Title: Import Stata 'webuse' Datasets
Description: A Stata-style `webuse()` function for importing named datasets from Stata's online collection.
Author: Thomas J. Leeper [aut] (<https://orcid.org/0000-0003-4097-6326>),
Jodi Beggs [cre, aut]
Maintainer: Jodi Beggs <jodi@alum.mit.edu>
Diff between webuse versions 0.1.2 dated 2015-07-29 and 0.1.3 dated 2018-10-01
webuse-0.1.2/webuse/NEWS |only webuse-0.1.3/webuse/DESCRIPTION | 25 ++++++---- webuse-0.1.3/webuse/LICENSE | 4 - webuse-0.1.3/webuse/MD5 | 20 ++++---- webuse-0.1.3/webuse/NAMESPACE | 4 - webuse-0.1.3/webuse/NEWS.md |only webuse-0.1.3/webuse/R/webuse.R | 68 ++++++++++++++--------------- webuse-0.1.3/webuse/README.md | 61 +++++++++++++++----------- webuse-0.1.3/webuse/inst/CITATION | 30 ++++++------ webuse-0.1.3/webuse/man/webuse.Rd | 2 webuse-0.1.3/webuse/tests/testthat.R | 8 +-- webuse-0.1.3/webuse/tests/testthat/tests.R | 42 ++++++++--------- 12 files changed, 141 insertions(+), 123 deletions(-)
Title: Execute Native Scripts
Description: Run complex native scripts with a single command, similar to system commands.
Author: Sagie Gur-Ari [aut, cre]
Maintainer: Sagie Gur-Ari <sagiegurari@gmail.com>
Diff between scriptexec versions 0.2.1 dated 2017-11-25 and 0.2.2 dated 2018-10-01
DESCRIPTION | 10 MD5 | 26 +- NEWS.md | 7 R/scriptexec.R | 11 README.md | 22 + build/vignette.rds |binary inst/doc/scriptexec.R | 4 inst/doc/scriptexec.Rmd | 4 inst/doc/scriptexec.html | 489 +++++++++++++++++------------------------- man/execute.Rd | 4 tests/testthat/test_execute.R | 21 + tools/build.R | 255 ++++++++++++++++++--- tools/build.sh | 2 vignettes/scriptexec.Rmd | 4 14 files changed, 499 insertions(+), 360 deletions(-)
Title: A System of Plotting Optimized for Speed and Modularity
Description: A high-level plotting system, built using 'grid' graphics, that is
optimized for speed and modularity. This has great utility for quick
visualizations when testing code, with the key benefit that visualizations
are updated independently of one another.
Author: Eliot J B McIntire [aut, cre] (<https://orcid.org/0000-0002-6914-8316>),
Alex M Chubaty [aut] (<https://orcid.org/0000-0001-7146-8135>),
Her Majesty the Queen in Right of Canada, as represented by the
Minister of Natural Resources Canada [cph]
Maintainer: Eliot J B McIntire <eliot.mcintire@canada.ca>
Diff between quickPlot versions 0.1.4 dated 2018-06-26 and 0.1.5 dated 2018-10-01
quickPlot-0.1.4/quickPlot/vignettes/iii-plotting_files |only quickPlot-0.1.5/quickPlot/.aspell/defaults.R | 12 quickPlot-0.1.5/quickPlot/DESCRIPTION | 18 quickPlot-0.1.5/quickPlot/MD5 | 176 quickPlot-0.1.5/quickPlot/NAMESPACE | 293 quickPlot-0.1.5/quickPlot/NEWS.md | 79 quickPlot-0.1.5/quickPlot/R/environment.R | 186 quickPlot-0.1.5/quickPlot/R/plotting-classes.R | 654 - quickPlot-0.1.5/quickPlot/R/plotting-colours.R | 1202 +- quickPlot-0.1.5/quickPlot/R/plotting-helpers.R | 5560 +++++----- quickPlot-0.1.5/quickPlot/R/plotting-other.R | 1093 + quickPlot-0.1.5/quickPlot/R/plotting.R | 1594 +- quickPlot-0.1.5/quickPlot/R/quickPlot-classes.R | 54 quickPlot-0.1.5/quickPlot/R/quickPlot-package.R | 108 quickPlot-0.1.5/quickPlot/R/zzz.R | 28 quickPlot-0.1.5/quickPlot/README.md | 92 quickPlot-0.1.5/quickPlot/build/vignette.rds |binary quickPlot-0.1.5/quickPlot/inst/doc/iii-plotting.R | 382 quickPlot-0.1.5/quickPlot/inst/doc/iii-plotting.Rmd | 942 - quickPlot-0.1.5/quickPlot/inst/doc/iii-plotting.html | 879 - quickPlot-0.1.5/quickPlot/inst/examples/example_Plot.R | 202 quickPlot-0.1.5/quickPlot/inst/examples/example_makeLines.R | 52 quickPlot-0.1.5/quickPlot/inst/examples/example_setColors.R | 112 quickPlot-0.1.5/quickPlot/man/Plot-internal.Rd | 244 quickPlot-0.1.5/quickPlot/man/Plot.Rd | 734 - quickPlot-0.1.5/quickPlot/man/arrangeViewports.Rd | 58 quickPlot-0.1.5/quickPlot/man/arrangement-class.Rd | 146 quickPlot-0.1.5/quickPlot/man/assignQuickPlot.Rd | 72 quickPlot-0.1.5/quickPlot/man/clearPlot.Rd | 298 quickPlot-0.1.5/quickPlot/man/dev.Rd | 78 quickPlot-0.1.5/quickPlot/man/divergentColors.Rd | 106 quickPlot-0.1.5/quickPlot/man/equalExtent.Rd | 70 quickPlot-0.1.5/quickPlot/man/existsQuickPlot.Rd | 52 quickPlot-0.1.5/quickPlot/man/fortify.Rd | 28 quickPlot-0.1.5/quickPlot/man/getQuickPlot.Rd | 48 quickPlot-0.1.5/quickPlot/man/getSetColors.Rd | 272 quickPlot-0.1.5/quickPlot/man/grid-functions.Rd | 44 quickPlot-0.1.5/quickPlot/man/griddedClasses-class.Rd | 52 quickPlot-0.1.5/quickPlot/man/hasBbox.Rd | 40 quickPlot-0.1.5/quickPlot/man/identifyGrobToPlot.Rd | 72 quickPlot-0.1.5/quickPlot/man/isRstudioServer.Rd |only quickPlot-0.1.5/quickPlot/man/layerNames.Rd | 150 quickPlot-0.1.5/quickPlot/man/makeColorMatrix.Rd | 107 quickPlot-0.1.5/quickPlot/man/makeLayout.Rd | 65 quickPlot-0.1.5/quickPlot/man/makeLines.Rd | 114 quickPlot-0.1.5/quickPlot/man/makeList.Rd | 56 quickPlot-0.1.5/quickPlot/man/makeQuickPlot.Rd | 88 quickPlot-0.1.5/quickPlot/man/makeViewports.Rd | 54 quickPlot-0.1.5/quickPlot/man/newPlot.Rd | 96 quickPlot-0.1.5/quickPlot/man/numLayers.Rd | 110 quickPlot-0.1.5/quickPlot/man/objectNames.Rd | 62 quickPlot-0.1.5/quickPlot/man/parOrig.Rd | 18 quickPlot-0.1.5/quickPlot/man/parseArgs.Rd | 56 quickPlot-0.1.5/quickPlot/man/parseElems.Rd | 58 quickPlot-0.1.5/quickPlot/man/plotGrob.Rd | 220 quickPlot-0.1.5/quickPlot/man/prepareRaster.Rd | 68 quickPlot-0.1.5/quickPlot/man/quickPlot-class.Rd | 98 quickPlot-0.1.5/quickPlot/man/quickPlot-classes.Rd | 68 quickPlot-0.1.5/quickPlot/man/quickPlot-package.Rd | 80 quickPlot-0.1.5/quickPlot/man/quickPlotEnv.Rd | 28 