Title: Generalized Synthetic Control Method
Description: Provides causal inference with interactive fixed-effect models. It imputes counterfactuals for each treated unit using control group information based on a linear interactive fixed effects model that incorporates unit-specific intercepts interacted with time-varying coefficients. This method generalizes the synthetic control method to the case of multiple treated units and variable treatment periods, and improves efficiency and interpretability. This version supports unbalanced panels and implements the matrix completion method. Main reference: Yiqing Xu (2017) <doi:10.1017/pan.2016.2>.
Author: Yiqing Xu, Licheng Liu
Maintainer: Yiqing Xu <yiqingxu@ucsd.edu>
Diff between gsynth versions 1.0.6 dated 2017-10-16 and 1.0.9 dated 2018-08-24
DESCRIPTION | 12 MD5 | 30 NAMESPACE | 9 R/RcppExports.R | 64 R/gsynth.R | 3308 ++++++++++++++++++++++++++++++++++--------------- R/interFE.R | 113 + README.md | 12 data/gsynth.RData |binary man/gsynth-internal.Rd | 25 man/gsynth.Rd | 93 - man/interFE.Rd | 11 man/plot.gsynth.Rd | 17 src/Makevars | 4 src/Makevars.win | 4 src/RcppExports.cpp | 165 ++ src/interFE.cpp | 1269 +++++++++++++----- 16 files changed, 3650 insertions(+), 1486 deletions(-)
Title: Quick Generalized Full Matching
Description: Provides functions for constructing near-optimal generalized full matching.
Generalized full matching is an extension of the original full matching method
to situations with more intricate study designs. The package is made with
large data sets in mind and derives matches more than an order of magnitude
quicker than other methods.
Author: Fredrik Savje [aut, cre],
Jasjeet Sekhon [aut],
Michael Higgins [aut]
Maintainer: Fredrik Savje <fredrik.savje@yale.edu>
Diff between quickmatch versions 0.2.0 dated 2018-08-21 and 0.2.1 dated 2018-08-24
DESCRIPTION | 10 +++++----- MD5 | 6 +++--- NEWS.md | 5 +++++ tests/testthat/test_quickmatch.R | 6 +++--- 4 files changed, 16 insertions(+), 11 deletions(-)
Title: Printing Floating Point Numbers in a Human-Friendly Format
Description: Print vectors (and data frames) of floating point numbers
using a non-scientific format optimized for human readers. Vectors
of numbers are rounded using significant digits, aligned at the
decimal point, and all zeros trailing the decimal point are dropped.
See: Wright (2016). Lucid: An R Package for Pretty-Printing Floating Point
Numbers. In JSM Proceedings, Statistical Computing Section. Alexandria,
VA: American Statistical Association. 2270-2279.
Author: Kevin Wright [aut, cre] (<https://orcid.org/0000-0002-0617-8673>)
Maintainer: Kevin Wright <kw.stat@gmail.com>
Diff between lucid versions 1.4 dated 2016-10-24 and 1.6 dated 2018-08-24
lucid-1.4/lucid/R/lucid.r |only lucid-1.4/lucid/R/vc.r |only lucid-1.4/lucid/inst/doc/lucid_printing.R |only lucid-1.4/lucid/inst/doc/lucid_printing.Rmd |only lucid-1.4/lucid/inst/doc/lucid_printing.html |only lucid-1.4/lucid/tests/testthat/test_lucid.r |only lucid-1.4/lucid/tests/testthat/test_vc.r |only lucid-1.4/lucid/vignettes/lucid_printing.Rmd |only lucid-1.6/lucid/DESCRIPTION | 21 ++++++++++------- lucid-1.6/lucid/MD5 | 32 +++++++++++++-------------- lucid-1.6/lucid/NAMESPACE | 1 lucid-1.6/lucid/R/antibiotic.R | 6 ++--- lucid-1.6/lucid/R/lucid.R |only lucid-1.6/lucid/R/vc.R |only lucid-1.6/lucid/build/vignette.rds |binary lucid-1.6/lucid/inst/doc/lucid_examples.R |only lucid-1.6/lucid/inst/doc/lucid_examples.Rmd |only lucid-1.6/lucid/inst/doc/lucid_examples.html |only lucid-1.6/lucid/man/antibiotic.Rd | 7 ++--- lucid-1.6/lucid/man/lucid.Rd | 12 +++++----- lucid-1.6/lucid/man/vc.Rd | 7 ++--- lucid-1.6/lucid/tests/testthat/test_lucid.R |only lucid-1.6/lucid/tests/testthat/test_vc.R |only lucid-1.6/lucid/vignettes/lucid.bib | 10 +++++++- lucid-1.6/lucid/vignettes/lucid_examples.Rmd |only 25 files changed, 55 insertions(+), 41 deletions(-)
Title: Extra Themes, Scales and Geoms for 'ggplot2'
Description: Some extra themes, geoms, and scales for 'ggplot2'.
Provides 'ggplot2' themes and scales that replicate the look of plots
by Edward Tufte, Stephen Few, 'Fivethirtyeight', 'The Economist', 'Stata',
'Excel', and 'The Wall Street Journal', among others.
Provides 'geoms' for Tufte's box plot and range frame.
Author: Jeffrey B. Arnold [aut, cre] (<https://orcid.org/0000-0001-9953-3904>),
Gergely Daroczi [ctb],
Bo Werth [ctb],
Brian Weitzner [ctb],
Joshua Kunst [ctb],
Baptise Auguie [ctb],
Bob Rudis [ctb],
Hadley Wickham [ctb] (Code from the ggplot2 package.),
Justin Talbot [ctb] (Code from the labeling package),
Joshua London [ctb]
Maintainer: Jeffrey B. Arnold <jeffrey.arnold@gmail.com>
Diff between ggthemes versions 4.0.0 dated 2018-07-19 and 4.0.1 dated 2018-08-24
DESCRIPTION | 14 +- MD5 | 169 ++++++++++++++-------------- NEWS.md | 208 ++++++++++++++++++++++------------- R/banking.R | 4 R/base.R | 4 R/calc.R | 6 - R/canva.R | 10 + R/colorblind.R | 4 R/economist.R | 9 - R/excel.R | 4 R/few.R | 10 - R/fivethirtyeight.R | 2 R/gdocs.R | 2 R/geom-tufteboxplot.R | 2 R/hc.R | 4 R/igray.R | 9 - R/pander.R | 2 R/ptol.R | 2 R/scales.R | 12 +- R/shapes.R | 12 +- R/show.R | 8 - R/solarized.R | 15 +- R/stat-fivenumber.R | 2 R/stata.R | 10 - R/tableau.R | 4 R/theme-foundation.R | 16 +- R/theme-map.R | 3 R/theme-solid.R | 2 R/tufte.R | 4 R/wsj.R | 6 - build/ggthemes.pdf |binary data/ggthemes_data.rda |binary inst/examples/ex-canva_pal.R | 1 man/bank_slopes.Rd | 8 - man/canva_pal.Rd | 6 - man/canva_palettes.Rd | 1 man/cleveland_shape_pal.Rd | 2 man/colorblind.Rd | 12 +- man/geom_rangeframe.Rd | 4 man/geom_tufteboxplot.Rd | 11 + man/range_breaks.Rd | 2 man/scale_calc.Rd | 10 - man/scale_color_tableau.Rd | 10 - man/scale_colour_canva.Rd | 8 - man/scale_colour_gradient_tableau.Rd | 16 +- man/scale_economist.Rd | 10 - man/scale_excel.Rd | 8 - man/scale_excel_new.Rd | 8 - man/scale_few.Rd | 10 - man/scale_fivethirtyeight.Rd | 10 - man/scale_gdocs.Rd | 10 - man/scale_hc.Rd | 12 +- man/scale_linetype_stata.Rd | 10 - man/scale_pander.Rd | 10 - man/scale_ptol.Rd | 10 - man/scale_shape_calc.Rd | 12 +- man/scale_shape_circlefill.Rd | 10 - man/scale_shape_cleveland.Rd | 14 +- man/scale_shape_few.Rd | 7 - man/scale_shape_stata.Rd | 10 - man/scale_shape_tableau.Rd | 10 - man/scale_shape_tremmel.Rd | 10 - man/scale_solarized.Rd | 10 - man/scale_stata.Rd | 10 - man/scale_wsj.Rd | 12 +- man/show_linetypes.Rd | 4 man/show_shapes.Rd | 4 man/smart_digits.Rd | 10 + man/stat_fivenumber.Rd | 10 - man/stata_linetype_pal.Rd | 2 man/stata_shape_pal.Rd | 2 man/theme_economist.Rd | 12 -- man/theme_excel.Rd | 2 man/theme_excel_new.Rd | 2 man/theme_foundation.Rd | 16 +- man/theme_igray.Rd | 9 - man/theme_map.Rd | 3 man/theme_par.Rd | 4 man/theme_solarized.Rd | 4 man/theme_solid.Rd | 2 man/theme_tufte.Rd | 4 man/theme_wsj.Rd | 2 tests/figs/deps.txt | 2 tests/figs/few |only tests/testthat/helper-utils.R | 11 - tests/testthat/test-tableau.R | 7 + 86 files changed, 518 insertions(+), 447 deletions(-)
Title: Compute, Handle, Plot and Model Incidence of Dated Events
Description: Provides functions and classes to compute, handle and visualise incidence from dated events for a defined time interval. Dates can be provided in various standard formats. The class 'incidence' is used to store computed incidence and can be easily manipulated, subsetted, and plotted. In addition, log-linear models can be fitted to 'incidence' objects using 'fit'. This package is part of the RECON (<http://www.repidemicsconsortium.org/>) toolkit for outbreak analysis.
