Title: Adaptive Sparsity Models
Description: Implements Figueiredo EM algorithm for adaptive sparsity (Jeffreys prior) (see Figueiredo, M.A.T.; , "Adaptive sparseness for supervised learning," Pattern Analysis and Machine Intelligence, IEEE Transactions on , vol.25, no.9, pp. 1150- 1159, Sept. 2003) and Wong algorithm for adaptively sparse gaussian geometric models (see Wong, Eleanor, Suyash Awate, and P. Thomas Fletcher. "Adaptive Sparsity in Gaussian Graphical Models." In Proceedings of the 30th International Conference on Machine Learning (ICML-13), pp. 311-319. 2013.)
Author: Kristen Zygmunt, Eleanor Wong, Tom Fletcher
Maintainer: Kris Campbell <kris@sci.utah.edu>
Diff between AdaptiveSparsity versions 1.5 dated 2018-07-10 and 1.6 dated 2018-08-20
DESCRIPTION | 10 +++++----- MD5 | 6 +++--- NAMESPACE | 1 + man/asggm.Rd | 9 ++++----- 4 files changed, 13 insertions(+), 13 deletions(-)
More information about AdaptiveSparsity at CRAN
Permanent link
Title: Global Charcoal Database
Description: Contains the Global Charcoal database data. Data include charcoal
series (age, depth, charcoal quantity, associated units and methods) and
information on sedimentary sites (localisation, depositional environment, biome,
etc.) as well as publications informations. Since 4.0.0 the GCD mirrors the online SQL database at <http://paleofire.org>.
Author: Global Paleofire Working Group <paleofire@univ-fcomte.fr>
Maintainer: Olivier Blarquez <blarquez@gmail.com>
Diff between GCD versions 4.0.2 dated 2018-05-02 and 4.0.3 dated 2018-08-20
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- NEWS | 8 ++++++++ data/paleofiredata.rda |binary data/paleofiresites.rda |binary data/pub.rda |binary data/pub_key.rda |binary data/release.rda |binary 8 files changed, 19 insertions(+), 11 deletions(-)
Title: Trajectory Miner: a Toolbox for Exploring and Rendering
Sequences
Description: Toolbox for the manipulation, description and rendering of sequences, and more generally the mining of sequence data in the field of social sciences. Although the toolbox is primarily intended for analyzing state or event sequences that describe life courses such as family formation histories or professional careers, its features also apply to many other kinds of categorical sequence data. It accepts many different sequence representations as input and provides tools for converting sequences from one format to another. It offers several functions for describing and rendering sequences, for computing distances between sequences with different metrics (among which optimal matching), original dissimilarity-based analysis tools, and simple functions for extracting the most frequent subsequences and identifying the most discriminating ones among them. A user's guide can be found on the TraMineR web page.
Author: Alexis Gabadinho [aut, cph],
Matthias Studer [aut, cph],
Nicolas Müller [aut],
Reto Bürgin [aut],
Pierre-Alexandre Fonta [aut],
Gilbert Ritschard [aut, cre, cph]
Maintainer: Gilbert Ritschard <gilbert.ritschard@unige.ch>
Diff between TraMineR versions 2.0-8 dated 2018-01-27 and 2.0-9 dated 2018-08-20
DESCRIPTION | 8 +-- MD5 | 90 +++++++++++++++++------------------ NEWS | 40 ++++++++++++++- R/TraMineR-legend.R | 29 ++++++----- R/dissrep.R | 1 R/plot.stslist.R | 10 ++- R/plot.stslist.freq.R | 7 +- R/plot.stslist.modst.R | 7 ++ R/plot.stslist.rep.R | 7 +- R/plot.stslist.statd.R | 8 ++- R/seqdef.R | 10 ++- R/seqdiff.R | 14 ++++- R/seqdist-CHI2.R | 2 R/seqformat-SPELL_to_STS.R | 81 ++++++++++++++++++------------- R/seqformat-STS_to_SPELL.R | 2 R/seqformat.R | 17 +++--- R/seqmodst.R | 3 - R/seqplot.R | 10 +++ R/seqrep.R | 1 R/seqstatd.R | 9 +-- build/vignette.rds |binary data/ex1.rda |binary data/ex2.rda |binary data/famform.rda |binary inst/CITATION | 14 ++--- inst/NEWS.Rd | 46 +++++++++++++++++ inst/doc/TraMineR-state-sequence.pdf |binary man/TraMineR-package.Rd | 3 - man/TraMineR.check.depr.args.Rd | 4 - man/disstree2dot.Rd | 2 man/plot.seqdiff.Rd | 3 - man/plot.stslist.Rd | 10 ++- man/plot.stslist.freq.Rd | 4 + man/plot.stslist.modst.Rd | 5 + man/plot.stslist.rep.Rd | 3 - man/plot.stslist.statd.Rd | 5 + man/seqdef.Rd | 8 +-- man/seqdiff.Rd | 6 +- man/seqecmpgroup.Rd | 9 ++- man/seqeid.Rd | 4 + man/seqelength.Rd | 3 - man/seqformat.Rd | 36 ++++++++------ man/seqfpos.Rd | 4 - man/seqpcplot.Rd | 33 +++++++----- man/seqtab.Rd | 4 + man/str.seqe.Rd | 2 46 files changed, 367 insertions(+), 197 deletions(-)
Title: Pseudo-Realizations for Gaussian Process Excursions
Description: Computes pseudo-realizations from the posterior distribution of a Gaussian Process (GP) with the method described in Azzimonti et al. (2016) <doi:10.1137/141000749>. The realizations are obtained from simulations of the field at few well chosen points that minimize the expected distance in measure between the true excursion set of the field and the approximate one. Also implements a R interface for (the main function of) Distance Transform of sampled Functions (<http://cs.brown.edu/people/pfelzens/dt/index.html>).
Author: Dario Azzimonti [aut, cre, cph]
(<https://orcid.org/0000-0001-5080-3061>),
Julien Bect [ctb],
Pedro Felzenszwalb [ctb, cph] (Original dt code,
http://cs.brown.edu/people/pfelzens/dt/index.html)
Maintainer: Dario Azzimonti <dario.azzimonti@gmail.com>
Diff between pGPx versions 0.1.0 dated 2018-08-17 and 0.1.1 dated 2018-08-20
DESCRIPTION | 15 +++++++------- MD5 | 41 ++++++++++++++++++++-------------------- NEWS.md |only R/DTvar.R | 5 +++- R/computeVolumes.R | 4 ++- R/compute_contourLength.R | 6 ++++- R/expDistMeasure.R | 25 +++++++++++++----------- R/help.R | 4 +-- R/simulate_and_interpolate.R | 4 ++- man/DTV.Rd | 5 +++- man/computeVolumes.Rd | 4 ++- man/compute_contourLength.Rd | 6 ++++- man/edm_crit.Rd | 6 ++--- man/edm_crit2.Rd | 6 ++--- man/expDistMeasure.Rd | 25 +++++++++++++----------- man/grad_kweights.Rd | 3 +- man/integrand_edm_crit.Rd | 4 +-- man/optim_dist_measure.Rd | 5 ++-- man/pGPx.Rd | 4 +-- man/simulate_and_interpolate.Rd | 4 ++- src/dt.h | 2 - src/dtt_fast.cpp | 1 22 files changed, 106 insertions(+), 73 deletions(-)
Title: Import and Analyse Ego-Centered Network Data
Description: Tools for importing, analyzing and visualizing ego-centered
network data. Supports several data formats, including the export formats of
'EgoNet', 'EgoWeb 2.0' and 'openeddi'. An interactive (shiny) app for the
intuitive visualization of ego-centered networks is provided. Also included
are procedures for creating and visualizing Clustered Graphs
(Lerner 2008 <DOI:10.1109/PACIFICVIS.2008.4475458>).