quickPlot-0.1.5/quickPlot/man/quickPlotGrob-class.Rd | 100 quickPlot-0.1.5/quickPlot/man/quickPlotMouseClicks.Rd | 186 quickPlot-0.1.5/quickPlot/man/quickPlotObjects-class.Rd | 38 quickPlot-0.1.5/quickPlot/man/quickPlottables-class.Rd | 40 quickPlot-0.1.5/quickPlot/man/sample-maps.Rd | 54 quickPlot-0.1.5/quickPlot/man/sp2sl.Rd | 64 quickPlot-0.1.5/quickPlot/man/spatialObjects-class.Rd | 60 quickPlot-0.1.5/quickPlot/man/thin.Rd | 302 quickPlot-0.1.5/quickPlot/man/unittrim.Rd | 42 quickPlot-0.1.5/quickPlot/man/updateQuickPlot.Rd | 62 quickPlot-0.1.5/quickPlot/man/whereInStack.Rd | 166 quickPlot-0.1.5/quickPlot/tests/test-all.R | 4 quickPlot-0.1.5/quickPlot/tests/testthat/test-Plot-do-call.R | 80 quickPlot-0.1.5/quickPlot/tests/testthat/test-Plot-nonVisual.R | 158 quickPlot-0.1.5/quickPlot/tests/testthat/test-Plot.R | 2118 +-- quickPlot-0.1.5/quickPlot/tests/testthat/test-clickExtent.R | 58 quickPlot-0.1.5/quickPlot/tests/testthat/test-examples.R | 32 quickPlot-0.1.5/quickPlot/tests/testthat/test-spelling.R | 58 quickPlot-0.1.5/quickPlot/vignettes/iii-plotting.Rmd | 942 - 79 files changed, 11160 insertions(+), 11132 deletions(-)
Title: Joint Peak Detection in Several ChIP-Seq Samples
Description: Jointly segment several ChIP-seq samples to find the peaks
which are the same and different across samples. The fast approximate
maximum Poisson likelihood algorithm is described in
"PeakSegJoint: fast supervised peak detection via joint segmentation
of multiple count data samples"
<arXiv:1506.01286> by TD Hocking and G Bourque.
Author: Toby Dylan Hocking
Maintainer: Toby Dylan Hocking <toby.hocking@r-project.org>
Diff between PeakSegJoint versions 2017.08.11 dated 2017-08-15 and 2018.01.09 dated 2018-10-01
DESCRIPTION | 10 - MD5 | 33 ++- NAMESPACE | 1 NEWS | 24 ++ R/PeakSegJoint.R | 300 ++++++++++++++++++++++++++++++++- R/multiClusterPeaks.R | 15 + data/demo.profiles.RData |only man/PeakSegJointFaster.Rd |only man/PeakSegJointFasterOne.Rd |only man/PeakSegJointSeveral.Rd | 2 man/demo.profiles.Rd |only man/multiClusterPeaks.Rd | 15 + src/PeakSegJoint.c | 124 ------------- src/PeakSegJoint.h | 1 src/PeakSegJointFaster.c |only src/PeakSegJointFaster.h |only src/PeakSegJoint_interface.c | 92 ++++++++-- src/binSum.c | 114 ++++++++++++ src/binSum.h | 9 src/profile.h | 4 tests/testthat/test-functions-Faster.R |only 21 files changed, 584 insertions(+), 160 deletions(-)
Title: Simulate Pedigrees Ascertained for a Rare Disease
Description: Routines to simulate and manipulate pedigrees ascertained to
contain multiple family members affected by a rare disease.
Christina Nieuwoudt, Samantha J Jones, Angela Brooks-Wilson,
and Jinko Graham (2018) <doi:10.1101/234153>.
Author: Christina Nieuwoudt [aut, cre],
Jinko Graham [aut]
Maintainer: Christina Nieuwoudt <cnieuwou@sfu.ca>
Diff between SimRVPedigree versions 0.2.0 dated 2018-08-17 and 0.3.0 dated 2018-10-01
DESCRIPTION | 10 +-- MD5 | 54 +++++++++---------- R/LifeSim_Functions.R | 48 +++++++++-------- R/ManipulatePed_Functions.R | 4 - R/PedSim_Functions.R | 56 ++++++++++++-------- R/Ped_Methods.R | 32 ++++++++--- R/RVPedSim_Functions.R | 36 +++++++----- R/SimRVPedigree_doc.R | 2 R/Utility_Functions.R | 112 ++++++++++++++++++++-------------------- inst/doc/SimRVPedigree.R | 8 +- inst/doc/SimRVPedigree.Rmd | 34 ++++++------ inst/doc/SimRVPedigree.html | 48 ++++++++--------- man/SimRVPedigree.Rd | 2 man/censor_ped.Rd | 2 man/find_mrca.Rd | 18 +++--- man/get_nextEvent.Rd | 5 - man/plot.ped.Rd | 19 +++--- man/reassign_gen.Rd | 2 man/sim_RVped.Rd | 24 +++++--- man/sim_life.Rd | 23 +++----- man/sim_nFam.Rd | 6 -- man/sim_ped.Rd | 40 ++++++++------ man/summary.ped.Rd | 13 ++++ man/trim_ped.Rd | 2 tests/testthat/test_find_mcra.R | 41 ++++++++++++-- tests/testthat/test_sim_RVped.R | 20 +++---- tests/testthat/test_sim_life.R | 8 +- vignettes/SimRVPedigree.Rmd | 34 ++++++------ 28 files changed, 395 insertions(+), 308 deletions(-)
Title: Management of Survey Data and Presentation of Analysis Results
Description: An infrastructure for the management of survey data including
value labels, definable missing values, recoding of variables,
production of code books, and import of (subsets of) 'SPSS' and
'Stata' files is provided. Further, the package allows to produce
tables and data frames of arbitrary descriptive statistics and
(almost) publication-ready tables of regression model
estimates, which can be exported to 'LaTeX' and HTML.
Author: Martin Elff (with contributions from Christopher N. Lawrence, Dave Atkins, Jason W. Morgan, Achim Zeileis)
Maintainer: Martin Elff <memisc@elff.eu>
Diff between memisc versions 0.99.14.11 dated 2018-09-08 and 0.99.14.12 dated 2018-10-01
DESCRIPTION | 9 +-- MD5 | 14 ++--- R/spss-syntax-methods.R | 6 -- inst/ChangeLog | 6 ++ inst/NEWS.Rd | 6 ++ inst/doc/anes48.html | 2 src/memisc.h | 8 ++- src/readfixed.c | 117 +++++++++++++++++++++++++++--------------------- 8 files changed, 100 insertions(+), 68 deletions(-)
Title: Soybean Nested Association Mapping Dataset
Description: Genomic and multi-environmental soybean data. Soybean Nested
Association Mapping (SoyNAM) project dataset funded by the United Soybean Board
(USB). See <doi.org/10.1534/g3.118.200332> and <doi.org/10.1534/g3.117.300300>.
BLUP function formats data for genome-wide prediction and association analysis.
Author: Alencar Xavier, William Beavis, James Specht, Brian Diers, Rouf Mian, Reka Howard,
George Graef, Randall Nelson, William Schapaugh, Dechun Wang, Grover Shannon, Leah McHale,
Perry Cregan, Qijian Song, Miguel Lopez, William Muir, Katy Rainey.