Author: Thibaut Jombart [aut],
Zhian N. Kamvar [aut, cre],
Rich FitzJohn [aut],
Jun Cai [ctb],
Sangeeta Bhatia [ctb]
Maintainer: Zhian N. Kamvar <zkamvar@gmail.com>
Diff between incidence versions 1.3.1 dated 2018-06-11 and 1.4.1 dated 2018-08-24
DESCRIPTION | 25 MD5 | 128 ++- NAMESPACE | 18 NEWS.md | 70 ++ R/bootstrap.R |only R/check_dots.R |only R/conversion.R | 34 - R/cumulate.R | 12 R/estimate_peak.R |only R/extract_info.R |only R/find_peak.R |only R/fit.R | 409 ++---------- R/fit_optim_split.R |only R/get_counts.R |only R/get_dates.R |only R/get_fit.R |only R/get_info.R |only R/get_interval.R |only R/incidence.R | 531 +++++++--------- R/internal_checks.R |only R/internals.R | 343 ++++++---- R/plot.R | 219 ++++-- R/pool.R | 8 R/print.R |only R/subset.R | 51 + build/vignette.rds |binary demo |only inst/doc/conversions.R | 3 inst/doc/conversions.Rmd | 3 inst/doc/conversions.html | 650 +++++++++++++------- inst/doc/customize_plot.R | 3 inst/doc/customize_plot.Rmd | 3 inst/doc/customize_plot.html | 512 +++++++++++---- inst/doc/incidence_class.R | 3 inst/doc/incidence_class.Rmd | 3 inst/doc/incidence_class.html | 824 +++++++++++++++---------- inst/doc/incidence_fit_class.R |only inst/doc/incidence_fit_class.Rmd |only inst/doc/incidence_fit_class.html |only inst/doc/overview.R | 25 inst/doc/overview.Rmd | 101 ++- inst/doc/overview.html | 1099 +++++++++++++++++++++------------- man/bootstrap.Rd |only man/conversions.Rd | 14 man/cumulate.Rd | 2 man/estimate_peak.Rd |only man/find_peak.Rd |only man/fit.Rd | 107 +-- man/get_counts.Rd |only man/get_dates.Rd |only man/get_fit.Rd |only man/get_interval.Rd |only man/incidence.Rd | 133 ++-- man/palettes.Rd | 2 man/plot.incidence.Rd | 46 - man/pool.Rd | 4 man/subset.Rd | 12 tests/testthat/rds/fit.i.rds |binary tests/testthat/rds/fit.i.sex.rds |binary tests/testthat/rds/incidence.res4.rds |binary tests/testthat/rds/incidence.res8.rds |binary tests/testthat/rds/o.fit.i.rds |binary tests/testthat/rds/o.fit.i.sex.rds |binary tests/testthat/rds/print.fit.i.rds |binary tests/testthat/rds/print.fit.sex.rds |binary tests/testthat/test-accessors.R |only tests/testthat/test-bootstrap.R |only tests/testthat/test-conversions.R | 10 tests/testthat/test-fit.R | 19 tests/testthat/test-incidence.R | 109 +++ tests/testthat/test-non-exported.R | 4 tests/testthat/test-plot.R | 35 - tests/testthat/test-subset.R | 24 vignettes/conversions.Rmd | 3 vignettes/customize_plot.Rmd | 3 vignettes/incidence_class.Rmd | 3 vignettes/incidence_fit_class.Rmd |only vignettes/overview.Rmd | 101 ++- 78 files changed, 3462 insertions(+), 2246 deletions(-)
Title: Verbal Autopsy Data Transform for Use with Various Coding
Algorithms
Description: Enables transformation of Verbal Autopsy data collected with the WHO 2016 questionnaire (Revision 1.4.1) for automated coding of Cause of Death using different computer algorithms. Currently supports user-supplied mappings, and provides unvalidated, experimental-stage mapping definitions to transform to InterVA4, Tariff 2, and InSilicoVA.
This package is made available by WHO, in collaboration with Swiss Tropical and Public Health Institute.
Author: Nicolas Maire <nma.swisstph@gmail.com> [aut], Jason Thomas [cre], Eungang Choi, Zehang Li, Sam Clark,
Maintainer: Jason Thomas <jarathomas@gmail.com>
Diff between CrossVA versions 0.9.1 dated 2017-09-04 and 0.9.2 dated 2018-08-24
DESCRIPTION | 13 MD5 | 11 NAMESPACE | 2 R/map_records.R | 777 ++++++++++++++++++++++++++++++++++++ inst/mapping/insilicova_mapping.txt | 8 inst/mapping/interva4_mapping.txt | 8 man/odk2openVA.Rd |only 7 files changed, 799 insertions(+), 20 deletions(-)
Title: A Suite of Packages for Analysis of Big Genomic Data
Description: An umbrella package providing a phenotype/genotype data structure
and scalable and efficient computational methods for large genomic datasets
in combination with several other packages: 'BEDMatrix', 'LinkedMatrix',
and 'symDMatrix'.
Author: Gustavo de los Campos [aut],
Alexander Grueneberg [aut, cre],
Paulino Perez [ctb],
Ana Vazquez [ctb]
Maintainer: Alexander Grueneberg <alexander.grueneberg@googlemail.com>
Diff between BGData versions 1.0.0 dated 2017-05-11 and 2.0.0 dated 2018-08-24
BGData-1.0.0/BGData/man/crossprod_parallel.Rd |only BGData-2.0.0/BGData/DESCRIPTION | 17 BGData-2.0.0/BGData/MD5 | 42 - BGData-2.0.0/BGData/NAMESPACE | 6 BGData-2.0.0/BGData/NEWS.md |only BGData-2.0.0/BGData/R/BGData.R | 55 - BGData-2.0.0/BGData/R/GWAS.R |only BGData-2.0.0/BGData/R/chunkedApply.R |only BGData-2.0.0/BGData/R/findRelated.R |only BGData-2.0.0/BGData/R/getG.R |only BGData-2.0.0/BGData/R/package.R | 52 - BGData-2.0.0/BGData/R/summarize.R |only BGData-2.0.0/BGData/R/utils.R | 855 ----------------------- BGData-2.0.0/BGData/README.md | 169 ++-- BGData-2.0.0/BGData/man/BGData-package.Rd | 55 - BGData-2.0.0/BGData/man/GWAS.Rd | 54 - BGData-2.0.0/BGData/man/as.BGData.Rd | 13 BGData-2.0.0/BGData/man/chunkedApply.Rd | 78 -- BGData-2.0.0/BGData/man/examples/findRelated.R |only BGData-2.0.0/BGData/man/findRelated.Rd |only BGData-2.0.0/BGData/man/getG.Rd | 53 - BGData-2.0.0/BGData/man/getG_symDMatrix.Rd | 45 - BGData-2.0.0/BGData/man/orderedMerge.Rd |only BGData-2.0.0/BGData/man/readRAW.Rd | 24 BGData-2.0.0/BGData/man/summarize.Rd | 53 - BGData-2.0.0/BGData/tests/testthat/test-BGData.R | 6 BGData-2.0.0/BGData/tests/testthat/test-utils.R | 252 ++---- 27 files changed, 462 insertions(+), 1367 deletions(-)
Title: Bayesian Classification and Information Sharing (BaCIS) Tool for
the Design of Multi-Group Phase II Clinical Trials
Description: Provides the design of multi-group phase
II clinical trials with binary outcomes using the hierarchical Bayesian
classification and information sharing (BaCIS) model. Subgroups are classified
into two clusters on the basis of their outcomes mimicking the hypothesis
testing framework. Subsequently, information sharing takes place within
subgroups in the same cluster, rather than across all subgroups. This method can
be applied to the design and analysis of multi-group clinical trials with binary
outcomes.
Author: Nan Chen and J. Jack Lee
Maintainer: Nan Chen <nchen2@mdanderson.org>
Diff between bacistool versions 0.9.6 dated 2018-08-09 and 0.9.8 dated 2018-08-24
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- R/bacisClassification.R | 2 +- R/internal.R | 6 +++--- man/bacisOneTrial.Rd | 2 +- man/bacisSubgroupPosterior.Rd | 2 +- 6 files changed, 14 insertions(+), 14 deletions(-)
Title: Fast Generators and Iterators for Permutations, Combinations and
Partitions
Description: Fast generators and iterators for permutations, combinations
and partitions. The iterators allow users to generate arrangements in
a memory efficient manner and the generated arrangements are in
lexicographical (dictionary) order. Permutations and combinations can
be drawn with/without replacement and support multisets. It has been
demonstrated that 'arrangements' outperforms most of the existing
packages of similar kind. Some benchmarks could be found at
<https://randy3k.github.io/arrangements/articles/benchmark.html>.
Author: Randy Lai [aut, cre]
Maintainer: Randy Lai <randy.cs.lai@gmail.com>
Diff between arrangements versions 1.1.1 dated 2018-08-22 and 1.1.2 dated 2018-08-24
DESCRIPTION | 8 ++++---- MD5 | 28 ++++++++++++++-------------- src/combinations/multiset_combinations.h | 4 ++-- src/combinations/ordinary_combinations.h | 2 +- src/combinations/replacement_combinations.h | 2 +- src/combinatorics.h | 4 ++-- src/combinatorics/partition.h | 10 +++++----- src/partitions/k_partitions.h | 4 ++-- src/partitions/partitions.h | 16 ++++++++-------- src/permutations/k_permutations.h | 4 ++-- src/permutations/multiset_permutations.h | 2 +- src/permutations/ordinary_permutations.h | 2 +- src/permutations/replacement_permutations.h | 2 +- src/utils.c | 2 +- src/utils.h | 2 +- 15 files changed, 46 insertions(+), 46 deletions(-)
Title: Word Clouds
Description: Functionality to create pretty word clouds, visualize differences and similarity between documents, and avoid over-plotting in scatter plots with text.