Author: Markus Gamper [aut],
Andreas Herz [aut],
Till Krenz [aut, cre],
Christopher McCarty [aut],
Pavel N. Krivitsky [aut],
Raffaele Vacca [aut]
Maintainer: Till Krenz <egor@tillt.net>
Diff between egor versions 0.18.06-02 dated 2018-07-02 and 0.18.08-02 dated 2018-08-20
egor-0.18.06-02/egor/tests/testthat/test_read_folders.R |only egor-0.18.08-02/egor/DESCRIPTION | 10 egor-0.18.08-02/egor/MD5 | 59 +- egor-0.18.08-02/egor/R/clustered.graphs.R | 11 egor-0.18.08-02/egor/R/composition.R | 20 - egor-0.18.08-02/egor/R/conversions.R | 23 - egor-0.18.08-02/egor/build/vignette.rds |binary egor-0.18.08-02/egor/inst/doc/using_egor.html | 40 +- egor-0.18.08-02/egor/man/clustered_graphs.Rd | 4 egor-0.18.08-02/egor/man/convert_egor.Rd | 4 egor-0.18.08-02/egor/man/ego_density.Rd | 4 egor-0.18.08-02/egor/man/egor.Rd | 26 - egor-0.18.08-02/egor/man/onefile_to_egor.Rd | 36 - egor-0.18.08-02/egor/man/read_egonet.Rd | 28 - egor-0.18.08-02/egor/man/threefiles_to_egor.Rd | 45 +- egor-0.18.08-02/egor/man/twofiles_to_egor.Rd | 30 - egor-0.18.08-02/egor/man/vert.attr.multi.Rd | 4 egor-0.18.08-02/egor/man/vis_clustered_graphs.Rd | 8 egor-0.18.08-02/egor/man/wide.dyads.to.edgelist.regex.Rd | 6 egor-0.18.08-02/egor/tests/testthat.R | 1 egor-0.18.08-02/egor/tests/testthat/test_clustered_graphs.R | 238 ++++-------- egor-0.18.08-02/egor/tests/testthat/test_composition.R | 46 +- egor-0.18.08-02/egor/tests/testthat/test_conversions.R | 134 +++--- egor-0.18.08-02/egor/tests/testthat/test_density.R | 43 -- egor-0.18.08-02/egor/tests/testthat/test_dplyr_methods.R | 97 ++-- egor-0.18.08-02/egor/tests/testthat/test_egor.R | 128 +++--- egor-0.18.08-02/egor/tests/testthat/test_egoweb.R | 2 egor-0.18.08-02/egor/tests/testthat/test_ei.R | 157 +++++-- egor-0.18.08-02/egor/tests/testthat/test_openeddi.R | 1 egor-0.18.08-02/egor/tests/testthat/test_read.R | 92 ++-- egor-0.18.08-02/egor/tests/testthat/test_read_three_files.R | 28 - 31 files changed, 671 insertions(+), 654 deletions(-)
Title: Archive and Unarchive Databases Using Flat Files
Description: Flat text files provide a robust, compressible, and portable
way to store tables from databases. This package provides convenient
functions for exporting tables from relational database connections
into compressed text files and streaming those text files back into
a database without requiring the whole table to fit in working memory.
Author: Carl Boettiger [aut, cre, cph]
(<https://orcid.org/0000-0002-1642-628X>),
Richard FitzJohn [ctb]
Maintainer: Carl Boettiger <cboettig@gmail.com>
Diff between arkdb versions 0.0.1 dated 2018-08-20 and 0.0.2 dated 2018-08-20
DESCRIPTION | 10 ++--- MD5 | 10 ++--- NEWS.md | 8 +++- README.md | 35 ++++++++++--------- inst/doc/arkdb.html | 78 ++++++++++++++++++++++---------------------- tests/testthat/test-arkdb.R | 20 ++++++++++- 6 files changed, 91 insertions(+), 70 deletions(-)
Title: The Spike-and-Slab LASSO
Description: Efficient coordinate ascent algorithm for fitting regularization paths for linear models penalized by Spike-and-Slab LASSO of Rockova and George (2018) <doi:10.1080/01621459.2016.1260469>.
Author: Veronika Rockova [aut,cre], Gemma Moran [aut]
Maintainer: Gemma Moran <gmoran@wharton.upenn.edu>
Diff between SSLASSO versions 1.1 dated 2018-06-22 and 1.2 dated 2018-08-20
SSLASSO-1.1/SSLASSO/src/SSL.c |only SSLASSO-1.1/SSLASSO/src/init.c |only SSLASSO-1.2/SSLASSO/DESCRIPTION | 10 SSLASSO-1.2/SSLASSO/MD5 | 20 - SSLASSO-1.2/SSLASSO/NAMESPACE | 4 SSLASSO-1.2/SSLASSO/R/SSLASSO.R | 170 +++++++----- SSLASSO-1.2/SSLASSO/R/standard.R |only SSLASSO-1.2/SSLASSO/inst/CITATION | 13 SSLASSO-1.2/SSLASSO/man/SSLASSO.Rd | 71 ++--- SSLASSO-1.2/SSLASSO/man/plot.SSLASSO.Rd | 3 SSLASSO-1.2/SSLASSO/man/standard.Rd |only SSLASSO-1.2/SSLASSO/src/SSLASSO_init.c |only SSLASSO-1.2/SSLASSO/src/SSL_functions.c |only SSLASSO-1.2/SSLASSO/src/SSL_gaussian.c | 448 +++++++++++++++++++++----------- 14 files changed, 466 insertions(+), 273 deletions(-)
Title: Visualizing Panel Data with Dichotomous Treatments
Description: Visualizes panel data with dichotomous treatments. It has two main functionalities: (1) it visualizes the treatment and missing-value statuses of each observation in a panel/time-series-cross-sectional (TSCS) dataset; and (2) it plots the outcome variable (either continuous or discrete) in a time-series fashion.
Author: Licheng Liu, Yiqing Xu
Maintainer: Yiqing Xu <yiqingxu@ucsd.edu>
Diff between panelView versions 1.0.1 dated 2018-04-24 and 1.0.5 dated 2018-08-20
DESCRIPTION | 10 MD5 | 8 R/panelView.R | 730 ++++++++++++++++++++++++++++++++++++++----------------- man/capacity.Rd | 2 man/panelView.Rd | 41 +-- 5 files changed, 547 insertions(+), 244 deletions(-)
Title: Nonlinear Calibration
Description: Performs nonlinear calibration and curve fitting for data from Luminex, RT-PCR, ELISA, RPPA etc. Its precursor is Ruminex. This package is described in nCal: a R package for nonlinear calibration. Bioinformatics, <DOI:10.1093/bioinformatics/btt456>.
Author: Youyi Fong <youyifong@gmail.com>, Krisztian Sebestyen <ksebestyen@gmail.com>, Xuesong Yu <xyu@scharp.org>
Maintainer: Youyi Fong <youyifong@gmail.com>
Diff between nCal versions 2017.12-3 dated 2017-12-03 and 2018.8-20 dated 2018-08-20
ChangeLog | 3 ++ DESCRIPTION | 6 ++--- MD5 | 34 ++++++++++++++-------------- R/5pl.R | 2 - R/bcrm.R | 14 +++++------ R/glspl.R | 2 - R/gnls_fit.R | 10 ++++---- R/inla.R | 16 ++++++------- R/mle.R | 2 - R/ncal.R | 28 +++++++++++------------ R/ncalGUI.R | 2 - build/vignette.rds |binary inst/doc/nCal-vignette.pdf |binary inst/misc/02-14A22-IgA-Biotin.xls |binary inst/unitTests/runit.5PL.R | 10 +++++--- inst/unitTests/runit.ncal.R | 45 ++++++++++++++++++++------------------ man/ncal.Rd | 3 -- tests/doRUnit.R | 20 +++++++--------- 18 files changed, 101 insertions(+), 96 deletions(-)
Title: Classes and Methods for Lagged Objects
Description: Provides classes and methods for lagged objects.
