/reghelper/R/build_model.R | 516 ----------- reghelper-0.3.4/reghelper/R/build_model_doc.R |only reghelper-0.3.4/reghelper/R/cell_means.R | 195 +--- reghelper-0.3.4/reghelper/R/graph_model.R | 515 +--------- reghelper-0.3.4/reghelper/R/sig_regions.R | 53 - reghelper-0.3.4/reghelper/R/simple_slopes.R | 239 +---- reghelper-0.3.4/reghelper/README.md | 12 reghelper-0.3.4/reghelper/man/ICC.Rd | 42 reghelper-0.3.4/reghelper/man/beta.Rd | 89 + reghelper-0.3.4/reghelper/man/block_model_summ.Rd |only reghelper-0.3.4/reghelper/man/build_model.Rd | 21 reghelper-0.3.4/reghelper/man/build_model_q.Rd | 26 reghelper-0.3.4/reghelper/man/cell_means.Rd | 62 + reghelper-0.3.4/reghelper/man/cell_means_q.Rd |only reghelper-0.3.4/reghelper/man/graph_model.Rd | 126 ++ reghelper-0.3.4/reghelper/man/graph_model_q.Rd | 126 ++ reghelper-0.3.4/reghelper/man/print.simple_slopes.Rd | 1 reghelper-0.3.4/reghelper/man/print.simple_slopes_lme4.Rd | 1 reghelper-0.3.4/reghelper/man/reghelper.Rd | 1 reghelper-0.3.4/reghelper/man/sig_regions.Rd | 54 - reghelper-0.3.4/reghelper/man/simple_slopes.Rd | 106 +- reghelper-0.3.4/reghelper/tests/testthat/test_beta.R | 2 reghelper-0.3.4/reghelper/tests/testthat/test_graph_model.R | 36 71 files changed, 941 insertions(+), 1637 deletions(-)
Title: Analysis of Geostatistical Data
Description: Geostatistical analysis including traditional, likelihood-based and Bayesian methods.
Author: Paulo J. Ribeiro Jr <paulojus@ufpr.br> and
Peter J. Diggle <p.diggle@lancaster.ac.uk>
Maintainer: Paulo J. Ribeiro Jr <paulojus@ufpr.br>
Diff between geoR versions 1.7-5.2 dated 2016-05-03 and 1.7-5.2.1 dated 2018-07-29
DESCRIPTION | 6 +++--- MD5 | 48 ++++++++++++++++++++++++------------------------ NAMESPACE | 4 ++++ R/variofit.R | 2 +- data/Ksat.rda |binary data/SIC.rda |binary data/ca20.rda |binary data/camg.rda |binary data/elevation.rda |binary data/gambia.rda |binary data/head.rda |binary data/hoef.rda |binary data/isaaks.rda |binary data/kattegat.rda |binary data/landim1.rda |binary data/parana.rda |binary data/s100.rda |binary data/s121.rda |binary data/s256i.rda |binary data/soil250.rda |binary data/soja98.rda |binary data/tce.rda |binary data/wo.rda |binary data/wolfcamp.rda |binary data/wrc.rda |binary 25 files changed, 32 insertions(+), 28 deletions(-)
Title: R Interface to 'tslib' (a Time Series Library in C++)
Description: Fast operations for time series objects.
Author: Whit Armstrong <armstrong.whit@gmail.com>
Maintainer: Whit Armstrong <armstrong.whit@gmail.com>
Diff between fts versions 0.9.9 dated 2014-04-04 and 0.9.9.1 dated 2018-07-29
DESCRIPTION | 10 +++++----- MD5 | 4 ++-- NAMESPACE | 16 +++++++++++++++- 3 files changed, 22 insertions(+), 8 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-04-11 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-08-15 1.3
2016-08-10 1.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-06-13 0.1.2
2017-06-05 0.1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-05-31 1.2
2014-07-30 1.1
2014-07-15 1.0
Title: Raw Accelerometer Data Analysis
Description: A tool to process and analyse data collected with wearable raw acceleration sensors as described in van Hees and colleagues (2014) <doi: 10.1152/japplphysiol.00421.2014> and (2015) <doi: 10.1371/journal.pone.0142533>. The package has been developed and tested for binary data from 'GENEActiv' <https://www.activinsights.com/> and GENEA devices (not for sale), .csv-export data from 'Actigraph' <http://actigraphcorp.com> devices, and .cwa and .wav-format data from 'Axivity' <https://axivity.com/product/ax3>. These devices are currently widely used in research on human daily physical activity.