Author: Ian Fellows
Maintainer: Ian Fellows <ian@fellstat.com>
Diff between wordcloud versions 2.5 dated 2014-06-12 and 2.6 dated 2018-08-24
wordcloud-2.5/wordcloud/LICENSE.note |only wordcloud-2.6/wordcloud/DESCRIPTION | 14 wordcloud-2.6/wordcloud/MD5 | 18 wordcloud-2.6/wordcloud/NAMESPACE | 13 wordcloud-2.6/wordcloud/NEWS | 37 - wordcloud-2.6/wordcloud/R/RcppExports.R |only wordcloud-2.6/wordcloud/R/cloud.R | 812 +++++++++++++----------- wordcloud-2.6/wordcloud/README.md |only wordcloud-2.6/wordcloud/man/comparison.cloud.Rd | 23 wordcloud-2.6/wordcloud/src/Makevars.win | 8 wordcloud-2.6/wordcloud/src/RcppExports.cpp |only wordcloud-2.6/wordcloud/src/layout.cpp | 6 12 files changed, 522 insertions(+), 409 deletions(-)
Title: Partitioned Symmetric Matrices
Description: A matrix-like class to represent a symmetric matrix partitioned
into file-backed blocks.
Author: Gustavo de los Campos [aut],
Alexander Grueneberg [aut, cre]
Maintainer: Alexander Grueneberg <alexander.grueneberg@googlemail.com>
Diff between symDMatrix versions 2.0.0 dated 2018-08-07 and 2.0.1 dated 2018-08-24
DESCRIPTION | 6 +++--- MD5 | 16 ++++++++-------- NEWS.md | 6 ++++++ R/package.R | 3 ++- R/symDMatrix.R | 9 +++++---- README.md | 1 + man/load.symDMatrix.Rd | 4 +++- man/symDMatrix-package.Rd | 3 ++- tests/testthat/test-symDMatrix.R | 2 +- 9 files changed, 31 insertions(+), 19 deletions(-)
Title: Nested Association Mapping
Description: Designed for association studies in nested association mapping (NAM) panels, experimental and random panels. The method is described by Xavier et al. (2015) <doi:10.1093/bioinformatics/btv448>. It includes tools for genome-wide associations of multiple populations, marker quality control, population genetics analysis, genome-wide prediction, solving mixed models and finding variance components through likelihood and Bayesian methods.
Author: Alencar Xavier, William Muir, Katy Rainey, Shizhong Xu.
Maintainer: Alencar Xavier <alenxav@gmail.com>
Diff between NAM versions 1.6.1 dated 2018-06-28 and 1.6.2 dated 2018-08-24
DESCRIPTION | 8 +-- MD5 | 29 +++++++------ R/RcppExports.R | 4 + R/gibbs.R | 83 +++++++++++++++++++-------------------- R/reml.R | 90 ++++++++++++++++++++----------------------- README.md |only inst/add/cvNAM.R | 9 ++-- inst/doc/gwa_description.pdf |binary inst/doc/vignette1.Rmd | 4 + inst/doc/vignette1.html | 8 ++- inst/doc/vignette2.html | 4 - man/Internals.Rd | 5 +- man/NAM-package.Rd | 4 - src/Functions.cpp | 61 ++++++++++++++++++++++++++++- src/RcppExports.cpp | 14 ++++++ vignettes/vignette1.Rmd | 4 + 16 files changed, 207 insertions(+), 120 deletions(-)
Title: 'BMRB' File Downloader
Description: Nuclear magnetic resonance (NMR) is a highly versatile analytical technique for studying molecular configuration, conformation,
and dynamics, especially those of biomacromolecules such as proteins. Biological Magnetic Resonance Data Bank ('BMRB') is a repository
for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules. Currently, 'BMRB' offers an R package
'RBMRB' to fetch data, however, it doesn't easily offer individual data file downloading and storing in a local directory. When using
'RBMRB', the data will stored as an R object, which fundamentally hinders the NMR researches to access the rich information from raw
data, for example, the metadata. Here, 'BMRBr' File Downloader ('BMRBr') offers a more fundamental, low level downloader, which will
download original deposited .str format file. This type of file contains information such as entry title, authors, citation, protein
sequences, and so on.
Many factors affect NMR experiment outputs, such as temperature, resonance sensitivity and etc., approximately 40% of the entries in the 'BMRB' have
chemical shift accuracy problems [1,2] Unfortunately, current reference correction methods are heavily dependent on the availability of
assigned protein chemical shifts or protein structure. This is my current research project is going to solve, which will be included
in the future release of the package. The current version of the package is sufficient and robust enough for downloading individual
'BMRB' data file from the 'BMRB' database <http://www.bmrb.wisc.edu>. The functionalities of this package includes but not limited:
* To simplifies NMR researches by combine data downloading and results analysis together.
* To allows NMR data reaches a broader audience that could utilize more than just chemical shifts but also metadata.
* To offer reference corrected data for entries without assignment or structure information (future release).
Reference:
[1] E.L. Ulrich, H. Akutsu, J.F. Doreleijers, Y. Harano, Y.E. Ioannidis, J. Lin, et al., BioMagResBank, Nucl. Acids Res. 36 (2008) D402–8. <doi:10.1093/nar/gkm957>.
[2] L. Wang, H.R. Eghbalnia, A. Bahrami, J.L. Markley, Linear analysis of carbon-13 chemical shift differences and its application to the detection and correction of errors in referencing and spin system identifications, J. Biomol. NMR. 32 (2005) 13–22. <doi:10.1007/s10858-005-1717-0>.
Author: Xi Chen [aut, cre] (<https://orcid.org/0000-0001-7094-6748>)
Maintainer: Xi Chen <billchenxi@gmail.com>
Diff between BMRBr versions 0.1.0 dated 2018-01-17 and 0.2.0 dated 2018-08-24
DESCRIPTION | 10 - MD5 | 10 - R/bmrb_download.R | 9 - R/collect_ids.R | 2 build/vignette.rds |binary inst/doc/vignette.html | 298 +++++++++++++++++++++++++++++++++++++++++-------- 6 files changed, 269 insertions(+), 60 deletions(-)
More information about portfolio.optimization at CRAN
Permanent link
Title: Estimate Percentiles from an Ordered Categorical Variable
Description: An implementation of two functions that estimate values for percentiles from an ordered categorical variable as described by Reardon (2011, isbn:978-0-87154-372-1). One function estimates percentile differences from two percentiles while the other returns the values for every percentile from 1 to 100.
Author: Jorge Cimentada [aut, cre]
Maintainer: Jorge Cimentada <cimentadaj@gmail.com>
Diff between perccalc versions 1.0.2 dated 2018-07-18 and 1.0.3 dated 2018-08-24
DESCRIPTION | 8 - MD5 | 22 ++-- NEWS.md | 6 + inst/doc/perc_calculator_example.R | 78 +++++++---------- inst/doc/perc_calculator_example.Rmd | 84 ++++++++----------- inst/doc/perc_calculator_example.html | 150 ++++++++++++++++------------------ inst/doc/perc_warning_example.R | 1 inst/doc/perc_warning_example.Rmd | 1 inst/doc/perc_warning_example.html | 4 tests/testthat/test-perc_funs.R | 20 ++++ vignettes/perc_calculator_example.Rmd | 84 ++++++++----------- vignettes/perc_warning_example.Rmd | 1 12 files changed, 225 insertions(+), 234 deletions(-)
Title: Estimate Gaussian Mixture Vector Autoregressive Model
Description: Maximum likelihood estimation of Gaussian Mixture Vector Autoregressive (GMVAR)
model, quantile residual tests, graphical diagnostics, forecasting and simulations. Applying
general linear constraints to the autoregressive parameters is supported.
Leena Kalliovirta, Mika Meitz, Pentti Saikkonen (2016) <doi:10.1016/j.jeconom.2016.02.012>.
Author: Savi Virolainen [aut, cre]
Maintainer: Savi Virolainen <savi.virolainen@helsinki.fi>
Diff between gmvarkit versions 1.0.1 dated 2018-08-13 and 1.0.2 dated 2018-08-24
DESCRIPTION | 6 MD5 | 24 - R/GMVARconstruction.R | 502 ++++++++++++++++++++-------------------- R/geneticAlgorithm.R | 10 R/gmvarkit.R | 22 - R/standardErrors.R | 312 ++++++++++++------------ inst/doc/intro-to-gmvarkit.html | 4 man/GAfit.Rd | 2 man/aa_gmvarkit.Rd | 2 man/add_data.Rd | 2 man/random_ind.Rd | 2 man/random_ind2.Rd | 2 man/smart_ind.Rd | 2 13 files changed, 446 insertions(+), 446 deletions(-)
Title: Dose Response Data Analysis using the 4 Parameter Logistic (4pl)
Model
Description: Models the relationship between dose levels and responses in a pharmacological experiment using the 4 Parameter Logistic model. Traditional packages on dose-response modelling such as 'drc' and 'nplr' often draw errors due to convergence failure especially when data have outliers or non-logistic shapes. This package provides robust estimation methods that are less affected by outliers and other initialization methods that work well for data lacking logistic shapes. We provide the bounds on the parameters of the 4PL model that prevent parameter estimates from diverging or converging to zero and base their justification in a statistical principle. These methods are used as remedies to convergence failure problems. Gadagkar, S. R. and Call, G. B. (2015) <doi:10.1016/j.vascn.2014.08.006> Ritz, C. and Baty, F. and Streibig, J. C. and Gerhard, D. (2015) <doi:10.1371/journal.pone.0146021>.