Author: Georgi N. Boshnakov [aut, cre]
Maintainer: Georgi N. Boshnakov <georgi.boshnakov@manchester.ac.uk>
Diff between lagged versions 0.1-1 dated 2017-10-15 and 0.2-0 dated 2018-08-20
lagged-0.1-1/lagged/NEWS |only lagged-0.2-0/lagged/DESCRIPTION | 17 +- lagged-0.2-0/lagged/MD5 | 41 ++++-- lagged-0.2-0/lagged/NAMESPACE | 22 ++- lagged-0.2-0/lagged/NEWS.md |only lagged-0.2-0/lagged/R/lagged.R | 41 ++++++ lagged-0.2-0/lagged/R/pc20slMatrix.r |only lagged-0.2-0/lagged/R/utils.R | 79 +++++++++++ lagged-0.2-0/lagged/README.md |only lagged-0.2-0/lagged/build |only lagged-0.2-0/lagged/inst |only lagged-0.2-0/lagged/man/Lagged-class.Rd | 18 +- lagged-0.2-0/lagged/man/Lagged.Rd | 119 ++++++++++++++--- lagged-0.2-0/lagged/man/Lagged1d-class.Rd | 8 + lagged-0.2-0/lagged/man/acf2Lagged.Rd | 11 - lagged-0.2-0/lagged/man/bracket-methods.Rd | 127 +++++++++---------- lagged-0.2-0/lagged/man/bracketass-methods.Rd | 4 lagged-0.2-0/lagged/man/bracketbracket-methods.Rd |only lagged-0.2-0/lagged/man/bracketbracketass-methods.Rd |only lagged-0.2-0/lagged/man/dataWithLagNames.Rd | 21 ++- lagged-0.2-0/lagged/man/fill.slMatrix-methods.Rd |only lagged-0.2-0/lagged/man/maxLag.Rd | 12 + lagged-0.2-0/lagged/man/maxLagass.Rd |only lagged-0.2-0/lagged/man/slMatrix-class.Rd |only lagged-0.2-0/lagged/man/slMatrix.Rd |only lagged-0.2-0/lagged/vignettes |only 26 files changed, 394 insertions(+), 126 deletions(-)
Title: Reinforcement Learning Trees
Description: Random forest with a variety of additional features for regression, classification and survival analysis. The features include: parallel computing with OpenMP, embedded model for selecting the splitting variable (based on Zhu, Zeng & Kosorok, 2015), subject weight, variable weight, tracking subjects used in each tree, etc.
Author: Ruoqing Zhu <teazrq@gmail.com>
Maintainer: Ruoqing Zhu <teazrq@gmail.com>
Diff between RLT versions 3.2.1 dated 2017-11-19 and 3.2.2 dated 2018-08-20
RLT-3.2.1/RLT/src/Makevars.win |only RLT-3.2.2/RLT/DESCRIPTION | 10 +++++----- RLT-3.2.2/RLT/MD5 | 20 ++++++++++---------- RLT-3.2.2/RLT/README.md |only RLT-3.2.2/RLT/inst/NEWS | 6 ++++++ RLT-3.2.2/RLT/man/RLT.Rd | 21 +++++++++++---------- RLT-3.2.2/RLT/src/Makevars | 5 ++++- RLT-3.2.2/RLT/src/RLT.c | 1 - RLT-3.2.2/RLT/src/RLT_classification.c | 1 - RLT-3.2.2/RLT/src/RLT_regression.c | 1 - RLT-3.2.2/RLT/src/RLT_survival.c | 1 - RLT-3.2.2/RLT/src/RLT_utility.c | 1 - 12 files changed, 36 insertions(+), 31 deletions(-)
Title: Tutorial Analysis of Some Agricultural Experiments
Description: Example software for the analysis of data from designed
experiments, especially agricultural crop experiments. The basics
of the analysis of designed experiments are discussed
using real examples from agricultural field trials.
A range of statistical methods using a range
of R statistical packages are exemplified . The experimental
data is made available as separate data sets for each example
and the R analysis code is made available as example code.
The example code can be readily extended, as required.
Author: Rodney Edmondson [aut, cre],
Hans-Peter Piepho [aut, ctb],
Muhammad Yaseen [aut, ctb]
Maintainer: Rodney Edmondson <rodney.edmondson@gmail.com>
Diff between agriTutorial versions 0.1.3 dated 2018-03-23 and 0.1.4 dated 2018-08-20
agriTutorial-0.1.3/agriTutorial/inst/doc/agriTutorial.R |only agriTutorial-0.1.3/agriTutorial/inst/doc/agriTutorial.Rmd |only agriTutorial-0.1.3/agriTutorial/inst/doc/agriTutorial.html |only agriTutorial-0.1.3/agriTutorial/vignettes/agriTutorial.Rmd |only agriTutorial-0.1.4/agriTutorial/DESCRIPTION | 23 +++-- agriTutorial-0.1.4/agriTutorial/MD5 | 19 ++-- agriTutorial-0.1.4/agriTutorial/R/example3.R | 6 - agriTutorial-0.1.4/agriTutorial/R/example4.R | 41 +++++----- agriTutorial-0.1.4/agriTutorial/build/vignette.rds |binary agriTutorial-0.1.4/agriTutorial/inst/doc/agriTutorialVignette.pdf |only agriTutorial-0.1.4/agriTutorial/inst/doc/agriTutorialVignette.pdf.asis |only agriTutorial-0.1.4/agriTutorial/man/example3.Rd | 6 - agriTutorial-0.1.4/agriTutorial/man/example4.Rd | 40 +++++---- agriTutorial-0.1.4/agriTutorial/vignettes/agriTutorialVignette.pdf.asis |only 14 files changed, 72 insertions(+), 63 deletions(-)
Title: Analysis of Convergent Evolution
Description: Quantifies and assesses the significance of convergent evolution using two different methods (and 5 different measures) as described in Stayton (2015) <DOI: 10.1111/evo.12729>. Also displays results in a phylomorphospace framework.
Author: C. Tristan Stayton [aut, cre]
Maintainer: C. Tristan Stayton <tstayton@bucknell.edu>
Diff between convevol versions 1.1 dated 2017-11-02 and 1.2 dated 2018-08-20
DESCRIPTION | 13 +++--- MD5 | 20 +++++----- NAMESPACE | 8 +++- R/ancestrallineages.R |only R/convnum.R | 6 ++- R/convnumsig.R | 1 R/convrat.R | 94 ++++++++++++++++++++++++++++++++++++----------- R/maxdist.R | 4 +- R/plotellipse.R | 4 +- man/ancestrallineages.Rd |only man/convnumsig.Rd | 4 +- man/convrat.Rd | 15 +++++-- 12 files changed, 121 insertions(+), 48 deletions(-)
Title: Automated Data Preparation
Description: Do most of the painful data preparation for a data science project with a minimum amount of code; Take advantages of data.table efficiency and use some algorithmic trick in order to perform data preparation in a time and RAM efficient way.
