Title: Construct, Evaluate and Plot Value and Utility Functions
Description: Construct and plot objective hierarchies and associated value and utility functions.
Evaluate the values and utilities and visualize the results as colored objective hierarchies or tables.
Visualize uncertainty by plotting median and quantile intervals within the nodes of objective hierarchies.
Get numerical results of the evaluations in standard R data types for further processing.
Author: Peter Reichert <peter.reichert@eawag.ch>
with contributions by Nele Schuwirth <nele.schuwirth@eawag.ch>
Maintainer: Peter Reichert <peter.reichert@eawag.ch>
Diff between utility versions 1.4.2 dated 2017-11-16 and 1.4.3 dated 2018-09-27
DESCRIPTION | 8 +-- MD5 | 61 ++++++++++++++------------- NAMESPACE | 1 R/utility.aggregation.r | 6 ++ R/utility.aux.r | 16 +++++++ R/utility.endnode.cond.r | 28 ++++++------ R/utility.endnode.intpol1d.r | 7 ++- R/utility.endnode.intpol2d.r | 28 ++++++++++++ R/utility.endnode.parfun1d.r | 4 + R/utility.plot.r | 62 ++++++++++++++++++---------- inst/NEWS | 41 ++++++++++++++---- man/figures/aggregationadd.pdf |binary man/figures/aggregationaddmin.pdf |binary man/figures/aggregationaddpower.pdf |binary man/figures/aggregationaddsplitpower.pdf | 6 +- man/figures/aggregationbonusmalus.pdf |binary man/figures/aggregationgeo.pdf | 6 +- man/figures/aggregationharmo.pdf | 6 +- man/figures/aggregationmax.pdf |binary man/figures/aggregationmin.pdf |binary man/figures/aggregationmix.pdf | 6 +- man/figures/aggregationmult.pdf |binary man/figures/aggregationrevaddpower.pdf | 6 +- man/figures/aggregationrevaddsplitpower.pdf |binary man/figures/aggregationrevgeo.pdf | 6 +- man/figures/aggregationrevharmo.pdf | 6 +- man/plot.utility.aggregation.Rd | 8 +++ man/plot.utility.endnode.intpol1d.Rd | 4 + man/plot.utility.endnode.intpol2d.Rd | 8 +++ man/plot.utility.endnode.parfun1d.Rd | 4 + man/utility-package.Rd | 6 +- man/utility.get.attrib.names.Rd |only 32 files changed, 226 insertions(+), 108 deletions(-)
Title: R Client for the eBird Database of Bird Observations
Description: A programmatic client for the eBird database, including functions
for searching for bird observations by geographic location (latitude,
longitude), eBird hotspots, location identifiers, by notable sightings, by
region, and by taxonomic name.
Author: Rafael Maia [aut],
Scott Chamberlain [aut] (<https://orcid.org/0000-0003-1444-9135>),
Andy Teucher [aut],
Sebastian Pardo [aut, cre] (<https://orcid.org/0000-0002-4147-5796>)
Maintainer: Sebastian Pardo <sebpardo@gmail.com>
Diff between rebird versions 0.5.0 dated 2018-07-09 and 1.0.0 dated 2018-09-27
rebird-0.5.0/rebird/inst/vign/figure |only rebird-1.0.0/rebird/DESCRIPTION | 12 rebird-1.0.0/rebird/MD5 | 80 + rebird-1.0.0/rebird/NAMESPACE | 16 rebird-1.0.0/rebird/NEWS.md | 23 rebird-1.0.0/rebird/R/ebirdfreq.R | 13 rebird-1.0.0/rebird/R/ebirdgeo.R | 40 rebird-1.0.0/rebird/R/ebirdhotspot.R | 10 rebird-1.0.0/rebird/R/ebirdloc.R | 10 rebird-1.0.0/rebird/R/ebirdnotable.R | 63 - rebird-1.0.0/rebird/R/ebirdregion.R | 60 - rebird-1.0.0/rebird/R/ebirdregioncheck.R | 44 rebird-1.0.0/rebird/R/ebirdregioninfo.R |only rebird-1.0.0/rebird/R/ebirdtaxonomy.R | 18 rebird-1.0.0/rebird/R/nearestobs.R | 38 rebird-1.0.0/rebird/R/rebird-deprecated.R |only rebird-1.0.0/rebird/R/species_code.R |only rebird-1.0.0/rebird/R/sysdata.rda |only rebird-1.0.0/rebird/R/zzz.R | 36 rebird-1.0.0/rebird/README.md | 279 ++++-- rebird-1.0.0/rebird/inst/doc/rebird_vignette.Rmd | 564 +++++++----- rebird-1.0.0/rebird/inst/doc/rebird_vignette.html | 575 +++++++------ rebird-1.0.0/rebird/inst/vign/rebird_vignette.Rmd | 79 + rebird-1.0.0/rebird/inst/vign/rebird_vignette.md | 564 +++++++----- rebird-1.0.0/rebird/man/ebirdgeo.Rd | 29 rebird-1.0.0/rebird/man/ebirdhotspot.Rd | 6 rebird-1.0.0/rebird/man/ebirdloc.Rd | 6 rebird-1.0.0/rebird/man/ebirdnotable.Rd | 57 - rebird-1.0.0/rebird/man/ebirdregion.Rd | 50 - rebird-1.0.0/rebird/man/ebirdregioncheck.Rd | 17 rebird-1.0.0/rebird/man/ebirdregioninfo.Rd |only rebird-1.0.0/rebird/man/ebirdtaxonomy.Rd | 7 rebird-1.0.0/rebird/man/nearestobs.Rd | 33 rebird-1.0.0/rebird/man/rebird-deprecated.Rd |only rebird-1.0.0/rebird/man/species_code.Rd |only rebird-1.0.0/rebird/tests/testthat/helper.R |only rebird-1.0.0/rebird/tests/testthat/test-ebird_get.R |only rebird-1.0.0/rebird/tests/testthat/test-ebirdfreq.R | 2 rebird-1.0.0/rebird/tests/testthat/test-ebirdgeo.R | 2 rebird-1.0.0/rebird/tests/testthat/test-ebirdhotspot.R | 4 rebird-1.0.0/rebird/tests/testthat/test-ebirdregion.R | 11 rebird-1.0.0/rebird/tests/testthat/test-ebirdregioncheck.R | 27 rebird-1.0.0/rebird/tests/testthat/test-ebirdregioninfo.R |only rebird-1.0.0/rebird/tests/testthat/test-ebirdtaxonomy.R | 8 rebird-1.0.0/rebird/tests/testthat/test-nearestobs.R | 6 rebird-1.0.0/rebird/tests/testthat/test-species_code.R |only rebird-1.0.0/rebird/vignettes/rebird_vignette.Rmd | 564 +++++++----- 47 files changed, 2007 insertions(+), 1346 deletions(-)
Title: Estimate Procedure in Case of First Order Autocorrelation
Description: Solve first order autocorrelation problems using an iterative method. This procedure estimates both autocorrelation and beta coefficients recursively until we reach the convergence (8th decimal as default). The residuals are computed after estimating Beta using EGLS approach and Rho is estimated using the previous residuals.
Author: Stefano Spada [aut, cre],
Matteo Quartagno [ctb],
Marco Tamburini [ctb],
David Robinson [ctb]
Maintainer: Stefano Spada <lostefanospada@gmail.com>
Diff between orcutt versions 2.2 dated 2017-10-23 and 2.3 dated 2018-09-27
DESCRIPTION | 8 +-- MD5 | 10 ++-- R/cochrane.orcutt.R | 114 ++++++++++++++++++++++++++----------------------- inst/CITATION | 2 man/cochrane.orcutt.Rd | 5 +- man/orcutt-package.Rd | 4 - 6 files changed, 78 insertions(+), 65 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-06-29 1.0.10.11
2017-11-10 1.0.9.64
2017-01-23 1.0.5.12
Title: Read Text Documents into R
Description: A small collection of convenience tools for reading text documents into R.
Author: Tyler Rinker [aut, cre],
Bryan Goodrich [ctb]
Maintainer: Tyler Rinker <tyler.rinker@gmail.com>
Diff between textreadr versions 0.7.0 dated 2017-12-12 and 0.8.1 dated 2018-09-27
DESCRIPTION | 11 - MD5 | 38 ++-- NEWS | 15 + R/peek.R | 57 ++++--- R/read_dir_transcript.R | 4 R/read_document.R | 8 - R/read_pdf.R | 52 ++++++ R/utils.R | 21 ++ README.md | 296 ++++++++++++++++++++----------------- data/presidential_debates_2012.rda |binary inst/CITATION | 8 - inst/docs/McCune2002Choi2010.pdf |only inst/docs/trans5.xls |binary inst/extract_text_app |only man/as_transcript.Rd | 8 - man/peek.Rd | 4 man/read_dir.Rd | 4 man/read_dir_transcript.Rd | 11 - man/read_document.Rd | 7 man/read_pdf.Rd | 24 ++- man/read_transcript.Rd | 9 - 21 files changed, 374 insertions(+), 203 deletions(-)
Title: Smoothing Methods for Nonparametric Regression and Density
Estimation
Description: This is software linked to the book
'Applied Smoothing Techniques for Data Analysis -
The Kernel Approach with S-Plus Illustrations' Oxford University Press.
Author: Adrian Bowman and Adelchi Azzalini.
Ported to R by B. D. Ripley <ripley@stats.ox.ac.uk> up to version 2.0,
version 2.1 by Adrian Bowman and Adelchi Azzalini,
version 2.2 by Adrian Bowman.
Maintainer: Adrian Bowman <adrian.bowman@glasgow.ac.uk>
Diff between sm versions 2.2-5.5 dated 2018-05-06 and 2.2-5.6 dated 2018-09-27
ChangeLog | 2 ++ DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- R/density.r | 13 +++++++++---- R/zzz.R | 2 +- inst/CITATION | 8 ++++---- inst/scripts/bissell1.q | 7 ++----- inst/scripts/bissell2.q | 10 ++++------ inst/scripts/bissell3.q | 12 +++++++----- 9 files changed, 41 insertions(+), 37 deletions(-)
Title: Simulation of Fatigue Lifetimes
Description: Provides methods for simulation and analysis of a very general fatigue
lifetime model for (metal matrix) composite materials.
Author: Markus Baaske [aut, cre],
Felix Ballani [aut, ctb]
Maintainer: Markus Baaske <markus.baaske@uni-jena.de>
Diff between simLife versions 0.5 dated 2018-09-20 and 0.5.1 dated 2018-09-27
DESCRIPTION | 8 ++-- MD5 | 48 ++++++++++++------------ NEWS | 4 ++ R/densify.R | 83 ++++++++++++++++++++----------------------- R/simLife.R | 83 +++++++++++++++++++++++-------------------- R/times.R | 31 ++++++++++------ inst/examples/cylinder.R | 8 ++-- inst/examples/densify.R | 8 ++-- inst/examples/sim.R | 2 - inst/examples/simFailure.R | 6 +-- inst/examples/sphere.R | 10 +++-- inst/examples/woehler.R | 13 ++++-- man/areaCrit.Rd | 8 ++-- man/densifyCluster.Rd | 15 ++++--- man/getCylinderProjection.Rd | 8 ++-- man/getSpheroidProjection.Rd | 2 - man/showDensity.Rd | 2 - man/simCLuster.Rd | 16 ++++---- man/simCrackTime.Rd | 6 ++- man/simFracture.Rd | 6 +-- man/simTimes.Rd | 14 ++++--- man/woehler.Rd | 22 +++++++---- src/simLife.cpp | 60 ++++++++++++------------------- tests/cluster.R | 3 + tests/cylinderRsa.R | 2 - 25 files changed, 245 insertions(+), 223 deletions(-)
Title: Multi-Isotope Labeling for Metabolomics Analysis
Description: An efficient approach for fishing out the dual (or multiple)
isotope labeled analytes using dual labeling of metabolites for
metabolome analysis (DLEMMA) approach, described in Liron (2018) <doi:10.1021/acs.analchem.8b01644>.
Author: Yonghui Dong
Maintainer: Yonghui Dong <yonghui.dong@gmail.com>
Diff between Miso versions 0.1.4 dated 2018-08-30 and 0.1.5 dated 2018-09-27
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- R/Rresult.R | 43 ++++++++++++++++++++++++++++++++++++------- R/diso.R | 2 +- R/isoplot.R | 4 ++-- README.md | 2 +- man/Rresult.Rd | 4 +++- man/diso.Rd | 2 +- man/isoplot.Rd | 4 ++-- 9 files changed, 58 insertions(+), 27 deletions(-)
Title: Ridgeline Plots in 'ggplot2'
Description: Ridgeline plots provide a convenient way of visualizing changes in distributions over time or space. This package enables the creation of such plots in 'ggplot2'.
Author: Claus O. Wilke [cre, aut],
RStudio [cph] (Copyright for ggplot2 code copied to ggridges)
Maintainer: Claus O. Wilke <wilke@austin.utexas.edu>
Diff between ggridges versions 0.5.0 dated 2018-04-05 and 0.5.1 dated 2018-09-27
DESCRIPTION | 8 MD5 | 73 +++---- NAMESPACE | 9 NEWS | 8 R/geoms-gradient.R | 82 ++++++-- R/geoms.R | 104 +++++++--- R/geomsv.R | 3 R/ggridges.R | 1 R/position.R | 3 R/scale-.R | 4 R/scale-point.R | 59 +++++- R/scale-vline.R | 51 ++++- R/stats.R | 77 ++++++-- R/theme.R | 14 - TODO | 2 inst/doc/gallery.R | 109 +++++++---- inst/doc/gallery.Rmd | 109 +++++++---- inst/doc/gallery.html | 171 ++++++++++------- inst/doc/introduction.R | 99 ++++++---- inst/doc/introduction.Rmd | 99 ++++++---- inst/doc/introduction.html | 288 ++++++++++++++++-------------- man/geom_density_line.Rd | 6 man/geom_density_ridges.Rd | 26 +- man/geom_ridgeline.Rd | 7 man/geom_ridgeline_gradient.Rd | 12 - man/geom_vridgeline.Rd | 3 man/position_raincloud.Rd | 4 man/scale_discrete_manual.Rd | 8 man/scale_point.Rd | 39 +--- man/scale_vline.Rd | 25 +- man/stat_binline.Rd | 47 ++-- man/stat_density_ridges.Rd | 28 +- tests/figs |only tests/testthat/Rplots.pdf |binary tests/testthat/test_stat_density_ridges.R | 18 + vignettes/gallery.Rmd | 109 +++++++---- vignettes/introduction.Rmd | 99 ++++++---- 37 files changed, 1137 insertions(+), 667 deletions(-)
Title: Vehicular Emissions by Top-Down Methods
Description: Creates emissions for use in air quality models. Vehicular emissions
are estimated by a top-down approach, total emissions are calculated using the
statistical description of the fleet of vehicles, the emission is spatially
distributed according to satellite images or openstreetmap data
<https://www.openstreetmap.org> and then distributed temporarily
(Vara-Vela et al., 2016, <doi:10.5194/acp-16-777-2016>).
Author: Daniel Schuch [aut, cre] (<https://orcid.org/0000-0001-5977-4519>),
Sergio Ibarra-Espinosa [aut] (<https://orcid.org/0000-0002-3162-1905>)
Maintainer: Daniel Schuch <schuch@usp.br>
Diff between EmissV versions 0.664.7 dated 2018-06-19 and 0.664.9 dated 2018-09-27
DESCRIPTION | 17 +++++----- MD5 | 30 ++++++++++--------- NEWS.md | 7 ++++ R/areaSouce.R | 4 +- R/emission.R | 27 +++++++---------- R/lineSource.R | 49 ++++++++++++++++++++++++++----- R/streetDist.R | 58 ++++++++++++++++++++++++++++--------- R/totalvoc.R | 6 +-- R/vehicles.R | 30 +++++++++---------- inst/CITATION |only inst/extdata/dmsp_hi-res.tiff |only man/emission.Rd | 4 +- man/lineSource.Rd | 11 +++++-- man/streetDist.Rd | 41 +++++++++++++++++++++++--- man/vehicles.Rd | 30 +++++++++---------- tests/testthat/Rplots.pdf |binary tests/testthat/test-emission.R | 64 ++++++++++++++++++++--------------------- 17 files changed, 244 insertions(+), 134 deletions(-)
Title: Spatio-Temporal Generalised Linear Mixed Models for Areal Unit
Data
Description: Implements a class of spatio-temporal generalised linear mixed models for areal unit data, with inference in a Bayesian setting using Markov chain Monte Carlo (MCMC) simulation. The response variable can be binomial, Gaussian, or Poisson, but for some models only the binomial and Poisson data likelihoods are available. The spatio-temporal autocorrelation is modelled by random effects, which are assigned conditional autoregressive (CAR) style prior distributions. A number of different random effects structures are available, including Bernardinelli et al. (1995) <doi:10.1002/sim.4780142112>, Rushworth et al. (2014) <doi:10.1016/j.sste.2014.05.001> and Lee et al. (2016) <doi:10.1214/16-AOAS941>. Full details are given in the vignette accompanying this package. The creation of this package was supported by the Engineering and Physical Sciences Research Council (EPSRC) grant EP/J017442/1 and the Medical Research Council (MRC) grant MR/L022184/1.