Author: Vincent T van Hees [aut, cre],
Zhou Fang [ctb],
Jing Hua Zhao [ctb],
Joe Heywood [ctb],
Evgeny Mirkes [ctb],
Severine Sabia [ctb],
Jairo H Migueles [ctb]
Maintainer: Vincent T van Hees <vincentvanhees@gmail.com>
Diff between GGIR versions 1.5-24 dated 2018-07-09 and 1.6-0 dated 2018-07-29
DESCRIPTION | 9 - MD5 | 58 +++--- NAMESPACE | 2 R/g.analyse.R | 211 +++++++++++++++---------- R/g.getmeta.R | 2 R/g.part2.R | 3 R/g.part4.R | 6 R/g.part5.R | 83 +++++---- R/g.plot5.R | 57 +++--- R/g.readaccfile.R | 25 ++ R/g.report.part4.R | 46 ++--- R/g.report.part5.R | 10 - R/g.shell.GGIR.R | 4 R/g.sib.det.R | 4 README.md | 4 inst/NEWS.Rd | 37 ++++ man/GGIR-package.Rd | 4 man/g.analyse.Rd | 59 +++--- man/g.part2.Rd | 3 man/g.part4.Rd | 4 tests/testthat.R | 1 tests/testthat/test_POSIX.R | 1 tests/testthat/test_chainof5parts.R | 51 ++++-- tests/testthat/test_create_test_acc_csv.R | 1 tests/testthat/test_create_test_sleeplog_csv.R | 1 tests/testthat/test_g.impute.R | 1 tests/testthat/test_getfolderstructure.R | 1 tests/testthat/test_ggetbout.R | 1 tests/testthat/test_identify_levels.R | 1 tests/testthat/test_is_this_a_dst_night.R | 1 30 files changed, 418 insertions(+), 273 deletions(-)
Title: Mining Frequent Sequences
Description: Add-on for arules to handle and mine frequent sequences.
Provides interfaces to the C++ implementation of cSPADE by
Mohammed J. Zaki.
Author: Christian Buchta and Michael Hahsler, with contributions from
Daniel Diaz
Maintainer: Christian Buchta <christian.buchta@wu.ac.at>
Diff between arulesSequences versions 0.2-19 dated 2017-05-11 and 0.2-20 dated 2018-07-29
CHANGELOG | 7 +++++++ DESCRIPTION | 6 +++--- MD5 | 10 +++++----- src/TPOSE/exttpose.cc | 8 ++++---- src/idlists.c | 2 +- src/ptree.c | 7 ++++--- 6 files changed, 24 insertions(+), 16 deletions(-)
More information about arulesSequences at CRAN
Permanent link
Title: Hyphenation and Syllable Counting for Text Analysis
Description: Provides the hyphenation algorithm used for 'TeX'/'LaTeX'
and similar software, as proposed by Liang (1983,
<https://tug.org/docs/liang/>). Mainly contains the function
hyphen() to be used for hyphenation/syllable counting of text
objects. It was originally developed for and part of the
'koRpus' package, but later released as a separate package so
it's lighter to have this particular functionality available
for other packages. Support for various languages needs be
added on-the-fly or by plugin packages
(<https://undocumeantit.github.io/repos>); this package does
not include any language specific data. Due to some
restrictions on CRAN, the full package sources are only
available from the project homepage. To ask for help, report
bugs, request features, or discuss the development of the
package, please subscribe to the koRpus-dev mailing list
(<http://korpusml.reaktanz.de>).