Author: Justin T. Landis [aut, cre],
Hyowon An [aut],
Aubrey G. Bailey [aut]
Maintainer: Justin T. Landis <jtlandis314@gmail.com>
Diff between dr4pl versions 1.1.1 dated 2018-03-21 and 1.1.6 dated 2018-08-24
DESCRIPTION | 8 MD5 | 34 +- NAMESPACE | 1 R/initialization.R | 9 R/main.R | 48 +++ README.md | 5 build/partial.rdb |binary build/vignette.rds |binary data/drc_error_1.rda |binary data/drc_error_2.rda |binary data/drc_error_3.rda |binary data/drc_error_4.rda |binary inst/doc/usageExamples.html | 613 ++++++++++++++++++++++++++-------------- inst/doc/usage_examples_HA.html | 484 ++++++++++++++++++++++--------- man/FindHillBounds.Rd | 2 man/FindInitialParms.Rd | 2 man/FindLogisticGrids.Rd | 3 man/dr4pl.Rd | 19 + 18 files changed, 850 insertions(+), 378 deletions(-)
Title: R Commander Plug-in for University Level Applied Statistics
Description: An R Commander "plug-in" extending functionality of linear models
and providing an interface to Partial Least Squares Regression and Linear and
Quadratic Discriminant analysis. Several statistical summaries are extended,
predictions are offered for additional types of analyses, and extra plots, tests
and mixed models are available.
Author: Kristian Hovde Liland [aut, cre],
Solve Sæbø [aut]
Maintainer: Kristian Hovde Liland <kristian.liland@nmbu.no>
Diff between RcmdrPlugin.NMBU versions 1.8.8 dated 2018-01-03 and 1.8.9 dated 2018-08-24
DESCRIPTION | 8 ++++---- MD5 | 5 +++-- NAMESPACE | 1 + inst/etc/model-capabilities.txt |only 4 files changed, 8 insertions(+), 6 deletions(-)
More information about RcmdrPlugin.NMBU at CRAN
Permanent link
Title: Importing and Manipulating Symmetric Input-Output Tables
Description: Pre-processing tasks related to working with Eurostat's symmetric input-output
tables and provide basic input-output economics calculations. The package is
a part of rOpenGov <http://ropengov.github.io/> to open source open government initiatives.
Author: Daniel Antal
Maintainer: Daniel Antal <daniel.antal@ceemid.eu>
Diff between iotables versions 0.2.9 dated 2018-08-05 and 0.3.1 dated 2018-08-24
iotables-0.2.9/iotables/build |only iotables-0.2.9/iotables/inst |only iotables-0.2.9/iotables/vignettes |only iotables-0.3.1/iotables/DESCRIPTION | 10 iotables-0.3.1/iotables/MD5 | 60 +- iotables-0.3.1/iotables/NAMESPACE | 5 iotables-0.3.1/iotables/NEWS.md | 7 iotables-0.3.1/iotables/R/employment_get.R | 1 iotables-0.3.1/iotables/R/equation_solve.R | 2 iotables-0.3.1/iotables/R/gva_get.R |only iotables-0.3.1/iotables/R/input_coefficient_matrix_create.R | 87 +++ iotables-0.3.1/iotables/R/input_indicator_create.R | 58 +- iotables-0.3.1/iotables/R/iotable_get.R | 244 +++++----- iotables-0.3.1/iotables/R/iotables_download.R | 16 iotables-0.3.1/iotables/R/leontieff_matrix_create.R | 3 iotables-0.3.1/iotables/R/multiplier_create.R | 2 iotables-0.3.1/iotables/R/output_get.R | 125 +++-- iotables-0.3.1/iotables/R/pipe_operator.R |only iotables-0.3.1/iotables/R/use_table_get.R | 186 ++++--- iotables-0.3.1/iotables/man/employment_get.Rd | 1 iotables-0.3.1/iotables/man/gva_get.Rd |only iotables-0.3.1/iotables/man/input_indicator_create.Rd | 3 iotables-0.3.1/iotables/man/iotable_get.Rd | 20 iotables-0.3.1/iotables/man/iotables_download.Rd | 2 iotables-0.3.1/iotables/man/output_get.Rd | 27 - iotables-0.3.1/iotables/man/pipe.Rd |only iotables-0.3.1/iotables/man/use_table_get.Rd | 42 + iotables-0.3.1/iotables/tests/testthat/test_input_coefficient_matrix.R | 3 iotables-0.3.1/iotables/tests/testthat/test_input_indicator_create.R | 2 iotables-0.3.1/iotables/tests/testthat/test_leontieff_matrix_create.R | 14 iotables-0.3.1/iotables/tests/testthat/test_multiplier_create.R |only iotables-0.3.1/iotables/tests/testthat/test_output_get.R | 3 iotables-0.3.1/iotables/tests/testthat/test_primary_input_get.R | 3 iotables-0.3.1/iotables/tests/testthat/test_use_table_get.R | 4 34 files changed, 570 insertions(+), 360 deletions(-)
Title: Bayesian Meta-Analysis of Diagnostic Test Data
Description: Functions for Bayesian meta-analysis of diagnostic test data which
are based on a scale mixtures bivariate random-effects model.
Author: Pablo Emilio Verde [aut, cre]
Maintainer: Pablo Emilio Verde <pabloemilio.verde@hhu.de>
Diff between bamdit versions 3.1.0 dated 2017-05-31 and 3.2.0 dated 2018-08-24
ChangeLog | 6 ++++++ DESCRIPTION | 14 +++++++------- MD5 | 11 ++++++----- R/metadiag.R | 8 ++++---- R/plotdata.R | 7 ++++--- inst |only man/metadiag.Rd | 6 +++--- 7 files changed, 30 insertions(+), 22 deletions(-)
Title: Size-Constrained Clustering
Description: Provides wrappers for 'scclust', a C library for computationally efficient
size-constrained clustering with near-optimal performance.
See <https://github.com/fsavje/scclust> for more information.
Author: Fredrik Savje [aut, cre],
Michael Higgins [aut],
Jasjeet Sekhon [aut]
Maintainer: Fredrik Savje <fredrik.savje@yale.edu>
Diff between scclust versions 0.1.2 dated 2018-07-21 and 0.2.0 dated 2018-08-24
DESCRIPTION | 10 +++---- MD5 | 12 ++++---- NEWS.md | 5 +++ R/sc_clustering.R | 43 ++++++++++++++++++++---------- man/check_clustering.Rd | 5 ++- man/sc_clustering.Rd | 50 +++++++++++++++++++++++------------- src/libscclust/src/nng_clustering.c | 30 ++++++++++++++------- 7 files changed, 101 insertions(+), 54 deletions(-)
Title: R Functions for Robust Statistics
Description: Locations problems, M-estimates of coefficients and scale
in linear regression, Weights for bounded influence regression,
Covariance matrix of the coefficient estimates, Asymptotic
relative efficiency of regression M-estimates, Robust testing
in linear models, High breakdown point regression, M-estimates
of covariance matrices, M-estimates for discrete generalized
linear models.
Author: Alfio Marazzi <Alfio.Marazzi@chuv.ch>
Maintainer: A. Randriamiharisoa <Alex.Randriamiharisoa@chuv.ch>
Diff between robeth versions 2.7-2 dated 2018-06-13 and 2.7-4 dated 2018-08-24
DESCRIPTION | 8 - MD5 | 10 - R/gintac.R | 10 - man/robeth.package.Rd | 6 src/init.c | 4 src/robeth.f | 367 +++++++++++++++++++++++++------------------------- 6 files changed, 199 insertions(+), 206 deletions(-)
Title: Regional Economic Analysis Toolbox
Description: Collection of models and analysis methods used in regional and urban economics and (quantitative) economic geography, e.g. measures of inequality, regional disparities and convergence, regional specialization as well as accessibility and spatial interaction models.
Author: Thomas Wieland
Maintainer: Thomas Wieland <thomas.wieland.geo@googlemail.com>
Diff between REAT versions 2.0.0 dated 2018-03-27 and 2.0.1 dated 2018-08-24
DESCRIPTION | 8 ++++---- MD5 | 22 +++++++++++----------- R/shift.R | 25 +++++++++++++++++++++++-- R/shiftd.R | 12 ++++++++++-- data/EU28.emp.rda |binary data/Freiburg.rda |binary data/G.counties.gdp.rda |binary data/G.regions.emp.rda |binary man/shift.Rd | 6 ++++-- man/shift.growth.Rd | 4 ++++ man/shiftd.Rd | 8 +++++++- man/shifti.Rd | 2 ++ 12 files changed, 65 insertions(+), 22 deletions(-)
Title: Linkage Analysis in Outcrossing Polyploids
Description: Creation of linkage maps in polyploid species from marker dosage
scores of an F1 cross from two heterozygous parents. Currently works for autotriploid, autotetraploid and autohexaploid species,
as well as segmental allotetraploids. Methods are described in a manuscript of Bourke et al. (2018) <doi:10.1093/bioinformatics/bty371>.