Author: Duncan Lee, Alastair Rushworth and Gary Napier
Maintainer: Duncan Lee <Duncan.Lee@glasgow.ac.uk>
Diff between CARBayesST versions 2.5.2 dated 2018-04-17 and 3.0 dated 2018-09-27
CARBayesST-2.5.2/CARBayesST/vignettes/CARBayesST.bib |only CARBayesST-3.0/CARBayesST/DESCRIPTION | 15 CARBayesST-3.0/CARBayesST/MD5 | 108 CARBayesST-3.0/CARBayesST/NAMESPACE | 9 CARBayesST-3.0/CARBayesST/R/RcppExports.R | 243 + CARBayesST-3.0/CARBayesST/R/ST.CARadaptive.R | 8 CARBayesST-3.0/CARBayesST/R/ST.CARanova.R | 8 CARBayesST-3.0/CARBayesST/R/ST.CARar.R | 8 CARBayesST-3.0/CARBayesST/R/ST.CARclustrends.R |only CARBayesST-3.0/CARBayesST/R/ST.CARlinear.R | 8 CARBayesST-3.0/CARBayesST/R/ST.CARsepspatial.R | 6 CARBayesST-3.0/CARBayesST/R/binomial.CARadaptive.R | 129 - CARBayesST-3.0/CARBayesST/R/binomial.CARanova.R | 205 - CARBayesST-3.0/CARBayesST/R/binomial.CARar.R | 157 - CARBayesST-3.0/CARBayesST/R/binomial.CARclustrends.R |only CARBayesST-3.0/CARBayesST/R/binomial.CARlinear.R | 186 - CARBayesST-3.0/CARBayesST/R/binomial.CARlocalised.R | 90 CARBayesST-3.0/CARBayesST/R/binomial.CARsepspatial.R | 196 - CARBayesST-3.0/CARBayesST/R/common.functions.R | 461 ++- CARBayesST-3.0/CARBayesST/R/gaussian.CARadaptive.R | 124 CARBayesST-3.0/CARBayesST/R/gaussian.CARanova.R | 167 - CARBayesST-3.0/CARBayesST/R/gaussian.CARar.R | 156 - CARBayesST-3.0/CARBayesST/R/gaussian.CARlinear.R | 185 - CARBayesST-3.0/CARBayesST/R/poisson.CARadaptive.R | 125 CARBayesST-3.0/CARBayesST/R/poisson.CARanova.R | 184 - CARBayesST-3.0/CARBayesST/R/poisson.CARar.R | 157 - CARBayesST-3.0/CARBayesST/R/poisson.CARclustrends.R |only CARBayesST-3.0/CARBayesST/R/poisson.CARlinear.R | 176 - CARBayesST-3.0/CARBayesST/R/poisson.CARlocalised.R | 84 CARBayesST-3.0/CARBayesST/R/poisson.CARsepspatial.R | 191 - CARBayesST-3.0/CARBayesST/R/print.CARBayesST.R | 25 CARBayesST-3.0/CARBayesST/R/residuals.CARBayesST.R | 7 CARBayesST-3.0/CARBayesST/build/vignette.rds |binary CARBayesST-3.0/CARBayesST/inst/doc/CARBayesST.R | 114 CARBayesST-3.0/CARBayesST/inst/doc/CARBayesST.Rnw | 476 ++- CARBayesST-3.0/CARBayesST/inst/doc/CARBayesST.pdf |binary CARBayesST-3.0/CARBayesST/man/CARBayesST-package.Rd | 27 CARBayesST-3.0/CARBayesST/man/ST.CARadaptive.Rd | 218 - CARBayesST-3.0/CARBayesST/man/ST.CARanova.Rd | 236 - CARBayesST-3.0/CARBayesST/man/ST.CARar.Rd | 232 - CARBayesST-3.0/CARBayesST/man/ST.CARclustrends.Rd |only CARBayesST-3.0/CARBayesST/man/ST.CARlinear.Rd | 234 - CARBayesST-3.0/CARBayesST/man/ST.CARlocalised.Rd | 199 - CARBayesST-3.0/CARBayesST/man/ST.CARsepspatial.Rd | 225 - CARBayesST-3.0/CARBayesST/man/coef.CARBayesST.Rd | 2 CARBayesST-3.0/CARBayesST/man/fitted.CARBayesST.Rd | 2 CARBayesST-3.0/CARBayesST/man/logLik.CARBayesST.Rd | 2 CARBayesST-3.0/CARBayesST/man/model.matrix.CARBayesST.Rd | 2 CARBayesST-3.0/CARBayesST/man/print.CARBayesST.Rd | 5 CARBayesST-3.0/CARBayesST/man/residuals.CARBayesST.Rd | 8 CARBayesST-3.0/CARBayesST/src/CARBayesST.cpp | 1906 +++++++++++++-- CARBayesST-3.0/CARBayesST/src/RcppExports.cpp | 1173 +++++++-- CARBayesST-3.0/CARBayesST/vignettes/CARBayesST.Rnw | 476 ++- CARBayesST-3.0/CARBayesST/vignettes/JSS2728.bib |only CARBayesST-3.0/CARBayesST/vignettes/SMRmap.png |binary CARBayesST-3.0/CARBayesST/vignettes/figsim1.png |binary CARBayesST-3.0/CARBayesST/vignettes/salesmap.png |binary CARBayesST-3.0/CARBayesST/vignettes/salesmapest.png |binary 58 files changed, 5626 insertions(+), 3329 deletions(-)
Title: Interpolate Data for Smooth Animations
Description: In order to create smooth animation between states of data,
tweening is necessary. This package provides a range of functions for
creating tweened data that can be used as basis for animation. Furthermore
it adds a number of vectorized interpolaters for common R data
types such as numeric, date and colour.
Author: Thomas Lin Pedersen [aut, cre]
Maintainer: Thomas Lin Pedersen <thomasp85@gmail.com>
Diff between tweenr versions 0.1.5 dated 2016-10-10 and 1.0.0 dated 2018-09-27
tweenr-0.1.5/tweenr/R/interpolate.R |only tweenr-0.1.5/tweenr/src/stateInterpolate.cpp |only tweenr-1.0.0/tweenr/DESCRIPTION | 26 - tweenr-1.0.0/tweenr/LICENSE |only tweenr-1.0.0/tweenr/MD5 | 85 ++++- tweenr-1.0.0/tweenr/NAMESPACE | 25 + tweenr-1.0.0/tweenr/R/RcppExports.R | 100 ++++++- tweenr-1.0.0/tweenr/R/aaa.R | 223 ++++++++------- tweenr-1.0.0/tweenr/R/display_ease.R | 15 - tweenr-1.0.0/tweenr/R/interpolate_along.R |only tweenr-1.0.0/tweenr/R/interpolate_at.R |only tweenr-1.0.0/tweenr/R/interpolate_element.R |only tweenr-1.0.0/tweenr/R/interpolate_fill.R |only tweenr-1.0.0/tweenr/R/interpolate_state.R |only tweenr-1.0.0/tweenr/R/tween.R | 119 +++----- tweenr-1.0.0/tweenr/R/tween_along.R |only tweenr-1.0.0/tweenr/R/tween_appear.R | 42 +- tweenr-1.0.0/tweenr/R/tween_at.R |only tweenr-1.0.0/tweenr/R/tween_colour.R | 40 +- tweenr-1.0.0/tweenr/R/tween_components.R |only tweenr-1.0.0/tweenr/R/tween_constant.R | 32 -- tweenr-1.0.0/tweenr/R/tween_date.R | 40 +- tweenr-1.0.0/tweenr/R/tween_datetime.R | 40 +- tweenr-1.0.0/tweenr/R/tween_elements.R | 89 +++--- tweenr-1.0.0/tweenr/R/tween_events.R |only tweenr-1.0.0/tweenr/R/tween_fill.R |only tweenr-1.0.0/tweenr/R/tween_numeric.R | 40 +- tweenr-1.0.0/tweenr/R/tween_state.R |only tweenr-1.0.0/tweenr/R/tween_states.R | 138 +++++---- tweenr-1.0.0/tweenr/R/tweenr_package.R | 13 tweenr-1.0.0/tweenr/README.md | 247 +++++------------ tweenr-1.0.0/tweenr/man/display_ease.Rd | 29 -- tweenr-1.0.0/tweenr/man/dot-complete_states.Rd |only tweenr-1.0.0/tweenr/man/dot-get_last_frame.Rd |only tweenr-1.0.0/tweenr/man/dot-max_id.Rd |only tweenr-1.0.0/tweenr/man/figures |only tweenr-1.0.0/tweenr/man/reexports.Rd |only tweenr-1.0.0/tweenr/man/tween.Rd | 35 +- tweenr-1.0.0/tweenr/man/tween_along.Rd |only tweenr-1.0.0/tweenr/man/tween_appear.Rd | 6 tweenr-1.0.0/tweenr/man/tween_at.Rd |only tweenr-1.0.0/tweenr/man/tween_components.Rd |only tweenr-1.0.0/tweenr/man/tween_elements.Rd | 8 tweenr-1.0.0/tweenr/man/tween_events.Rd |only tweenr-1.0.0/tweenr/man/tween_fill.Rd |only tweenr-1.0.0/tweenr/man/tween_state.Rd |only tweenr-1.0.0/tweenr/man/tween_states.Rd | 8 tweenr-1.0.0/tweenr/man/tweenr-package.Rd | 33 +- tweenr-1.0.0/tweenr/src/RcppExports.cpp | 357 ++++++++++++++++++++++++- tweenr-1.0.0/tweenr/src/easing.c | 248 ++++++++--------- tweenr-1.0.0/tweenr/src/easing.h | 104 +++---- tweenr-1.0.0/tweenr/src/interpolators.cpp |only tweenr-1.0.0/tweenr/tests |only 53 files changed, 1280 insertions(+), 862 deletions(-)
Title: Read 'IPUMS' Extract Files
Description: An easy way to import census, survey and geographic data provided by 'IPUMS'
into R plus tools to help use the associated metadata to make analysis easier. 'IPUMS'
data describing 1.4 billion individuals drawn from over 750 censuses and surveys is
available free of charge from our website <https://ipums.org>.
Author: Greg Freedman Ellis [aut, cre],
Derek Burk [ctb],
Joe Grover [ctb],
Minnesota Population Center [cph]
Maintainer: Greg Freedman Ellis <gfellis@umn.edu>
Diff between ipumsr versions 0.2.0 dated 2018-04-20 and 0.3.0 dated 2018-09-27
ipumsr-0.2.0/ipumsr/man/figures |only ipumsr-0.2.0/ipumsr/src/read_hier_list.cpp |only ipumsr-0.2.0/ipumsr/src/read_hier_long.cpp |only ipumsr-0.3.0/ipumsr/DESCRIPTION | 16 ipumsr-0.3.0/ipumsr/MD5 | 164 ipumsr-0.3.0/ipumsr/NAMESPACE | 13 ipumsr-0.3.0/ipumsr/NEWS.md | 35 ipumsr-0.3.0/ipumsr/R/RcppExports.R | 12 ipumsr-0.3.0/ipumsr/R/bind_rows.r |only ipumsr-0.3.0/ipumsr/R/callbacks.r |only ipumsr-0.3.0/ipumsr/R/ddi_print.r | 52 ipumsr-0.3.0/ipumsr/R/ddi_read.r | 10 ipumsr-0.3.0/ipumsr/R/examples.r | 70 ipumsr-0.3.0/ipumsr/R/import.r | 212 - ipumsr-0.3.0/ipumsr/R/ipums_info.r | 442 +- ipumsr-0.3.0/ipumsr/R/lbl_pillar.r |only ipumsr-0.3.0/ipumsr/R/list_files.r | 154 ipumsr-0.3.0/ipumsr/R/micro_read.r | 148 ipumsr-0.3.0/ipumsr/R/micro_read_chunked.r |only ipumsr-0.3.0/ipumsr/R/nhgis_read.r | 514 +- ipumsr-0.3.0/ipumsr/R/proj_config.r | 204 - ipumsr-0.3.0/ipumsr/R/shape_join.r | 688 +-- ipumsr-0.3.0/ipumsr/R/shape_read.r | 81 ipumsr-0.3.0/ipumsr/R/terra_read.r | 778 +-- ipumsr-0.3.0/ipumsr/R/utils.r | 48 ipumsr-0.3.0/ipumsr/R/viewer.r | 450 +- ipumsr-0.3.0/ipumsr/R/web_url.r | 280 - ipumsr-0.3.0/ipumsr/README.md | 248 - ipumsr-0.3.0/ipumsr/build/vignette.rds |binary ipumsr-0.3.0/ipumsr/inst/WORDLIST | 224 - ipumsr-0.3.0/ipumsr/inst/doc/ipums-bigdata.R |only ipumsr-0.3.0/ipumsr/inst/doc/ipums-bigdata.Rmd |only ipumsr-0.3.0/ipumsr/inst/doc/ipums-bigdata.html |only ipumsr-0.3.0/ipumsr/inst/doc/ipums-cps.Rmd | 12 ipumsr-0.3.0/ipumsr/inst/doc/ipums-cps.html | 156 ipumsr-0.3.0/ipumsr/inst/doc/ipums-geography.Rmd | 1108 ++--- ipumsr-0.3.0/ipumsr/inst/doc/ipums-geography.html | 471 +- ipumsr-0.3.0/ipumsr/inst/doc/ipums-nhgis.Rmd | 652 +-- ipumsr-0.3.0/ipumsr/inst/doc/ipums-nhgis.html | 96 ipumsr-0.3.0/ipumsr/inst/doc/ipums-terra.Rmd | 636 +-- ipumsr-0.3.0/ipumsr/inst/doc/ipums-terra.html | 58 ipumsr-0.3.0/ipumsr/inst/doc/ipums.Rmd | 564 +- ipumsr-0.3.0/ipumsr/inst/doc/ipums.html | 177 ipumsr-0.3.0/ipumsr/inst/doc/value-labels.R | 4 ipumsr-0.3.0/ipumsr/inst/doc/value-labels.Rmd | 18 ipumsr-0.3.0/ipumsr/inst/doc/value-labels.html | 606 +-- ipumsr-0.3.0/ipumsr/inst/extdata/cps_00006.xml | 1100 ++--- ipumsr-0.3.0/ipumsr/inst/extdata/cps_00010.xml | 1142 ++--- ipumsr-0.3.0/ipumsr/inst/extdata/cps_00015.xml | 2384 ++++++------ ipumsr-0.3.0/ipumsr/man/ipums_bind_rows.Rd |only ipumsr-0.3.0/ipumsr/man/ipums_callback.Rd |only ipumsr-0.3.0/ipumsr/man/ipums_collect.Rd |only ipumsr-0.3.0/ipumsr/man/lbl.Rd | 1 ipumsr-0.3.0/ipumsr/man/lbl_add.Rd | 1 ipumsr-0.3.0/ipumsr/man/lbl_clean.Rd | 1 ipumsr-0.3.0/ipumsr/man/lbl_collapse.Rd | 1 ipumsr-0.3.0/ipumsr/man/lbl_na_if.Rd | 1 ipumsr-0.3.0/ipumsr/man/lbl_relabel.Rd | 1 ipumsr-0.3.0/ipumsr/man/read_ipums_codebook.Rd | 1 ipumsr-0.3.0/ipumsr/man/read_ipums_ddi.Rd | 6 ipumsr-0.3.0/ipumsr/man/read_ipums_micro.Rd | 19 ipumsr-0.3.0/ipumsr/man/read_ipums_micro_chunked.Rd |only ipumsr-0.3.0/ipumsr/man/read_ipums_sf.Rd | 25 ipumsr-0.3.0/ipumsr/man/read_nhgis.Rd | 12 ipumsr-0.3.0/ipumsr/man/read_terra_area.Rd | 20 ipumsr-0.3.0/ipumsr/man/read_terra_micro.Rd | 8 ipumsr-0.3.0/ipumsr/man/read_terra_raster.Rd | 4 ipumsr-0.3.0/ipumsr/man/reexports.Rd | 12 ipumsr-0.3.0/ipumsr/man/zap_ipums_attributes.Rd | 1 ipumsr-0.3.0/ipumsr/src/RcppExports.cpp | 40 ipumsr-0.3.0/ipumsr/src/set_attributes.cpp | 12 ipumsr-0.3.0/ipumsr/tests/testthat.R | 8 ipumsr-0.3.0/ipumsr/tests/testthat/test_ipums_bind_rows.r |only ipumsr-0.3.0/ipumsr/tests/testthat/test_ipums_info.r | 84 ipumsr-0.3.0/ipumsr/tests/testthat/test_lbls.r | 452 +- ipumsr-0.3.0/ipumsr/tests/testthat/test_list_files.r | 260 - ipumsr-0.3.0/ipumsr/tests/testthat/test_lower_names.R |only ipumsr-0.3.0/ipumsr/tests/testthat/test_micro_chunked.r |only ipumsr-0.3.0/ipumsr/tests/testthat/test_nhgis.r | 316 - ipumsr-0.3.0/ipumsr/tests/testthat/test_parse_manual_code.r | 58 ipumsr-0.3.0/ipumsr/tests/testthat/test_select_style.r | 286 - ipumsr-0.3.0/ipumsr/tests/testthat/test_shape_join.r | 224 - ipumsr-0.3.0/ipumsr/tests/testthat/test_terra.r | 6 ipumsr-0.3.0/ipumsr/tests/testthat/test_viewer.r | 15 ipumsr-0.3.0/ipumsr/tools/spellcheck.r | 2 ipumsr-0.3.0/ipumsr/vignettes/ipums-bigdata.Rmd |only ipumsr-0.3.0/ipumsr/vignettes/ipums-cps.Rmd | 12 ipumsr-0.3.0/ipumsr/vignettes/ipums-geography.Rmd | 1108 ++--- ipumsr-0.3.0/ipumsr/vignettes/ipums-nhgis.Rmd | 652 +-- ipumsr-0.3.0/ipumsr/vignettes/ipums-terra.Rmd | 636 +-- ipumsr-0.3.0/ipumsr/vignettes/ipums.Rmd | 564 +- ipumsr-0.3.0/ipumsr/vignettes/value-labels.Rmd | 18 92 files changed, 9431 insertions(+), 9463 deletions(-)
Title: Hydrology and Climate Forecasting
Description: Focuses on data processing and visualization in hydrology and
climate forecasting. Main function includes data extraction, data downscaling,
data resampling, gap filler of precipitation, bias correction of forecasting
data, flexible time series plot, and spatial map generation. It is a good pre-
processing and post-processing tool for hydrological and hydraulic modellers.
Author: Yuanchao Xu [aut, cre]
Maintainer: Yuanchao Xu <xuyuanchao37@gmail.com>
Diff between hyfo versions 1.3.9 dated 2017-03-19 and 1.4.0 dated 2018-09-27
DESCRIPTION | 10 +++++----- MD5 | 30 +++++++++++++++--------------- NEWS | 8 ++++++++ R/biasCorrect(generic).R | 7 ++++++- R/multi-biasCorrect(generic).R | 7 +++++-- build/vignette.rds |binary inst/doc/hyfo.pdf |binary man/applyBiasFactor.Rd | 6 ++++-- man/biasCorrect.Rd | 19 +++++++++++-------- man/collectData.Rd | 3 ++- man/extractPeriod.Rd | 4 ++-- man/getAnnual.Rd | 7 ++++--- man/getMeanPreci.Rd | 5 +++-- man/getPreciBar.Rd | 9 +++++---- man/getSpatialMap_mat.Rd | 6 +++--- man/plotTS.Rd | 5 +++-- 16 files changed, 76 insertions(+), 50 deletions(-)
Title: Regularization Paths for Regression Models with Grouped
Covariates
Description: Efficient algorithms for fitting the regularization path of linear
regression, GLM, and Cox regression models with grouped penalties. This
includes group selection methods such as group lasso, group MCP, and
group SCAD as well as bi-level selection methods such as the group
exponential lasso, the composite MCP, and the group bridge.