Author: Meik Michalke [aut, cre]
Maintainer: Meik Michalke <meik.michalke@hhu.de>
Diff between sylly versions 0.1-4 dated 2018-01-06 and 0.1-5 dated 2018-07-29
sylly-0.1-4/sylly/inst/doc/sylly_vignette.Rnw |only sylly-0.1-4/sylly/inst/doc/sylly_vignette.pdf |only sylly-0.1-4/sylly/vignettes/sylly_vignette.Rnw |only sylly-0.1-5/sylly/ChangeLog | 29 ++++-- sylly-0.1-5/sylly/DESCRIPTION | 43 +++++--- sylly-0.1-5/sylly/MD5 | 77 ++++++++-------- sylly-0.1-5/sylly/NAMESPACE | 7 + sylly-0.1-5/sylly/R/00_environment.R | 23 ++++ sylly-0.1-5/sylly/R/01_class_01_kRp.hyph.pat.R | 21 ++-- sylly-0.1-5/sylly/R/01_class_02_kRp.hyphen.R | 15 ++- sylly-0.1-5/sylly/R/02_method_correct.R | 4 sylly-0.1-5/sylly/R/02_method_hyphen.R | 15 ++- sylly-0.1-5/sylly/R/02_method_show.kRp.hyphen.R | 4 sylly-0.1-5/sylly/R/02_method_summary.kRp.hyphen.R | 4 sylly-0.1-5/sylly/R/available.sylly.lang.R |only sylly-0.1-5/sylly/R/get.sylly.env.R | 20 ++-- sylly-0.1-5/sylly/R/install.sylly.lang.R |only sylly-0.1-5/sylly/R/manage.hyph.pat.R | 6 - sylly-0.1-5/sylly/R/read.hyph.pat.R | 6 - sylly-0.1-5/sylly/R/set.sylly.env.R | 57 ++++++++--- sylly-0.1-5/sylly/R/sylly-internal.R | 59 +++++++++++- sylly-0.1-5/sylly/R/sylly-internal_langpack_generator.R | 33 ++---- sylly-0.1-5/sylly/R/sylly-package.R | 30 ++---- sylly-0.1-5/sylly/README.md | 4 sylly-0.1-5/sylly/build |only sylly-0.1-5/sylly/inst/CITATION | 4 sylly-0.1-5/sylly/inst/NEWS.Rd | 46 ++++++++- sylly-0.1-5/sylly/inst/doc/sylly_vignette.R | 37 +++++++ sylly-0.1-5/sylly/inst/doc/sylly_vignette.Rmd |only sylly-0.1-5/sylly/inst/doc/sylly_vignette.html |only sylly-0.1-5/sylly/man/available.sylly.lang.Rd |only sylly-0.1-5/sylly/man/correct-methods.Rd | 4 sylly-0.1-5/sylly/man/get.sylly.env.Rd | 6 + sylly-0.1-5/sylly/man/hyphen-methods.Rd | 16 ++- sylly-0.1-5/sylly/man/install.sylly.lang.Rd |only sylly-0.1-5/sylly/man/kRp.hyph.pat-class.Rd | 10 ++ sylly-0.1-5/sylly/man/kRp.hyphen-class.Rd | 10 ++ sylly-0.1-5/sylly/man/manage.hyph.pat.Rd | 4 sylly-0.1-5/sylly/man/read.hyph.pat.Rd | 2 sylly-0.1-5/sylly/man/set.sylly.env.Rd | 27 ++++- sylly-0.1-5/sylly/man/show-methods.Rd | 4 sylly-0.1-5/sylly/man/summary-methods.Rd | 4 sylly-0.1-5/sylly/man/sylly-package.Rd | 34 +++---- sylly-0.1-5/sylly/vignettes/apa.csl |only sylly-0.1-5/sylly/vignettes/sylly_vignette.Rmd |only 45 files changed, 462 insertions(+), 203 deletions(-)
Title: Parametric Mortality Models, Life Tables and HMD
Description: Fit the most popular human mortality 'laws', and construct
full and abridge life tables given various input indices. A mortality
law is a parametric function that describes the dying-out process of
individuals in a population during a significant portion of their
life spans. For a comprehensive review of the most important mortality
laws see Tabeau (2001) <doi:10.1007/0-306-47562-6_1>.
An elegant function for downloading data from Human Mortality
Database <https://www.mortality.org> is provided as well.