Author: Emmanuel-Lin Toulemonde [aut, cre]
Maintainer: Emmanuel-Lin Toulemonde <el.toulemonde@protonmail.com>
Diff between dataPreparation versions 0.3.6 dated 2018-05-11 and 0.3.7 dated 2018-08-20
DESCRIPTION | 8 +- MD5 | 83 ++++++++++++------------ NAMESPACE | 1 NEWS | 20 +++++ NEWS.md | 20 +++++ R/aggregate.R | 19 ++--- R/datesManipulations.R | 52 +++++++++++---- R/description.R | 20 ++--- R/discretization.R | 5 - R/factorManipulation.R | 6 + R/fastFunctions.r | 24 +++---- R/fast_posixct.R |only R/generateFromCharacter.R | 6 - R/generateFromDate.R | 24 +++---- R/generateFromFactor.R | 12 +-- R/genericFunctions.R | 25 ++++--- R/numericsManipulations.R | 20 +++-- R/onLoad.R | 6 - R/prepareSet.R | 14 ++-- R/sameShape.R | 4 - R/scale.R | 2 R/setColAs.R | 23 +++--- R/shapeSet.R | 14 +--- R/whichFunctions.R | 22 +++--- build/vignette.rds |binary inst/doc/dataPreparation.html | 94 ++++++++++++++++------------ inst/doc/train_test_prep.html | 20 ++--- man/as.POSIXct_fast.Rd |only man/build_encoding.Rd | 4 - man/fastFilterVariables.Rd | 4 - man/fastHandleNa.Rd | 4 - man/findAndTransformDates.Rd | 9 ++ man/findAndTransformNumerics.Rd | 10 ++ man/identifyDates.Rd | 5 + man/one_hot_encoder.Rd | 3 man/setColAsDate.Rd | 5 - man/shapeSet.Rd | 3 man/unFactor.Rd | 5 + tests/testthat/test_datesManipulation.R | 16 ++++ tests/testthat/test_fastFunctions.R | 2 tests/testthat/test_fast_posixct.R |only tests/testthat/test_generateFromDate.R | 1 tests/testthat/test_numericsManipulations.R | 1 tests/testthat/test_shapeSet.R | 6 - 44 files changed, 378 insertions(+), 244 deletions(-)
More information about dataPreparation at CRAN
Permanent link
Title: Functions to Analyze Single System Data
Description: Functions to visually and statistically analyze single system data.
Author: Charles Auerbach [aut, cre],
Wendy Zeitlin [aut]
Maintainer: Charles Auerbach <auerbach@yu.edu>
Diff between SSDforR versions 1.4.18 dated 2018-04-22 and 1.4.19 dated 2018-08-20
DESCRIPTION | 8 ++++---- MD5 | 2 +- 2 files changed, 5 insertions(+), 5 deletions(-)
Title: Collection of Convenient Functions for Common Statistical
Computations
Description: Collection of convenient functions for common statistical computations,
which are not directly provided by R's base or stats packages.
This package aims at providing, first, shortcuts for statistical
measures, which otherwise could only be calculated with additional
effort (like standard errors or root mean squared errors). Second,
these shortcut functions are generic (if appropriate), and can be
applied not only to vectors, but also to other objects as well
(e.g., the Coefficient of Variation can be computed for vectors,
linear models, or linear mixed models; the r2()-function returns
the r-squared value for 'lm', 'glm', 'merMod' and other model objects).
The focus of most functions lies on summary statistics or fit
measures for regression models, including generalized linear
models, mixed effects models and Bayesian models. However, some
of the functions also deal with other statistical measures,
like Cronbach's Alpha, Cramer's V, Phi etc.
Author: Daniel Lüdecke [aut, cre] (<https://orcid.org/0000-0002-8895-3206>)
Maintainer: Daniel Lüdecke <d.luedecke@uke.de>
Diff between sjstats versions 0.16.0 dated 2018-07-10 and 0.17.0 dated 2018-08-20
sjstats-0.16.0/sjstats/R/merMod_p.R |only sjstats-0.16.0/sjstats/R/pseudo_r2.R |only sjstats-0.17.0/sjstats/DESCRIPTION | 35 sjstats-0.17.0/sjstats/MD5 | 159 - sjstats-0.17.0/sjstats/NAMESPACE | 32 sjstats-0.17.0/sjstats/NEWS.md | 187 -- sjstats-0.17.0/sjstats/R/HDI.R | 10 sjstats-0.17.0/sjstats/R/S3-methods.R | 162 + sjstats-0.17.0/sjstats/R/auto_prior.R | 4 sjstats-0.17.0/sjstats/R/boot_ci.R | 6 sjstats-0.17.0/sjstats/R/bootstrap.R | 5 sjstats-0.17.0/sjstats/R/check_model_assumptions.R | 22 sjstats-0.17.0/sjstats/R/cv_error.R | 159 - sjstats-0.17.0/sjstats/R/equi_test.R | 14 sjstats-0.17.0/sjstats/R/eta_sq.R | 72 sjstats-0.17.0/sjstats/R/find_beta.R | 380 ++-- sjstats-0.17.0/sjstats/R/gmd.R | 1 sjstats-0.17.0/sjstats/R/gof.R | 4 sjstats-0.17.0/sjstats/R/grpmean.R | 69 sjstats-0.17.0/sjstats/R/helpfunctions.R | 15 sjstats-0.17.0/sjstats/R/icc.R | 354 ++-- sjstats-0.17.0/sjstats/R/internal_consistency.R | 15 sjstats-0.17.0/sjstats/R/mcse.R | 15 sjstats-0.17.0/sjstats/R/mediation.R | 5 sjstats-0.17.0/sjstats/R/mwu.R | 47 sjstats-0.17.0/sjstats/R/n_eff.R | 3 sjstats-0.17.0/sjstats/R/overdisp.R | 31 sjstats-0.17.0/sjstats/R/p_value.R |only sjstats-0.17.0/sjstats/R/pca.R | 35 sjstats-0.17.0/sjstats/R/phi.R | 2 sjstats-0.17.0/sjstats/R/pred_vars.R | 35 sjstats-0.17.0/sjstats/R/prop.R | 50 sjstats-0.17.0/sjstats/R/r2.R |only sjstats-0.17.0/sjstats/R/rmse.R | 4 sjstats-0.17.0/sjstats/R/robust.R | 149 + sjstats-0.17.0/sjstats/R/rope.R | 3 sjstats-0.17.0/sjstats/R/se.R | 132 + sjstats-0.17.0/sjstats/R/select_helpers.R |only sjstats-0.17.0/sjstats/R/std_b.R | 64 sjstats-0.17.0/sjstats/R/svy_scale_weights.R | 3 sjstats-0.17.0/sjstats/R/tidy_stan.R | 102 - sjstats-0.17.0/sjstats/R/typical.R | 10 sjstats-0.17.0/sjstats/R/weight.R | 73 sjstats-0.17.0/sjstats/R/wtd_ttest.R |only sjstats-0.17.0/sjstats/R/xtab_statistics.R | 40 sjstats-0.17.0/sjstats/README.md | 6 sjstats-0.17.0/sjstats/build/partial.rdb |binary sjstats-0.17.0/sjstats/inst/doc/anova-statistics.R | 2 sjstats-0.17.0/sjstats/inst/doc/anova-statistics.Rmd | 4 sjstats-0.17.0/sjstats/inst/doc/anova-statistics.html | 422 +++- sjstats-0.17.0/sjstats/inst/doc/bayesian-statistics.R | 2 sjstats-0.17.0/sjstats/inst/doc/bayesian-statistics.Rmd | 2 sjstats-0.17.0/sjstats/inst/doc/bayesian-statistics.html | 1060 +++++++----- sjstats-0.17.0/sjstats/inst/doc/mixedmodels-statistics.R | 7 sjstats-0.17.0/sjstats/inst/doc/mixedmodels-statistics.Rmd | 12 sjstats-0.17.0/sjstats/inst/doc/mixedmodels-statistics.html | 533 ++++-- sjstats-0.17.0/sjstats/man/auto_prior.Rd | 5 sjstats-0.17.0/sjstats/man/bootstrap.Rd | 2 sjstats-0.17.0/sjstats/man/check_assumptions.Rd | 2 sjstats-0.17.0/sjstats/man/cod.Rd | 2 sjstats-0.17.0/sjstats/man/cv_error.Rd | 2 sjstats-0.17.0/sjstats/man/gmd.Rd | 1 sjstats-0.17.0/sjstats/man/grpmean.Rd | 12 sjstats-0.17.0/sjstats/man/hdi.Rd | 8 sjstats-0.17.0/sjstats/man/icc.Rd | 206 +- sjstats-0.17.0/sjstats/man/mwu.Rd | 19 sjstats-0.17.0/sjstats/man/overdisp.Rd | 10 sjstats-0.17.0/sjstats/man/p_value.Rd | 2 sjstats-0.17.0/sjstats/man/pred_vars.Rd | 7 sjstats-0.17.0/sjstats/man/prop.Rd | 4 sjstats-0.17.0/sjstats/man/re_var.Rd | 3 sjstats-0.17.0/sjstats/man/reliab_test.Rd | 16 sjstats-0.17.0/sjstats/man/robust.Rd | 54 sjstats-0.17.0/sjstats/man/se.Rd | 89 - sjstats-0.17.0/sjstats/man/smpsize_lmm.Rd | 4 sjstats-0.17.0/sjstats/man/typical_value.Rd | 2 sjstats-0.17.0/sjstats/man/weight.Rd | 2 sjstats-0.17.0/sjstats/man/wtd_sd.Rd | 85 sjstats-0.17.0/sjstats/man/xtab_statistics.Rd | 15 sjstats-0.17.0/sjstats/tests |only sjstats-0.17.0/sjstats/vignettes/anova-statistics.Rmd | 4 sjstats-0.17.0/sjstats/vignettes/bayesian-statistics.Rmd | 2 sjstats-0.17.0/sjstats/vignettes/mixedmodels-statistics.Rmd | 12 83 files changed, 3131 insertions(+), 1997 deletions(-)
Title: Markov Model for the Online Multi-Channel Attribution Problem
Description: Advertisers use a variety of online marketing channels to reach consumers and they want to know the degree each channel contributes to their marketing success. This is called the online multi-channel attribution problem. This package contains a probabilistic algorithm for the attribution problem. The model uses a k-order Markov representation to identify structural correlations in the customer journey data. The package also contains three heuristic algorithms (first-touch, last-touch and linear-touch approach) for the same problem. The algorithms are implemented in C++.
Author: Davide Altomare, David Loris
Maintainer: Davide Altomare <davide.altomare@gmail.com>
Diff between ChannelAttribution versions 1.13 dated 2018-06-11 and 1.14 dated 2018-08-20
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- src/ChannelAttribution.cpp | 1 + 3 files changed, 7 insertions(+), 6 deletions(-)
More information about ChannelAttribution at CRAN
Permanent link
Title: Plot a Model's Residuals, Response, and Partial Dependence Plots
Description: Plot model surfaces for a wide variety of models
using partial dependence plots and other techniques.
Also plot model residuals and other information on the model.
Author: Stephen Milborrow
Maintainer: Stephen Milborrow <milbo@sonic.net>
Diff between plotmo versions 3.4.2 dated 2018-07-03 and 3.5.0 dated 2018-08-20
DESCRIPTION | 6 MD5 | 113 +- NEWS | 17 R/as.char.R | 5 R/grid.R | 160 +--- R/grid.func.R |only R/lib.R | 23 R/plotmo.R | 19 R/plotresids.R | 19 R/printcall.R | 4 R/singles.R | 4 inst/doc/modguide.pdf |binary inst/doc/plotmo-notes.pdf | 1186 ++++++++++++++---------------- inst/doc/plotres-notes.pdf | 240 ++---- inst/slowtests/make.README.bat | 2 inst/slowtests/test.c50.Rout.save | 20 inst/slowtests/test.c50.bat | 2 inst/slowtests/test.caret.Rout.save | 4 inst/slowtests/test.caret.bat | 2 inst/slowtests/test.center.bat | 2 inst/slowtests/test.degree.Rout.save | 24 inst/slowtests/test.degree.bat | 2 inst/slowtests/test.dots.bat | 2 inst/slowtests/test.emma.Rout.save | 2 inst/slowtests/test.emma.bat | 2 inst/slowtests/test.fac.Rout.save | 6 inst/slowtests/test.fac.bat | 2 inst/slowtests/test.gbm.Rout.save | 7 inst/slowtests/test.gbm.bat | 2 inst/slowtests/test.glmnet.bat | 2 inst/slowtests/test.glmnetUtils.bat | 2 inst/slowtests/test.linmod.bat | 2 inst/slowtests/test.mlr.R | 4 inst/slowtests/test.mlr.Rout.save | 67 - inst/slowtests/test.mlr.bat | 2 inst/slowtests/test.modguide.bat | 2 inst/slowtests/test.non.earth.R | 7 inst/slowtests/test.non.earth.Rout.save | 39 inst/slowtests/test.non.earth.bat | 2 inst/slowtests/test.partdep.R | 4 inst/slowtests/test.partdep.Rout.save | 9 inst/slowtests/test.partdep.bat | 2 inst/slowtests/test.partykit.Rout.save | 28 inst/slowtests/test.partykit.bat | 2 inst/slowtests/test.plotmo.R | 48 + inst/slowtests/test.plotmo.Rout.save | 250 +++++- inst/slowtests/test.plotmo.args.Rout.save | 8 inst/slowtests/test.plotmo.args.bat | 2 inst/slowtests/test.plotmo.bat | 2 inst/slowtests/test.plotmo.dots.bat | 2 inst/slowtests/test.plotmo.x.bat | 2 inst/slowtests/test.plotmo3.R | 2 inst/slowtests/test.plotmo3.Rout.save | 137 +-- inst/slowtests/test.plotmo3.bat | 2 inst/slowtests/test.plotres.bat | 2 inst/slowtests/test.pre.bat | 2 inst/slowtests/test.printcall.bat | 2 man/plotmo.Rd | 16 58 files changed, 1352 insertions(+), 1176 deletions(-)
Title: Phase Plane Analysis of One and Two Dimensional Autonomous ODE
Systems
Description: Performs a qualitative analysis
of one and two dimensional autonomous ODE systems, using phase
plane methods. Programs are available to identify and classify
equilibrium points, plot the direction field, and plot trajectories
for multiple initial conditions. In the one dimensional case, a
program is also available to plot the phase portrait. Whilst in the
two dimensional case, programs are additionally available to plot
nullclines and stable/unstable manifolds of saddle points. Many
example systems are provided for the user.