Author: Patrick Breheny [aut, cre] (<https://orcid.org/000-0002-0650-1119>),
Yaohui Zeng [ctb]
Maintainer: Patrick Breheny <patrick-breheny@uiowa.edu>
Diff between grpreg versions 3.1-4 dated 2018-06-15 and 3.2-0 dated 2018-09-27
grpreg-3.1-4/grpreg/R/cv.grpreg.R |only grpreg-3.1-4/grpreg/R/summary.cv.grpreg.R |only grpreg-3.1-4/grpreg/R/summary.cv.grpsurv.R |only grpreg-3.1-4/grpreg/inst/doc/penalties.R |only grpreg-3.1-4/grpreg/inst/doc/penalties.Rnw |only grpreg-3.1-4/grpreg/inst/doc/penalties.pdf |only grpreg-3.1-4/grpreg/inst/doc/quick-start.R |only grpreg-3.1-4/grpreg/inst/doc/quick-start.Rnw |only grpreg-3.1-4/grpreg/inst/doc/quick-start.pdf |only grpreg-3.1-4/grpreg/man/birthwt.grpreg.Rd |only grpreg-3.1-4/grpreg/man/cv.grpreg.Rd |only grpreg-3.1-4/grpreg/man/cv.grpsurv.Rd |only grpreg-3.1-4/grpreg/man/logLik.grpreg.Rd |only grpreg-3.1-4/grpreg/man/plot.cv.grpreg.Rd |only grpreg-3.1-4/grpreg/man/plot.grpreg.Rd |only grpreg-3.1-4/grpreg/man/predict.grpsurv.Rd |only grpreg-3.1-4/grpreg/man/select.grpreg.Rd |only grpreg-3.1-4/grpreg/man/summary.cv.grpreg.Rd |only grpreg-3.1-4/grpreg/src/gdfit_binomial.c |only grpreg-3.1-4/grpreg/src/gdfit_poisson.c |only grpreg-3.1-4/grpreg/vignettes/penalties.Rnw |only grpreg-3.1-4/grpreg/vignettes/quick-start.Rnw |only grpreg-3.2-0/grpreg/DESCRIPTION | 33 ++++-- grpreg-3.2-0/grpreg/MD5 | 93 +++++++++---------- grpreg-3.2-0/grpreg/NAMESPACE | 1 grpreg-3.2-0/grpreg/NEWS | 60 +++++++----- grpreg-3.2-0/grpreg/R/cv-grpreg.R |only grpreg-3.2-0/grpreg/R/cv.grpsurv.R | 35 ++++--- grpreg-3.2-0/grpreg/R/gBridge.R | 8 - grpreg-3.2-0/grpreg/R/grpreg.R | 9 - grpreg-3.2-0/grpreg/R/grpsurv.R | 20 +--- grpreg-3.2-0/grpreg/R/logLik.R | 12 +- grpreg-3.2-0/grpreg/R/loss.R | 12 +- grpreg-3.2-0/grpreg/R/plot.cv.R | 35 ++++--- grpreg-3.2-0/grpreg/R/se-grpsurv.R |only grpreg-3.2-0/grpreg/R/summary-cv-grpreg.R |only grpreg-3.2-0/grpreg/README.md | 10 +- grpreg-3.2-0/grpreg/build/vignette.rds |binary grpreg-3.2-0/grpreg/inst/doc/getting-started.R |only grpreg-3.2-0/grpreg/inst/doc/getting-started.html |only grpreg-3.2-0/grpreg/inst/doc/getting-started.rmd |only grpreg-3.2-0/grpreg/inst/tests/basic-functionality.R | 4 grpreg-3.2-0/grpreg/inst/tests/cv-grpsurv.R |only grpreg-3.2-0/grpreg/inst/tests/cv.R | 22 ++-- grpreg-3.2-0/grpreg/inst/tests/extra-features.R | 12 ++ grpreg-3.2-0/grpreg/inst/tests/surv-torture.R |only grpreg-3.2-0/grpreg/man/Birthwt.Rd | 5 - grpreg-3.2-0/grpreg/man/auc.Rd | 6 - grpreg-3.2-0/grpreg/man/birthwt-grpreg.Rd |only grpreg-3.2-0/grpreg/man/cv-grpreg.Rd |only grpreg-3.2-0/grpreg/man/gBridge.Rd | 2 grpreg-3.2-0/grpreg/man/grpreg-package.Rd | 26 +++-- grpreg-3.2-0/grpreg/man/grpreg.Rd | 88 ++++++++++------- grpreg-3.2-0/grpreg/man/grpsurv.Rd | 22 ++-- grpreg-3.2-0/grpreg/man/logLik-grpreg.Rd |only grpreg-3.2-0/grpreg/man/plot-cv-grpreg.Rd |only grpreg-3.2-0/grpreg/man/plot-grpreg.Rd |only grpreg-3.2-0/grpreg/man/plot-grpsurv-func.Rd |only grpreg-3.2-0/grpreg/man/predict-grpsurv.Rd |only grpreg-3.2-0/grpreg/man/predict.Rd | 12 +- grpreg-3.2-0/grpreg/man/select-grpreg.Rd |only grpreg-3.2-0/grpreg/man/summary-cv-grpreg.Rd |only grpreg-3.2-0/grpreg/src/gdfit_gaussian.c | 16 +-- grpreg-3.2-0/grpreg/src/gdfit_glm.c |only grpreg-3.2-0/grpreg/src/grpreg_init.c | 23 +++- grpreg-3.2-0/grpreg/src/lcdfit_glm.c |only grpreg-3.2-0/grpreg/vignettes/getting-started.rmd |only grpreg-3.2-0/grpreg/vignettes/vignette.css |only grpreg-3.2-0/grpreg/vignettes/web |only 69 files changed, 325 insertions(+), 241 deletions(-)
Title: Help for Writing Unit Tests Based on Function Examples
Description: Take the examples written in your documentation of functions and
use them to create shells (skeletons which must be manually completed by
the user) of test files to be tested with the 'testthat' package.
Author: Rory Nolan [aut, cre] (<https://orcid.org/0000-0002-5239-4043>),
Sergi Padilla-Parra [ths] (<https://orcid.org/0000-0002-8010-9481>),
Thomas Quinn [rev] (<https://orcid.org/0000-0003-0286-6329>),
Laurent Gatto [rev] (<https://orcid.org/0000-0002-1520-2268>)
Maintainer: Rory Nolan <rorynoolan@gmail.com>
Diff between exampletestr versions 1.3.1 dated 2018-07-09 and 1.4.0 dated 2018-09-27
exampletestr-1.3.1/exampletestr/inst/doc/exampletestr.R |only exampletestr-1.3.1/exampletestr/inst/doc/exampletestr.Rmd |only exampletestr-1.3.1/exampletestr/inst/doc/exampletestr.html |only exampletestr-1.3.1/exampletestr/man/construct_expect_equal.Rd |only exampletestr-1.3.1/exampletestr/man/extract_examples.Rd |only exampletestr-1.3.1/exampletestr/man/extract_examples_rd.Rd |only exampletestr-1.3.1/exampletestr/man/extract_expressions.Rd |only exampletestr-1.3.1/exampletestr/man/make_test_shell.Rd |only exampletestr-1.3.1/exampletestr/man/test-shells.Rd |only exampletestr-1.3.1/exampletestr/man/text_parse_error.Rd |only exampletestr-1.3.1/exampletestr/vignettes/exampletestr.Rmd |only exampletestr-1.4.0/exampletestr/DESCRIPTION | 46 - exampletestr-1.4.0/exampletestr/MD5 | 45 - exampletestr-1.4.0/exampletestr/NAMESPACE | 6 exampletestr-1.4.0/exampletestr/NEWS.md | 43 - exampletestr-1.4.0/exampletestr/R/exemplar.R | 353 ++++++---- exampletestr-1.4.0/exampletestr/R/utils.R | 144 +++- exampletestr-1.4.0/exampletestr/build/vignette.rds |binary exampletestr-1.4.0/exampletestr/inst/WORDLIST |only exampletestr-1.4.0/exampletestr/inst/doc/one-file-at-a-time.R |only exampletestr-1.4.0/exampletestr/inst/doc/one-file-at-a-time.Rmd |only exampletestr-1.4.0/exampletestr/inst/doc/one-file-at-a-time.html |only exampletestr-1.4.0/exampletestr/inst/doc/one-function-at-a-time.R |only exampletestr-1.4.0/exampletestr/inst/doc/one-function-at-a-time.Rmd |only exampletestr-1.4.0/exampletestr/inst/doc/one-function-at-a-time.html |only exampletestr-1.4.0/exampletestr/inst/doc/whole-package.R |only exampletestr-1.4.0/exampletestr/inst/doc/whole-package.Rmd |only exampletestr-1.4.0/exampletestr/inst/doc/whole-package.html |only exampletestr-1.4.0/exampletestr/inst/extdata/goodbye.R |only exampletestr-1.4.0/exampletestr/inst/extdata/hello.R |only exampletestr-1.4.0/exampletestr/man/figures |only exampletestr-1.4.0/exampletestr/man/make-test-shells.Rd |only exampletestr-1.4.0/exampletestr/tests/spelling.R |only exampletestr-1.4.0/exampletestr/tests/testthat/test-exemplar.R | 346 ++++++--- exampletestr-1.4.0/exampletestr/tests/testthat/test-utils.R | 22 exampletestr-1.4.0/exampletestr/vignettes/one-file-at-a-time.Rmd |only exampletestr-1.4.0/exampletestr/vignettes/one-function-at-a-time.Rmd |only exampletestr-1.4.0/exampletestr/vignettes/whole-package.Rmd |only 38 files changed, 687 insertions(+), 318 deletions(-)
Title: Arrange Elements on the R's Drawing Area or Inside the
PowerPoint's Slide
Description: Create complicated drawing areas for multiple elements by combining much simpler layouts. It is an extended version of layout function from the 'graphics' package, but it also works with 'grid' graphics. It also supports arranging elements inside 'PowerPoint' slides created using the 'officer' package.
Author: Zygmunt Zawadzki [aut, cre]
Maintainer: Zygmunt Zawadzki <zygmunt@zstat.pl>
Diff between customLayout versions 0.1.0 dated 2018-09-12 and 0.2.0 dated 2018-09-27
customLayout-0.1.0/customLayout/R/customLayout.R |only customLayout-0.1.0/customLayout/man/layColBind.Rd |only customLayout-0.1.0/customLayout/man/layCreate.Rd |only customLayout-0.1.0/customLayout/man/layGrid.Rd |only customLayout-0.1.0/customLayout/man/layRowBind.Rd |only customLayout-0.1.0/customLayout/man/laySet.Rd |only customLayout-0.1.0/customLayout/man/layShow.Rd |only customLayout-0.1.0/customLayout/man/laySplitField.Rd |only customLayout-0.2.0/customLayout/DESCRIPTION | 19 - customLayout-0.2.0/customLayout/MD5 | 83 +++-- customLayout-0.2.0/customLayout/NAMESPACE | 15 customLayout-0.2.0/customLayout/R/Layout.R | 162 +++++----- customLayout-0.2.0/customLayout/R/flextable.R |only customLayout-0.2.0/customLayout/R/officer.R |only customLayout-0.2.0/customLayout/R/splitField.R | 35 +- customLayout-0.2.0/customLayout/R/utils.R | 28 + customLayout-0.2.0/customLayout/README.md | 77 ++-- customLayout-0.2.0/customLayout/build |only customLayout-0.2.0/customLayout/inst |only customLayout-0.2.0/customLayout/man/figures/README-base-1.png |binary customLayout-0.2.0/customLayout/man/figures/README-base-2.png |binary customLayout-0.2.0/customLayout/man/figures/README-combine-1.png |binary customLayout-0.2.0/customLayout/man/figures/README-complicated-1.png |binary customLayout-0.2.0/customLayout/man/figures/README-complicated-2.png |binary customLayout-0.2.0/customLayout/man/figures/README-example-1.png |binary customLayout-0.2.0/customLayout/man/figures/README-examplegrid-1.png |binary customLayout-0.2.0/customLayout/man/figures/README-split-1.png |binary customLayout-0.2.0/customLayout/man/figures/README-split-2.png |binary customLayout-0.2.0/customLayout/man/figures/README-split-3.png |binary customLayout-0.2.0/customLayout/man/figures/officer-text.png |only customLayout-0.2.0/customLayout/man/lay_bind_col.Rd |only customLayout-0.2.0/customLayout/man/lay_bind_row.Rd |only customLayout-0.2.0/customLayout/man/lay_grid.Rd |only customLayout-0.2.0/customLayout/man/lay_new.Rd |only customLayout-0.2.0/customLayout/man/lay_set.Rd |only customLayout-0.2.0/customLayout/man/lay_show.Rd |only customLayout-0.2.0/customLayout/man/lay_split_field.Rd |only customLayout-0.2.0/customLayout/man/phl_adjust_table.Rd |only customLayout-0.2.0/customLayout/man/phl_calc_fontsize.Rd |only customLayout-0.2.0/customLayout/man/phl_layout.Rd |only customLayout-0.2.0/customLayout/man/phl_with_flextable.Rd |only customLayout-0.2.0/customLayout/man/phl_with_gg.Rd |only customLayout-0.2.0/customLayout/man/phl_with_plot.Rd |only customLayout-0.2.0/customLayout/man/phl_with_table.Rd |only customLayout-0.2.0/customLayout/man/phl_with_text.Rd |only customLayout-0.2.0/customLayout/tests/testthat/test-basic.R | 28 - customLayout-0.2.0/customLayout/tests/testthat/test-flextable.R |only customLayout-0.2.0/customLayout/tests/testthat/test-officer.R |only customLayout-0.2.0/customLayout/tests/testthat/test-reps-functions.R | 2 customLayout-0.2.0/customLayout/tests/testthat/test-split-field.R | 8 customLayout-0.2.0/customLayout/vignettes |only 51 files changed, 279 insertions(+), 178 deletions(-)
Title: Clients to the 'Web of Science' and 'InCites' APIs
Description: An R client to the 'Web of Science' and 'InCites'
<https://clarivate.com/products/data-integration/> web services, which
allow you to programmatically download publication and citation data
indexed in the 'Web of Science' and 'InCites' databases.
Author: Christopher Baker [aut, cre]
Maintainer: Christopher Baker <chriscrewbaker@gmail.com>
Diff between wosr versions 0.1.2 dated 2018-07-27 and 0.2.0 dated 2018-09-27
DESCRIPTION | 8 LICENSE | 4 MD5 | 71 +++--- NAMESPACE | 24 +- NEWS.md | 57 +++-- R/apply.R |only R/auth.R | 141 +++++++------ R/data-frame-wos.R | 194 +++++++++--------- R/download-wos.R | 168 +++++++-------- R/enfore-schema.R | 63 +++-- R/io.R | 177 ++++++++-------- R/package.R | 12 - R/parse-wos.R | 334 +++++++++++++++---------------- R/print.R | 22 +- R/process-incites.R | 58 ++--- R/process-wos.R | 193 ++++++++---------- R/pull-incites.R | 222 ++++++++++---------- R/pull-wos.R | 206 +++++++++---------- R/query-wos.R | 214 ++++++++++---------- R/sysdata.rda |binary R/utils.R | 54 ++--- README.md | 340 ++++++++++++++++---------------- inst/site/build-site.R | 88 ++++---- inst/site/vignettes/faqs.Rmd | 118 +++++------ inst/site/vignettes/getting-started.Rmd | 270 ++++++++++++------------- man/auth.Rd | 72 +++--- man/pull_incites.Rd | 106 ++++----- man/pull_wos.Rd | 189 ++++++++--------- man/pull_wos_apply.Rd |only man/query_wos.Rd | 101 ++++----- man/query_wos_apply.Rd |only man/read_wos_data.Rd | 63 ++--- man/wosr.Rd | 20 - man/write_wos_data.Rd | 71 +++--- tests/testthat.R | 8 tests/testthat/helpers.R | 14 - tests/testthat/test-incites.R | 26 +- tests/testthat/test-wos.R | 119 +++++++---- 38 files changed, 1950 insertions(+), 1877 deletions(-)
Title: Variable Importance Plots
Description: A general framework for constructing variable importance plots from
various types machine learning models in R. Aside from some standard model-
based variable importance measures, this package also provides a novel
approach based on partial dependence plots (PDPs) and individual conditional
expectation (ICE) curves as described in Greenwell et al. (2018)
<arXiv:1805.04755>.
Author: Brandon Greenwell [aut, cre] (<https://orcid.org/0000-0002-8120-0084>),
Brad Boehmke [aut] (<https://orcid.org/0000-0002-3611-8516>),
Bernie Gray [aut]
Maintainer: Brandon Greenwell <greenwell.brandon@gmail.com>
Diff between vip versions 0.1.0 dated 2018-06-15 and 0.1.1 dated 2018-09-27
vip-0.1.0/vip/tests/testthat/test-vi-model.R |only vip-0.1.0/vip/tools/README-example-rf-1.png |only vip-0.1.0/vip/tools/logo-vip.png |only vip-0.1.1/vip/DESCRIPTION | 28 +- vip-0.1.1/vip/MD5 | 53 ++-- vip-0.1.1/vip/NAMESPACE | 8 vip-0.1.1/vip/NEWS.md | 25 + vip-0.1.1/vip/R/get_feature_names.R | 25 + vip-0.1.1/vip/R/get_predictions.R |only vip-0.1.1/vip/R/get_training_data.R |only vip-0.1.1/vip/R/metrics.R |only vip-0.1.1/vip/R/utils.R | 9 vip-0.1.1/vip/R/vi.R | 49 +-- vip-0.1.1/vip/R/vi_ice.R | 9 vip-0.1.1/vip/R/vi_model.R | 126 +++++++++ vip-0.1.1/vip/R/vi_pdp.R | 10 vip-0.1.1/vip/R/vi_permute.R |only vip-0.1.1/vip/R/vint.R | 5 vip-0.1.1/vip/R/vip.R | 10 vip-0.1.1/vip/README.md | 158 +----------- vip-0.1.1/vip/man/figures |only vip-0.1.1/vip/man/vi.Rd | 17 - vip-0.1.1/vip/man/vi_ice.Rd | 2 vip-0.1.1/vip/man/vi_model.Rd | 18 + vip-0.1.1/vip/man/vi_pdp.Rd | 2 vip-0.1.1/vip/man/vi_permute.Rd |only vip-0.1.1/vip/man/vip.Rd | 4 vip-0.1.1/vip/tests/testthat/test-abbreviate_feature_name.R |only vip-0.1.1/vip/tests/testthat/test-vi_model.R |only vip-0.1.1/vip/tests/testthat/test_get_feature_names.R | 138 +++++++--- vip-0.1.1/vip/tools/logo-vip.R | 4 vip-0.1.1/vip/tools/logo-vip.svg | 6 32 files changed, 423 insertions(+), 283 deletions(-)
Title: R/Package Version Check
Description: Check latest release version of R and R package (both in 'CRAN', 'Bioconductor' or 'Github').
Author: Guangchuang Yu [aut, cre]
Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>
Diff between rvcheck versions 0.1.0 dated 2018-05-22 and 0.1.1 dated 2018-09-27
rvcheck-0.1.0/rvcheck/README.md |only rvcheck-0.1.1/rvcheck/DESCRIPTION | 10 +++++----- rvcheck-0.1.1/rvcheck/MD5 | 11 +++++------ rvcheck-0.1.1/rvcheck/NAMESPACE | 1 + rvcheck-0.1.1/rvcheck/NEWS | 4 ++++ rvcheck-0.1.1/rvcheck/R/check_pkg.R | 1 - rvcheck-0.1.1/rvcheck/R/utilities.R | 3 ++- 7 files changed, 17 insertions(+), 13 deletions(-)
Title: R-Squared and Related Measures
Description: Calculate generalized R-squared, partial R-squared, and partial correlation coefficients for generalized linear models (including quasi models with well defined variance functions).
Author: Dabao Zhang
Maintainer: Dabao Zhang <zhangdb@stat.purdue.edu>
Diff between rsq versions 1.0.1 dated 2018-01-03 and 1.1 dated 2018-09-27
DESCRIPTION | 8 +++--- MD5 | 14 +++++----- R/rsq.R | 76 +++++++++++++++++++++++++++++++++++++++------------------ man/rsq.Rd | 3 +- man/rsq.lr.Rd | 3 +- man/rsq.n.Rd | 3 +- man/rsq.sse.Rd | 3 +- man/rsq.v.Rd | 3 +- 8 files changed, 73 insertions(+), 40 deletions(-)
Title: Finite Mixture Modeling, Clustering & Classification
Description: R functions for random univariate and multivariate finite mixture model generation, estimation, clustering, latent class analysis and classification. Variables can be continuous, discrete, independent or dependent and may follow normal, lognormal, Weibull, gamma, binomial, Poisson, Dirac or circular von Mises parametric families.