Author: Peter Bourke [aut, cre],
Geert van Geest [aut]
Maintainer: Peter Bourke <pbourkey@gmail.com>
Diff between polymapR versions 1.0.15 dated 2018-04-13 and 1.0.17 dated 2018-08-24
DESCRIPTION | 10 - MD5 | 24 +-- R/exported_functions.R | 277 +++++++++++++++++++++++++++++----------- build/vignette.rds |binary inst/doc/Vignette_polymapR.R | 11 + inst/doc/Vignette_polymapR.Rmd | 41 ++++- inst/doc/Vignette_polymapR.html | 62 +++++--- man/add_dup_markers.Rd | 16 +- man/create_phased_maplist.Rd | 12 + man/orient_and_merge_maps.Rd | 5 man/write.TSNPM.Rd | 2 vignettes/Vignette_polymapR.Rmd | 41 ++++- vignettes/bibliography.bib | 11 + 13 files changed, 368 insertions(+), 144 deletions(-)
Title: Gaussian Parsimonious Clustering Models with Covariates
Description: Clustering via parsimonious Gaussian Mixtures of Experts using the MoEClust models introduced by Murphy and Murphy (2017) <arXiv:1711.05632>. This package fits finite Gaussian mixture models with a formula interface for supplying gating and/or expert network covariates using a range of parsimonious covariance parameterisations via the EM algorithm. Visualisation of the results of such models using generalised pairs plots is also facilitated.
Author: Keefe Murphy [aut, cre],
Thomas Brendan Murphy [ctb]
Maintainer: Keefe Murphy <keefe.murphy@ucd.ie>
Diff between MoEClust versions 1.1.0 dated 2018-02-06 and 1.2.0 dated 2018-08-24
MoEClust-1.1.0/MoEClust/inst/README.md |only MoEClust-1.1.0/MoEClust/man/MoEClust.Rd |only MoEClust-1.1.0/MoEClust/man/MoE_aitken.Rd |only MoEClust-1.1.0/MoEClust/man/MoE_qclass.Rd |only MoEClust-1.2.0/MoEClust/DESCRIPTION | 18 MoEClust-1.2.0/MoEClust/MD5 | 72 - MoEClust-1.2.0/MoEClust/NAMESPACE | 15 MoEClust-1.2.0/MoEClust/R/Functions.R | 1685 ++++++++++++++++-------- MoEClust-1.2.0/MoEClust/R/MoEClust.R | 27 MoEClust-1.2.0/MoEClust/R/Plotting_Functions.R | 648 ++++++--- MoEClust-1.2.0/MoEClust/R/data.R | 2 MoEClust-1.2.0/MoEClust/README.md |only MoEClust-1.2.0/MoEClust/build/vignette.rds |binary MoEClust-1.2.0/MoEClust/inst/CITATION | 4 MoEClust-1.2.0/MoEClust/inst/NEWS.md | 74 + MoEClust-1.2.0/MoEClust/inst/doc/MoEClust.R | 33 MoEClust-1.2.0/MoEClust/inst/doc/MoEClust.Rmd | 64 MoEClust-1.2.0/MoEClust/inst/doc/MoEClust.html | 134 + MoEClust-1.2.0/MoEClust/man/MoEClust-package.Rd |only MoEClust-1.2.0/MoEClust/man/MoE_Uncertainty.Rd |only MoEClust-1.2.0/MoEClust/man/MoE_clust.Rd | 70 MoEClust-1.2.0/MoEClust/man/MoE_compare.Rd | 38 MoEClust-1.2.0/MoEClust/man/MoE_control.Rd | 106 + MoEClust-1.2.0/MoEClust/man/MoE_crit.Rd | 19 MoEClust-1.2.0/MoEClust/man/MoE_dens.Rd | 37 MoEClust-1.2.0/MoEClust/man/MoE_estep.Rd | 40 MoEClust-1.2.0/MoEClust/man/MoE_gpairs.Rd | 99 - MoEClust-1.2.0/MoEClust/man/MoE_mahala.Rd | 6 MoEClust-1.2.0/MoEClust/man/MoE_news.Rd |only MoEClust-1.2.0/MoEClust/man/MoE_plotCrit.Rd | 12 MoEClust-1.2.0/MoEClust/man/MoE_plotGate.Rd | 19 MoEClust-1.2.0/MoEClust/man/MoE_plotLogLik.Rd | 14 MoEClust-1.2.0/MoEClust/man/aitken.Rd |only MoEClust-1.2.0/MoEClust/man/as.Mclust.Rd | 35 MoEClust-1.2.0/MoEClust/man/drop_constants.Rd | 9 MoEClust-1.2.0/MoEClust/man/drop_levels.Rd | 8 MoEClust-1.2.0/MoEClust/man/expert_covar.Rd | 7 MoEClust-1.2.0/MoEClust/man/force_posiDiag.Rd |only MoEClust-1.2.0/MoEClust/man/noise_vol.Rd | 5 MoEClust-1.2.0/MoEClust/man/plot.MoEClust.Rd | 17 MoEClust-1.2.0/MoEClust/man/predict.MoEClust.Rd |only MoEClust-1.2.0/MoEClust/man/quant_clust.Rd |only MoEClust-1.2.0/MoEClust/vignettes/MoEClust.Rmd | 64 43 files changed, 2338 insertions(+), 1043 deletions(-)
Title: Training Datasets for iC10 Package
Description: Training datasets for iC10; which implements the classifier described in the paper 'Genome-driven integrated classification of breast cancer validated in over 7,500 samples' (Ali HR et al., Genome Biology 2014). It uses copy number and/or expression form breast cancer data, trains a pamr classifier (Tibshirani et al.) with the features available and predicts the iC10 group. Genomic annotation for the training dataset has been obtained from Mark Dunning's lluminaHumanv3.db package.
Author: Oscar M Rueda and Jose Antonio Seoane Fernandez
Maintainer: Oscar M. Rueda <Oscar.Rueda@cruk.cam.ac.uk>
Diff between iC10TrainingData versions 1.0.1 dated 2014-09-26 and 1.3.1 dated 2018-08-24
DESCRIPTION | 12 ++++++------ MD5 | 11 ++++++----- build |only data/Map.All.rda |binary data/Map.CN.rda |binary data/Map.Exp.rda |binary man/iC10TrainingData-package.Rd | 30 ++++++++++++++++-------------- 7 files changed, 28 insertions(+), 25 deletions(-)
More information about iC10TrainingData at CRAN
Permanent link
Title: Access the Bioconductor Project Package Repository
Description: A convenient tool to install and update Bioconductor packages.
Author: Martin Morgan [aut] (<https://orcid.org/0000-0002-5874-8148>),
Marcel Ramos [ctb, cre] (<https://orcid.org/0000-0002-3242-0582>)
Maintainer: Marcel Ramos <marcel.ramos@roswellpark.org>
Diff between BiocManager versions 1.30.1 dated 2018-06-15 and 1.30.2 dated 2018-08-24
DESCRIPTION | 10 MD5 | 14 - NEWS | 24 + R/install.R | 59 ++-- R/valid.R | 56 ++-- build/vignette.rds |binary inst/doc/BiocManager.html | 552 ++++++++++++++++++++++++++++++++++++++---- tests/testthat/test_install.R | 23 + 8 files changed, 644 insertions(+), 94 deletions(-)
Title: Extensions of Exponential Random Graph Models
Description: Extensions of Exponential Random Graph Models (ERGM): Temporal Exponential Random Graph Models (TERGM), Generalized Exponential Random Graph Models (GERGM), Temporal Network Autocorrelation Models (TNAM), and Relational Event Models (REM). This package acts as a meta-package for several sub-packages on which it depends.
Author: Philip Leifeld [aut, cre],
Skyler J. Cranmer [aut],
Bruce A. Desmarais [aut]
Maintainer: Philip Leifeld <philip.leifeld@glasgow.ac.uk>
Diff between xergm versions 1.8.2 dated 2017-04-02 and 1.8.3 dated 2018-08-24
DESCRIPTION | 13 ++++++------- MD5 | 4 ++-- man/xergm-package.Rd | 2 ++ 3 files changed, 10 insertions(+), 9 deletions(-)
Title: Analysis of Diversity
Description: Includes functions, data sets and examples for the calculation of various indices of biodiversity including species, functional and phylogenetic diversity. Part of the indices are expressed in terms of equivalent numbers of species. It also provides ways to partition biodiversity across spatial or temporal scales (alpha, beta, gamma diversities). In addition to the quantification of biodiversity, ordination approaches are available which rely on diversity indices and allow the detailed identification of species, functional or phylogenetic differences between communities.