Author: Michael J. Grayling [aut, cre],
Gerhard Burger [ctb]
Maintainer: Michael J. Grayling <mjg211@cam.ac.uk>
Diff between phaseR versions 1.3 dated 2014-07-16 and 2.0 dated 2018-08-20
DESCRIPTION | 42 ++-- MD5 | 171 +++++++++++------- NAMESPACE | 43 ++++ R/SIR.R | 38 ++-- R/competition.R | 47 +++- R/drawManifolds.R |only R/example1.R | 26 ++ R/example10.R | 37 +++ R/example11.R | 64 +++++- R/example12.R | 64 +++++- R/example13.R | 37 +++ R/example14.R | 37 +++ R/example15.R | 37 +++ R/example2.R | 57 +++++- R/example3.R | 35 ++- R/example4.R | 51 ++++- R/example5.R | 65 ++++++ R/example6.R | 37 +++ R/example7.R | 35 ++- R/example8.R | 37 +++ R/example9.R | 61 +++++- R/exponential.R | 30 ++- R/findEquilibrium.R |only R/flowField.R | 437 +++++++++++++++++++++++++++------------------- R/lindemannMechanism.R | 36 ++- R/logistic.R | 65 ++++++ R/lotkaVolterra.R | 40 ++-- R/monomolecular.R | 32 ++- R/morrisLecar.R |only R/nullclines.R | 250 ++++++++++++++++++-------- R/numericalSolution.R | 218 ++++++++++++++-------- R/phasePlaneAnalysis.R |only R/phasePortrait.R | 162 +++++++++++------ R/phaseR.R |only R/simplePendulum.R | 68 ++++++- R/stability.R | 284 ++++++++++++++++++----------- R/toggle.R |only R/trajectory.R | 359 +++++++++++++++++++++---------------- R/vanDerPol.R | 63 +++++- R/vonBertalanffy.R | 41 +++- build |only inst/doc/my-vignette.R |only inst/doc/my-vignette.Rmd |only inst/doc/my-vignette.html |only man/SIR.Rd | 59 ++++-- man/competition.Rd | 62 ++++-- man/dot-paramDummy.Rd |only man/drawManifolds.Rd |only man/example1.Rd | 54 +++-- man/example10.Rd | 61 ++++-- man/example11.Rd | 104 +++++++--- man/example12.Rd | 102 +++++++--- man/example13.Rd | 61 ++++-- man/example14.Rd | 61 ++++-- man/example15.Rd | 61 ++++-- man/example2.Rd | 104 +++++++--- man/example3.Rd | 61 ++++-- man/example4.Rd | 86 ++++++--- man/example5.Rd | 105 +++++++---- man/example6.Rd | 61 ++++-- man/example7.Rd | 61 ++++-- man/example8.Rd | 61 ++++-- man/example9.Rd | 97 +++++++--- man/exponential.Rd | 57 ++++-- man/findEquilibrium.Rd |only man/flowField.Rd | 192 +++++++++++++------- man/lindemannMechanism.Rd | 59 ++++-- man/logistic.Rd | 111 +++++++---- man/lotkaVolterra.Rd | 59 ++++-- man/monomolecular.Rd | 58 ++++-- man/morrisLecar.Rd |only man/nullclines.Rd | 174 ++++++++++++------ man/numericalSolution.Rd | 112 ++++++++--- man/phasePlaneAnalysis.Rd |only man/phasePortrait.Rd | 126 +++++++++---- man/phaseR-package.Rd | 87 +++++---- man/simplePendulum.Rd | 108 +++++++---- man/stability.Rd | 122 ++++++++---- man/toggle.Rd |only man/trajectory.Rd | 168 +++++++++++------ man/vanDerPol.Rd | 102 +++++++--- man/vonBertalanffy.Rd | 56 ++++- tests |only vignettes |only 84 files changed, 4112 insertions(+), 1846 deletions(-)
Title: A Copy Number and Expression-Based Classifier for Breast Tumours
Description: Implementation of the classifier described in the paper 'Genome-driven integrated classification of breast cancer validated in over 7,500 samples' (Ali HR et al., Genome Biology 2014). It uses copy number and/or expression form breast cancer data, trains a pamr classifier (Tibshirani et al.) with the features available and predicts the iC10 group.
Author: Oscar M Rueda
Maintainer: Oscar M. Rueda <Oscar.Rueda@cruk.cam.ac.uk>
Diff between iC10 versions 1.1.3 dated 2015-09-23 and 1.4.1 dated 2018-08-20
DESCRIPTION | 8 +- MD5 | 11 +-- NEWS | 3 R/matchFeatures.R | 157 ++++++++++++++++++++++++++++------------------------ R/plot.iC10.R | 95 +++++++++++++++++-------------- build |only man/iC10-package.Rd | 34 +++-------- 7 files changed, 163 insertions(+), 145 deletions(-)
Title: R Interface to 'FOAAS'
Description: R access to the 'FOAAS' (F... Off As A Service) web service is provided.
Author: Dirk Eddelbuettel
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between rfoaas versions 1.1.1 dated 2017-11-26 and 2.0.0 dated 2018-08-20
ChangeLog | 9 +++++++++ DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ R/foaas.R | 17 ++++++++++++----- README.md | 2 +- man/rfoaas-package.Rd | 19 +++++++++++++++++-- tests/runTestsAgainstFOAAS.R | 12 ++++++++++-- 7 files changed, 59 insertions(+), 20 deletions(-)
More information about KeyboardSimulator at CRAN
Permanent link
Title: Convert a SpatialLinesDataFrame Object to an 'igraph'-Class
Object
Description: Functions for converting network data from a
SpatialLinesDataFrame object to an 'igraph'-Class object.
Author: Binbin Lu
Maintainer: Binbin Lu <lubinbin220@gmail.com>
Diff between shp2graph versions 0-4 dated 2018-04-08 and 0-5 dated 2018-08-20
DESCRIPTION | 8 ++++---- MD5 | 3 ++- inst |only 3 files changed, 6 insertions(+), 5 deletions(-)
Title: Scoring Q-Sort Data
Description: Computes scores from Q-sort data, using criteria sorts and
derived scales from subsets of items.
The 'qsort' package includes descriptions and scoring procedures
for four different Q-sets:
Attachment Q-set (version 3.0) (Waters, 1995, <doi:10.1111/j.1540-5834.1995.tb00214.x>);
California Child Q-set (Block and Block, 1969, <doi:10.1037/0012-1649.21.3.508>);
Maternal Behaviour Q-set (version 3.1)
(Pederson et al., 1999, <https://ir.lib.uwo.ca/cgi/viewcontent.cgi?article=1000&context=psychologypub>);
Preschool Q-set (Baumrind, 1968 revised by Wanda Bronson, <doi:10.1111/j.1540-5834.1995.tb00214.x>).
Author: João R Daniel [aut, cre] (<https://orcid.org/0000-0001-6609-2014>),
David N Sousa [aut] (<https://orcid.org/0000-0001-7277-6447>)
Maintainer: João R Daniel <joaordaniel@gmail.com>
Diff between qsort versions 0.2.1 dated 2018-06-19 and 0.2.2 dated 2018-08-20
DESCRIPTION | 14 + MD5 | 26 +-- NAMESPACE | 34 ++-- NEWS.md | 59 ++++---- R/ex_qsort.R | 78 +++++----- R/print_cards.R | 154 ++++++++++----------- R/qsets.R | 216 ++++++++++++++++-------------- R/qsort_score.R | 376 ++++++++++++++++++++++++++--------------------------- README.md | 237 ++++++++++++++++----------------- data/qsets.RData |binary man/ex_qsort.Rd | 92 ++++++------ man/print_cards.Rd | 88 ++++++------ man/qsets.Rd | 230 +++++++++++++++++--------------- man/qsort_score.Rd | 148 ++++++++++---------- 14 files changed, 890 insertions(+), 862 deletions(-)
Title: Data Management and Analysis of Tests
Description: A system for the management, assessment, and psychometric analysis of data from educational and psychological tests.
Developed at Cito, The Netherlands, with subsidy from the Dutch Ministry of Education, Culture, and Science.