Author: Marius D. Pascariu [aut, cre],
Vladimir Canudas-Romo [ctb]
Maintainer: Marius D. Pascariu <mpascariu@outlook.com>
Diff between MortalityLaws versions 1.4.0 dated 2018-06-20 and 1.5.0 dated 2018-07-29
DESCRIPTION | 9 - MD5 | 66 ++++----- NAMESPACE | 1 NEWS | 4 R/LawTable.R |only R/LifeTable.R | 41 +++-- R/MortalityLaw_check.R | 6 R/MortalityLaw_main.R | 41 +++-- R/availableLF.R | 6 R/availableLaws.R | 11 - R/data_and_imports.R | 10 - R/graphics.R | 18 +- R/readHMD.R | 8 - THANKS | 1 inst/doc/Installation.pdf |binary inst/doc/Manual.R | 3 inst/doc/Manual.Rmd | 54 +++---- inst/doc/Manual.pdf |binary man/LawTable.Rd |only man/LifeTable.Rd | 26 ++- man/LifeTable.core.Rd | 8 - man/MortalityLaw.Rd | 45 +++--- man/ReadHMD.Rd | 6 man/ReadHMD.core.Rd | 2 man/ahmd.Rd | 4 man/availableHMD.Rd | 2 man/availableLF.Rd | 6 man/availableLaws.Rd | 11 - man/bring_parameters.Rd | 2 man/coale.demeny.ax.Rd | 2 man/find.my.case.Rd | 6 man/objective_fun.Rd | 7 man/print.LifeTable.Rd | 4 vignettes/Manual.Rmd | 54 +++---- vignettes/Mlaw_Refrences.bib | 304 +++++++++++++++++++++++-------------------- 35 files changed, 421 insertions(+), 347 deletions(-)
Title: Identification of Cell Types and Inference of Lineage Trees from
Single-Cell RNA-Seq Data
Description: Application of 'RaceID' allows inference of cell types and prediction of lineage trees by he StemID2 algorithm. Herman, J.S., Sagar, Grün D. (2018) <DOI:10.1038/nmeth.4662>.
Author: Dominic Grün <dominic.gruen@gmail.com>
Maintainer: Dominic Grün <dominic.gruen@gmail.com>
Diff between RaceID versions 0.0.9 dated 2018-07-27 and 0.1.0 dated 2018-07-29
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- inst/doc/RaceID.R | 8 ++++---- inst/doc/RaceID.Rmd | 14 ++++++++------ inst/doc/RaceID.html | 22 ++++++++++++---------- vignettes/RaceID.Rmd | 14 ++++++++------ 6 files changed, 41 insertions(+), 35 deletions(-)
Title: Feature Selection (Including Multiple Solutions) and Bayesian
Networks
Description: Many feature selection methods for a wide range of response variables, including minimal, statistically-equivalent and equally-predictive feature subsets. Bayesian network algorithms and related functions are also included. The package name 'MXM' stands for "Mens eX Machina", meaning "Mind from the Machine" in Latin. Reference: Feature Selection with the R Package MXM: Discovering Statistically Equivalent Feature Subsets, Lagani, V. and Athineou, G. and Farcomeni, A. and Tsagris, M. and Tsamardinos, I. (2017). Journal of Statistical Software, 80(7). <doi:10.18637/jss.v080.i07>.