Author: Sandrine Pavoine
Maintainer: Sandrine Pavoine <sandrine.pavoine@mnhn.fr>
Diff between adiv versions 1.1 dated 2017-09-14 and 1.2 dated 2018-08-24
DESCRIPTION | 13 +++++----- MD5 | 61 +++++++++++++++++++++++++++++++------------------- NAMESPACE | 11 ++++++--- R/QE.R | 9 ++++--- R/Rentropy.R |only R/decdiv.R |only R/dissABC.R | 1 R/divparam.R | 34 ++++++++++++++++++++++++++- R/dsimcom.R | 30 ++++++++++++------------ R/eveparam.R |only R/evoCA.R | 1 R/evoNSCA.R | 1 R/evodivparam.R |only R/evopcachord.R | 4 +-- R/evopcahellinger.R | 3 +- R/plot.decdiv.R |only R/plot.divparam.R | 8 ++++-- R/plot.eveparam.R |only R/plot.evoCA.R |only R/plot.evodivparam.R |only R/rtestdecdiv.R |only R/speciesdiv.R |only R/specieseve.R |only build/partial.rdb |binary man/QE.Rd | 6 ++++ man/Rentropy.Rd |only man/abgevodivparam.Rd | 2 - man/decdiv.Rd |only man/distinctTopo.Rd | 6 ++++ man/distinctTree.Rd | 6 ++++ man/distinctUltra.Rd | 6 ++++ man/divparam.Rd | 20 ++++++++++------ man/dsimcom.Rd | 2 - man/eveparam.Rd |only man/evoCA.Rd | 47 ++++++++++++++++++++++++++++++++++---- man/evoNSCA.Rd | 18 +++++++++++++- man/evodivparam.Rd |only man/evopca.Rd | 18 +++++++++++++- man/speciesdiv.Rd |only man/specieseve.Rd |only 40 files changed, 233 insertions(+), 74 deletions(-)
Title: R at the Command-Line via 'r'
Description: A scripting and command-line front-end
is provided by 'r' (aka 'littler') as a lightweight binary wrapper around
the GNU R language and environment for statistical computing and graphics.
While R can be used in batch mode, the r binary adds full support for
both 'shebang'-style scripting (i.e. using a hash-mark-exclamation-path
expression as the first line in scripts) as well as command-line use in
standard Unix pipelines. In other words, r provides the R language without
the environment.
Author: Dirk Eddelbuettel and Jeff Horner
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between littler versions 0.3.3 dated 2017-12-17 and 0.3.4 dated 2018-08-24
ChangeLog | 94 +++++++++++++++++++++++++++++++++ DESCRIPTION | 8 +- MD5 | 61 ++++++++++----------- README.md | 2 build/vignette.rds |binary configure | 18 +++--- configure.ac | 2 inst/NEWS.Rd | 15 +++++ inst/doc/littler-examples.Rmd | 79 +++++++++++++++++++++------ inst/doc/littler-examples.html | 108 ++++++++++++++++++++++++++------------ inst/examples/build.r | 5 - inst/examples/check.r | 10 +-- inst/examples/compAttr.r | 4 - inst/examples/dratInsert.r | 5 - inst/examples/fsizes.r | 2 inst/examples/getRStudioDesktop.r | 18 ++++-- inst/examples/getRStudioServer.r | 17 ++++- inst/examples/highlightsweave.r | 2 inst/examples/install2.r | 71 +++++++++++++----------- inst/examples/installGithub.r | 4 - inst/examples/installRepo.r | 4 - inst/examples/kitten.r |only inst/examples/knit.r | 2 inst/examples/pnrrs.r | 2 inst/examples/rcc.r | 13 ++-- inst/examples/rd2md.r | 12 +--- inst/examples/render.r | 11 +-- inst/examples/roxy.r | 4 - inst/examples/shiny.r | 4 - inst/examples/testInstalled.r | 8 +- inst/examples/update.r | 46 ++++++++++++---- vignettes/littler-examples.Rmd | 79 +++++++++++++++++++++------ 32 files changed, 487 insertions(+), 223 deletions(-)
Title: R Interface to 'Keras'
Description: Interface to 'Keras' <https://keras.io>, a high-level neural
networks 'API'. 'Keras' was developed with a focus on enabling fast experimentation,
supports both convolution based networks and recurrent networks (as well as
combinations of the two), and runs seamlessly on both 'CPU' and 'GPU' devices.
Author: JJ Allaire [aut, cre],
François Chollet [aut, cph],
RStudio [ctb, cph, fnd],
Google [ctb, cph, fnd],
Yuan Tang [ctb, cph] (<https://orcid.org/0000-0001-5243-233X>),
Daniel Falbel [ctb, cph],
Wouter Van Der Bijl [ctb, cph],
Martin Studer [ctb, cph]
Maintainer: JJ Allaire <jj@rstudio.com>
Diff between keras versions 2.1.6 dated 2018-04-29 and 2.2.0 dated 2018-08-24
DESCRIPTION | 8 MD5 | 205 ++++++++++++++--------- NAMESPACE | 12 + NEWS.md | 56 ++++++ R/applications.R | 63 +++++++ R/backend.R | 54 +++++- R/callbacks.R | 25 ++ R/constraints.R | 4 R/history.R | 4 R/install.R | 9 - R/layer-custom.R | 5 R/layers-activations.R | 29 +++ R/layers-convolutional.R | 15 + R/layers-core.R | 34 ++- R/metrics.R | 31 ++- R/model-custom.R |only R/model.R | 153 ++++++++++++++--- R/package.R | 11 - R/preprocessing.R | 40 +++- R/reexports.R | 8 R/utils.R | 23 ++ build/vignette.rds |binary inst/doc/about_keras_layers.html | 10 - inst/doc/about_keras_models.Rmd | 6 inst/doc/about_keras_models.html | 16 + inst/doc/applications.Rmd | 9 - inst/doc/applications.html | 18 +- inst/doc/backend.Rmd | 6 inst/doc/backend.html | 23 +- inst/doc/custom_layers.html | 10 - inst/doc/custom_models.R |only inst/doc/custom_models.Rmd |only inst/doc/custom_models.html |only inst/doc/faq.Rmd | 1 inst/doc/faq.html | 11 - inst/doc/functional_api.html | 10 - inst/doc/getting_started.Rmd | 53 +++++ inst/doc/getting_started.html | 56 ++++-- inst/doc/guide_keras.R |only inst/doc/guide_keras.Rmd |only inst/doc/guide_keras.html |only inst/doc/sequential_model.R | 7 inst/doc/sequential_model.Rmd | 9 - inst/doc/sequential_model.html | 21 +- inst/doc/training_callbacks.html | 10 - inst/doc/training_visualization.html | 10 - inst/doc/tutorial_basic_classification.R |only inst/doc/tutorial_basic_classification.Rmd |only inst/doc/tutorial_basic_classification.html |only inst/doc/tutorial_basic_regression.R |only inst/doc/tutorial_basic_regression.Rmd |only inst/doc/tutorial_basic_regression.html |only inst/doc/tutorial_basic_text_classification.R |only inst/doc/tutorial_basic_text_classification.Rmd |only inst/doc/tutorial_basic_text_classification.html |only inst/doc/tutorial_overfit_underfit.R |only inst/doc/tutorial_overfit_underfit.Rmd |only inst/doc/tutorial_overfit_underfit.html |only inst/doc/tutorial_save_and_restore.R |only inst/doc/tutorial_save_and_restore.Rmd |only inst/doc/tutorial_save_and_restore.html |only inst/doc/why_use_keras.Rmd | 4 inst/doc/why_use_keras.html | 2 inst/python/kerastools/constraint.py | 2 inst/python/kerastools/layer.py | 13 + inst/python/kerastools/model.py |only man/KerasLayer.Rd | 1 man/application_mobilenet_v2.Rd |only man/callback_early_stopping.Rd | 6 man/callback_tensorboard.Rd | 6 man/flow_images_from_data.Rd | 7 man/flow_images_from_directory.Rd | 2 man/get_layer.Rd | 2 man/image_to_array.Rd | 9 - man/install_keras.Rd | 8 man/k_batch_normalization.Rd | 5 man/k_categorical_crossentropy.Rd | 5 man/k_is_tensor.Rd |only man/k_sparse_categorical_crossentropy.Rd | 6 man/keras_model_custom.Rd |only man/layer_activation.Rd | 1 man/layer_activation_elu.Rd | 1 man/layer_activation_leaky_relu.Rd | 1 man/layer_activation_parametric_relu.Rd | 1 man/layer_activation_relu.Rd |only man/layer_activation_softmax.Rd | 1 man/layer_activation_thresholded_relu.Rd | 1 man/layer_conv_1d.Rd | 20 +- man/layer_flatten.Rd | 14 + man/metric_binary_accuracy.Rd | 29 ++- man/reexports.Rd | 8 man/with_custom_object_scope.Rd | 7 tests/testthat/digit_resized.jpeg |binary tests/testthat/test-applications.R | 3 tests/testthat/test-backend.R | 1 tests/testthat/test-custom-layers.R | 2 tests/testthat/test-custom-models.R |only tests/testthat/test-layers.R | 23 +- tests/testthat/test-metrics.R | 19 ++ tests/testthat/test-model-persistence.R | 10 - tests/testthat/utils.R | 5 vignettes/about_keras_models.Rmd | 6 vignettes/applications.Rmd | 9 - vignettes/backend.Rmd | 6 vignettes/custom_models.Rmd |only vignettes/faq.Rmd | 1 vignettes/getting_started.Rmd | 53 +++++ vignettes/guide_keras.Rmd |only vignettes/images/baseline_model.png |only vignettes/images/boston_mae.png |only vignettes/images/boston_mae_earlystop.png |only vignettes/images/fashion_mnist.png |only vignettes/images/fashion_mnist_classes.png |only vignettes/images/fashion_mnist_heatmap.png |only vignettes/images/fashion_mnist_predictions.png |only vignettes/images/imdb_losscurve.png |only vignettes/images/losscurves_dropout.png |only vignettes/images/losscurves_l2.png |only vignettes/images/losscurves_overfitting.png |only vignettes/images/multi-hot.png |only vignettes/sequential_model.Rmd | 9 - vignettes/tutorial_basic_classification.Rmd |only vignettes/tutorial_basic_regression.Rmd |only vignettes/tutorial_basic_text_classification.Rmd |only vignettes/tutorial_overfit_underfit.Rmd |only vignettes/tutorial_save_and_restore.Rmd |only vignettes/why_use_keras.Rmd | 4 127 files changed, 1030 insertions(+), 358 deletions(-)
Title: Evaluation and Experimental Design for Binomial Group Testing
Description: Methods for estimation and hypothesis testing of proportions
in group testing designs: methods for estimating a proportion in a single
population (assuming sensitivity and specificity equal to 1 in designs
with equal group sizes), as well as hypothesis tests and
functions for experimental design for this situation. For
estimating one proportion or the difference of proportions, a
number of confidence interval methods are included, which can
deal with various different pool sizes. Further, regression
methods are implemented for simple pooling and matrix pooling
designs.