Author: Gunter Maris, Timo Bechger, Jesse Koops, Ivailo Partchev
Maintainer: Ivailo Partchev <partchev@gmail.com>
Diff between dexter versions 0.8.0 dated 2018-06-10 and 0.8.1 dated 2018-08-20
dexter-0.8.0/dexter/R/Rversions.R |only dexter-0.8.0/dexter/inst/doc/DIF_vignette.R |only dexter-0.8.0/dexter/inst/doc/DIF_vignette.Rmd |only dexter-0.8.0/dexter/inst/doc/DIF_vignette.html |only dexter-0.8.0/dexter/vignettes/DIF_vignette.Rmd |only dexter-0.8.1/dexter/DESCRIPTION | 10 dexter-0.8.1/dexter/MD5 | 139 ++-- dexter-0.8.1/dexter/NAMESPACE | 6 dexter-0.8.1/dexter/NEWS | 9 dexter-0.8.1/dexter/R/ability.R | 34 - dexter-0.8.1/dexter/R/anon.R | 302 ++++++---- dexter-0.8.1/dexter/R/d3c.R | 5 dexter-0.8.1/dexter/R/dexter.R | 239 ++++++- dexter-0.8.1/dexter/R/dif.R | 122 ++-- dexter-0.8.1/dexter/R/enorm.R | 195 +++++- dexter-0.8.1/dexter/R/interaction_model.R | 8 dexter-0.8.1/dexter/R/misc.R | 132 ++++ dexter-0.8.1/dexter/R/oplike.R | 37 - dexter-0.8.1/dexter/R/plausible_values.R | 11 dexter-0.8.1/dexter/R/plots.R | 29 dexter-0.8.1/dexter/R/profile_analysis.R | 23 dexter-0.8.1/dexter/R/zzz.R | 4 dexter-0.8.1/dexter/build/vignette.rds |binary dexter-0.8.1/dexter/data/verbAggrData.rda |binary dexter-0.8.1/dexter/inst/doc/Equating.html | 12 dexter-0.8.1/dexter/inst/doc/Plausible_Values.R | 24 dexter-0.8.1/dexter/inst/doc/Plausible_Values.Rmd | 26 dexter-0.8.1/dexter/inst/doc/Plausible_Values.html | 37 - dexter-0.8.1/dexter/inst/doc/Test_Individual_differences.Rmd | 2 dexter-0.8.1/dexter/inst/doc/Test_Individual_differences.html | 21 dexter-0.8.1/dexter/inst/doc/data_management.Rmd | 2 dexter-0.8.1/dexter/inst/doc/data_management.html | 10 dexter-0.8.1/dexter/inst/doc/dexter.R | 3 dexter-0.8.1/dexter/inst/doc/dexter.Rmd | 5 dexter-0.8.1/dexter/inst/doc/dexter.html | 13 dexter-0.8.1/dexter/inst/doc/profile-plots.html | 4 dexter-0.8.1/dexter/man/DIF.Rd | 10 dexter-0.8.1/dexter/man/ability.Rd | 11 dexter-0.8.1/dexter/man/add_booklet.Rd | 48 + dexter-0.8.1/dexter/man/add_item_properties.Rd | 2 dexter-0.8.1/dexter/man/add_person_properties.Rd | 3 dexter-0.8.1/dexter/man/add_test3DC.Rd | 2 dexter-0.8.1/dexter/man/design_as_network.Rd | 3 dexter-0.8.1/dexter/man/distractor_plot.Rd | 7 dexter-0.8.1/dexter/man/get_design.Rd | 6 dexter-0.8.1/dexter/man/get_responses.Rd | 4 dexter-0.8.1/dexter/man/plausible_scores.Rd | 4 dexter-0.8.1/dexter/man/plausible_values.Rd | 11 dexter-0.8.1/dexter/man/plot.DIF_stats.Rd |only dexter-0.8.1/dexter/man/plot.prms.Rd |only dexter-0.8.1/dexter/man/plot.rim.Rd | 2 dexter-0.8.1/dexter/man/profile_plot.Rd | 2 dexter-0.8.1/dexter/man/profiles.Rd | 4 dexter-0.8.1/dexter/man/start_new_project_from_oplm.Rd | 21 dexter-0.8.1/dexter/man/verbAggrData.Rd | 2 dexter-0.8.1/dexter/src/elsymean.c | 52 + dexter-0.8.1/dexter/src/packagename_init.c | 6 dexter-0.8.1/dexter/src/roger.c | 198 ++++++ dexter-0.8.1/dexter/src/roger.h | 1 dexter-0.8.1/dexter/tests/testthat.R | 1 dexter-0.8.1/dexter/tests/testthat/test_ability.R | 9 dexter-0.8.1/dexter/tests/testthat/test_data_selection.R | 5 dexter-0.8.1/dexter/tests/testthat/test_database.R | 8 dexter-0.8.1/dexter/tests/testthat/test_enorm.R | 5 dexter-0.8.1/dexter/tests/testthat/test_interaction.R | 2 dexter-0.8.1/dexter/tests/testthat/test_oplike.r | 12 dexter-0.8.1/dexter/tests/testthat/test_plausible_scores.R | 4 dexter-0.8.1/dexter/tests/testthat/test_plausible_values.R | 4 dexter-0.8.1/dexter/tests/testthat/test_profiles.R | 10 dexter-0.8.1/dexter/vignettes/Plausible_Values.Rmd | 26 dexter-0.8.1/dexter/vignettes/Test_Individual_differences.Rmd | 2 dexter-0.8.1/dexter/vignettes/data_management.Rmd | 2 dexter-0.8.1/dexter/vignettes/dexter.Rmd | 5 dexter-0.8.1/dexter/vignettes/dexter.bib | 12 74 files changed, 1464 insertions(+), 506 deletions(-)
Title: Geographically-Weighted Models
Description: In GWmodel, we introduce techniques from a particular branch of spatial statistics,termed geographically-weighted (GW) models. GW models suit situations when data are not described well by some global model, but where there are spatial regions where a suitably localised calibration provides a better description. GWmodel includes functions to calibrate: GW summary statistics, GW principal components analysis, GW discriminant analysis and various forms of GW regression; some of which are provided in basic and robust (outlier resistant) forms.
Author: Binbin Lu[aut], Paul Harris[aut], Martin Charlton[aut], Chris Brunsdon[aut], Tomoki Nakaya[aut], Isabella Gollini[ctb]
Maintainer: Binbin Lu <binbinlu@whu.edu.cn>
Diff between GWmodel versions 2.0-5 dated 2017-12-19 and 2.0-6 dated 2018-08-20
GWmodel-2.0-5/GWmodel/man/gwr.psdm.rd |only GWmodel-2.0-6/GWmodel/DESCRIPTION | 10 GWmodel-2.0-6/GWmodel/MD5 | 20 + GWmodel-2.0-6/GWmodel/NAMESPACE | 7 GWmodel-2.0-6/GWmodel/R/bw.gtwr.R |only GWmodel-2.0-6/GWmodel/R/gtwr.R |only GWmodel-2.0-6/GWmodel/R/gwpca.r | 149 +++++++++++++- GWmodel-2.0-6/GWmodel/R/gwr.psdm.r | 291 ++++++++++++++++++++++++++-- GWmodel-2.0-6/GWmodel/R/zzz.r | 2 GWmodel-2.0-6/GWmodel/man/bw.gtwr.Rd |only GWmodel-2.0-6/GWmodel/man/gtwr.Rd |only GWmodel-2.0-6/GWmodel/man/gwpca.rd | 19 + GWmodel-2.0-6/GWmodel/man/gwr.basic.rd | 2 GWmodel-2.0-6/GWmodel/man/gwr.multiscale.rd |only 14 files changed, 452 insertions(+), 48 deletions(-)
Title: Tidy Temporal Data Frames and Tools
Description: Provides a 'tbl_ts' class (the 'tsibble') to store and manage
temporal-context data in a data-centric format, which is built on top of
the 'tibble'. The 'tsibble' aims at easily manipulating and analysing temporal
data, including counting and filling time gaps, aggregate over calendar periods,
performing rolling window calculations, and etc.