Maintainer: Alencar Xavier <alenxav@gmail.com>
Diff between SoyNAM versions 1.4 dated 2018-02-02 and 1.5 dated 2018-10-01
DESCRIPTION | 19 ++++++++++--------- MD5 | 10 +++++----- data/soyin.RData |binary man/BLUP.Rd | 4 ++-- man/SoyNAM-package.Rd | 9 ++++++--- man/soynam.Rd | 7 ++++++- 6 files changed, 29 insertions(+), 20 deletions(-)
Title: Landscape Utility Toolbox
Description: Provides utility functions for some of the less-glamorous tasks involved
in landscape analysis. It includes functions to coerce raster data to the
common tibble format and vice versa, it helps with flexible reclassification
tasks of raster data and it provides a function to merge multiple raster.
Furthermore, 'landscapetools' helps landscape scientists to visualize their
data by providing optional themes and utility functions to plot single
landscapes, rasterstacks, -bricks and lists of raster.
Author: Marco Sciaini [aut, cre] (<https://orcid.org/0000-0002-3042-5435>),
Matthias Fritsch [aut],
Google [cph] (Roboto Condensed Font),
Laura Graham [rev] (Laura reviewed the package for rOpenSci, see
https://github.com/ropensci/onboarding/issues/188),
Jeffrey Hollister [rev] (Jeffrey reviewed the package for rOpenSci, see
https://github.com/ropensci/onboarding/issues/188)
Maintainer: Marco Sciaini <sciaini.marco@gmail.com>
Diff between landscapetools versions 0.3.0 dated 2018-03-28 and 0.4.0 dated 2018-10-01
landscapetools-0.3.0/landscapetools/man/figures/README-unnamed-chunk-5-1.png |only landscapetools-0.4.0/landscapetools/DESCRIPTION | 27 + landscapetools-0.4.0/landscapetools/MD5 | 43 +-- landscapetools-0.4.0/landscapetools/NEWS.md | 8 landscapetools-0.4.0/landscapetools/R/data.R | 6 landscapetools-0.4.0/landscapetools/R/landscapetools.R | 2 landscapetools-0.4.0/landscapetools/R/theme_nlm.R | 17 - landscapetools-0.4.0/landscapetools/R/util_calcboundaries.R | 4 landscapetools-0.4.0/landscapetools/R/util_classify.R | 40 ++ landscapetools-0.4.0/landscapetools/R/util_facetplot.R | 29 +- landscapetools-0.4.0/landscapetools/man/fbmmap.Rd | 2 landscapetools-0.4.0/landscapetools/man/figures/README-unnamed-chunk-1-1.png |binary landscapetools-0.4.0/landscapetools/man/figures/README-unnamed-chunk-2-1.png |binary landscapetools-0.4.0/landscapetools/man/figures/README-unnamed-chunk-3-1.png |binary landscapetools-0.4.0/landscapetools/man/figures/README-unnamed-chunk-4-1.png |binary landscapetools-0.4.0/landscapetools/man/grdmap.Rd | 2 landscapetools-0.4.0/landscapetools/man/landscapetools-package.Rd | 8 landscapetools-0.4.0/landscapetools/man/rndmap.Rd | 2 landscapetools-0.4.0/landscapetools/man/theme_nlm.Rd | 140 +++++----- landscapetools-0.4.0/landscapetools/man/util_classify.Rd | 30 ++ landscapetools-0.4.0/landscapetools/man/util_facetplot.Rd | 13 landscapetools-0.4.0/landscapetools/man/util_merge.Rd | 3 landscapetools-0.4.0/landscapetools/man/util_plot.Rd | 8 23 files changed, 233 insertions(+), 151 deletions(-)
More information about landscapetools at CRAN
Permanent link
Title: A Method to Download Department of Education College Scorecard
Data
Description: A method to download Department of Education College
Scorecard data using the public API
<https://collegescorecard.ed.gov/data/documentation/>. It is based on
the 'dplyr' model of piped commands to select and filter data in a
single chained function call. An API key from the U.S. Department of
Education is required.
Author: Benjamin Skinner [aut, cre] (<https://orcid.org/0000-0002-0337-7415>)
Maintainer: Benjamin Skinner <btskinner@virginia.edu>
Diff between rscorecard versions 0.9.0 dated 2018-09-10 and 0.10.0 dated 2018-10-01
DESCRIPTION | 6 +++--- MD5 | 8 +++++--- NEWS.md | 3 +++ R/sysdata.rda |binary inst |only 5 files changed, 11 insertions(+), 6 deletions(-)
Title: 'STK++' Core Library Integration to 'R' using 'Rcpp'
Description: 'STK++' <http://www.stkpp.org> is a collection of C++ classes
for statistics, clustering, linear algebra, arrays (with an 'Eigen'-like API),
regression, dimension reduction, etc. The integration of the library to 'R' is
using 'Rcpp'. The 'rtkore' package includes the header files from the 'STK++'
core library. All files contain only template classes and/or inline functions.
'STK++' is licensed under the GNU LGPL version 2 or later. 'rtkore' (the 'stkpp'
integration into 'R') is licensed under the GNU GPL version 2 or later. See file
LICENSE.note for details.
Author: Serge Iovleff [aut, cre],
Parmeet Bhatia [ctb]
Maintainer: Serge Iovleff <serge.iovleff@stkpp.org>
Diff between rtkore versions 1.5.1 dated 2018-03-05 and 1.5.5 dated 2018-10-01
rtkore-1.5.1/rtkore/inst/projects/Algebra/include/STK_InvertFixedSizeMatrix.h |only rtkore-1.5.1/rtkore/inst/projects/Algebra/include/STK_InvertSymMatrix.h |only rtkore-1.5.1/rtkore/inst/projects/Algebra/include/invert/STK_GenInvert.h |only rtkore-1.5.1/rtkore/inst/projects/Algebra/include/invert/STK_SymInvert.h |only rtkore-1.5.1/rtkore/inst/projects/Arrays/include/allocators/STK_AllocatorBase.h |only rtkore-1.5.1/rtkore/man/rtkore-package.Rd |only rtkore-1.5.5/rtkore/DESCRIPTION | 13 rtkore-1.5.5/rtkore/MD5 | 337 +- rtkore-1.5.5/rtkore/NAMESPACE | 1 rtkore-1.5.5/rtkore/R/inlineCxxPlugin.R | 13 rtkore-1.5.5/rtkore/R/rtkore.R | 66 rtkore-1.5.5/rtkore/R/rtkoreFlags.R | 6 rtkore-1.5.5/rtkore/build/vignette.rds |binary rtkore-1.5.5/rtkore/inst/doc/rtkpp-Arrays.pdf |binary rtkore-1.5.5/rtkore/inst/doc/rtkpp-ArraysQuickRef.Rnw | 440 ++- rtkore-1.5.5/rtkore/inst/doc/rtkpp-ArraysQuickRef.pdf |binary rtkore-1.5.5/rtkore/inst/doc/rtkpp-Introduction.Rnw | 44 rtkore-1.5.5/rtkore/inst/doc/rtkpp-Introduction.pdf |binary rtkore-1.5.5/rtkore/inst/doc/rtkpp-Tips.pdf |binary rtkore-1.5.5/rtkore/inst/doc/rtkpp-Utilities.Rnw | 471 ++- rtkore-1.5.5/rtkore/inst/doc/rtkpp-Utilities.pdf |binary rtkore-1.5.5/rtkore/inst/include/Algebra.h | 23 rtkore-1.5.5/rtkore/inst/include/RTKpp.h | 4 rtkore-1.5.5/rtkore/inst/include/RTKppForward.h | 2 rtkore-1.5.5/rtkore/inst/include/Regress.h | 22 rtkore-1.5.5/rtkore/inst/include/STKpp.h | 2 rtkore-1.5.5/rtkore/inst/include/STatistiK.h | 3 rtkore-1.5.5/rtkore/inst/projects/Algebra/include/STK_GramSchmidt.h | 4 rtkore-1.5.5/rtkore/inst/projects/Algebra/include/STK_Householder.h | 86 rtkore-1.5.5/rtkore/inst/projects/Algebra/include/STK_ILeastSquare.h | 7 rtkore-1.5.5/rtkore/inst/projects/Algebra/include/STK_IQr.h | 78 rtkore-1.5.5/rtkore/inst/projects/Algebra/include/STK_ISvd.h | 176 - rtkore-1.5.5/rtkore/inst/projects/Algebra/include/STK_ISymEigen.h | 142 - rtkore-1.5.5/rtkore/inst/projects/Algebra/include/STK_InvertMatrix.h |only rtkore-1.5.5/rtkore/inst/projects/Algebra/include/STK_MultiLeastSquare.h | 32 rtkore-1.5.5/rtkore/inst/projects/Algebra/include/STK_Qr.h | 38 rtkore-1.5.5/rtkore/inst/projects/Algebra/include/STK_Svd.h | 29 rtkore-1.5.5/rtkore/inst/projects/Algebra/include/STK_SymEigen.h | 24 rtkore-1.5.5/rtkore/inst/projects/Algebra/include/STK_lapack_MultiLeastSquare.h | 17 rtkore-1.5.5/rtkore/inst/projects/Algebra/include/STK_lapack_Qr.h | 15 rtkore-1.5.5/rtkore/inst/projects/Algebra/include/STK_lapack_Svd.h | 90 rtkore-1.5.5/rtkore/inst/projects/Algebra/include/STK_lapack_SymEigen.h | 25 rtkore-1.5.5/rtkore/inst/projects/Algebra/include/STK_lapack_Util.h | 32 rtkore-1.5.5/rtkore/inst/projects/Algebra/include/STK_transpose.h |only rtkore-1.5.5/rtkore/inst/projects/Algebra/include/invert/STK_Invert.h |only rtkore-1.5.5/rtkore/inst/projects/Algebra/include/invert/STK_InvertLowerSym.h |only rtkore-1.5.5/rtkore/inst/projects/Algebra/include/invert/STK_InvertLowerTriangular.h |only rtkore-1.5.5/rtkore/inst/projects/Algebra/include/invert/STK_InvertSym.h |only rtkore-1.5.5/rtkore/inst/projects/Algebra/include/invert/STK_InvertUpperSym.h |only rtkore-1.5.5/rtkore/inst/projects/Algebra/include/invert/STK_InvertUpperTriangular.h |only rtkore-1.5.5/rtkore/inst/projects/Arrays/include/STK_Array1D.h | 61 rtkore-1.5.5/rtkore/inst/projects/Arrays/include/STK_Array2DDiagonal.h | 1 rtkore-1.5.5/rtkore/inst/projects/Arrays/include/STK_Array2DNumber.h | 30 rtkore-1.5.5/rtkore/inst/projects/Arrays/include/STK_Array2DPoint.h | 35 rtkore-1.5.5/rtkore/inst/projects/Arrays/include/STK_Array2DSquare.h | 30 rtkore-1.5.5/rtkore/inst/projects/Arrays/include/STK_Array2DVector.h | 19 rtkore-1.5.5/rtkore/inst/projects/Arrays/include/STK_Array2D_Functors.h | 8 rtkore-1.5.5/rtkore/inst/projects/Arrays/include/STK_ArrayBase.h | 3 rtkore-1.5.5/rtkore/inst/projects/Arrays/include/STK_ArraysTraits.h | 4 rtkore-1.5.5/rtkore/inst/projects/Arrays/include/STK_Arrays_Util.h | 5 rtkore-1.5.5/rtkore/inst/projects/Arrays/include/STK_CArray.h | 47 rtkore-1.5.5/rtkore/inst/projects/Arrays/include/STK_CArrayNumber.h | 28 rtkore-1.5.5/rtkore/inst/projects/Arrays/include/STK_CArrayPoint.h | 30 rtkore-1.5.5/rtkore/inst/projects/Arrays/include/STK_CArraySquare.h | 27 rtkore-1.5.5/rtkore/inst/projects/Arrays/include/STK_CArrayVector.h | 25 rtkore-1.5.5/rtkore/inst/projects/Arrays/include/STK_Const_Arrays.h | 71 rtkore-1.5.5/rtkore/inst/projects/Arrays/include/STK_ExprBase.h | 46 rtkore-1.5.5/rtkore/inst/projects/Arrays/include/STK_ExprBaseProduct.h | 103 rtkore-1.5.5/rtkore/inst/projects/Arrays/include/STK_ExprBaseVisitor.h | 7 rtkore-1.5.5/rtkore/inst/projects/Arrays/include/STK_IArray1D.h | 345 +- rtkore-1.5.5/rtkore/inst/projects/Arrays/include/STK_IArray2D.h | 12 rtkore-1.5.5/rtkore/inst/projects/Arrays/include/STK_IArray2DBase.h | 183 + rtkore-1.5.5/rtkore/inst/projects/Arrays/include/STK_IArrayBase.h | 128 - rtkore-1.5.5/rtkore/inst/projects/Arrays/include/STK_ICArray.h | 308 +- rtkore-1.5.5/rtkore/inst/projects/Arrays/include/STK_IContainerRef.h | 2 rtkore-1.5.5/rtkore/inst/projects/Arrays/include/STK_ISparseArray.h | 8 rtkore-1.5.5/rtkore/inst/projects/Arrays/include/STK_ITContainer.h | 34 rtkore-1.5.5/rtkore/inst/projects/Arrays/include/STK_ITContainer1D.h | 47 rtkore-1.5.5/rtkore/inst/projects/Arrays/include/STK_ITContainer2D.h | 97 rtkore-1.5.5/rtkore/inst/projects/Arrays/include/STK_SparseArray.h | 6 rtkore-1.5.5/rtkore/inst/projects/Arrays/include/allocators/STK_CAllocator.h | 448 ++- rtkore-1.5.5/rtkore/inst/projects/Arrays/include/allocators/STK_MemAllocator.h |only rtkore-1.5.5/rtkore/inst/projects/Arrays/include/allocators/STK_MemSAllocator.h |only rtkore-1.5.5/rtkore/inst/projects/Arrays/include/allocators/STK_SAllocator.h | 178 - rtkore-1.5.5/rtkore/inst/projects/Arrays/include/assign/STK_AssignSelector.h | 74 rtkore-1.5.5/rtkore/inst/projects/Arrays/include/operators/STK_BinaryImpl.h |only rtkore-1.5.5/rtkore/inst/projects/Arrays/include/operators/STK_BinaryOperators.h | 1276 ---------- rtkore-1.5.5/rtkore/inst/projects/Arrays/include/operators/STK_ReshapeOperators.h | 104 rtkore-1.5.5/rtkore/inst/projects/Arrays/include/operators/STK_SlicingOperators.h | 6 rtkore-1.5.5/rtkore/inst/projects/Arrays/include/operators/STK_TransposeOperator.h | 6 rtkore-1.5.5/rtkore/inst/projects/Arrays/include/operators/STK_UnaryOperators.h | 2 