Author: Marko Nagode [aut, cre]
Maintainer: Marko Nagode <marko.nagode@fs.uni-lj.si>
Diff between rebmix versions 2.10.2 dated 2018-05-22 and 2.10.3 dated 2018-09-27
rebmix-2.10.2/rebmix/R/Zp.R |only rebmix-2.10.2/rebmix/R/coef.REBMIX.R |only rebmix-2.10.2/rebmix/R/densParzenWindow.x.R |only rebmix-2.10.2/rebmix/R/densParzenWindow.xy.R |only rebmix-2.10.2/rebmix/man/Zp.Rd |only rebmix-2.10.2/rebmix/man/boot.REBMIX.Rd |only rebmix-2.10.2/rebmix/man/chunk.Rd |only rebmix-2.10.2/rebmix/man/coef.REBMIX.Rd |only rebmix-2.10.2/rebmix/man/plot.REBMIX.Rd |only rebmix-2.10.3/rebmix/DESCRIPTION | 8 rebmix-2.10.3/rebmix/MD5 | 210 +- rebmix-2.10.3/rebmix/NAMESPACE | 75 rebmix-2.10.3/rebmix/R/AllClasses.R | 850 ++++++--- rebmix-2.10.3/rebmix/R/AllGenerics.R | 202 +- rebmix-2.10.3/rebmix/R/IC.R | 194 +- rebmix-2.10.3/rebmix/R/RCLRMIX.R | 401 ++-- rebmix-2.10.3/rebmix/R/RCLSMIX.R | 124 - rebmix-2.10.3/rebmix/R/REBMIX.R | 434 ++-- rebmix-2.10.3/rebmix/R/RNGMIX.R | 84 rebmix-2.10.3/rebmix/R/boot.REBMIX.R | 240 +- rebmix-2.10.3/rebmix/R/chunk.RCLS.R | 14 rebmix-2.10.3/rebmix/R/ddirac.R | 2 rebmix-2.10.3/rebmix/R/defaults.R | 2 rebmix-2.10.3/rebmix/R/demix.R | 152 + rebmix-2.10.3/rebmix/R/densHistogram.xy.R | 2 rebmix-2.10.3/rebmix/R/densKDE.x.R |only rebmix-2.10.3/rebmix/R/densKDE.xy.R |only rebmix-2.10.3/rebmix/R/densKNearestNeighbour.x.R | 14 rebmix-2.10.3/rebmix/R/densKNearestNeighbour.xy.R | 16 rebmix-2.10.3/rebmix/R/dfmix.R | 108 - rebmix-2.10.3/rebmix/R/dfmix.x.R | 6 rebmix-2.10.3/rebmix/R/dfmix.xy.R | 12 rebmix-2.10.3/rebmix/R/dfmvnorm.xy.R | 2 rebmix-2.10.3/rebmix/R/dist.x.R | 18 rebmix-2.10.3/rebmix/R/dist.xy.R | 18 rebmix-2.10.3/rebmix/R/extractThetaA.R | 12 rebmix-2.10.3/rebmix/R/extractThetaB.R | 12 rebmix-2.10.3/rebmix/R/is.error.R | 20 rebmix-2.10.3/rebmix/R/kseq.R | 20 rebmix-2.10.3/rebmix/R/legendA.R | 28 rebmix-2.10.3/rebmix/R/pdirac.R | 4 rebmix-2.10.3/rebmix/R/pemix.R | 84 rebmix-2.10.3/rebmix/R/pfmix.R | 124 - rebmix-2.10.3/rebmix/R/pfmix.x.R | 6 rebmix-2.10.3/rebmix/R/pfmix.xy.R | 12 rebmix-2.10.3/rebmix/R/pfmvnorm.xy.R | 2 rebmix-2.10.3/rebmix/R/plot.RCLRMIX.R | 214 +- rebmix-2.10.3/rebmix/R/plot.RCLSMIX.R | 186 +- rebmix-2.10.3/rebmix/R/plot.REBMIX.R | 280 +-- rebmix-2.10.3/rebmix/R/plot.RNGMIX.R | 166 - rebmix-2.10.3/rebmix/R/split.R | 110 - rebmix-2.10.3/rebmix/R/summary.R | 200 +- rebmix-2.10.3/rebmix/R/zaccessors.R |only rebmix-2.10.3/rebmix/build/vignette.rds |binary rebmix-2.10.3/rebmix/data/adult.rda |binary rebmix-2.10.3/rebmix/data/galaxy.rda |binary rebmix-2.10.3/rebmix/data/iris.rda |binary rebmix-2.10.3/rebmix/data/truck.rda |binary rebmix-2.10.3/rebmix/data/weibull.rda |binary rebmix-2.10.3/rebmix/data/weibullnormal.rda |binary rebmix-2.10.3/rebmix/data/wine.rda |binary rebmix-2.10.3/rebmix/demo/rebmix.galaxy.R | 6 rebmix-2.10.3/rebmix/demo/rebmix.mixed.continuous.discrete.R | 22 rebmix-2.10.3/rebmix/demo/rebmix.multivariate.normal.R | 36 rebmix-2.10.3/rebmix/demo/rebmix.truck.R | 22 rebmix-2.10.3/rebmix/demo/rebmix.univariate.normal.R | 18 rebmix-2.10.3/rebmix/demo/rebmix.weibullnormal.R | 24 rebmix-2.10.3/rebmix/inst/NEWS.Rd | 17 rebmix-2.10.3/rebmix/inst/doc/rebmix.R | 81 rebmix-2.10.3/rebmix/inst/doc/rebmix.Rnw | 93 - rebmix-2.10.3/rebmix/inst/doc/rebmix.pdf |binary rebmix-2.10.3/rebmix/man/AIC.Rd | 6 rebmix-2.10.3/rebmix/man/AWE.Rd | 2 rebmix-2.10.3/rebmix/man/BFSMIX.Rd | 4 rebmix-2.10.3/rebmix/man/HQC.Rd | 2 rebmix-2.10.3/rebmix/man/MDL.Rd | 2 rebmix-2.10.3/rebmix/man/PRD.Rd | 6 rebmix-2.10.3/rebmix/man/RCLRMIX-class.Rd | 54 rebmix-2.10.3/rebmix/man/RCLRMIX.Rd | 22 rebmix-2.10.3/rebmix/man/RCLS.chunk-class.Rd | 4 rebmix-2.10.3/rebmix/man/RCLS.chunk.Rd |only rebmix-2.10.3/rebmix/man/RCLSMIX-class.Rd | 7 rebmix-2.10.3/rebmix/man/RCLSMIX.Rd | 10 rebmix-2.10.3/rebmix/man/REBMIX-class.Rd | 49 rebmix-2.10.3/rebmix/man/REBMIX.Rd | 93 - rebmix-2.10.3/rebmix/man/REBMIX.boot-class.Rd | 5 rebmix-2.10.3/rebmix/man/REBMIX.boot.Rd |only rebmix-2.10.3/rebmix/man/REBMIX.plot.Rd |only rebmix-2.10.3/rebmix/man/RNGMIX-class.Rd | 9 rebmix-2.10.3/rebmix/man/RNGMIX.Rd | 152 + rebmix-2.10.3/rebmix/man/RNGMIX.Theta-class.Rd |only rebmix-2.10.3/rebmix/man/demix.Rd | 36 rebmix-2.10.3/rebmix/man/dfmix.Rd | 35 rebmix-2.10.3/rebmix/man/galaxy.Rd | 12 rebmix-2.10.3/rebmix/man/iris.Rd | 26 rebmix-2.10.3/rebmix/man/kseq.Rd | 2 rebmix-2.10.3/rebmix/man/pemix.Rd | 38 rebmix-2.10.3/rebmix/man/pfmix.Rd | 37 rebmix-2.10.3/rebmix/man/rebmix-internal.Rd | 263 ++ rebmix-2.10.3/rebmix/man/split.Rd | 2 rebmix-2.10.3/rebmix/man/wine.Rd | 18 rebmix-2.10.3/rebmix/src/Rrebmix.cpp | 674 +------ rebmix-2.10.3/rebmix/src/Rrebmvnorm.cpp | 544 +----- rebmix-2.10.3/rebmix/src/base.cpp | 38 rebmix-2.10.3/rebmix/src/base.h | 50 rebmix-2.10.3/rebmix/src/init.c | 48 rebmix-2.10.3/rebmix/src/rebmix.cpp | 8 rebmix-2.10.3/rebmix/src/rebmixf.cpp | 979 ++++------- rebmix-2.10.3/rebmix/src/rebmixf.h | 25 rebmix-2.10.3/rebmix/src/rebmvnormf.cpp | 160 - rebmix-2.10.3/rebmix/src/rebmvnormf.h | 6 rebmix-2.10.3/rebmix/src/rngmixf.cpp | 44 rebmix-2.10.3/rebmix/src/rngmvnormf.cpp | 2 rebmix-2.10.3/rebmix/vignettes/rebmix.Rnw | 93 - 114 files changed, 4301 insertions(+), 4253 deletions(-)
Title: Generalized Linear Mixed Models using Adaptive Gaussian
Quadrature
Description: Fits generalized linear mixed models for a single grouping factor under
maximum likelihood approximating the integrals over the random effects with an
adaptive Gaussian quadrature rule; Jose C. Pinheiro and Douglas M. Bates (1995)
<doi:10.1080/10618600.1995.10474663>.
Author: Dimitris Rizopoulos [aut, cre]
(<https://orcid.org/0000-0001-9397-0900>)
Maintainer: Dimitris Rizopoulos <d.rizopoulos@erasmusmc.nl>
Diff between GLMMadaptive versions 0.2-0 dated 2018-07-03 and 0.3-0 dated 2018-09-27
GLMMadaptive-0.2-0/GLMMadaptive/inst/figures |only GLMMadaptive-0.2-0/GLMMadaptive/man/ZI_fams.Rd |only GLMMadaptive-0.3-0/GLMMadaptive/DESCRIPTION | 20 GLMMadaptive-0.3-0/GLMMadaptive/MD5 | 67 + GLMMadaptive-0.3-0/GLMMadaptive/NAMESPACE | 8 GLMMadaptive-0.3-0/GLMMadaptive/NEWS.md |only GLMMadaptive-0.3-0/GLMMadaptive/R/Fit_Funs.R | 348 +++++++++- GLMMadaptive-0.3-0/GLMMadaptive/R/methods.R | 129 ++- GLMMadaptive-0.3-0/GLMMadaptive/R/mixed_fit.R | 9 GLMMadaptive-0.3-0/GLMMadaptive/R/mixed_model.R | 9 GLMMadaptive-0.3-0/GLMMadaptive/README.md | 39 + GLMMadaptive-0.3-0/GLMMadaptive/build/vignette.rds |binary GLMMadaptive-0.3-0/GLMMadaptive/inst/doc/Custom_Models.R | 2 GLMMadaptive-0.3-0/GLMMadaptive/inst/doc/Custom_Models.Rmd | 9 GLMMadaptive-0.3-0/GLMMadaptive/inst/doc/Custom_Models.html | 18 GLMMadaptive-0.3-0/GLMMadaptive/inst/doc/GLMMadaptive_basics.R | 5 GLMMadaptive-0.3-0/GLMMadaptive/inst/doc/GLMMadaptive_basics.Rmd | 61 + GLMMadaptive-0.3-0/GLMMadaptive/inst/doc/GLMMadaptive_basics.html | 27 GLMMadaptive-0.3-0/GLMMadaptive/inst/doc/Methods_MixMod.R | 5 GLMMadaptive-0.3-0/GLMMadaptive/inst/doc/Methods_MixMod.Rmd | 19 GLMMadaptive-0.3-0/GLMMadaptive/inst/doc/Methods_MixMod.html | 45 - GLMMadaptive-0.3-0/GLMMadaptive/inst/doc/Multiple_Comparisons.R |only GLMMadaptive-0.3-0/GLMMadaptive/inst/doc/Multiple_Comparisons.Rmd |only GLMMadaptive-0.3-0/GLMMadaptive/inst/doc/Multiple_Comparisons.html |only GLMMadaptive-0.3-0/GLMMadaptive/inst/doc/ZeroInflated_and_TwoPart_Models.R | 73 ++ GLMMadaptive-0.3-0/GLMMadaptive/inst/doc/ZeroInflated_and_TwoPart_Models.Rmd | 172 ++++ GLMMadaptive-0.3-0/GLMMadaptive/inst/doc/ZeroInflated_and_TwoPart_Models.html | 217 +++++- GLMMadaptive-0.3-0/GLMMadaptive/man/GLMMadaptive.Rd | 4 GLMMadaptive-0.3-0/GLMMadaptive/man/effectPlotData.Rd | 6 GLMMadaptive-0.3-0/GLMMadaptive/man/extra_fams.Rd |only GLMMadaptive-0.3-0/GLMMadaptive/man/figures |only GLMMadaptive-0.3-0/GLMMadaptive/man/marginal_coefs.Rd | 5 GLMMadaptive-0.3-0/GLMMadaptive/man/methods.Rd | 32 GLMMadaptive-0.3-0/GLMMadaptive/man/mixed_model.Rd | 8 GLMMadaptive-0.3-0/GLMMadaptive/vignettes/Custom_Models.Rmd | 9 GLMMadaptive-0.3-0/GLMMadaptive/vignettes/GLMMadaptive_basics.Rmd | 61 + GLMMadaptive-0.3-0/GLMMadaptive/vignettes/Methods_MixMod.Rmd | 19 GLMMadaptive-0.3-0/GLMMadaptive/vignettes/Multiple_Comparisons.Rmd |only GLMMadaptive-0.3-0/GLMMadaptive/vignettes/ZeroInflated_and_TwoPart_Models.Rmd | 172 ++++ 39 files changed, 1309 insertions(+), 289 deletions(-)
Title: Make 'ggplot2' Graphics Interactive
Description: Create interactive 'ggplot2' graphics using 'htmlwidgets'.
Author: David Gohel [aut, cre],
Mike Bostock [cph] (d3.js),
Speros Kokenes [cph] (d3-lasso),
Eric Shull [cph] (saveSvgAsPng js library),
Eric Book [ctb] (hline and vline geoms)
Maintainer: David Gohel <david.gohel@ardata.fr>
Diff between ggiraph versions 0.4.4 dated 2018-07-15 and 0.5.0 dated 2018-09-27
ggiraph-0.4.4/ggiraph/inst/htmlwidgets/ggiraph.js |only ggiraph-0.4.4/ggiraph/inst/htmlwidgets/ggiraph.yaml |only ggiraph-0.4.4/ggiraph/inst/htmlwidgets/lib/d3-4.3.0 |only ggiraph-0.4.4/ggiraph/inst/htmlwidgets/lib/ggiraph-0.3.0 |only ggiraph-0.4.4/ggiraph/inst/medias |only ggiraph-0.4.4/ggiraph/inst/rmd |only ggiraph-0.4.4/ggiraph/inst/shiny |only ggiraph-0.5.0/ggiraph/DESCRIPTION | 11 ggiraph-0.5.0/ggiraph/MD5 | 105 +++--- ggiraph-0.5.0/ggiraph/NAMESPACE | 9 ggiraph-0.5.0/ggiraph/NEWS | 17 + ggiraph-0.5.0/ggiraph/R/geom_rect_interactive.R | 5 ggiraph-0.5.0/ggiraph/R/ggiraph.R | 207 ++----------- ggiraph-0.5.0/ggiraph/R/girafe.R |only ggiraph-0.5.0/ggiraph/R/girafe_options.R |only ggiraph-0.5.0/ggiraph/R/utils.R | 79 ---- ggiraph-0.5.0/ggiraph/README.md | 8 ggiraph-0.5.0/ggiraph/inst/COPYRIGHTS | 32 +- ggiraph-0.5.0/ggiraph/inst/examples |only ggiraph-0.5.0/ggiraph/inst/htmlwidgets/girafe.js |only ggiraph-0.5.0/ggiraph/inst/htmlwidgets/girafe.yaml |only ggiraph-0.5.0/ggiraph/inst/htmlwidgets/lib/d3-5.7.0 |only ggiraph-0.5.0/ggiraph/inst/htmlwidgets/lib/ggiraphjs-0.1.0 |only ggiraph-0.5.0/ggiraph/man/geom_boxplot_interactive.Rd | 13 ggiraph-0.5.0/ggiraph/man/geom_histogram_interactive.Rd | 4 ggiraph-0.5.0/ggiraph/man/geom_hline_interactive.Rd | 6 ggiraph-0.5.0/ggiraph/man/geom_map_interactive.Rd | 6 ggiraph-0.5.0/ggiraph/man/geom_point_interactive.Rd | 18 - ggiraph-0.5.0/ggiraph/man/geom_polygon_interactive.Rd | 6 ggiraph-0.5.0/ggiraph/man/geom_segment_interactive.Rd | 7 ggiraph-0.5.0/ggiraph/man/geom_sf_interactive.Rd | 2 ggiraph-0.5.0/ggiraph/man/geom_text_interactive.Rd | 6 ggiraph-0.5.0/ggiraph/man/ggiraph.Rd | 85 +---- ggiraph-0.5.0/ggiraph/man/ggiraphOutput.Rd | 4 ggiraph-0.5.0/ggiraph/man/girafe.Rd |only ggiraph-0.5.0/ggiraph/man/girafeOutput.Rd |only ggiraph-0.5.0/ggiraph/man/girafe_options.Rd |only ggiraph-0.5.0/ggiraph/man/interactive_polygon_grob.Rd | 8 ggiraph-0.5.0/ggiraph/man/interactive_polyline_grob.Rd | 6 ggiraph-0.5.0/ggiraph/man/interactive_segments_grob.Rd | 4 ggiraph-0.5.0/ggiraph/man/interactive_text_grob.Rd | 9 ggiraph-0.5.0/ggiraph/man/opts_hover.Rd |only ggiraph-0.5.0/ggiraph/man/opts_selection.Rd |only ggiraph-0.5.0/ggiraph/man/opts_toolbar.Rd |only ggiraph-0.5.0/ggiraph/man/opts_tooltip.Rd |only ggiraph-0.5.0/ggiraph/man/opts_zoom.Rd |only ggiraph-0.5.0/ggiraph/man/renderGirafe.Rd |only ggiraph-0.5.0/ggiraph/man/renderggiraph.Rd | 2 48 files changed, 235 insertions(+), 424 deletions(-)
Title: 'binb' is not 'Beamer'
Description: A collection of 'LaTeX' styles using 'Beamer' customization for
pdf-based presentation slides in 'RMarkdown'. At present it contains
'RMarkdown' adaptations of the LaTeX themes 'Metropolis' (formerly 'mtheme')
theme by Matthias Vogelgesang and others (now included in 'TeXLive'), and
the 'IQSS' by Ista Zahn (which is included here). Additional (free) fonts
may be needed: 'Metropolis' prefers 'Fira', and 'IQSS' requires 'Libertinus'.