Author: Michail Tsagris [aut, cre],
Ioannis Tsamardinos [aut, cph],
Vincenzo Lagani [aut, cph],
Giorgos Athineou [aut],
Giorgos Borboudakis [ctb],
Anna Roumpelaki [ctb]
Maintainer: Michail Tsagris <mtsagris@csd.uoc.gr>
Diff between MXM versions 1.3.7 dated 2018-07-26 and 1.3.8 dated 2018-07-29
DESCRIPTION | 8 +++--- MD5 | 48 +++++++++++++++++++-------------------- NAMESPACE | 2 + R/MMPC.R | 2 - R/MMPC.timeclass.R | 8 +++--- R/SES.R | 4 +-- R/SES.timeclass.R | 2 - R/mmpc.gee2.R | 2 - R/mmpc.glmm2.R | 7 ++++- R/mmpc2.R | 14 ++++++++--- R/mmpcbackphase.R | 2 - R/perm.mmpc.R | 2 - R/perm.ses.R | 4 +-- R/testIndClogit.R | 2 - R/univregs.R | 14 ++++------- R/wald.mmpc.R | 8 +++--- R/wald.ses.R | 4 +-- inst/doc/FBED_KVerrou_2_5.html | 20 ++++++++-------- inst/doc/FS_guide.pdf |binary inst/doc/SES_KMVerrou_11_12.html | 35 ++++++++++++++-------------- inst/doc/article.pdf |binary inst/doc/guide.pdf |binary inst/doc/mxm_mmpc_tutorial.html | 20 ++++++++-------- man/MXM-package.Rd | 4 +-- man/mmpcbackphase.Rd | 2 - 25 files changed, 113 insertions(+), 101 deletions(-)
Title: Diffs for R Objects
Description: Generate a colorized diff of two R objects for an intuitive
visualization of their differences.
Author: Brodie Gaslam [aut, cre],
Michael B. Allen [ctb, cph] (Original C implementation of Myers Diff
Algorithm)
Maintainer: Brodie Gaslam <brodie.gaslam@yahoo.com>
Diff between diffobj versions 0.1.10 dated 2018-06-10 and 0.1.11 dated 2018-07-29
DESCRIPTION | 12 +-- MD5 | 129 +++++++++++++++++----------------- NEWS.md | 9 ++ R/capt.R | 46 ++++++++---- R/check.R | 23 ++++-- R/core.R | 6 + R/diff.R | 6 + R/finalizer.R | 7 + R/get.R | 2 R/guides.R | 2 R/html.R | 2 R/hunks.R | 2 R/layout.R | 2 R/misc.R | 26 +++++- R/myerssimple.R | 2 R/pager.R | 56 +++++++++++++- R/rdiff.R | 2 R/rds.R | 2 R/s4.R | 2 R/set.R | 50 ------------- R/styles.R | 15 ++- R/subset.R | 2 R/summmary.R | 4 - R/system.R | 8 +- R/text.R | 10 ++ R/tochar.R | 2 R/trim.R | 10 ++ R/word.R | 2 build/vignette.rds |binary inst/COPYRIGHTS | 2 inst/doc/diffobj.R | 2 inst/doc/diffobj.Rmd | 4 - inst/doc/diffobj.html | 11 +- inst/doc/embed.R |only inst/doc/embed.Rmd |only inst/doc/embed.html |only inst/doc/metacomp.R | 1 inst/doc/metacomp.Rmd | 1 man/Pager.Rd | 4 - man/Style.Rd | 4 - man/diffChr.Rd | 4 - man/diffCsv.Rd | 4 - man/diffDeparse.Rd | 4 - man/diffFile.Rd | 4 - man/diffPrint.Rd | 4 - man/diffStr.Rd | 4 - man/pager_is_less.Rd | 2 src/diff.c | 2 src/diff.h | 2 src/diffobj.c | 2 src/diffobj.h | 2 src/init.c | 2 tests/testthat/helper/html/300.rds |binary tests/testthat/helper/html/350.rds |binary tests/testthat/helper/summary/900.rds |binary tests/testthat/helper/trim/50.rds |only tests/testthat/testthat.check.R | 38 ++++++++++ tests/testthat/testthat.guide.R | 20 ++--- tests/testthat/testthat.html.R | 3 tests/testthat/testthat.methods.R | 6 + tests/testthat/testthat.misc.R | 9 ++ tests/testthat/testthat.ses.R | 34 ++++++++ tests/testthat/testthat.subset.R | 2 tests/testthat/testthat.trim.R | 25 +++--- tests/testthat/testthat.warnings.R | 6 + vignettes/diffobj.Rmd | 4 - vignettes/embed.Rmd |only vignettes/metacomp.Rmd | 1 68 files changed, 435 insertions(+), 219 deletions(-)
Title: Functional Clustering Algorithms
Description: Unified framework to cluster functional data according to one of
seven models. All models are based on the projection of the curves onto a basis.