rtkore-1.5.5/rtkore/inst/projects/Arrays/include/products/STK_ArrayByArrayProduct.h | 597 ++-- rtkore-1.5.5/rtkore/inst/projects/Arrays/include/products/STK_ArrayByVectorProduct.h | 4 rtkore-1.5.5/rtkore/inst/projects/Arrays/include/products/STK_ProductDispatcher.h | 379 ++ rtkore-1.5.5/rtkore/inst/projects/Arrays/include/products/STK_ProductOperators.h | 439 +-- rtkore-1.5.5/rtkore/inst/projects/Arrays/include/products/STK_ProductRaw.h | 509 ++- rtkore-1.5.5/rtkore/inst/projects/Arrays/include/visitors/STK_VisitorSelector.h | 4 rtkore-1.5.5/rtkore/inst/projects/Arrays/include/visitors/STK_VisitorsImpl.h | 8 rtkore-1.5.5/rtkore/inst/projects/DManager/include/STK_DataBridge.h | 205 - rtkore-1.5.5/rtkore/inst/projects/DManager/include/STK_DataHandler.h | 26 rtkore-1.5.5/rtkore/inst/projects/DManager/include/STK_IDataBridge.h | 21 rtkore-1.5.5/rtkore/inst/projects/DManager/include/STK_IPage.h | 2 rtkore-1.5.5/rtkore/inst/projects/DManager/include/STK_List1D.h | 1 rtkore-1.5.5/rtkore/inst/projects/DManager/include/STK_Variable.h | 11 rtkore-1.5.5/rtkore/inst/projects/Regress/include/STK_AdditiveBSplineRegression.h | 2 rtkore-1.5.5/rtkore/inst/projects/Regress/include/STK_BSplineRegression.h | 18 rtkore-1.5.5/rtkore/inst/projects/Regress/include/STK_Basis_Util.h |only rtkore-1.5.5/rtkore/inst/projects/Regress/include/STK_IBasis.h | 9 rtkore-1.5.5/rtkore/inst/projects/Regress/include/STK_MultidimRegression.h | 12 rtkore-1.5.5/rtkore/inst/projects/Regress/include/STK_Regress_Util.h | 18 rtkore-1.5.5/rtkore/inst/projects/Rtkpp/include/Rcpp_as.h | 2 rtkore-1.5.5/rtkore/inst/projects/Rtkpp/include/Rcpp_wrap.h | 2 rtkore-1.5.5/rtkore/inst/projects/Rtkpp/include/STK_RMatrix.h | 125 rtkore-1.5.5/rtkore/inst/projects/Rtkpp/include/STK_RVector.h | 39 rtkore-1.5.5/rtkore/inst/projects/Rtkpp/include/STK_RcppTraits.h | 2 rtkore-1.5.5/rtkore/inst/projects/Rtkpp/include/STK_wrap.h | 2 rtkore-1.5.5/rtkore/inst/projects/STKernel/include/STK_Constants.h | 41 rtkore-1.5.5/rtkore/inst/projects/STKernel/include/STK_Range.h | 54 rtkore-1.5.5/rtkore/inst/projects/STatistiK/include/STK_Kernel_IKernel.h | 40 rtkore-1.5.5/rtkore/inst/projects/STatistiK/include/STK_Law_Bernoulli.h | 13 rtkore-1.5.5/rtkore/inst/projects/STatistiK/include/STK_Law_Beta.h | 26 rtkore-1.5.5/rtkore/inst/projects/STatistiK/include/STK_Law_Binomial.h | 33 rtkore-1.5.5/rtkore/inst/projects/STatistiK/include/STK_Law_Categorical.h | 3 rtkore-1.5.5/rtkore/inst/projects/STatistiK/include/STK_Law_Cauchy.h | 16 rtkore-1.5.5/rtkore/inst/projects/STatistiK/include/STK_Law_ChiSquared.h | 14 rtkore-1.5.5/rtkore/inst/projects/STatistiK/include/STK_Law_Exponential.h | 12 rtkore-1.5.5/rtkore/inst/projects/STatistiK/include/STK_Law_FisherSnedecor.h | 26 rtkore-1.5.5/rtkore/inst/projects/STatistiK/include/STK_Law_Functors.h |only rtkore-1.5.5/rtkore/inst/projects/STatistiK/include/STK_Law_Gamma.h | 26 rtkore-1.5.5/rtkore/inst/projects/STatistiK/include/STK_Law_Geometric.h | 24 rtkore-1.5.5/rtkore/inst/projects/STatistiK/include/STK_Law_HyperGeometric.h | 15 rtkore-1.5.5/rtkore/inst/projects/STatistiK/include/STK_Law_IUnivLaw.h | 29 rtkore-1.5.5/rtkore/inst/projects/STatistiK/include/STK_Law_LogNormal.h | 26 rtkore-1.5.5/rtkore/inst/projects/STatistiK/include/STK_Law_Logistic.h | 32 rtkore-1.5.5/rtkore/inst/projects/STatistiK/include/STK_Law_NegativeBinomial.h | 24 rtkore-1.5.5/rtkore/inst/projects/STatistiK/include/STK_Law_Normal.h | 18 rtkore-1.5.5/rtkore/inst/projects/STatistiK/include/STK_Law_Poisson.h | 12 rtkore-1.5.5/rtkore/inst/projects/STatistiK/include/STK_Law_Student.h | 14 rtkore-1.5.5/rtkore/inst/projects/STatistiK/include/STK_Law_Uniform.h | 14 rtkore-1.5.5/rtkore/inst/projects/STatistiK/include/STK_Law_Weibull.h | 24 rtkore-1.5.5/rtkore/inst/projects/STatistiK/include/STK_Stat_MultivariateReal.h | 18 rtkore-1.5.5/rtkore/inst/projects/Sdk/include/STK_MacrosVersion.h | 2 rtkore-1.5.5/rtkore/inst/projects/Sdk/include/STK_MetaTemplate.h | 43 rtkore-1.5.5/rtkore/inst/projects/StatModels/include/STK_IMultiStatModel.h | 16 rtkore-1.5.5/rtkore/inst/projects/StatModels/include/STK_IStatModel.h | 4 rtkore-1.5.5/rtkore/inst/projects/StatModels/include/STK_IUnivStatModel.h | 6 rtkore-1.5.5/rtkore/inst/projects/StatModels/include/STK_ModelBernoulli_pj.h | 27 rtkore-1.5.5/rtkore/inst/projects/StatModels/include/STK_ModelDiagGaussian_muj_sj.h | 24 rtkore-1.5.5/rtkore/inst/projects/StatModels/include/STK_ModelGamma_aj_bj.h | 27 rtkore-1.5.5/rtkore/inst/projects/StatModels/include/STK_Model_Util.h | 4 rtkore-1.5.5/rtkore/inst/projects/StatModels/include/STK_PenCriterion.h | 16 rtkore-1.5.5/rtkore/man/rtkoreFlags.Rd | 8 rtkore-1.5.5/rtkore/vignettes/programs/tutoAddingCols.out | 16 rtkore-1.5.5/rtkore/vignettes/programs/tutoAddingRows.out | 18 rtkore-1.5.5/rtkore/vignettes/programs/tutoAppliers.out | 12 rtkore-1.5.5/rtkore/vignettes/programs/tutoCenteringAnArray.out | 16 rtkore-1.5.5/rtkore/vignettes/programs/tutoInvert.cpp |only rtkore-1.5.5/rtkore/vignettes/programs/tutoInvert.out |only rtkore-1.5.5/rtkore/vignettes/programs/tutoInvertTriangular.cpp |only rtkore-1.5.5/rtkore/vignettes/programs/tutoInvertTriangular.out |only rtkore-1.5.5/rtkore/vignettes/programs/tutoLeastSquare.cpp |only rtkore-1.5.5/rtkore/vignettes/programs/tutoLeastSquare.out |only rtkore-1.5.5/rtkore/vignettes/programs/tutoProbability.cpp | 26 rtkore-1.5.5/rtkore/vignettes/programs/tutoProbability.out | 37 rtkore-1.5.5/rtkore/vignettes/programs/tutoQr.cpp |only