Author: Dirk Eddelbuettel and Ista Zahn
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between binb versions 0.0.1 dated 2018-09-19 and 0.0.2 dated 2018-09-27
ChangeLog | 52 ++++++++++++++ DESCRIPTION | 8 +- MD5 | 24 ++++-- NAMESPACE | 2 R/binb.R | 55 +++++++++++++++ README.md | 135 ++++++++++++++++++++++++++++++-------- inst/NEWS.Rd | 9 ++ inst/doc/metropolisDemo.pdf |binary inst/presentoDemo |only inst/rmarkdown/templates/presento |only man/metropolis.Rd | 9 ++ 11 files changed, 253 insertions(+), 41 deletions(-)
Title: Simulations and Visualizations of Rubik's Cube (with Mods)
Description: Provides simplified methods for managing classic Rubik's cubes and many other modifications of it (such as NxNxN size cubes, void cubes and 8-coloured cubes - so called octa cubes). Includes functions of handling special syntax for managing such cubes; and different approach to plotting 3D cubes without using external libraries (for example 'OpenGL').
Author: Wojciech Rosa
Maintainer: Wojciech Rosa <w.rosa@pollub.pl>
Diff between rcube versions 0.2 dated 2018-04-22 and 0.3 dated 2018-09-27
DESCRIPTION | 8 ++--- MD5 | 10 ++++--- NAMESPACE | 4 ++ R/createCube.R | 77 +++++++++++++++++++++++++++++++++++++++++++++++++++--- R/scramble.R |only man/createCube.Rd | 11 +++++-- man/scramble.Rd |only 7 files changed, 95 insertions(+), 15 deletions(-)
Title: Tools to Manage a Parametric Function that Describes Phenology
Description: Functions used to fit and test the phenology of species based on counts.
Author: Marc Girondot
Maintainer: Marc Girondot <marc.girondot@u-psud.fr>
Diff between phenology versions 7.1 dated 2018-07-10 and 7.2 dated 2018-09-27
DESCRIPTION | 10 +- MD5 | 99 ++++++++++++------------- NAMESPACE | 1 NEWS | 10 ++ R/IPlnL.R | 126 ++++++++++++++++---------------- R/Lnegbin.R | 171 ++++++++++++++++++++++++++++++++++++++++---- R/daily_count.R | 21 ++--- R/fit_phenology.R | 153 ++++++++++++++++++++++++++++----------- R/format_par.R | 14 +-- R/map_phenology.R | 4 - R/phenology-package.R | 4 - R/phenology_MHmcmc.R | 4 - R/plot.phenology.R | 3 R/summary.phenology.R | 95 ++++++++++++++++++++++-- inst/shiny/ui.R | 5 + man/ECFOCF_f.Rd | 8 +- man/IPFit.Rd | 16 ++-- man/IPModel.Rd | 6 + man/IPPredict.Rd | 1 man/MinBMinE_to_Min.Rd | 3 man/TableECFOCF.Rd | 1 man/Tagloss_L.Rd | 9 +- man/Tagloss_LengthObs.Rd | 1 man/Tagloss_daymax.Rd | 1 man/Tagloss_fit.Rd | 10 +- man/Tagloss_format.Rd | 1 man/Tagloss_model.Rd | 1 man/Tagloss_simulate.Rd | 1 man/dot-read_phenology.Rd |only man/fitCF.Rd | 7 + man/fitRMU.Rd | 6 + man/fitRMU_MHmcmc.Rd | 4 - man/fitRMU_MHmcmc_p.Rd | 4 - man/fit_phenology.Rd | 20 ++++- man/likelihood_phenology.Rd | 6 - man/lnLCF.Rd | 4 - man/logLik.ECFOCF.Rd | 1 man/logLik.Tagloss.Rd | 1 man/logLik.fitRMU.Rd | 1 man/map_phenology.Rd | 9 +- man/par_init.Rd | 4 - man/phenology-package.Rd | 4 - man/phenology_MHmcmc.Rd | 4 - man/plot.ECFOCF.Rd | 4 - man/plot.IP.Rd | 1 man/plot.TableECFOCF.Rd | 1 man/plot.Tagloss.Rd | 10 +- man/plot.fitRMU.Rd | 1 man/plot.phenologymap.Rd | 4 - man/summary.IP.Rd | 1 man/toggle_Min_PMin.Rd | 3 51 files changed, 621 insertions(+), 258 deletions(-)
Title: Create Meme
Description: The word 'Meme' was originated from the book, 'The Selfish Gene', authored by Richard Dawkins (1976).
It is a unit of culture that is passed from one generation to another and correlates to the gene, the unit of physical heredity.
The internet memes are captioned photos that are intended to be funny, ridiculous.
Memes behave like infectious viruses and travel from person to person quickly through social media.
The 'meme' package allows users to make custom memes.
Author: Guangchuang Yu [aut, cre] (<https://orcid.org/0000-0002-6485-8781>)
Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>
Diff between meme versions 0.2.0 dated 2018-04-08 and 0.2.1 dated 2018-09-27
DESCRIPTION | 12 +- MD5 | 26 ++--- NAMESPACE | 2 NEWS | 5 + R/meme.R | 5 - R/plot.R | 4 build/vignette.rds |binary inst/doc/meme.R | 5 - inst/doc/meme.Rmd | 5 - inst/doc/meme.html | 260 ++++++++++++++++++++++++++++++----------------------- man/meme.Rd | 5 - man/print.meme.Rd | 8 - man/reexports.Rd | 1 vignettes/meme.Rmd | 5 - 14 files changed, 195 insertions(+), 148 deletions(-)
Title: Estimate Energy Fluxes in Food Webs
Description: Compute energy fluxes in trophic networks, from resources to their consumers, and can be applied to systems ranging from simple two-species interactions to highly complex food webs. It implements the approach described in Gauzens et al. (2017) <doi:10.1101/229450> to calculate energy fluxes, which are also used to calculate equilibrium stability.
Author: Benoit Gauzens
Maintainer: Benoit Gauzens <benoit.gauzens@gmail.com>
Diff between fluxweb versions 0.1.1 dated 2018-06-20 and 0.2.0 dated 2018-09-27
DESCRIPTION | 8 ++++--- MD5 | 23 ++++++++++++++++----- R/sensitivity.R | 50 +++++++++++++++++++++++------------------------ build |only data/groups.level.RData |binary data/species.level.RData |binary inst |only man/sensitivity.Rd | 21 ++++++------------- tests |only vignettes |only 10 files changed, 55 insertions(+), 47 deletions(-)
Title: Tools to Analyze the Thermal Reaction Norm of Embryo Growth
Description: Tools to analyze the embryo growth and the sexualisation thermal reaction norms.
Author: Marc Girondot <marc.girondot@u-psud.fr>
Maintainer: Marc Girondot <marc.girondot@u-psud.fr>
Diff between embryogrowth versions 7.4 dated 2018-03-26 and 7.4.1 dated 2018-09-27
embryogrowth-7.4.1/embryogrowth/DESCRIPTION | 10 - embryogrowth-7.4.1/embryogrowth/MD5 | 90 +++++----- embryogrowth-7.4.1/embryogrowth/NAMESPACE | 2 embryogrowth-7.4.1/embryogrowth/NEWS | 7 embryogrowth-7.4.1/embryogrowth/R/DatabaseTSD.R | 16 + embryogrowth-7.4.1/embryogrowth/R/embryogrowth-package.R | 4 embryogrowth-7.4.1/embryogrowth/R/plot.tsd.R | 12 - embryogrowth-7.4.1/embryogrowth/R/uncertainty.datalogger.R |only embryogrowth-7.4.1/embryogrowth/data/DatabaseNestingArea.rda |binary embryogrowth-7.4.1/embryogrowth/data/DatabaseTSD.rda |binary embryogrowth-7.4.1/embryogrowth/data/TSP.list.rda |binary embryogrowth-7.4.1/embryogrowth/data/stages.rda |binary embryogrowth-7.4.1/embryogrowth/inst/shiny/ui.R | 4 embryogrowth-7.4.1/embryogrowth/man/ChangeSSM.Rd | 7 embryogrowth-7.4.1/embryogrowth/man/DatabaseTSD.Rd | 24 ++ embryogrowth-7.4.1/embryogrowth/man/FormatNests.Rd | 4 embryogrowth-7.4.1/embryogrowth/man/GRTRN_MHmcmc.Rd | 9 - embryogrowth-7.4.1/embryogrowth/man/MovingIncubation.Rd | 9 - embryogrowth-7.4.1/embryogrowth/man/P_TRT.Rd | 7 embryogrowth-7.4.1/embryogrowth/man/STRN.Rd | 5 embryogrowth-7.4.1/embryogrowth/man/STRN_MHmcmc.Rd | 4 embryogrowth-7.4.1/embryogrowth/man/TRN_MHmcmc_p.Rd | 4 embryogrowth-7.4.1/embryogrowth/man/TSP.list.Rd | 1 embryogrowth-7.4.1/embryogrowth/man/calibrate.datalogger.Rd | 3 embryogrowth-7.4.1/embryogrowth/man/embryogrowth-package.Rd | 4 embryogrowth-7.4.1/embryogrowth/man/fitHS.Rd | 1 embryogrowth-7.4.1/embryogrowth/man/info.nests.Rd | 19 +- embryogrowth-7.4.1/embryogrowth/man/likelihoodR.Rd | 7 embryogrowth-7.4.1/embryogrowth/man/lnLHS.Rd | 1 embryogrowth-7.4.1/embryogrowth/man/logLik.HatchingSuccess.Rd | 1 embryogrowth-7.4.1/embryogrowth/man/modelHS.Rd | 1 embryogrowth-7.4.1/embryogrowth/man/nobs.HatchingSuccess.Rd | 1 embryogrowth-7.4.1/embryogrowth/man/plot.NestsResult.Rd | 34 ++- embryogrowth-7.4.1/embryogrowth/man/plot.tsd.Rd | 17 + embryogrowth-7.4.1/embryogrowth/man/plotR.Rd | 19 +- embryogrowth-7.4.1/embryogrowth/man/plot_transition.Rd | 3 embryogrowth-7.4.1/embryogrowth/man/predict.HatchingSuccess.Rd | 1 embryogrowth-7.4.1/embryogrowth/man/predict.tsd.Rd | 1 embryogrowth-7.4.1/embryogrowth/man/searchR.Rd | 6 embryogrowth-7.4.1/embryogrowth/man/stages.Rd | 1 embryogrowth-7.4.1/embryogrowth/man/switch.transition.Rd | 3 embryogrowth-7.4.1/embryogrowth/man/tsd.Rd | 1 embryogrowth-7.4.1/embryogrowth/man/tsd_MHmcmc.Rd | 9 - embryogrowth-7.4.1/embryogrowth/man/tsd_MHmcmc_p.Rd | 1 embryogrowth-7.4.1/embryogrowth/man/uncertainty.datalogger.Rd |only embryogrowth-7.4.1/embryogrowth/man/weightmaxentropy.Rd | 10 - embryogrowth-7.4/embryogrowth/R/precision.datalogger.R |only embryogrowth-7.4/embryogrowth/man/precision.datalogger.Rd |only 48 files changed, 210 insertions(+), 153 deletions(-)
Title: Time Series Regression Models with Distributed Lag Models
Description: Provides time series regression models with one predictor using finite distributed lag models, polynomial (Almon) distributed lag models, geometric distributed lag models with Koyck transformation, and autoregressive distributed lag models. It also consists of functions for computation of h-step ahead forecasts from these models. See Baltagi (2011) <doi:10.1007/978-3-642-20059-5> for more information.
Author: Haydar Demirhan [aut, cre, cph] (<https://orcid.org/0000-0002-8565-4710>)
Maintainer: Haydar Demirhan <haydar.demirhan@rmit.edu.au>
Diff between dLagM versions 1.0.6 dated 2018-09-14 and 1.0.7 dated 2018-09-27
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NEWS.md | 7 +++++-- R/ardlDlm.default.R | 6 ++++-- man/dLagM-package.Rd | 4 ++-- 5 files changed, 19 insertions(+), 14 deletions(-)
Title: Fractional ARIMA (and Other Long Memory) Time Series Modeling
Description: Simulates, fits, and predicts long-memory and anti-persistent
time series, possibly mixed with ARMA, regression, transfer-function
components.
Exact methods (MLE, forecasting, simulation) are used.
Bug reports should be done via GitHub (at
<https://github.com/JQVeenstra/arfima>), where the development version
of this package lives; it can be installed using devtools.
Author: JQ (Justin) Veenstra [aut, cre], A.I. McLeod [aut]
Maintainer: JQ Veenstra <jqveenstra@gmail.com>
Diff between arfima versions 1.6-7 dated 2018-06-19 and 1.6-8 dated 2018-09-27
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/utilityfcns.R | 4 ++-- man/arfima.sim.Rd | 3 +++ 4 files changed, 12 insertions(+), 9 deletions(-)
Title: Multivariate Multiscale Spatial Analysis
Description: Tools for the multiscale spatial analysis of multivariate data.
Several methods are based on the use of a spatial weighting matrix and its
eigenvector decomposition (Moran's Eigenvectors Maps, MEM).
Author: Stéphane Dray, David Bauman, Guillaume Blanchet, Daniel Borcard, Sylvie Clappe, Guillaume Guenard,
Thibaut Jombart, Guillaume Larocque, Pierre Legendre, Naima Madi, Helene H Wagner
Maintainer: Stéphane Dray <stephane.dray@univ-lyon1.fr>
Diff between adespatial versions 0.3-0 dated 2018-08-31 and 0.3-2 dated 2018-09-27
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++++---- NAMESPACE | 2 ++ R/listw.candidates.R | 18 +++++++++--------- R/ortho.AIC.R |only R/test.W.R |only inst/doc/tutorial.html | 4 ++-- man/ortho.AIC.Rd |only man/test.W.Rd |only 9 files changed, 25 insertions(+), 19 deletions(-)
Title: Analytic Hierarchy Process for Survey Data
Description: The Analytic Hierarchy Process is a versatile multi-criteria decision-making tool introduced by Saaty (1987) <doi:10.1016/0270-0255(87)90473-8> that allows decision-makers to weigh attributes and evaluate alternatives presented to them. This package provides a consistent methodology for researchers to reformat data and run analytic hierarchy process in R on data that are formatted using the survey data entry mode. It is optimized for performing the analytic hierarchy process with many decision-makers, and provides tools and options for researchers to aggregate individual preferences and test multiple options. It also allows researchers to quantify, visualize and correct for inconsistency in the decision-maker's comparisons.
Author: Frankie Cho [aut, cre]
Maintainer: Frankie Cho <htcho@connect.hku.hk>
Diff between ahpsurvey versions 0.2.1 dated 2018-09-16 and 0.2.2 dated 2018-09-27
DESCRIPTION | 6 MD5 | 21 NEWS.md | 6 R/ahp_missing.R | 3 README.md | 19 build/partial.rdb |binary inst/doc/my-vignette.R | 15 inst/doc/my-vignette.Rmd | 51 - inst/doc/my-vignette.html | 1694 ++++++++++++++++++++----------------------- vignettes/REFERENCES_vig.bib | 2 vignettes/my-vignette.Rmd | 51 - vignettes/my-vignette.md |only 12 files changed, 925 insertions(+), 943 deletions(-)
Title: Bayesian Non- And Semi-Parametric Model Fitting
Description: Markov chain Monte Carlo algorithms for non- and semi-parametric models: 1. Dirichlet process mixtures & 2. spike-slab for variable selection in mean/variance regression models.
Author: Georgios Papageorgiou
Maintainer: Georgios Papageorgiou <gpapageo@gmail.com>
Diff between BNSP versions 2.0.7 dated 2018-07-20 and 2.0.8 dated 2018-09-27
DESCRIPTION | 10 MD5 | 23 - NAMESPACE | 4 R/mvrm.R | 1058 ++++++++++++++++++++++++++-------------------------- man/BNSP-package.Rd | 4 man/mvrm.Rd | 4 man/s.Rd |only man/sm.Rd | 4 man/te.Rd |only man/ti.Rd |only src/OneResLtnt.c | 12 src/mvrmGAM.c | 12 src/pdfs.h | 5 src/spec.BCM.h | 15 14 files changed, 587 insertions(+), 564 deletions(-)
Title: Read and Write MAT Files and Call MATLAB from Within R
Description: Methods readMat() and writeMat() for reading and writing MAT files. For user with MATLAB v6 or newer installed (either locally or on a remote host), the package also provides methods for controlling MATLAB (trademark) via R and sending and retrieving data between R and MATLAB.
Author: Henrik Bengtsson [aut, cre, cph],
Andy Jacobson [ctb] (Internal MAT v4 reader),
Jason Riedy [ctb] (Support for reading compressed files, sparse
matrices and UTF-encoded strings.)
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between R.matlab versions 3.6.1 dated 2016-10-19 and 3.6.2 dated 2018-09-27
DESCRIPTION | 17 MD5 | 53 NEWS | 1386 +++++++++----- R/000.R | 2 R/006.fixVarArgs.R | 17 R/901.MatlabServer.R | 3 R/999.NonDocumentedObjects.R | 7 R/999.package.R | 9 R/Matlab.R | 2506 ++++++++++++-------------- R/readMat.R | 2041 +++++++++------------ R/utils.R |only R/writeMat.R | 1969 +++++++++----------- R/zzz.R | 29 man/1._The_MATLAB_server_running_in_MATLAB.Rd | 2 man/Matlab.Rd | 56 man/R.matlab-package.Rd | 13 man/getVariable.Matlab.Rd | 2 man/readMat.Rd | 4 man/setFunction.Matlab.Rd | 13 man/setVariable.Matlab.Rd | 2 man/startServer.Matlab.Rd | 4 man/writeMat.Rd | 20 tests/Matlab,options.R | 2 tests/Matlab.R | 88 tests/readMat,noattach.R | 6 tests/readMat.R | 98 - tests/startup.R | 8 tests/writeMat.R | 137 - 28 files changed, 4214 insertions(+), 4280 deletions(-)
Title: Read Spectral and Logged Data from Foreign Files
Description: Functions for reading, and in some cases writing, foreign files
containing spectral data from spectrometers and their associated software,
output from daylight simulation models in common use, and some spectral
data repositories. As well as functions for exchange of spectral data with
other R packages. Part of the 'r4photobiology' suite,
Aphalo P. J. (2015) <doi:10.19232/uv4pb.2015.1.14>.