The main function funcit() calls wrapper functions for the existing algorithms,
so that input parameters are the same. A list is returned with each entry
representing the same or extended output for the corresponding method. Method
specific as well as general visualization tools are available.
Author: Christina Yassouridis [aut, cre],
Dominik Ernst [ctb],
Madison Giacofci [ctb],
Sophie Lambert-Lacroix [ctb],
Guillemette Marot [ctb],
Franck Picard [ctb],
Nicoleta Serban [ctb],
Huijing Jiang [ctb],
Gareth James [ctb],
Catherine Sugar [ctb],
Hans-Georg Mueller [ctb],
Jie Peng [ctb],
Chiou Jeng-Min [ctb],
Pai-Ling Li [ctb]
Maintainer: Christina Yassouridis <chris.yassou@gmail.com>
Diff between funcy versions 0.9.0 dated 2018-06-25 and 1.0.0 dated 2018-07-29
funcy-0.9.0/funcy/tests/testMethods.R |only funcy-1.0.0/funcy/DESCRIPTION | 12 funcy-1.0.0/funcy/MD5 | 59 funcy-1.0.0/funcy/NAMESPACE | 107 - funcy-1.0.0/funcy/NEWS.md | 42 funcy-1.0.0/funcy/R/Rfscm.R | 486 +++--- funcy-1.0.0/funcy/R/classesCurvclust.R | 694 ++++---- funcy-1.0.0/funcy/R/fitfclust.R | 2080 +++++++++++++------------- funcy-1.0.0/funcy/R/format.R | 21 funcy-1.0.0/funcy/R/funPrinComp.R | 900 +++++------ funcy-1.0.0/funcy/R/functions.R | 951 +++++------ funcy-1.0.0/funcy/R/wrappers.R | 944 +++++------ funcy-1.0.0/funcy/R/xecute.R | 634 +++---- funcy-1.0.0/funcy/inst/CITATION |only funcy-1.0.0/funcy/inst/COPYRIGHTS | 106 - funcy-1.0.0/funcy/man/bones.Rd | 62 funcy-1.0.0/funcy/man/dist2centers.Rd | 6 funcy-1.0.0/funcy/man/formatFuncy.Rd | 6 funcy-1.0.0/funcy/man/funcit.Rd | 531 +++--- funcy-1.0.0/funcy/man/funcyCtrl-class.Rd | 6 funcy-1.0.0/funcy/man/funcyOut-class.Rd | 5 funcy-1.0.0/funcy/man/funcyOutList-methods.Rd | 108 - funcy-1.0.0/funcy/man/funcyOutList.Rd | 6 funcy-1.0.0/funcy/man/genes.Rd | 56 funcy-1.0.0/funcy/man/getUniCl.Rd | 120 - funcy-1.0.0/funcy/man/makeCommonTime.Rd | 5 funcy-1.0.0/funcy/man/plot.Rd | 238 +- funcy-1.0.0/funcy/man/regFuncy.Rd | 170 +- funcy-1.0.0/funcy/man/sampleFuncy.Rd | 13 funcy-1.0.0/funcy/src/libmain.cc | 1 funcy-1.0.0/funcy/tests/testthat |only funcy-1.0.0/funcy/tests/testthat.R |only 32 files changed, 4214 insertions(+), 4155 deletions(-)
Title: Estimation of Distribution Algorithms Based on Copulas
Description: Provides a platform where EDAs (estimation of
distribution algorithms) based on copulas can be implemented and
studied. The package offers complete implementations of various
EDAs based on copulas and vines, a group of well-known
optimization problems, and utility functions to study the
performance of the algorithms. Newly developed EDAs can be easily
integrated into the package by extending an S4 class with generic
functions for their main components.
Author: Yasser Gonzalez-Fernandez [aut, cre],
Marta Soto [aut]
Maintainer: Yasser Gonzalez-Fernandez <ygonzalezfernandez@gmail.com>
Diff between copulaedas versions 1.4.2 dated 2015-10-22 and 1.4.3 dated 2018-07-29
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS | 4 ++++ R/CEDA.R | 2 +- 4 files changed, 11 insertions(+), 7 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-11-13 1.0-3
2012-10-19 1.0-2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-10-06 0.1.0