Methods for identification of positive items in group
testing designs: Optimal testing configurations can be found
for hierarchical and array-based algorithms. Operating
characteristics can be calculated for testing configurations
across a wide variety of situations.
Author: Boan Zhang [aut],
Christopher Bilder [aut],
Brad Biggerstaff [aut],
Frank Schaarschmidt [aut, cre],
Brianna Hitt [aut]
Maintainer: Frank Schaarschmidt <schaarschmidt@biostat.uni-hannover.de>
Diff between binGroup versions 2.1-1 dated 2018-03-16 and 2.2-1 dated 2018-08-24
binGroup-2.1-1/binGroup/R/Masterpool.Array.Measures.R |only binGroup-2.2-1/binGroup/DESCRIPTION | 32 binGroup-2.2-1/binGroup/MD5 | 60 binGroup-2.2-1/binGroup/NAMESPACE | 3 binGroup-2.2-1/binGroup/R/Array.Functions.R | 308 ++- binGroup-2.2-1/binGroup/R/Dorfman.Functions.R | 332 +++- binGroup-2.2-1/binGroup/R/Hierarchical.Functions.R | 1240 +++++++++------ binGroup-2.2-1/binGroup/R/Inf.Array.R | 425 ++--- binGroup-2.2-1/binGroup/R/Inf.D3.R | 434 ++--- binGroup-2.2-1/binGroup/R/Inf.Dorf.R | 607 ++++--- binGroup-2.2-1/binGroup/R/NI.A2M.R | 441 +++-- binGroup-2.2-1/binGroup/R/NI.Array.R | 274 +-- binGroup-2.2-1/binGroup/R/NI.D3.R | 357 ++-- binGroup-2.2-1/binGroup/R/NI.Dorf.R | 289 +-- binGroup-2.2-1/binGroup/R/OTC.R | 502 +++--- binGroup-2.2-1/binGroup/build |only binGroup-2.2-1/binGroup/inst |only binGroup-2.2-1/binGroup/man/Array.Measures.Rd |only binGroup-2.2-1/binGroup/man/Inf.Array.Rd | 205 +- binGroup-2.2-1/binGroup/man/Inf.D3.Rd | 214 +- binGroup-2.2-1/binGroup/man/Inf.Dorf.Rd | 224 +- binGroup-2.2-1/binGroup/man/Informative.array.prob.Rd |only binGroup-2.2-1/binGroup/man/MasterPool.Array.Measures.Rd |only binGroup-2.2-1/binGroup/man/NI.A2M.Rd | 173 +- binGroup-2.2-1/binGroup/man/NI.Array.Rd | 168 +- binGroup-2.2-1/binGroup/man/NI.D3.Rd | 169 +- binGroup-2.2-1/binGroup/man/NI.Dorf.Rd | 168 +- binGroup-2.2-1/binGroup/man/OTC.Rd | 322 ++- binGroup-2.2-1/binGroup/man/accuracy.dorf.Rd |only binGroup-2.2-1/binGroup/man/beta.dist.Rd |only binGroup-2.2-1/binGroup/man/binGroup-package.Rd | 66 binGroup-2.2-1/binGroup/man/characteristics.pool.Rd |only binGroup-2.2-1/binGroup/man/hierarchical.desc2.Rd |only binGroup-2.2-1/binGroup/man/inf.dorf.measures.Rd |only binGroup-2.2-1/binGroup/man/opt.info.dorf.Rd |only binGroup-2.2-1/binGroup/man/opt.pool.size.Rd |only binGroup-2.2-1/binGroup/man/p.vec.func.Rd |only binGroup-2.2-1/binGroup/man/pool.specific.dorf.Rd |only binGroup-2.2-1/binGroup/man/thresh.val.dorf.Rd |only 39 files changed, 4413 insertions(+), 2600 deletions(-)
Title: Trends and Indices for Monitoring Data
Description: The TRIM model is widely used for estimating growth and decline of
animal populations based on (possibly sparsely available) count data. The
current package is a reimplementation of the original TRIM software developed
at Statistics Netherlands by Jeroen Pannekoek. See
<https://www.cbs.nl/en-gb/society/nature-and-environment/indices-and-trends%2d%2dtrim%2d%2d>
for more information about TRIM.
Author: Patrick Bogaart [aut, cre],
Mark van der Loo [aut],
Jeroen Pannekoek [aut]
Maintainer: Patrick Bogaart <rtrim@cbs.nl>
Diff between rtrim versions 2.0.5 dated 2018-08-16 and 2.0.6 dated 2018-08-24
DESCRIPTION | 6 MD5 | 20 - NEWS | 4 R/rtrim-pkg.R | 2 R/trim_index.R | 4 R/trim_post.R | 2 inst/doc/Skylark_example.html | 399 +++---------------------------- inst/doc/rtrim_2_extensions.html | 339 +------------------------- inst/doc/rtrim_confidence_intervals.html | 27 -- inst/doc/rtrim_for_TRIM_users.html | 4 inst/doc/taming_overdispersion.html | 60 ---- 11 files changed, 83 insertions(+), 784 deletions(-)
Title: Call R from R
Description: It is sometimes useful to perform a computation in a
separate R process, without affecting the current R process at all.
This packages does exactly that.
Author: Gábor Csárdi [aut, cre, cph] (<https://orcid.org/0000-0001-7098-9676>),
Winston Chang [aut],
RStudio [cph, fnd],
Mango Solutions [cph, fnd]
Maintainer: Gábor Csárdi <csardi.gabor@gmail.com>
Diff between callr versions 2.0.4 dated 2018-05-15 and 3.0.0 dated 2018-08-24
DESCRIPTION | 12 ++-- MD5 | 80 +++++++++++++++------------- NAMESPACE | 9 +++ NEWS.md | 9 +++ R/check.R | 2 R/eval-bg.R | 3 - R/eval.R | 3 - R/options.R | 6 +- R/presets.R | 4 - R/r-process.R | 3 - R/r-session.R |only R/rcmd.R | 6 -- R/result.R | 8 +- R/script.R | 64 ++++++++++++++++------ R/setup.R | 105 ++++++++++++++++++++++++------------- R/utils.R | 28 +++++++++ man/r.Rd | 21 +++---- man/r_bg.Rd | 8 +- man/r_copycat.Rd | 9 +-- man/r_process.Rd | 3 - man/r_session.Rd |only man/r_session_options.Rd |only man/r_vanilla.Rd | 5 + man/rcmd.Rd | 15 +++-- man/rcmd_bg.Rd | 5 + man/rcmd_copycat.Rd | 1 man/rcmd_safe.Rd | 8 -- man/reexports.Rd | 2 tests/testthat.R | 12 +++- tests/testthat/helper.R | 19 ++++++ tests/testthat/test-callback.R | 3 + tests/testthat/test-error.R | 4 + tests/testthat/test-eval.R | 10 +++ tests/testthat/test-libpath.R |only tests/testthat/test-presets.R | 16 +++++ tests/testthat/test-quit.R | 21 +++++-- tests/testthat/test-r-bg.R | 14 ++++ tests/testthat/test-r-process.R | 2 tests/testthat/test-r-session.R |only tests/testthat/test-rcmd-bg.R | 6 ++ tests/testthat/test-rcmd-process.R | 2 tests/testthat/test-rcmd.R | 7 ++ tests/testthat/test-timeout.R | 1 tests/testthat/test-utils.R |only 44 files changed, 376 insertions(+), 160 deletions(-)
Title: Bayesian Generalized Linear Regression
Description: Bayesian Generalized Linear Regression.
Author: Gustavo de los Campos, Paulino Perez Rodriguez,
Maintainer: Paulino Perez Rodriguez <perpdgo@colpos.mx>
Diff between BGLR versions 1.0.5.1 dated 2018-08-21 and 1.0.7 dated 2018-08-24
DESCRIPTION | 15 +++++---------- MD5 | 33 +++++++++++++++++---------------- NAMESPACE | 2 +- R/BGLR.R | 6 +++--- R/utils.R | 6 +++--- build/vignette.rds |binary inst/doc/BGLR-extdoc.Rnw | 6 +++--- inst/doc/BGLR-extdoc.pdf |binary man/mice.A.Rd | 4 ---- man/mice.Rd | 4 ---- man/mice.X.Rd | 3 --- man/mice.pheno.Rd | 3 --- man/read_bed.Rd | 2 +- man/write_bed.Rd | 2 +- src/Makevars | 10 ++++------ src/Makevars.win | 6 +++--- src/init.c |only src/util_plink.c | 6 +++--- 18 files changed, 44 insertions(+), 64 deletions(-)
Title: Discovery of Motifs in Spatial-Time Series
Description: Allows to identify motifs in spatial-time series. A motif is a previously unknown subsequence of a (spatial) time series with relevant number of occurrences. For this purpose, the Combined Series Approach (CSA) is used.