Author: Pedro J. Aphalo [aut, cre] (<https://orcid.org/0000-0003-3385-972X>),
Titta K. Kotilainen [ctb] (<https://orcid.org/0000-0002-2822-9734>),
Glenn Davis [ctb]
Maintainer: Pedro J. Aphalo <pedro.aphalo@helsinki.fi>
Diff between photobiologyInOut versions 0.4.16 dated 2018-08-31 and 0.4.17-1 dated 2018-09-27
DESCRIPTION | 21 +++---- MD5 | 73 ++++++++++++------------ NAMESPACE | 1 NEWS | 12 +++- R/foreign-conversion.r | 3 - R/on-load.R | 4 - R/read-aster-file.r | 2 R/read-avaspec-csv.r | 2 R/read-csi-dat.r | 2 R/read-fmi-cum.R | 1 R/read-libradtran.r | 4 - R/read-licor-prn.r | 4 - R/read-macam-dta.r | 2 R/read-oojaz-file.r | 120 +++++++++++++++++++++++++++++++++++++---- R/read-oopi-file.r | 2 R/read-ooss-file.r | 2 R/read-tuv-file.r | 8 +- R/read-yoctopuce-csv.r | 24 ++++---- README.md | 2 inst/doc/user-guide.R | 3 - inst/doc/user-guide.Rmd | 7 +- inst/doc/user-guide.html | 64 ++++++++++++--------- inst/extdata/reflectance.jaz |only man/read_ASTER_txt.Rd | 2 man/read_avaspec_csv.Rd | 2 man/read_csi_dat.Rd | 2 man/read_licor_prn.Rd | 4 - man/read_macam_dta.Rd | 2 man/read_oo_jazirrad.Rd | 36 +++++++++--- man/read_oo_pidata.Rd | 2 man/read_oo_ssirrad.Rd | 2 man/read_qtuv_txt.Rd | 2 man/read_tuv_usrout.Rd | 2 man/read_uvspec_disort.Rd | 2 man/read_uvspec_disort_vesa.Rd | 2 man/read_yoctopuce_csv.Rd | 16 +++-- tests/testthat/test-oo.R | 68 ++++++++++++++++++++++- vignettes/user-guide.Rmd | 7 +- 38 files changed, 367 insertions(+), 147 deletions(-)
More information about photobiologyInOut at CRAN
Permanent link
Title: Mixed Conditional Logit Models
Description: Specification and estimation of conditional logit models of binary
responses and multinomial counts is provided, with or without
random effects. The current implementation of the estimator for random
effects variances uses a Laplace approximation (or PQL) approach and thus should
be used only if groups sizes are large.
Author: Martin Elff
Maintainer: Martin Elff <mclogit@elff.eu>
Diff between mclogit versions 0.6 dated 2018-05-10 and 0.6.1 dated 2018-09-27
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- R/mclogit.R | 2 +- data/Transport.rda |binary data/electors.rda |binary inst/ChangeLog | 6 +++++- 6 files changed, 15 insertions(+), 11 deletions(-)
Title: Interface to the 'iPTMnet' API
Description: Provides an R interface to the 'iPTMnet' database REST API, which can be used to retrieve
Post Translational Modification (PTM) data in systems biology context. This package handles all the aspects
of communicating with the API, which involve sending the request, checking the error codes and parsing the
response in a format that is ready to integrate into existing workflows.
Author: Sachin Gavali
Maintainer: Sachin Gavali <saching@udel.edu>
Diff between iptmnetr versions 0.1.2 dated 2018-06-06 and 0.1.5 dated 2018-09-27
DESCRIPTION | 8 LICENSE | 4 MD5 | 46 NAMESPACE | 34 R/api.R | 1041 +- man/PTMTypes.Rd | 58 man/Role.Rd | 44 man/TermType.Rd | 40 man/get_host_url.Rd | 34 man/get_info.Rd | 40 man/get_ppi_for_proteoforms.Rd | 40 man/get_proteoforms.Rd | 40 man/get_ptm_dependent_ppi.Rd | 40 man/get_ptm_enzymes_from_file.Rd | 62 man/get_ptm_enzymes_from_list.Rd | 80 man/get_ptm_ppi_from_file.Rd | 62 man/get_ptm_ppi_from_list.Rd | 80 man/get_substrates.Rd | 40 man/search_iptmnet.Rd | 80 man/set_host_url.Rd | 34 tests/testthat.R | 6 tests/testthat/egfr_sites_formatted.txt | 486 - tests/testthat/egfr_sites_formatted_long.txt |11668 +++++++++++++-------------- tests/testthat/test_api.R | 220 24 files changed, 7150 insertions(+), 7137 deletions(-)
Title: Tool for Annotating Images in Preparation for Analysis
Description: A tool to help create shiny apps for selecting and annotating
elements of images. Users must supply images, questions, and answer
choices. The user interface is a dynamic shiny app, that displays the images
and questions and answer choices. The data generated can be saved to a
file that can be used for subsequent analysis. The original purpose was to
annotate still images from tennis video for face recognition and emotion
detection purposes.
Author: Stephanie Kobakian [aut, cre],
Mitchell O'Hara-Wild [aut]
Maintainer: Stephanie Kobakian <stephanie.kobakian@gmail.com>
Diff between taipan versions 0.1.1 dated 2018-09-19 and 0.1.2 dated 2018-09-27
taipan-0.1.1/taipan/LICENSE |only taipan-0.1.1/taipan/R/build.R |only taipan-0.1.1/taipan/R/questions.R |only taipan-0.1.2/taipan/DESCRIPTION | 15 ++-- taipan-0.1.2/taipan/MD5 | 24 +++---- taipan-0.1.2/taipan/NAMESPACE | 1 taipan-0.1.2/taipan/NEWS.md | 6 + taipan-0.1.2/taipan/R/buildTaipan.R |only taipan-0.1.2/taipan/R/taipanQuestions.R |only taipan-0.1.2/taipan/README.md | 74 +++++++++++++++++++--- taipan-0.1.2/taipan/inst/app/server.R | 18 +++++ taipan-0.1.2/taipan/inst/app/ui.R | 9 -- taipan-0.1.2/taipan/inst/doc/taipan-vignette.html | 4 - taipan-0.1.2/taipan/man/buildTaipan.Rd | 34 +++++----- taipan-0.1.2/taipan/man/figures/readme_app.png |only taipan-0.1.2/taipan/man/taipanQuestions.Rd | 35 +++++----- 16 files changed, 147 insertions(+), 73 deletions(-)
Title: R Interface to Apache Spark
Description: R interface to Apache Spark, a fast and general engine for big data
processing, see <http://spark.apache.org>. This package supports connecting to
local and remote Apache Spark clusters, provides a 'dplyr' compatible back-end,
and provides an interface to Spark's built-in machine learning algorithms.
Author: Javier Luraschi [aut, cre],
Kevin Kuo [aut] (<https://orcid.org/0000-0001-7803-7901>),
Kevin Ushey [aut],
JJ Allaire [aut],
Samuel Macedo [ctb],
RStudio [cph],
The Apache Software Foundation [aut, cph]
Maintainer: Javier Luraschi <javier@rstudio.com>
Diff between sparklyr versions 0.8.4 dated 2018-05-25 and 0.9.1 dated 2018-09-27
sparklyr-0.8.4/sparklyr/R/ml_feature_quantile_discretizer_bucketizer.R |only sparklyr-0.8.4/sparklyr/R/ml_validator_feature.R |only sparklyr-0.8.4/sparklyr/R/shell_hive.R |only sparklyr-0.8.4/sparklyr/inst/java/sparkworker-1.5-2.10.jar |only sparklyr-0.8.4/sparklyr/inst/java/sparkworker-1.6-2.10.jar |only sparklyr-0.8.4/sparklyr/inst/java/sparkworker-2.0-2.11.jar |only sparklyr-0.8.4/sparklyr/inst/java/sparkworker-2.1-2.11.jar |only sparklyr-0.8.4/sparklyr/tests/testthat/logs/log4j.spark.log.2018-05-01 |only sparklyr-0.8.4/sparklyr/tests/testthat/logs/log4j.spark.log.2018-05-15 |only sparklyr-0.8.4/sparklyr/tests/testthat/test-apply-config.R |only sparklyr-0.8.4/sparklyr/tests/testthat/test-ml-feature-estimator-transformers.R |only sparklyr-0.8.4/sparklyr/tests/testthat/test-ml-feature-standard-transformers.R |only sparklyr-0.8.4/sparklyr/tests/testthat/test-ml-helpers.R |only sparklyr-0.8.4/sparklyr/tests/testthat/test-ml-tuning.R |only sparklyr-0.8.4/sparklyr/tests/testthat/test-zzz-livy.R |only sparklyr-0.9.1/sparklyr/DESCRIPTION | 16 sparklyr-0.9.1/sparklyr/MD5 | 778 +++++----- sparklyr-0.9.1/sparklyr/NAMESPACE | 90 + sparklyr-0.9.1/sparklyr/NEWS.md | 172 ++ sparklyr-0.9.1/sparklyr/R/config_settings.R |only sparklyr-0.9.1/sparklyr/R/config_spark.R | 47 sparklyr-0.9.1/sparklyr/R/connection_instances.R | 23 sparklyr-0.9.1/sparklyr/R/connection_progress.R |only sparklyr-0.9.1/sparklyr/R/connection_shinyapp.R | 4 sparklyr-0.9.1/sparklyr/R/connection_spark.R | 115 - sparklyr-0.9.1/sparklyr/R/connection_viewer.R | 46 sparklyr-0.9.1/sparklyr/R/core_config.R | 32 sparklyr-0.9.1/sparklyr/R/core_deserialize.R | 107 + sparklyr-0.9.1/sparklyr/R/core_gateway.R | 16 sparklyr-0.9.1/sparklyr/R/core_invoke.R | 139 + sparklyr-0.9.1/sparklyr/R/core_jobj.R | 3 sparklyr-0.9.1/sparklyr/R/core_serialize.R | 19 sparklyr-0.9.1/sparklyr/R/core_worker_config.R | 4 sparklyr-0.9.1/sparklyr/R/data_copy.R | 6 sparklyr-0.9.1/sparklyr/R/data_csv.R | 42 sparklyr-0.9.1/sparklyr/R/data_interface.R | 103 + sparklyr-0.9.1/sparklyr/R/databricks_connection.R | 27 sparklyr-0.9.1/sparklyr/R/dbi_spark_result.R | 10 sparklyr-0.9.1/sparklyr/R/dplyr_spark.R | 21 sparklyr-0.9.1/sparklyr/R/dplyr_spark_table.R | 77 sparklyr-0.9.1/sparklyr/R/imports.R | 3 sparklyr-0.9.1/sparklyr/R/install_spark.R | 6 sparklyr-0.9.1/sparklyr/R/install_spark_versions.R | 29 sparklyr-0.9.1/sparklyr/R/jobs_api.R |only sparklyr-0.9.1/sparklyr/R/kubernetes_config.R |only sparklyr-0.9.1/sparklyr/R/livy_connection.R | 115 - sparklyr-0.9.1/sparklyr/R/livy_install.R | 12 sparklyr-0.9.1/sparklyr/R/livy_invoke.R | 3 sparklyr-0.9.1/sparklyr/R/livy_service.R | 6 sparklyr-0.9.1/sparklyr/R/livy_sources.R | 5 sparklyr-0.9.1/sparklyr/R/ml_classification_decision_tree_classifier.R | 258 +-- sparklyr-0.9.1/sparklyr/R/ml_classification_gbt_classifier.R | 340 ++-- sparklyr-0.9.1/sparklyr/R/ml_classification_linear_svc.R | 244 +-- sparklyr-0.9.1/sparklyr/R/ml_classification_logistic_regression.R | 520 ++---- sparklyr-0.9.1/sparklyr/R/ml_classification_multilayer_perceptron_classifier.R | 264 +-- sparklyr-0.9.1/sparklyr/R/ml_classification_naive_bayes.R | 223 +- sparklyr-0.9.1/sparklyr/R/ml_classification_one_vs_rest.R | 138 - sparklyr-0.9.1/sparklyr/R/ml_classification_random_forest_classifier.R | 305 +-- sparklyr-0.9.1/sparklyr/R/ml_clustering.R |only sparklyr-0.9.1/sparklyr/R/ml_clustering_bisecting_kmeans.R | 191 -- sparklyr-0.9.1/sparklyr/R/ml_clustering_gaussian_mixture.R | 182 +- sparklyr-0.9.1/sparklyr/R/ml_clustering_kmeans.R | 245 +-- sparklyr-0.9.1/sparklyr/R/ml_clustering_lda.R | 258 +-- sparklyr-0.9.1/sparklyr/R/ml_constructor_utils.R | 17 sparklyr-0.9.1/sparklyr/R/ml_evaluation_clustering.R | 98 - sparklyr-0.9.1/sparklyr/R/ml_evaluation_prediction.R | 221 +- sparklyr-0.9.1/sparklyr/R/ml_feature_binarizer.R | 69 sparklyr-0.9.1/sparklyr/R/ml_feature_bucketed_random_projection_lsh.R | 120 - sparklyr-0.9.1/sparklyr/R/ml_feature_bucketizer.R |only sparklyr-0.9.1/sparklyr/R/ml_feature_chisq_selector.R | 147 + sparklyr-0.9.1/sparklyr/R/ml_feature_count_vectorizer.R | 129 - sparklyr-0.9.1/sparklyr/R/ml_feature_dct.R | 52 sparklyr-0.9.1/sparklyr/R/ml_feature_elementwise_product.R | 70 sparklyr-0.9.1/sparklyr/R/ml_feature_feature_hasher.R | 102 - sparklyr-0.9.1/sparklyr/R/ml_feature_hashing_tf.R | 67 sparklyr-0.9.1/sparklyr/R/ml_feature_idf.R | 77 sparklyr-0.9.1/sparklyr/R/ml_feature_imputer.R | 100 - sparklyr-0.9.1/sparklyr/R/ml_feature_index_to_string.R | 65 sparklyr-0.9.1/sparklyr/R/ml_feature_interaction.R | 74 sparklyr-0.9.1/sparklyr/R/ml_feature_lsh_utils.R | 8 sparklyr-0.9.1/sparklyr/R/ml_feature_max_abs_scaler.R | 88 - sparklyr-0.9.1/sparklyr/R/ml_feature_min_max_scaler.R | 109 - sparklyr-0.9.1/sparklyr/R/ml_feature_minhash_lsh.R | 108 - sparklyr-0.9.1/sparklyr/R/ml_feature_ngram.R | 65 sparklyr-0.9.1/sparklyr/R/ml_feature_normalizer.R | 77 sparklyr-0.9.1/sparklyr/R/ml_feature_one_hot_encoder.R | 71 sparklyr-0.9.1/sparklyr/R/ml_feature_pca.R | 88 - sparklyr-0.9.1/sparklyr/R/ml_feature_polynomial_expansion.R | 74 sparklyr-0.9.1/sparklyr/R/ml_feature_quantile_discretizer.R |only sparklyr-0.9.1/sparklyr/R/ml_feature_r_formula.R | 95 - sparklyr-0.9.1/sparklyr/R/ml_feature_regex_tokenizer.R | 95 - sparklyr-0.9.1/sparklyr/R/ml_feature_sql_transformer.R | 101 - sparklyr-0.9.1/sparklyr/R/ml_feature_standard_scaler.R | 107 - sparklyr-0.9.1/sparklyr/R/ml_feature_stop_words_remover.R | 94 - sparklyr-0.9.1/sparklyr/R/ml_feature_string_indexer.R | 117 - sparklyr-0.9.1/sparklyr/R/ml_feature_string_indexer_model.R | 93 - sparklyr-0.9.1/sparklyr/R/ml_feature_tokenizer.R | 53 sparklyr-0.9.1/sparklyr/R/ml_feature_vector_assembler.R | 69 sparklyr-0.9.1/sparklyr/R/ml_feature_vector_indexer.R | 86 - sparklyr-0.9.1/sparklyr/R/ml_feature_vector_slicer.R | 79 - sparklyr-0.9.1/sparklyr/R/ml_feature_word2vec.R | 137 + sparklyr-0.9.1/sparklyr/R/ml_fpm_fpgrowth.R | 110 - sparklyr-0.9.1/sparklyr/R/ml_helpers.R | 4 sparklyr-0.9.1/sparklyr/R/ml_mapping_tables.R | 4 sparklyr-0.9.1/sparklyr/R/ml_model_aft_survival_regression.R |only sparklyr-0.9.1/sparklyr/R/ml_model_bisecting_kmeans.R |only sparklyr-0.9.1/sparklyr/R/ml_model_decision_tree.R | 65 sparklyr-0.9.1/sparklyr/R/ml_model_gaussian_mixture.R |only sparklyr-0.9.1/sparklyr/R/ml_model_generalized_linear_regression.R |only sparklyr-0.9.1/sparklyr/R/ml_model_gradient_boosted_trees.R | 91 - sparklyr-0.9.1/sparklyr/R/ml_model_isotonic_regression.R |only sparklyr-0.9.1/sparklyr/R/ml_model_kmeans.R |only sparklyr-0.9.1/sparklyr/R/ml_model_linear_regression.R |only sparklyr-0.9.1/sparklyr/R/ml_model_linear_svc.R |only sparklyr-0.9.1/sparklyr/R/ml_model_logistic_regression.R |only sparklyr-0.9.1/sparklyr/R/ml_model_naive_bayes.R |only sparklyr-0.9.1/sparklyr/R/ml_model_one_vs_rest.R |only sparklyr-0.9.1/sparklyr/R/ml_model_random_forest.R | 64 sparklyr-0.9.1/sparklyr/R/ml_model_utils.R | 43 sparklyr-0.9.1/sparklyr/R/ml_persistence.R | 31 sparklyr-0.9.1/sparklyr/R/ml_pipeline.R | 4 sparklyr-0.9.1/sparklyr/R/ml_pipeline_utils.R | 117 - sparklyr-0.9.1/sparklyr/R/ml_predictor.R | 21 sparklyr-0.9.1/sparklyr/R/ml_print_utils.R | 11 sparklyr-0.9.1/sparklyr/R/ml_recommendation_als.R | 324 ++-- sparklyr-0.9.1/sparklyr/R/ml_regression_aft_survival_regression.R | 262 +-- sparklyr-0.9.1/sparklyr/R/ml_regression_decision_tree_regressor.R | 230 +- sparklyr-0.9.1/sparklyr/R/ml_regression_gbt_regressor.R | 292 +-- sparklyr-0.9.1/sparklyr/R/ml_regression_generalized_linear_regression.R | 478 ++---- sparklyr-0.9.1/sparklyr/R/ml_regression_isotonic_regression.R | 159 -- sparklyr-0.9.1/sparklyr/R/ml_regression_linear_regression.R | 324 +--- sparklyr-0.9.1/sparklyr/R/ml_regression_random_forest_regressor.R | 266 +-- sparklyr-0.9.1/sparklyr/R/ml_stat.R | 30 sparklyr-0.9.1/sparklyr/R/ml_summary.R | 4 sparklyr-0.9.1/sparklyr/R/ml_transformation_methods.R | 17 sparklyr-0.9.1/sparklyr/R/ml_transformer_and_estimator.R | 47 sparklyr-0.9.1/sparklyr/R/ml_tuning.R | 377 ++-- sparklyr-0.9.1/sparklyr/R/ml_tuning_cross_validator.R | 135 - sparklyr-0.9.1/sparklyr/R/ml_tuning_train_validation_split.R | 136 - sparklyr-0.9.1/sparklyr/R/ml_utils.R | 19 sparklyr-0.9.1/sparklyr/R/ml_validator_utils.R | 143 - sparklyr-0.9.1/sparklyr/R/mutation.R | 2 sparklyr-0.9.1/sparklyr/R/na_actions.R | 12 sparklyr-0.9.1/sparklyr/R/new_model_multilayer_perceptron.R |only sparklyr-0.9.1/sparklyr/R/precondition.R | 2 sparklyr-0.9.1/sparklyr/R/sdf_interface.R | 25 sparklyr-0.9.1/sparklyr/R/sdf_ml.R | 2 sparklyr-0.9.1/sparklyr/R/sdf_saveload.R | 6 sparklyr-0.9.1/sparklyr/R/sdf_sequence.R | 8 sparklyr-0.9.1/sparklyr/R/sdf_sql.R | 15 sparklyr-0.9.1/sparklyr/R/sdf_streaming.R |only sparklyr-0.9.1/sparklyr/R/sdf_wrapper.R | 45 sparklyr-0.9.1/sparklyr/R/shell_connection.R | 229 ++ sparklyr-0.9.1/sparklyr/R/spark_apply.R | 306 ++- sparklyr-0.9.1/sparklyr/R/spark_apply_legacy.R |only sparklyr-0.9.1/sparklyr/R/spark_compile.R | 13 sparklyr-0.9.1/sparklyr/R/spark_connection.R | 55 sparklyr-0.9.1/sparklyr/R/spark_context_config.R | 3 sparklyr-0.9.1/sparklyr/R/spark_gateway.R | 30 sparklyr-0.9.1/sparklyr/R/spark_hive.R | 53 sparklyr-0.9.1/sparklyr/R/spark_home.R | 9 sparklyr-0.9.1/sparklyr/R/spark_invoke.R | 24 sparklyr-0.9.1/sparklyr/R/spark_submit.R |only sparklyr-0.9.1/sparklyr/R/spark_utils.R | 2 sparklyr-0.9.1/sparklyr/R/spark_version.R | 17 sparklyr-0.9.1/sparklyr/R/stream_data.R |only sparklyr-0.9.1/sparklyr/R/stream_job.R |only sparklyr-0.9.1/sparklyr/R/stream_operations.R |only sparklyr-0.9.1/sparklyr/R/stream_shiny.R |only sparklyr-0.9.1/sparklyr/R/stream_view.R |only sparklyr-0.9.1/sparklyr/R/sysdata.rda |binary sparklyr-0.9.1/sparklyr/R/test_connection.R | 21 sparklyr-0.9.1/sparklyr/R/tidiers_ml_linear_models.R | 75 sparklyr-0.9.1/sparklyr/R/tidiers_ml_logistic_regression.R |only sparklyr-0.9.1/sparklyr/R/tidiers_ml_naive_bayes.R |only sparklyr-0.9.1/sparklyr/R/tidiers_ml_tree_models.R |only sparklyr-0.9.1/sparklyr/R/tidiers_ml_unsupervised_models.R |only sparklyr-0.9.1/sparklyr/R/tidiers_utils.R | 38 sparklyr-0.9.1/sparklyr/R/utils.R | 29 sparklyr-0.9.1/sparklyr/R/worker_apply.R | 70 sparklyr-0.9.1/sparklyr/R/worker_connect.R | 12 sparklyr-0.9.1/sparklyr/R/worker_connection.R | 2 sparklyr-0.9.1/sparklyr/R/worker_main.R | 2 sparklyr-0.9.1/sparklyr/R/zzz.R | 6 sparklyr-0.9.1/sparklyr/inst/conf/config-template.yml | 5 sparklyr-0.9.1/sparklyr/inst/extdata/versions.json | 20 sparklyr-0.9.1/sparklyr/inst/icons/livy-ui.png |only sparklyr-0.9.1/sparklyr/inst/java/commons-csv-1.1.jar |only sparklyr-0.9.1/sparklyr/inst/java/spark-csv_2.10-1.5.0.jar |only sparklyr-0.9.1/sparklyr/inst/java/sparklyr-1.5-2.10.jar |binary sparklyr-0.9.1/sparklyr/inst/java/sparklyr-1.6-2.10.jar |binary sparklyr-0.9.1/sparklyr/inst/java/sparklyr-2.0-2.11.jar |binary sparklyr-0.9.1/sparklyr/inst/java/sparklyr-2.1-2.11.jar |binary sparklyr-0.9.1/sparklyr/inst/java/sparklyr-2.2-2.11.jar |binary sparklyr-0.9.1/sparklyr/inst/java/sparklyr-2.3-2.11.jar |binary sparklyr-0.9.1/sparklyr/inst/livy/spark-1.5.2/backend.scala | 157 +- sparklyr-0.9.1/sparklyr/inst/livy/spark-1.5.2/channel.scala | 12 sparklyr-0.9.1/sparklyr/inst/livy/spark-1.5.2/invoke.scala | 8 sparklyr-0.9.1/sparklyr/inst/livy/spark-1.5.2/logger.scala | 32 sparklyr-0.9.1/sparklyr/inst/livy/spark-1.5.2/rscript.scala |only sparklyr-0.9.1/sparklyr/inst/livy/spark-1.5.2/serializer.scala | 21 sparklyr-0.9.1/sparklyr/inst/livy/spark-1.5.2/sqlutils.scala | 4 sparklyr-0.9.1/sparklyr/inst/livy/spark-1.5.2/utils.scala | 29 sparklyr-0.9.1/sparklyr/inst/livy/spark-1.6.0/applyutils.scala | 15 sparklyr-0.9.1/sparklyr/inst/livy/spark-1.6.0/rscript.scala | 29 sparklyr-0.9.1/sparklyr/inst/livy/spark-1.6.0/sources.scala | 404 ++++- sparklyr-0.9.1/sparklyr/inst/livy/spark-1.6.0/workerapply.scala |only sparklyr-0.9.1/sparklyr/inst/livy/spark-1.6.0/workerhelper.scala | 54 sparklyr-0.9.1/sparklyr/inst/livy/spark-1.6.0/workerrdd.scala | 116 - sparklyr-0.9.1/sparklyr/inst/livy/spark-2.0.0/applyutils.scala |only sparklyr-0.9.1/sparklyr/inst/streams |only sparklyr-0.9.1/sparklyr/java/spark-1.5.2/backend.scala | 157 +- sparklyr-0.9.1/sparklyr/java/spark-1.5.2/channel.scala | 12 sparklyr-0.9.1/sparklyr/java/spark-1.5.2/invoke.scala | 8 sparklyr-0.9.1/sparklyr/java/spark-1.5.2/rscript.scala |only sparklyr-0.9.1/sparklyr/java/spark-1.5.2/serializer.scala | 21 sparklyr-0.9.1/sparklyr/java/spark-1.5.2/shell.scala | 13 sparklyr-0.9.1/sparklyr/java/spark-1.5.2/sqlutils.scala | 4 sparklyr-0.9.1/sparklyr/java/spark-1.5.2/test.scala | 4 sparklyr-0.9.1/sparklyr/java/spark-1.5.2/utils.scala | 29 sparklyr-0.9.1/sparklyr/java/spark-1.6.0/applyutils.scala | 15 sparklyr-0.9.1/sparklyr/java/spark-1.6.0/rscript.scala | 29 sparklyr-0.9.1/sparklyr/java/spark-1.6.0/sources.scala | 404 ++++- sparklyr-0.9.1/sparklyr/java/spark-1.6.0/workerapply.scala |only sparklyr-0.9.1/sparklyr/java/spark-1.6.0/workerhelper.scala | 54 sparklyr-0.9.1/sparklyr/java/spark-1.6.0/workerrdd.scala | 116 - sparklyr-0.9.1/sparklyr/java/spark-2.0.0/applyutils.scala |only sparklyr-0.9.1/sparklyr/man/ensure.Rd | 4 sparklyr-0.9.1/sparklyr/man/ft_binarizer.Rd | 16 sparklyr-0.9.1/sparklyr/man/ft_bucketizer.Rd | 18 sparklyr-0.9.1/sparklyr/man/ft_chisq_selector.Rd | 11 sparklyr-0.9.1/sparklyr/man/ft_count_vectorizer.Rd | 9 sparklyr-0.9.1/sparklyr/man/ft_dct.Rd | 3 sparklyr-0.9.1/sparklyr/man/ft_elementwise_product.Rd | 5 sparklyr-0.9.1/sparklyr/man/ft_feature_hasher.Rd | 6 sparklyr-0.9.1/sparklyr/man/ft_hashing_tf.Rd | 5 sparklyr-0.9.1/sparklyr/man/ft_idf.Rd | 7 sparklyr-0.9.1/sparklyr/man/ft_imputer.Rd | 6 sparklyr-0.9.1/sparklyr/man/ft_index_to_string.Rd | 5 sparklyr-0.9.1/sparklyr/man/ft_interaction.Rd | 5 sparklyr-0.9.1/sparklyr/man/ft_lsh.Rd | 13 sparklyr-0.9.1/sparklyr/man/ft_max_abs_scaler.Rd | 22 sparklyr-0.9.1/sparklyr/man/ft_min_max_scaler.Rd | 23 sparklyr-0.9.1/sparklyr/man/ft_ngram.Rd | 7 sparklyr-0.9.1/sparklyr/man/ft_normalizer.Rd | 3 sparklyr-0.9.1/sparklyr/man/ft_one_hot_encoder.Rd | 5 sparklyr-0.9.1/sparklyr/man/ft_pca.Rd | 11 sparklyr-0.9.1/sparklyr/man/ft_polynomial_expansion.Rd | 5 sparklyr-0.9.1/sparklyr/man/ft_quantile_discretizer.Rd | 5 sparklyr-0.9.1/sparklyr/man/ft_r_formula.Rd | 7 sparklyr-0.9.1/sparklyr/man/ft_regex_tokenizer.Rd | 9 sparklyr-0.9.1/sparklyr/man/ft_standard_scaler.Rd | 23 sparklyr-0.9.1/sparklyr/man/ft_stop_words_remover.Rd | 6 sparklyr-0.9.1/sparklyr/man/ft_string_indexer.Rd | 15 sparklyr-0.9.1/sparklyr/man/ft_tokenizer.Rd | 6 sparklyr-0.9.1/sparklyr/man/ft_vector_assembler.Rd | 3 sparklyr-0.9.1/sparklyr/man/ft_vector_indexer.Rd | 8 sparklyr-0.9.1/sparklyr/man/ft_vector_slicer.Rd | 5 sparklyr-0.9.1/sparklyr/man/ft_word2vec.Rd | 11 sparklyr-0.9.1/sparklyr/man/invoke.Rd | 3 sparklyr-0.9.1/sparklyr/man/invoke_method.Rd | 4 sparklyr-0.9.1/sparklyr/man/livy_config.Rd | 12 sparklyr-0.9.1/sparklyr/man/livy_install.Rd | 3 sparklyr-0.9.1/sparklyr/man/ml-tuning.Rd | 52 sparklyr-0.9.1/sparklyr/man/ml_aft_survival_regression.Rd | 15 sparklyr-0.9.1/sparklyr/man/ml_als.Rd | 45 sparklyr-0.9.1/sparklyr/man/ml_bisecting_kmeans.Rd | 7 sparklyr-0.9.1/sparklyr/man/ml_chisquare_test.Rd | 10 sparklyr-0.9.1/sparklyr/man/ml_clustering_evaluator.Rd | 29 sparklyr-0.9.1/sparklyr/man/ml_corr.Rd | 10 sparklyr-0.9.1/sparklyr/man/ml_decision_tree.Rd | 36 sparklyr-0.9.1/sparklyr/man/ml_gaussian_mixture.Rd | 13 sparklyr-0.9.1/sparklyr/man/ml_generalized_linear_regression.Rd | 47 sparklyr-0.9.1/sparklyr/man/ml_glm_tidiers.Rd | 9 sparklyr-0.9.1/sparklyr/man/ml_gradient_boosted_trees.Rd | 69 sparklyr-0.9.1/sparklyr/man/ml_isotonic_regression.Rd | 3 sparklyr-0.9.1/sparklyr/man/ml_kmeans.Rd | 7 sparklyr-0.9.1/sparklyr/man/ml_lda.Rd | 12 sparklyr-0.9.1/sparklyr/man/ml_linear_regression.Rd | 22 sparklyr-0.9.1/sparklyr/man/ml_linear_svc.Rd | 5 sparklyr-0.9.1/sparklyr/man/ml_logistic_regression.Rd | 36 sparklyr-0.9.1/sparklyr/man/ml_logistic_regression_tidiers.Rd |only sparklyr-0.9.1/sparklyr/man/ml_multilayer_perceptron_classifier.Rd | 20 sparklyr-0.9.1/sparklyr/man/ml_naive_bayes.Rd | 5 sparklyr-0.9.1/sparklyr/man/ml_naive_bayes_tidiers.Rd |only sparklyr-0.9.1/sparklyr/man/ml_one_vs_rest.Rd | 8 sparklyr-0.9.1/sparklyr/man/ml_random_forest.Rd | 44 sparklyr-0.9.1/sparklyr/man/ml_tree_tidiers.Rd |only sparklyr-0.9.1/sparklyr/man/ml_unsupervised_tidiers.Rd |only sparklyr-0.9.1/sparklyr/man/reactiveSpark.Rd |only sparklyr-0.9.1/sparklyr/man/reexports.Rd | 2 sparklyr-0.9.1/sparklyr/man/sdf_collect.Rd |only sparklyr-0.9.1/sparklyr/man/sdf_copy_to.Rd | 2 sparklyr-0.9.1/sparklyr/man/sdf_dim.Rd | 1 sparklyr-0.9.1/sparklyr/man/sdf_is_streaming.Rd |only sparklyr-0.9.1/sparklyr/man/sdf_mutate.Rd | 2 sparklyr-0.9.1/sparklyr/man/sdf_partition.Rd | 5 sparklyr-0.9.1/sparklyr/man/sdf_pivot.Rd | 22 sparklyr-0.9.1/sparklyr/man/sdf_register.Rd | 1 sparklyr-0.9.1/sparklyr/man/sdf_residuals.Rd | 4 sparklyr-0.9.1/sparklyr/man/sdf_sample.Rd | 1 sparklyr-0.9.1/sparklyr/man/sdf_sort.Rd | 1 sparklyr-0.9.1/sparklyr/man/sdf_sql.Rd |only sparklyr-0.9.1/sparklyr/man/spark-api.Rd | 4 sparklyr-0.9.1/sparklyr/man/spark-connections.Rd | 25 sparklyr-0.9.1/sparklyr/man/spark_apply.Rd | 34 sparklyr-0.9.1/sparklyr/man/spark_compile.Rd | 4 sparklyr-0.9.1/sparklyr/man/spark_config_kubernetes.Rd |only sparklyr-0.9.1/sparklyr/man/spark_config_settings.Rd |only sparklyr-0.9.1/sparklyr/man/spark_connection_find.Rd |only sparklyr-0.9.1/sparklyr/man/spark_home_set.Rd | 5 sparklyr-0.9.1/sparklyr/man/spark_install.Rd | 2 sparklyr-0.9.1/sparklyr/man/spark_load_table.Rd | 3 sparklyr-0.9.1/sparklyr/man/spark_read_csv.Rd | 10 sparklyr-0.9.1/sparklyr/man/spark_read_jdbc.Rd | 3 sparklyr-0.9.1/sparklyr/man/spark_read_json.Rd | 3 sparklyr-0.9.1/sparklyr/man/spark_read_libsvm.Rd | 3 sparklyr-0.9.1/sparklyr/man/spark_read_orc.Rd |only sparklyr-0.9.1/sparklyr/man/spark_read_parquet.Rd | 6 sparklyr-0.9.1/sparklyr/man/spark_read_source.Rd | 3 sparklyr-0.9.1/sparklyr/man/spark_read_table.Rd | 3 sparklyr-0.9.1/sparklyr/man/spark_read_text.Rd | 3 sparklyr-0.9.1/sparklyr/man/spark_save_table.Rd | 3 sparklyr-0.9.1/sparklyr/man/spark_write_csv.Rd | 10 sparklyr-0.9.1/sparklyr/man/spark_write_jdbc.Rd | 3 sparklyr-0.9.1/sparklyr/man/spark_write_json.Rd | 3 sparklyr-0.9.1/sparklyr/man/spark_write_orc.Rd |only sparklyr-0.9.1/sparklyr/man/spark_write_parquet.Rd | 3 sparklyr-0.9.1/sparklyr/man/spark_write_source.Rd | 3 sparklyr-0.9.1/sparklyr/man/spark_write_table.Rd | 3 sparklyr-0.9.1/sparklyr/man/spark_write_text.Rd | 3 sparklyr-0.9.1/sparklyr/man/sql-transformer.Rd | 7 sparklyr-0.9.1/sparklyr/man/stream_find.Rd |only sparklyr-0.9.1/sparklyr/man/stream_generate_test.Rd |only sparklyr-0.9.1/sparklyr/man/stream_id.Rd |only sparklyr-0.9.1/sparklyr/man/stream_name.Rd |only sparklyr-0.9.1/sparklyr/man/stream_read_csv.Rd |only sparklyr-0.9.1/sparklyr/man/stream_read_jdbc.Rd |only sparklyr-0.9.1/sparklyr/man/stream_read_json.Rd |only sparklyr-0.9.1/sparklyr/man/stream_read_kafka.Rd |only sparklyr-0.9.1/sparklyr/man/stream_read_orc.Rd |only sparklyr-0.9.1/sparklyr/man/stream_read_parquet.Rd |only sparklyr-0.9.1/sparklyr/man/stream_read_text.Rd |only sparklyr-0.9.1/sparklyr/man/stream_render.Rd |only sparklyr-0.9.1/sparklyr/man/stream_stats.Rd |only sparklyr-0.9.1/sparklyr/man/stream_stop.Rd |only sparklyr-0.9.1/sparklyr/man/stream_trigger_continuous.Rd |only sparklyr-0.9.1/sparklyr/man/stream_trigger_interval.Rd |only sparklyr-0.9.1/sparklyr/man/stream_view.Rd |only sparklyr-0.9.1/sparklyr/man/stream_watermark.Rd |only sparklyr-0.9.1/sparklyr/man/stream_write_csv.Rd |only sparklyr-0.9.1/sparklyr/man/stream_write_jdbc.Rd |only sparklyr-0.9.1/sparklyr/man/stream_write_json.Rd |only sparklyr-0.9.1/sparklyr/man/stream_write_kafka.Rd |only sparklyr-0.9.1/sparklyr/man/stream_write_memory.Rd |only sparklyr-0.9.1/sparklyr/man/stream_write_orc.Rd |only sparklyr-0.9.1/sparklyr/man/stream_write_parquet.Rd |only sparklyr-0.9.1/sparklyr/man/stream_write_text.Rd |only sparklyr-0.9.1/sparklyr/tests/testthat.R | 21 sparklyr-0.9.1/sparklyr/tests/testthat/batch |only sparklyr-0.9.1/sparklyr/tests/testthat/helper-initialize.R | 77 sparklyr-0.9.1/sparklyr/tests/testthat/logs/log4j.spark.log | 360 ++++ sparklyr-0.9.1/sparklyr/tests/testthat/output/print/binary-classification-evaluator.txt |only sparklyr-0.9.1/sparklyr/tests/testthat/output/print/cv1.txt |only sparklyr-0.9.1/sparklyr/tests/testthat/output/print/cv2.txt |only sparklyr-0.9.1/sparklyr/tests/testthat/output/print/cv3.txt |only sparklyr-0.9.1/sparklyr/tests/testthat/output/print/multiclass-classification-evaluator.txt |only sparklyr-0.9.1/sparklyr/tests/testthat/output/print/regression-evaluator.txt |only sparklyr-0.9.1/sparklyr/tests/testthat/output/print/tvs1.txt |only sparklyr-0.9.1/sparklyr/tests/testthat/output/print/tvs2.txt |only sparklyr-0.9.1/sparklyr/tests/testthat/output/print/tvs3.txt |only sparklyr-0.9.1/sparklyr/tests/testthat/test-binds.R | 5 sparklyr-0.9.1/sparklyr/tests/testthat/test-broom-bisecting_kmeans.R |only sparklyr-0.9.1/sparklyr/tests/testthat/test-broom-decision_tree.R |only