Author: Earo Wang [aut, cre] (<https://orcid.org/0000-0001-6448-5260>),
Di Cook [aut, ths] (<https://orcid.org/0000-0002-3813-7155>),
Rob Hyndman [aut, ths] (<https://orcid.org/0000-0002-2140-5352>),
Mitchell O'Hara-Wild [ctb]
Maintainer: Earo Wang <earo.wang@gmail.com>
Diff between tsibble versions 0.5.0 dated 2018-08-05 and 0.5.1 dated 2018-08-20
DESCRIPTION | 25 ++++-- MD5 | 117 ++++++++++++++++---------------- NAMESPACE | 13 +-- NEWS.md | 29 +++++++ R/as-tsibble.R | 92 +++++++++++++++++-------- R/dplyr-join.R | 2 R/dplyr-verbs.R | 28 ++++--- R/fill-na.R | 97 ++++++++++---------------- R/format.R | 22 +----- R/holiday.R | 1 R/index-by.R | 49 +++++-------- R/interval.R | 67 +++++++++++++----- R/parse-key.R | 142 +++++++++++++++++++++------------------ R/period.R | 31 +++----- R/reexports.R | 16 +--- R/slide.R | 63 ++++++++++++----- R/stretch.R | 15 +++- R/subset.R | 7 + R/tidyr-verbs.R | 28 +++---- R/tile.R | 46 ++++++------ R/ts2tsibble.R | 8 +- R/tsibble2ts.R | 13 +-- R/utils.R | 19 ++--- R/zzz.R |only README.md | 19 ++--- data/pedestrian.rda |binary data/tourism.rda |binary inst/doc/intro-tsibble.html | 12 +-- inst/doc/window.R | 4 - inst/doc/window.Rmd | 6 + inst/doc/window.html | 9 +- man/as-tibble.Rd | 21 +++++ man/as-tsibble.Rd | 2 man/build_tsibble.Rd | 8 +- man/fill-na.Rd | 14 +-- man/holiday_aus.Rd | 3 man/new_interval.Rd |only man/reexports.Rd | 5 - man/slide.Rd | 6 + man/slide2.Rd | 25 ++++++ man/stretch.Rd | 3 man/stretch2.Rd | 14 +++ man/stretcher.Rd | 3 man/tidyverse.Rd | 84 ++++++++++------------- man/tile.Rd | 9 +- man/tile2.Rd | 15 ++-- man/tiler.Rd | 7 + src/RcppExports.cpp | 2 src/utils.cpp | 6 - tests/testthat/test-dplyr.R | 43 +++++++++++ tests/testthat/test-fill-na.R | 6 + tests/testthat/test-indexby.R | 1 tests/testthat/test-misc.R | 79 +++------------------ tests/testthat/test-pillar.R |only tests/testthat/test-slide.R | 5 + tests/testthat/test-subset.R | 1 tests/testthat/test-tidyr.R | 16 ++++ tests/testthat/test-tile.R | 5 + tests/testthat/test-ts2tsibble.R | 4 - tests/testthat/test-tsibble.R | 20 ++++- vignettes/window.Rmd | 6 + 61 files changed, 802 insertions(+), 591 deletions(-)
Title: Displays User Feedback Next to Shiny Inputs
Description: Easily display user feedback next to Shiny inputs. The feedback message is displayed when the feedback condition evaluates to TRUE.
Author: Andy Merlino [aut, cre]
Maintainer: Andy Merlino <merlinoa88@gmail.com>
Diff between shinyFeedback versions 0.0.4 dated 2018-03-15 and 0.1.0 dated 2018-08-20
DESCRIPTION | 10 ++-- MD5 | 40 ++++++++++------ NAMESPACE | 5 ++ NEWS.md | 5 ++ R/feedback.R | 4 - R/snackbar-wrappers.R |only R/snackbar.R |only R/useShinyFeedback.R | 9 +++ README.md | 20 +++++++- build/vignette.rds |binary inst/css |only inst/doc/shinyFeedback-intro.R | 76 +++++++++++++++++++++++++++++++ inst/doc/shinyFeedback-intro.Rmd | 85 +++++++++++++++++++++++++++++++++++ inst/doc/shinyFeedback-intro.html | 91 ++++++++++++++++++++++++++++++++++---- inst/img/snackbar_gif.gif |only inst/srcjs/checkFeedback.js | 20 +++++++- inst/srcjs/snackbar.js |only man/feedbackDanger.Rd | 1 man/feedbackSuccess.Rd | 1 man/feedbackWarning.Rd | 4 + man/showSnackbar.Rd |only man/snackbar.Rd |only man/snackbarDanger.Rd |only man/snackbarSuccess.Rd |only man/snackbarWarning.Rd |only vignettes/shinyFeedback-intro.Rmd | 85 +++++++++++++++++++++++++++++++++++ 26 files changed, 419 insertions(+), 37 deletions(-)
Title: Miscellaneous R Functions and Aliases
Description: Provides utility functions for, and drawing on, the 'data.table' package. The package also collates useful miscellaneous functions extending base R not available elsewhere. The name is a portmanteau of 'utils' and the author.
Author: Hugh Parsonage [aut, cre],
Michael Frasco [ctb],
Ben Hamner [ctb]
Maintainer: Hugh Parsonage <hugh.parsonage@gmail.com>
Diff between hutils versions 1.1.0 dated 2018-05-12 and 1.2.0 dated 2018-08-20
DESCRIPTION | 10 MD5 | 77 ++- NAMESPACE | 11 NEWS.md | 122 +++--- R/RQ.R |only R/Switch.R |only R/aliases.R | 95 ++-- R/all_same_sign.R |only R/any_grepl.R |only R/auc.R | 2 R/drop_colr.R | 44 +- R/find_pattern.R | 281 ++++++++------ R/hull.R |only R/hutils-package.R | 1 R/if_else.R | 34 - R/isAttached.R |only R/mean_na.R |only R/select_grep.R | 582 +++++++++++++++--------------- R/selector.R |only build/vignette.rds |binary inst/doc/hutils.R | 71 +++ inst/doc/hutils.Rmd | 104 +++++ inst/doc/hutils.html | 154 ++++++- man/RQ.Rd |only man/Switch.Rd |only man/ahull.Rd |only man/aliases.Rd | 3 man/all_same_sign.Rd |only man/any_grepl.Rd |only man/drop_colr.Rd | 12 man/find_pattern_in.Rd | 13 man/isAttached.Rd |only man/mean_na.Rd |only man/select_grep.Rd | 4 man/selector.Rd |only tests/testthat/test-1-2-0_any_grepl.R |only tests/testthat/test-1-2-0_drop_grep.R |only tests/testthat/test-ahull.R |only tests/testthat/test-auc.R | 2 tests/testthat/test-select_grep.R | 239 ++++++------ tests/testthat/test-switch.R |only tests/testthat/test_1-0-0_if_else.R | 451 +++++++++++------------ tests/testthat/test_1-0-0_mutate_other.R | 3 tests/testthat/test_1-2-0-weight2rows.R |only tests/testthat/test_1-2-0_RQ.R |only tests/testthat/test_1-2-0_aliases.R |only tests/testthat/test_1-2-0_all_same_sign.R |only tests/testthat/test_1-2-0_if_else.R |only tests/testthat/test_1-2-0_mean_na.R |only tests/testthat/test_1-2-0_selector.R |only tests/testthat/test_benchmarks.R | 34 + tests/testthat/test_find_pattern_in.R | 307 +++++++++------ vignettes/hutils.Rmd | 104 +++++ 53 files changed, 1698 insertions(+), 1062 deletions(-)