rtkore-1.5.5/rtkore/vignettes/programs/tutoQr.out |only rtkore-1.5.5/rtkore/vignettes/programs/tutoQrUpdate.cpp |only rtkore-1.5.5/rtkore/vignettes/programs/tutoQrUpdate.out |only rtkore-1.5.5/rtkore/vignettes/programs/tutoRemoveRowsAndCols.out | 16 rtkore-1.5.5/rtkore/vignettes/programs/tutoStatCovariance.out | 6 rtkore-1.5.5/rtkore/vignettes/programs/tutoStatFactors.cpp | 34 rtkore-1.5.5/rtkore/vignettes/programs/tutoStatFactors.out | 32 rtkore-1.5.5/rtkore/vignettes/programs/tutoStatFunctors.cpp | 13 rtkore-1.5.5/rtkore/vignettes/programs/tutoStatFunctors.out | 26 rtkore-1.5.5/rtkore/vignettes/programs/tutoStatTransform.cpp | 19 rtkore-1.5.5/rtkore/vignettes/programs/tutoStatTransform.out | 26 rtkore-1.5.5/rtkore/vignettes/programs/tutoSubArrays.cpp | 4 rtkore-1.5.5/rtkore/vignettes/programs/tutoSubArrays.out | 6 rtkore-1.5.5/rtkore/vignettes/programs/tutoSvd.cpp |only rtkore-1.5.5/rtkore/vignettes/programs/tutoSvd.out |only rtkore-1.5.5/rtkore/vignettes/programs/tutoSymEigen.cpp |only rtkore-1.5.5/rtkore/vignettes/programs/tutoSymEigen.out |only rtkore-1.5.5/rtkore/vignettes/rtkpp-ArraysQuickRef.Rnw | 440 ++- rtkore-1.5.5/rtkore/vignettes/rtkpp-Introduction.Rnw | 44 rtkore-1.5.5/rtkore/vignettes/rtkpp-Utilities.Rnw | 471 ++- rtkore-1.5.5/rtkore/vignettes/rtkpp-preamble.tex | 35 186 files changed, 5506 insertions(+), 5045 deletions(-)
Title: Co-Ranking Matrix
Description: Calculates the co-ranking matrix to assess the
quality of a dimensionality reduction.
Author: Guido Kraemer
Maintainer: Guido Kraemer <gkraemer@bgc-jena.mpg.de>
Diff between coRanking versions 0.1.3 dated 2016-09-16 and 0.1.4 dated 2018-10-01
DESCRIPTION | 17 +++---- LICENSE |only MD5 | 54 +++++++++++----------- NAMESPACE | 4 + R/coranking-package.R | 4 + R/coranking.R | 85 +++++++++++++++++------------------ R/coranking_internals.R | 25 +++++----- R/criteria.R | 34 ++++++-------- R/image.R | 54 ++++++++-------------- R/lcmc.R | 26 ++++------ R/rankmatrix.R | 66 +++++++++++++-------------- R/submatrix.R | 23 ++++----- README.md | 29 ++++++++++-- build/vignette.rds |binary inst/CITATION |only inst/doc/coranking.R | 42 +++++++++-------- inst/doc/coranking.Rmd | 50 ++++++++++---------- inst/doc/coranking.html | 66 ++++++++++++++------------- man/LCMC.Rd | 1 man/coRanking-package.Rd | 11 ++++ man/coranking.Rd | 7 +- man/imageplot.Rd | 1 man/rankmatrix.Rd | 1 src/coranking.cpp | 93 ++++++++++++++++++++------------------- src/coranking_main.cpp | 60 ++++++++++++++++++------- tests/testthat/test_coranking.R | 90 ++++++++++++++++++------------------- tests/testthat/test_euclidean.R | 58 ++++++++++++------------ tests/testthat/test_rankmatrix.R | 75 +++++++++++++++---------------- vignettes/coranking.Rmd | 50 ++++++++++---------- 29 files changed, 538 insertions(+), 488 deletions(-)
Title: Calibration and Analysis of Radiocarbon Dates
Description: Enables the calibration and analysis of radiocarbon dates, often but not exclusively for the purposes of archaeological research. It includes functions not only for basic calibration, uncalibration, and plotting of one or more dates, but also a statistical framework for building demographic and related longitudinal inferences from aggregate radiocarbon date lists, including: Monte-Carlo simulation test (Timpson et al 2014 <doi:10.1016/j.jas.2014.08.011>), random mark permutation test (Crema et al 2016 <doi:10.1371/journal.pone.0154809>) and spatial permutation tests (Crema, Bevan, and Shennan 2017 <doi:10.1016/j.jas.2017.09.007>).
Author: Andrew Bevan [aut],
Enrico Crema [aut, cre],
Fabio Silva [ctb]
Maintainer: Enrico Crema <enrico.crema@gmail.com>
Diff between rcarbon versions 1.1.3 dated 2018-06-26 and 1.2.0 dated 2018-10-01
rcarbon-1.1.3/rcarbon/R/bootstrapCI.R |only rcarbon-1.2.0/rcarbon/DESCRIPTION | 8 - rcarbon-1.2.0/rcarbon/MD5 | 50 ++++---- rcarbon-1.2.0/rcarbon/NAMESPACE | 2 rcarbon-1.2.0/rcarbon/NEWS.md | 12 ++ rcarbon-1.2.0/rcarbon/R/aggregation.R | 10 + rcarbon-1.2.0/rcarbon/R/calibration.R | 89 ++++++++++++++- rcarbon-1.2.0/rcarbon/R/plots.R | 104 +++++++++++------- rcarbon-1.2.0/rcarbon/R/tests.R | 142 +++++++++++++++++-------- rcarbon-1.2.0/rcarbon/R/utilities.R | 13 ++ rcarbon-1.2.0/rcarbon/README.md | 16 ++ rcarbon-1.2.0/rcarbon/inst/CITATION | 2 rcarbon-1.2.0/rcarbon/inst/doc/rcarbon.Rmd | 29 ++++- rcarbon-1.2.0/rcarbon/inst/doc/rcarbon.html | 57 ++++++---- rcarbon-1.2.0/rcarbon/man/binPrep.Rd | 7 - rcarbon-1.2.0/rcarbon/man/binsense.Rd | 13 -- rcarbon-1.2.0/rcarbon/man/mixCurves.Rd |only rcarbon-1.2.0/rcarbon/man/modelTest.Rd | 13 -- rcarbon-1.2.0/rcarbon/man/plot.CalDates.Rd | 4 rcarbon-1.2.0/rcarbon/man/plot.CalGrid.Rd | 9 - rcarbon-1.2.0/rcarbon/man/plot.CalSPD.Rd | 11 + rcarbon-1.2.0/rcarbon/man/plot.SpdModelTest.Rd | 2 rcarbon-1.2.0/rcarbon/man/plot.SpdPermTest.Rd | 10 - rcarbon-1.2.0/rcarbon/man/plot.spatialTest.Rd | 5 rcarbon-1.2.0/rcarbon/man/plot.spdGG.Rd | 4 rcarbon-1.2.0/rcarbon/man/uncalibrate.Rd | 2 rcarbon-1.2.0/rcarbon/vignettes/rcarbon.Rmd | 29 ++++- 27 files changed, 459 insertions(+), 184 deletions(-)
Title: Connecting to Various Database Platforms
Description: An R 'DataBase Interface' ('DBI') compatible interface to various database platforms ('PostgreSQL', 'Oracle', 'Microsoft SQL Server',
'Amazon Redshift', 'Microsoft Parallel Database Warehouse', 'IBM Netezza', 'Apache Impala', and 'Google BigQuery'). Also includes support for
fetching data as 'ffdf' objects. Uses 'Java Database Connectivity' ('JDBC') to connect to databases.