sparklyr-0.9.1/sparklyr/tests/testthat/test-broom-gaussian_mixture.R |only sparklyr-0.9.1/sparklyr/tests/testthat/test-broom-gradient_boosted_trees.R |only sparklyr-0.9.1/sparklyr/tests/testthat/test-broom-kmeans.R |only sparklyr-0.9.1/sparklyr/tests/testthat/test-broom-logistic_regression.R |only sparklyr-0.9.1/sparklyr/tests/testthat/test-broom-naive_bayes.R |only sparklyr-0.9.1/sparklyr/tests/testthat/test-broom-random_forest.R |only sparklyr-0.9.1/sparklyr/tests/testthat/test-broom.R | 10 sparklyr-0.9.1/sparklyr/tests/testthat/test-column-extraction.R | 2 sparklyr-0.9.1/sparklyr/tests/testthat/test-config.R | 41 sparklyr-0.9.1/sparklyr/tests/testthat/test-connect-shell.R | 2 sparklyr-0.9.1/sparklyr/tests/testthat/test-copy-to.R | 15 sparklyr-0.9.1/sparklyr/tests/testthat/test-dbi.R | 2 sparklyr-0.9.1/sparklyr/tests/testthat/test-feature-vector-indexer.R | 22 sparklyr-0.9.1/sparklyr/tests/testthat/test-invoke.R | 6 sparklyr-0.9.1/sparklyr/tests/testthat/test-kubernetes-config.R |only sparklyr-0.9.1/sparklyr/tests/testthat/test-livy-config.R |only sparklyr-0.9.1/sparklyr/tests/testthat/test-ml-als.R | 58 sparklyr-0.9.1/sparklyr/tests/testthat/test-ml-classification-decision-tree-classifier.R |only sparklyr-0.9.1/sparklyr/tests/testthat/test-ml-classification-gbt-classifier.R |only sparklyr-0.9.1/sparklyr/tests/testthat/test-ml-classification-linear-svc.R | 51 sparklyr-0.9.1/sparklyr/tests/testthat/test-ml-classification-logistic-regression.R | 286 +-- sparklyr-0.9.1/sparklyr/tests/testthat/test-ml-classification-multilayer-perceptron.R | 49 sparklyr-0.9.1/sparklyr/tests/testthat/test-ml-classification-naive-bayes.R | 44 sparklyr-0.9.1/sparklyr/tests/testthat/test-ml-classification-one-vs-rest.R | 47 sparklyr-0.9.1/sparklyr/tests/testthat/test-ml-classification-random-forest-classifier.R |only sparklyr-0.9.1/sparklyr/tests/testthat/test-ml-clustering-bisecting-kmeans.R | 49 sparklyr-0.9.1/sparklyr/tests/testthat/test-ml-clustering-gaussian-mixture.R | 29 sparklyr-0.9.1/sparklyr/tests/testthat/test-ml-clustering-kmeans.R | 53 sparklyr-0.9.1/sparklyr/tests/testthat/test-ml-clustering-lda.R | 56 sparklyr-0.9.1/sparklyr/tests/testthat/test-ml-evaluation.R | 38 sparklyr-0.9.1/sparklyr/tests/testthat/test-ml-feature-binarizer.R |only sparklyr-0.9.1/sparklyr/tests/testthat/test-ml-feature-bucketizer.R | 110 - sparklyr-0.9.1/sparklyr/tests/testthat/test-ml-feature-chisq-selector.R | 30 sparklyr-0.9.1/sparklyr/tests/testthat/test-ml-feature-count-vectorizer.R |only sparklyr-0.9.1/sparklyr/tests/testthat/test-ml-feature-dct.R | 62 sparklyr-0.9.1/sparklyr/tests/testthat/test-ml-feature-elementwise-product.R |only sparklyr-0.9.1/sparklyr/tests/testthat/test-ml-feature-feature-hasher.R | 25 sparklyr-0.9.1/sparklyr/tests/testthat/test-ml-feature-hashing-tf.R |only sparklyr-0.9.1/sparklyr/tests/testthat/test-ml-feature-idf.R | 19 sparklyr-0.9.1/sparklyr/tests/testthat/test-ml-feature-imputer.R | 21 sparklyr-0.9.1/sparklyr/tests/testthat/test-ml-feature-interaction.R | 19 sparklyr-0.9.1/sparklyr/tests/testthat/test-ml-feature-max-abs-scaler.R | 19 sparklyr-0.9.1/sparklyr/tests/testthat/test-ml-feature-min-max-scaler.R | 20 sparklyr-0.9.1/sparklyr/tests/testthat/test-ml-feature-minhash-lsh.R | 76 sparklyr-0.9.1/sparklyr/tests/testthat/test-ml-feature-ngram.R | 19 sparklyr-0.9.1/sparklyr/tests/testthat/test-ml-feature-normalizer.R | 27 sparklyr-0.9.1/sparklyr/tests/testthat/test-ml-feature-one-hot-encoder.R |only sparklyr-0.9.1/sparklyr/tests/testthat/test-ml-feature-pca.R | 39 sparklyr-0.9.1/sparklyr/tests/testthat/test-ml-feature-polynomial-expansion.R | 22 sparklyr-0.9.1/sparklyr/tests/testthat/test-ml-feature-quantile-discretizer.R |only sparklyr-0.9.1/sparklyr/tests/testthat/test-ml-feature-r-formula.R | 17 sparklyr-0.9.1/sparklyr/tests/testthat/test-ml-feature-random-projection-lsh.R | 64 sparklyr-0.9.1/sparklyr/tests/testthat/test-ml-feature-regex-tokenizer.R |only sparklyr-0.9.1/sparklyr/tests/testthat/test-ml-feature-sql-transformer.R | 12 sparklyr-0.9.1/sparklyr/tests/testthat/test-ml-feature-standard-scaler.R | 19 sparklyr-0.9.1/sparklyr/tests/testthat/test-ml-feature-stop-words-remover.R | 23 sparklyr-0.9.1/sparklyr/tests/testthat/test-ml-feature-string-indexer.R | 50 sparklyr-0.9.1/sparklyr/tests/testthat/test-ml-feature-tokenizer.R |only sparklyr-0.9.1/sparklyr/tests/testthat/test-ml-feature-vector-assembler.R |only sparklyr-0.9.1/sparklyr/tests/testthat/test-ml-feature-vector-slicer.R | 20 sparklyr-0.9.1/sparklyr/tests/testthat/test-ml-feature-word2vec.R | 39 sparklyr-0.9.1/sparklyr/tests/testthat/test-ml-fpm-fpgrowth.R | 22 sparklyr-0.9.1/sparklyr/tests/testthat/test-ml-pipeline.R | 4 sparklyr-0.9.1/sparklyr/tests/testthat/test-ml-print-methods.R | 38 sparklyr-0.9.1/sparklyr/tests/testthat/test-ml-regression-decision-tree-regressor.R |only sparklyr-0.9.1/sparklyr/tests/testthat/test-ml-regression-gbt-regressor.R |only sparklyr-0.9.1/sparklyr/tests/testthat/test-ml-regression-generalized-linear-regression.R | 81 - sparklyr-0.9.1/sparklyr/tests/testthat/test-ml-regression-linear-regression.R | 79 - sparklyr-0.9.1/sparklyr/tests/testthat/test-ml-regression-random-forest-regressor.R |only sparklyr-0.9.1/sparklyr/tests/testthat/test-ml-regression-survival-regression.R | 53 sparklyr-0.9.1/sparklyr/tests/testthat/test-ml-supervised-decision-tree.R | 93 - sparklyr-0.9.1/sparklyr/tests/testthat/test-ml-supervised-gradient-boosted-trees.R | 128 - sparklyr-0.9.1/sparklyr/tests/testthat/test-ml-supervised-isotonic-regression.R | 43 sparklyr-0.9.1/sparklyr/tests/testthat/test-ml-supervised-random-forest.R | 91 - sparklyr-0.9.1/sparklyr/tests/testthat/test-ml-tree-feature-importances.R |only sparklyr-0.9.1/sparklyr/tests/testthat/test-ml-tuning-cross-validator.R |only sparklyr-0.9.1/sparklyr/tests/testthat/test-ml-tuning-train-validation-split.R |only sparklyr-0.9.1/sparklyr/tests/testthat/test-read-write.R | 19 sparklyr-0.9.1/sparklyr/tests/testthat/test-serialization.R | 6 sparklyr-0.9.1/sparklyr/tests/testthat/test-spark-apply-config.R |only sparklyr-0.9.1/sparklyr/tests/testthat/test-spark-apply.R | 62 sparklyr-0.9.1/sparklyr/tests/testthat/test-stream.R |only sparklyr-0.9.1/sparklyr/tests/testthat/test-submit.R |only 457 files changed, 11007 insertions(+), 7949 deletions(-)
Title: Quadratic Programming Solver using the 'OSQP' Library
Description: Provides bindings to the 'OSQP' solver. The 'OSQP' solver is a numerical optimization package or solving convex quadratic programs written in 'C' and based on the alternating direction method of multipliers, 'ADMM'. B. Stellato, G. Banjac, P. Goulart, A. Bemporad, S. Boyd (2018) <arXiv:1711.08013>.
Author: Bartolomeo Stellato [cre, aut, ctb, cph],
Goran Banjac [aut, ctb, cph],
Paul Goulart [aut, ctb, cph],
Stephen Boyd [aut, ctb, cph],
Eric Anderson [ctb]
Maintainer: Bartolomeo Stellato <bartolomeo.stellato@gmail.com>
Diff between osqp versions 0.4.0 dated 2018-07-23 and 0.4.1 dated 2018-09-27
osqp-0.4.0/osqp/src/osqp_sources/lin_sys/direct/qdldl/qdldl_sources/julia/qdldl.jl |only osqp-0.4.1/osqp/DESCRIPTION | 8 - osqp-0.4.1/osqp/MD5 | 80 +++++----- osqp-0.4.1/osqp/NEWS.md | 8 + osqp-0.4.1/osqp/src/osqp_sources/CHANGELOG.md | 9 + osqp-0.4.1/osqp/src/osqp_sources/LICENSE | 2 osqp-0.4.1/osqp/src/osqp_sources/NOTICE | 2 osqp-0.4.1/osqp/src/osqp_sources/README.md | 2 osqp-0.4.1/osqp/src/osqp_sources/ci/appveyor/deploy.cmd | 8 - osqp-0.4.1/osqp/src/osqp_sources/ci/travis/deploy.sh | 31 +++ osqp-0.4.1/osqp/src/osqp_sources/docs/conf.py | 2 osqp-0.4.1/osqp/src/osqp_sources/docs/doxygen.conf | 2 osqp-0.4.1/osqp/src/osqp_sources/docs/get_started/CC++.rst | 2 osqp-0.4.1/osqp/src/osqp_sources/docs/get_started/matlab.rst | 2 osqp-0.4.1/osqp/src/osqp_sources/docs/get_started/sources.rst | 30 ++- osqp-0.4.1/osqp/src/osqp_sources/docs/interfaces/status_values.rst | 18 ++ osqp-0.4.1/osqp/src/osqp_sources/include/constants.h | 2 osqp-0.4.1/osqp/src/osqp_sources/include/ctrlc.h | 6 osqp-0.4.1/osqp/src/osqp_sources/include/util.h | 4 osqp-0.4.1/osqp/src/osqp_sources/lin_sys/direct/CMakeLists.txt | 5 osqp-0.4.1/osqp/src/osqp_sources/lin_sys/direct/qdldl/qdldl_interface.c | 45 +++-- osqp-0.4.1/osqp/src/osqp_sources/lin_sys/direct/qdldl/qdldl_interface.h | 17 +- osqp-0.4.1/osqp/src/osqp_sources/lin_sys/direct/qdldl/qdldl_sources/CHANGELOG.md | 7 osqp-0.4.1/osqp/src/osqp_sources/lin_sys/direct/qdldl/qdldl_sources/CMakeLists.txt | 6 osqp-0.4.1/osqp/src/osqp_sources/lin_sys/direct/qdldl/qdldl_sources/README.md | 4 osqp-0.4.1/osqp/src/osqp_sources/lin_sys/direct/qdldl/qdldl_sources/configure/qdldl_types.h.in | 8 - osqp-0.4.1/osqp/src/osqp_sources/lin_sys/direct/qdldl/qdldl_sources/examples/julia/example.jl | 2 osqp-0.4.1/osqp/src/osqp_sources/lin_sys/direct/qdldl/qdldl_sources/julia/QDLDL.jl |only osqp-0.4.1/osqp/src/osqp_sources/lin_sys/direct/qdldl/qdldl_sources/julia/README.md | 2 osqp-0.4.1/osqp/src/osqp_sources/lin_sys/direct/qdldl/qdldl_sources/julia/example.jl | 15 + osqp-0.4.1/osqp/src/osqp_sources/lin_sys/direct/qdldl/qdldl_sources/tests/julia/test.jl | 2 osqp-0.4.1/osqp/src/osqp_sources/lin_sys/direct/qdldl/qdldl_sources/tests/test_rank_deficient.h | 3 osqp-0.4.1/osqp/src/osqp_sources/lin_sys/direct/qdldl/qdldl_sources/tests/test_sym_structure.h | 3 osqp-0.4.1/osqp/src/osqp_sources/lin_sys/direct/qdldl/qdldl_sources/tests/test_tril_structure.h | 3 osqp-0.4.1/osqp/src/osqp_sources/src/auxil.c | 4 osqp-0.4.1/osqp/src/osqp_sources/src/ctrlc.c | 22 +- osqp-0.4.1/osqp/src/osqp_sources/src/osqp.c | 30 +-- osqp-0.4.1/osqp/src/osqp_sources/src/polish.c | 2 osqp-0.4.1/osqp/src/osqp_sources/src/util.c | 12 - osqp-0.4.1/osqp/src/osqp_sources/tests/CMakeLists.txt | 6 osqp-0.4.1/osqp/src/osqp_sources/tests/non_cvx/generate_problem.py | 4 osqp-0.4.1/osqp/src/osqp_sources/tests/non_cvx/test_non_cvx.h | 12 + 42 files changed, 268 insertions(+), 164 deletions(-)
Title: Quickly Explore Your Data Using 'ggplot2' and Summary Tables
Description: Quickly and easily perform exploratory data analysis by uploading your
data as a 'csv' file. Start generating insights using 'ggplot2' plots and
'table1' tables with descriptive stats, all using an easy-to-use point and click
'Shiny' interface.
Author: Samer Mouksassi [aut, cre],
Dean Attali [aut],
Benjamin Rich [aut] (provided summary stats tables tab code),
Michael Sachs [aut] (provided ggkm code)
Maintainer: Samer Mouksassi <samermouksassi@gmail.com>
Diff between ggquickeda versions 0.1.0 dated 2018-04-25 and 0.1.1 dated 2018-09-27
ggquickeda-0.1.0/ggquickeda/R/table1.R |only ggquickeda-0.1.0/ggquickeda/man/label.Rd |only ggquickeda-0.1.0/ggquickeda/man/parse.abbrev.render.code.Rd |only ggquickeda-0.1.0/ggquickeda/man/render.categorical.default.Rd |only ggquickeda-0.1.0/ggquickeda/man/render.continuous.default.Rd |only ggquickeda-0.1.0/ggquickeda/man/render.default.Rd |only ggquickeda-0.1.0/ggquickeda/man/render.missing.default.Rd |only ggquickeda-0.1.0/ggquickeda/man/render.strat.Rd |only ggquickeda-0.1.0/ggquickeda/man/render.varlabel.Rd |only ggquickeda-0.1.0/ggquickeda/man/signif_pad.Rd |only ggquickeda-0.1.0/ggquickeda/man/stats.apply.rounding.Rd |only ggquickeda-0.1.0/ggquickeda/man/stats.default.Rd |only ggquickeda-0.1.0/ggquickeda/man/subsetp.Rd |only ggquickeda-0.1.0/ggquickeda/man/table.rows.Rd |only ggquickeda-0.1.0/ggquickeda/man/table1.Rd |only ggquickeda-0.1.0/ggquickeda/man/units.Rd |only ggquickeda-0.1.1/ggquickeda/DESCRIPTION | 29 ggquickeda-0.1.1/ggquickeda/MD5 | 49 ggquickeda-0.1.1/ggquickeda/NAMESPACE | 30 ggquickeda-0.1.1/ggquickeda/NEWS.md | 19 ggquickeda-0.1.1/ggquickeda/README.md | 2 ggquickeda-0.1.1/ggquickeda/build/vignette.rds |binary ggquickeda-0.1.1/ggquickeda/inst/doc/AdditionalPlotsStats.html | 4 ggquickeda-0.1.1/ggquickeda/inst/doc/ggquickeda.html | 4 ggquickeda-0.1.1/ggquickeda/inst/shinyapp/global.R | 21 ggquickeda-0.1.1/ggquickeda/inst/shinyapp/rsconnect |only ggquickeda-0.1.1/ggquickeda/inst/shinyapp/server.R | 1088 +++++++--- ggquickeda-0.1.1/ggquickeda/inst/shinyapp/ui.R | 188 + ggquickeda-0.1.1/ggquickeda/man/geom_km.Rd | 41 ggquickeda-0.1.1/ggquickeda/man/geom_kmband.Rd | 36 ggquickeda-0.1.1/ggquickeda/man/geom_kmticks.Rd | 34 ggquickeda-0.1.1/ggquickeda/man/stat_km.Rd | 39 ggquickeda-0.1.1/ggquickeda/man/stat_kmband.Rd | 38 ggquickeda-0.1.1/ggquickeda/man/stat_kmticks.Rd | 37 34 files changed, 1150 insertions(+), 509 deletions(-)
Title: Archive and Unarchive Databases Using Flat Files
Description: Flat text files provide a robust, compressible, and portable
way to store tables from databases. This package provides convenient
functions for exporting tables from relational database connections
into compressed text files and streaming those text files back into
a database without requiring the whole table to fit in working memory.
Author: Carl Boettiger [aut, cre, cph]
(<https://orcid.org/0000-0002-1642-628X>),
Richard FitzJohn [ctb]
Maintainer: Carl Boettiger <cboettig@gmail.com>
Diff between arkdb versions 0.0.3 dated 2018-09-11 and 0.0.4 dated 2018-09-27
DESCRIPTION | 8 +-- MD5 | 17 ++++---- NEWS.md | 19 ++++++++- R/unark.R | 105 ++++++++++++++++++++++++++++++++++++++++------------ README.md | 36 +++++++++-------- inst/WORDLIST | 2 inst/doc/arkdb.html | 78 +++++++++++++++++++------------------- inst/examples |only man/ark.Rd | 7 +-- man/unark.Rd | 11 ++++- 10 files changed, 186 insertions(+), 97 deletions(-)