Author: Amin Bazaz [aut] (Polytech'Montpellier),
Heraldo Borges [aut, cre] (CEFET/RJ),
Eduardo Ogasawara [aut] (CEFET/RJ)
Maintainer: Heraldo Borges <stmotif@eic.cefet-rj.br>
Diff between STMotif versions 0.1.0 dated 2018-08-07 and 0.1.1 dated 2018-08-24
STMotif-0.1.0/STMotif/inst/doc/check-candidates.R |only STMotif-0.1.0/STMotif/inst/doc/check-candidates.Rmd |only STMotif-0.1.0/STMotif/inst/doc/check-candidates.html |only STMotif-0.1.0/STMotif/inst/doc/example.R |only STMotif-0.1.0/STMotif/inst/doc/example.Rmd |only STMotif-0.1.0/STMotif/inst/doc/example.html |only STMotif-0.1.0/STMotif/inst/doc/motifs-discovery.R |only STMotif-0.1.0/STMotif/inst/doc/motifs-discovery.Rmd |only STMotif-0.1.0/STMotif/inst/doc/motifs-discovery.html |only STMotif-0.1.0/STMotif/vignettes/check-candidates.Rmd |only STMotif-0.1.0/STMotif/vignettes/example.Rmd |only STMotif-0.1.0/STMotif/vignettes/motifs-discovery.Rmd |only STMotif-0.1.1/STMotif/DESCRIPTION | 24 STMotif-0.1.1/STMotif/MD5 | 74 +- STMotif-0.1.1/STMotif/NEWS.md | 5 STMotif-0.1.1/STMotif/R/STMotif.R | 4 STMotif-0.1.1/STMotif/R/example_dataset.R | 2 STMotif-0.1.1/STMotif/R/mainFunction.R | 63 - STMotif-0.1.1/STMotif/R/subFunction.R | 28 STMotif-0.1.1/STMotif/R/visualization.R | 48 - STMotif-0.1.1/STMotif/README.md | 2 STMotif-0.1.1/STMotif/build/vignette.rds |binary STMotif-0.1.1/STMotif/data/example_data.RData |binary STMotif-0.1.1/STMotif/inst/doc/discovery-motifs.R |only STMotif-0.1.1/STMotif/inst/doc/discovery-motifs.Rmd |only STMotif-0.1.1/STMotif/inst/doc/discovery-motifs.html |only STMotif-0.1.1/STMotif/inst/doc/examples.R |only STMotif-0.1.1/STMotif/inst/doc/examples.Rmd |only STMotif-0.1.1/STMotif/inst/doc/examples.html |only STMotif-0.1.1/STMotif/inst/doc/generation-of-candidates.R | 2 STMotif-0.1.1/STMotif/inst/doc/generation-of-candidates.Rmd | 28 STMotif-0.1.1/STMotif/inst/doc/generation-of-candidates.html | 350 ++++++++--- STMotif-0.1.1/STMotif/inst/doc/validate-candidates.R |only STMotif-0.1.1/STMotif/inst/doc/validate-candidates.Rmd |only STMotif-0.1.1/STMotif/inst/doc/validate-candidates.html |only STMotif-0.1.1/STMotif/inst/shiny-visualization/ui.R | 4 STMotif-0.1.1/STMotif/man/STMotif.Rd | 4 STMotif-0.1.1/STMotif/man/STSIdentifyCandidateSTMotifs.Rd | 24 STMotif-0.1.1/STMotif/man/STSIdentifySTMotifs.Rd | 14 STMotif-0.1.1/STMotif/man/STSIdentifyTightSTMotifs.Rd | 20 STMotif-0.1.1/STMotif/man/STSRankTightSTMotifs.Rd | 6 STMotif-0.1.1/STMotif/man/displayPlotSeries.Rd | 10 STMotif-0.1.1/STMotif/man/example_dataset.Rd | 2 STMotif-0.1.1/STMotif/man/intensityDataset.Rd | 8 STMotif-0.1.1/STMotif/man/runVisualization.Rd | 6 STMotif-0.1.1/STMotif/man/top5motifs.Rd | 8 STMotif-0.1.1/STMotif/vignettes/discovery-motifs.Rmd |only STMotif-0.1.1/STMotif/vignettes/examples.Rmd |only STMotif-0.1.1/STMotif/vignettes/generation-of-candidates.Rmd | 28 STMotif-0.1.1/STMotif/vignettes/validate-candidates.Rmd |only 50 files changed, 488 insertions(+), 276 deletions(-)
Title: Dependent Mixture Models - Hidden Markov Models of GLMs and
Other Distributions in S4
Description: Fits latent (hidden) Markov models on mixed categorical and continuous (time series) data, otherwise known as dependent mixture models.
Author: Ingmar Visser <i.visser@uva.nl>, Maarten Speekenbrink <m.speekenbrink@ucl.ac.uk>
Maintainer: Ingmar Visser <i.visser@uva.nl>
Diff between depmixS4 versions 1.3-3 dated 2016-02-15 and 1.3-5 dated 2018-08-24
DESCRIPTION | 11 ++++++----- MD5 | 27 ++++++++++++++------------- NAMESPACE | 2 ++ NEWS | 23 +++++++++++++++++++++++ R/EM.R | 42 ++++++++++++++++++++++++++++++++++++++---- R/allGenerics.R | 12 ++++++------ R/fb.R | 23 +++++++++++++---------- R/responseGLM.R | 17 +++++++++++++++-- build/vignette.rds |binary inst/doc/depmixS4.pdf |binary man/depmixS4-package.Rd | 8 -------- man/makeDepmix.Rd | 1 + src/depmixS4_init.c |only src/fb.c | 2 +- src/fb.h | 2 +- 15 files changed, 120 insertions(+), 50 deletions(-)
Title: Functions for Processing Accelerometer Data
Description: A collection of functions that perform operations on time-series accelerometer data, such as identify non-wear time, flag minutes that are part of an activity bout, and find the maximum 10-minute average count value. The functions are generally very flexible, allowing for a variety of algorithms to be implemented. Most of the functions are written in C++ for efficiency.
Author: Dane R. Van Domelen
Maintainer: Dane R. Van Domelen <vandomed@gmail.com>
Diff between accelerometry versions 3.1.1 dated 2018-08-21 and 3.1.2 dated 2018-08-24
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- R/accelerometry.R | 4 ++-- inst/doc/accelerometry.Rmd | 3 ++- inst/doc/accelerometry.html | 6 +++--- man/accelerometry.Rd | 4 ++-- src/artifacts.cpp | 2 +- vignettes/accelerometry.Rmd | 3 ++- 8 files changed, 23 insertions(+), 21 deletions(-)
Title: PLS Analyses for Genomics
Description: Routines for PLS-based genomic analyses,
implementing PLS methods for classification with
microarray data and prediction of transcription factor
activities from combined ChIP-chip analysis. The >=1.2-1
versions include two new classification methods for microarray
data: GSIM and Ridge PLS. The >=1.3 versions includes a
new classification method combining variable selection and
compression in logistic regression context: logit-SPLS; and
an adaptive version of the sparse PLS.
Author: Anne-Laure Boulesteix <boulesteix@ibe.med.uni-muenchen.de>,
Ghislain Durif <gd.dev@libertymail.net>,
Sophie Lambert-Lacroix
<sophie.lambert-lacroix@univ-grenoble-alpes.fr>, Julie Peyre
<Julie.Peyre@univ-grenoble-alpes.fr>, and Korbinian Strimmer
<k.strimmer@imperial.ac.uk>.
Maintainer: Ghislain Durif <gd.dev@libertymail.net>
Diff between plsgenomics versions 1.5-1 dated 2017-09-14 and 1.5-2 dated 2018-08-24
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- R/gsim.R | 8 ++++++-- 3 files changed, 12 insertions(+), 8 deletions(-)
Title: Multivariate Generalized Linear Mixed Models for Ranking Sports
Teams
Description: Maximum likelihood estimates are obtained via an EM algorithm with either a first-order or a fully exponential Laplace approximation.
Author: Andrew T. Karl (Adsurgo LLC), Jennifer Broatch (Arizona State University)
Maintainer: Andrew T. Karl <akarl@asu.edu>
Diff between mvglmmRank versions 1.2-1 dated 2018-04-19 and 1.2-2 dated 2018-08-24
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NEWS | 4 ++++ R/normal_cre.R | 5 +++-- man/mvglmmRank-package.Rd | 4 ++-- 5 files changed, 17 insertions(+), 12 deletions(-)
Title: Temporal Exponential Random Graph Models by Bootstrapped
Pseudolikelihood
Description: Temporal Exponential Random Graph Models (TERGM) estimated by maximum pseudolikelihood with bootstrapped confidence intervals or Markov Chain Monte Carlo maximum likelihood. Goodness of fit assessment for ERGMs, TERGMs, and SAOMs. Micro-level interpretation of ERGMs and TERGMs.
Author: Philip Leifeld [aut, cre],
Skyler J. Cranmer [ctb],
Bruce A. Desmarais [ctb]
Maintainer: Philip Leifeld <philip.leifeld@glasgow.ac.uk>
Diff between btergm versions 1.9.1 dated 2018-02-15 and 1.9.3 dated 2018-08-24
DESCRIPTION | 15 ++++----- MD5 | 16 +++++----- NAMESPACE | 2 - R/btergm.R | 16 +++++++++- R/gofmethods.R | 19 ++++++++++-- R/interpretation.R | 75 ++++++++++++++++++++++++++----------------------- man/btergm.Rd | 2 - man/edgeprob.Rd | 2 - man/simulate.btergm.Rd | 2 - 9 files changed, 88 insertions(+), 61 deletions(-)