Author: Martijn Schuemie [aut, cre],
Marc Suchard [aut],
Observational Health Data Science and Informatics [cph],
Microsoft Inc. [cph] (SQL Server JDBC driver),
PostgreSQL Global Development Group [cph] (PostgreSQL JDBC driver),
Starschema Ltd. [cph] (BigQuery JDBC driver),
Oracle Inc. [cph] (Oracle JDBC driver),
Amazon Inc. [cph] (RedShift JDBC driver)
Maintainer: Martijn Schuemie <schuemie@ohdsi.org>
Diff between DatabaseConnector versions 2.1.4 dated 2018-08-21 and 2.2.0 dated 2018-10-01
DESCRIPTION | 8 MD5 | 20 NAMESPACE | 1 NEWS | 9 R/Compression.R |only R/InsertTable.R | 7 build/DatabaseConnector.pdf |12129 ++++++++-------- inst/doc/UsingDatabaseConnector.pdf |binary inst/java/DatabaseConnector.jar |binary java/org/ohdsi/databaseConnector/Compression.java |only java/org/ohdsi/databaseConnector/DebugBatchedQuery.java | 47 man/createZipFile.Rd |only tests/testthat/test-compression.R |only 13 files changed, 6240 insertions(+), 5981 deletions(-)
More information about DatabaseConnector at CRAN
Permanent link
Title: Utility Functions for 'spatstat'
Description: Contains utility functions for the 'spatstat' package
which may also be useful for other purposes.
Author: Adrian Baddeley [aut, cre],
Rolf Turner [aut],
Ege Rubak [aut]
Maintainer: Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>
Diff between spatstat.utils versions 1.9-0 dated 2018-07-28 and 1.10-0 dated 2018-10-01
DESCRIPTION | 8 ++--- MD5 | 17 ++++++----- NAMESPACE | 3 +- NEWS |only R/primefactors.R | 13 ++++---- R/utilseq.R | 13 ++++++-- inst/doc/packagesizes.txt | 9 +++++- man/methods.xypolygon.Rd | 14 +++++++++ man/spatstat.utils-internal.Rd | 4 ++ tests/numerical.R | 60 +++++++++++++++++++++++++++++++++++++++++ 10 files changed, 115 insertions(+), 26 deletions(-)
More information about spatstat.utils at CRAN
Permanent link
Title: Seamless R and C++ Integration
Description: The 'Rcpp' package provides R functions as well as C++ classes which
offer a seamless integration of R and C++. Many R data types and objects can be
mapped back and forth to C++ equivalents which facilitates both writing of new
code as well as easier integration of third-party libraries. Documentation
about 'Rcpp' is provided by several vignettes included in this package, via the
'Rcpp Gallery' site at <http://gallery.rcpp.org>, the paper by Eddelbuettel and
Francois (2011, <doi:10.18637/jss.v040.i08>), the book by Eddelbuettel (2013,
<doi:10.1007/978-1-4614-6868-4>) and the paper by Eddelbuettel and Balamuta (2018,
<doi:10.1080/00031305.2017.1375990>); see 'citation("Rcpp")' for details.
Author: Dirk Eddelbuettel, Romain Francois, JJ Allaire, Kevin Ushey, Qiang Kou,
Nathan Russell, Douglas Bates and John Chambers
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between Rcpp versions 0.12.18 dated 2018-07-23 and 0.12.19 dated 2018-10-01
Rcpp-0.12.18/Rcpp/build/Rcpp.pdf |only Rcpp-0.12.19/Rcpp/ChangeLog | 111 +++- Rcpp-0.12.19/Rcpp/DESCRIPTION | 8 Rcpp-0.12.19/Rcpp/MD5 | 97 +-- Rcpp-0.12.19/Rcpp/NAMESPACE | 8 Rcpp-0.12.19/Rcpp/R/RcppClass.R | 8 Rcpp-0.12.19/Rcpp/R/RcppLdpath.R | 24 Rcpp-0.12.19/Rcpp/R/exposeClass.R | 17 Rcpp-0.12.19/Rcpp/README.md | 87 +-- Rcpp-0.12.19/Rcpp/inst/NEWS.Rd | 48 + Rcpp-0.12.19/Rcpp/inst/bib/Rcpp.bib | 14 Rcpp-0.12.19/Rcpp/inst/doc/Rcpp-FAQ.R | 270 ++++------ Rcpp-0.12.19/Rcpp/inst/doc/Rcpp-FAQ.Rmd | 120 ++-- Rcpp-0.12.19/Rcpp/inst/doc/Rcpp-FAQ.pdf |binary Rcpp-0.12.19/Rcpp/inst/doc/Rcpp-attributes.Rmd | 24 Rcpp-0.12.19/Rcpp/inst/doc/Rcpp-attributes.pdf |binary Rcpp-0.12.19/Rcpp/inst/doc/Rcpp-extending.R | 2 Rcpp-0.12.19/Rcpp/inst/doc/Rcpp-extending.Rmd | 30 - Rcpp-0.12.19/Rcpp/inst/doc/Rcpp-extending.pdf |binary Rcpp-0.12.19/Rcpp/inst/doc/Rcpp-introduction.R | 54 +- Rcpp-0.12.19/Rcpp/inst/doc/Rcpp-introduction.Rmd | 19 Rcpp-0.12.19/Rcpp/inst/doc/Rcpp-introduction.pdf |binary Rcpp-0.12.19/Rcpp/inst/doc/Rcpp-jss-2011.pdf |binary Rcpp-0.12.19/Rcpp/inst/doc/Rcpp-modules.pdf |binary Rcpp-0.12.19/Rcpp/inst/doc/Rcpp-package.pdf |binary Rcpp-0.12.19/Rcpp/inst/doc/Rcpp-quickref.pdf |binary Rcpp-0.12.19/Rcpp/inst/doc/Rcpp-sugar.Rmd | 4 Rcpp-0.12.19/Rcpp/inst/doc/Rcpp-sugar.pdf |binary Rcpp-0.12.19/Rcpp/inst/doc/Rcpp-unitTests.pdf |binary Rcpp-0.12.19/Rcpp/inst/doc/Rcpp.bib | 14 Rcpp-0.12.19/Rcpp/inst/include/Rcpp/api/meat/Rcpp_eval.h | 2 Rcpp-0.12.19/Rcpp/inst/include/Rcpp/config.h | 7 Rcpp-0.12.19/Rcpp/inst/include/Rcpp/exceptions.h | 2 Rcpp-0.12.19/Rcpp/inst/include/Rcpp/protection/Shelter.h | 4 Rcpp-0.12.19/Rcpp/inst/include/Rcpp/protection/Shield.h | 8 Rcpp-0.12.19/Rcpp/inst/include/Rcpp/r/headers.h | 11 Rcpp-0.12.19/Rcpp/inst/include/Rcpp/vector/no_init.h | 12 Rcpp-0.12.19/Rcpp/inst/unitTests/runit.exposeClass.R |only Rcpp-0.12.19/Rcpp/inst/unitTests/testRcppClass/src/stdVector.cpp | 2 Rcpp-0.12.19/Rcpp/man/Rcpp-deprecated.Rd | 11 Rcpp-0.12.19/Rcpp/man/RcppLdFlags.Rd | 18 Rcpp-0.12.19/Rcpp/man/RcppUnitTests.Rd | 9 Rcpp-0.12.19/Rcpp/man/loadRcppModules-deprecated.Rd | 25 Rcpp-0.12.19/Rcpp/src/attributes.cpp | 31 + Rcpp-0.12.19/Rcpp/vignettes/Rcpp-FAQ.Rmd | 120 ++-- Rcpp-0.12.19/Rcpp/vignettes/Rcpp-attributes.Rmd | 24 Rcpp-0.12.19/Rcpp/vignettes/Rcpp-extending.Rmd | 30 - Rcpp-0.12.19/Rcpp/vignettes/Rcpp-introduction.Rmd | 19 Rcpp-0.12.19/Rcpp/vignettes/Rcpp-sugar.Rmd | 4 Rcpp-0.12.19/Rcpp/vignettes/Rcpp.bib | 14 Rcpp-0.12.19/Rcpp/vignettes/figures/bootstrap.pdf |only 51 files changed, 794 insertions(+), 518 deletions(-)
Title: R Interface to Stan
Description: User-facing R functions are provided to parse, compile, test,
estimate, and analyze Stan models by accessing the header-only Stan library
provided by the 'StanHeaders' package. The Stan project develops a probabilistic
programming language that implements full Bayesian statistical inference
via Markov Chain Monte Carlo, rough Bayesian inference via 'variational'
approximation, and (optionally penalized) maximum likelihood estimation via
optimization. In all three cases, automatic differentiation is used to quickly
and accurately evaluate gradients without burdening the user with the need to
derive the partial derivatives.
Author: Jiqiang Guo [aut],
Jonah Gabry [aut],
Ben Goodrich [cre, aut],
Daniel Lee [ctb],
Krzysztof Sakrejda [ctb],
Trustees of Columbia University [cph],
Oleg Sklyar [cph] (R/cxxfunplus.R),
The R Core Team [cph] (R/pairs.R, R/dynGet.R),
Jens Oehlschlaegel-Akiyoshi [cph] (R/pairs.R),
Hadley Wickham [cph] (R/rtools.R),
Joel de Guzman [cph] (Boost),
John Fletcher [cph] (Boost),
Thomas Heller [cph] (Boost),
Eric Niebler [cph] (Boost)
Maintainer: Ben Goodrich <benjamin.goodrich@columbia.edu>
Diff between rstan versions 2.17.3 dated 2018-01-20 and 2.17.4 dated 2018-10-01
DESCRIPTION | 10 MD5 | 16 - R/rstan.R | 4 build/vignette.rds |binary inst/doc/external.html | 406 ++++++++++++++++++++++------- inst/doc/rstan.html | 570 ++++++++++++++++++++++++++++-------------- inst/doc/stanfit-objects.html | 528 +++++++++++++++++++++++++++----------- src/Makevars | 2 src/Makevars.win | 2 9 files changed, 1083 insertions(+), 455 deletions(-)
Title: 'nloptr' Plug-in for the 'R' Optimization Infrastructure
Description: Enhances the R Optimization Infrastructure ('ROI') package
with the 'NLopt' solver for solving nonlinear optimization problems.
Author: Florian Schwendinger [aut, cre]
Maintainer: Florian Schwendinger <FlorianSchwendinger@gmx.at>
Diff between ROI.plugin.nloptr versions 0.3-0 dated 2017-10-22 and 0.3-1 dated 2018-10-01
DESCRIPTION | 6 +++--- MD5 | 4 ++-- R/solve.R | 34 ++++++++-------------------------- 3 files changed, 13 insertions(+), 31 deletions(-)
More information about ROI.plugin.nloptr at CRAN
Permanent link
Title: Local Control Strategy for Robust Analysis of Cross-Sectional
Data
Description: Especially when cross-sectional data are observational, effects of treatment
selection bias and confounding are revealed by using the unsupervised, nonparametric
preprocessing methods central to Local Control (LC) Strategy. The LC objective is to
estimate the "effect-size distribution" that best quantifies a potentially causal
relationship between a numeric y-Outcome variable and a t-Treatment variable. This
t-variable may be either binary {1 = "new" vs 0 = "control"} or a numeric measure of
Exposure level. LC Strategy starts by CLUSTERING experimental units (patients) on
baseline x-Covariates, forming mutually exclusive and exhaustive BLOCKS of relatively
well-matched units. The implicit statistical model for LC is thus simple one-way ANOVA.
The Within-Block measures of effect-size are Local Rank Correlations (LRCs) when Exposure
is numeric with more than two levels. Otherwise, Treatment choice is Nested within
BLOCKS, and effect-sizes are Local Treatment Differences (LTDs) between within-cluster
y-Outcome Means ["new" minus "control"]. An Instrumental Variable (IV) method is also
provided so that Local Average y-Outcomes (LAOs) within BLOCKS may also contribute
information for effect-size inferences ...assuming that x-Covariates influence only
Treatment choice or Exposure level and otherwise have no direct effects on y-Outcome.
Author: Bob Obenchain
Maintainer: Bob Obenchain <wizbob@att.net>
Diff between LocalControlStrategy versions 1.3 dated 2018-09-21 and 1.3.1 dated 2018-10-01
DESCRIPTION | 17 ++++++++-------- MD5 | 21 ++++++++++---------- R/KSperm.R | 22 ++++++++++----------- R/LCsetup.R | 5 ++-- R/confirm.R | 18 +++++++++-------- build |only demo/00Index | 4 +-- demo/pci_bt.R | 10 ++------- demo/radon.R | 17 +++++----------- man/KSperm.Rd | 37 +++++++++++++++++++----------------- man/LocalControlStrategy-package.Rd | 20 +++++++++++++------ man/confirm.Rd | 23 +++++++++++----------- 12 files changed, 101 insertions(+), 93 deletions(-)
More information about LocalControlStrategy at CRAN
Permanent link
Title: Combination of Factorial Methods and Cluster Analysis
Description: Some functions of 'ade4' and 'stats' are combined in order to obtain a partition of the rows of a data table, with columns representing variables of scales: quantitative, qualitative or frequency.
First, a principal axes method is performed and then, a combination of Ward agglomerative hierarchical classification and K-means is performed, using some of the first coordinates obtained from the previous principal axes method. See, for example:
Lebart, L. and Piron, M. and Morineau, A. (2006).
Statistique Exploratoire Multidimensionnelle, Dunod, Paris.
In order to permit to have different weights of the elements to be clustered, the function 'kmeansW', programmed in C++, is included. It is a modification of 'kmeans'.
Some graphical functions include the option: 'gg=FALSE'. When 'gg=TRUE', they use the 'ggplot2' and 'ggrepel' packages to avoid the super-position of the labels.
Author: Campo Elias Pardo <cepardot@unal.edu.co>,
Pedro Cesar del Campo <pcdelcampon@unal.edu.co> and
Camilo Jose Torres <cjtorresj@unal.edu.co>,
with the contributions from.
Ivan Diaz <ildiazm@unal.edu.co>,
Mauricio Sadinle <msadinleg@unal.edu.co>,
Jhonathan Medina <jmedinau@unal.edu.co>.
Maintainer: Campo Elias Pardo <cepardot@unal.edu.co>
Diff between FactoClass versions 1.2.4 dated 2018-03-01 and 1.2.7 dated 2018-10-01
DESCRIPTION | 16 - MD5 | 22 + R/FactoClass.R | 612 ++++++++++++++++++++++++++--------------------------- R/FactoClass.tex.R | 6 R/cluster.carac.R | 2 R/dudi.tex.R | 6 R/plot.dudi.R | 45 ++- R/plotcc.R |only R/plotfp.R | 92 +++++-- R/supqual.R | 7 man/plot.dudi.Rd | 26 +- man/plotcc.Rd |only man/plotfp.Rd | 18 - 13 files changed, 459 insertions(+), 393 deletions(-)