Title: Identify Global Objects in R Expressions
Description: Identifies global ("unknown" or "free") objects in R expressions
by code inspection using various strategies, e.g. conservative or liberal.
The objective of this package is to make it as simple as possible to
identify global objects for the purpose of exporting them in distributed
compute environments.
Author: Henrik Bengtsson [aut, cre, cph]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between globals versions 0.12.3 dated 2018-09-17 and 0.12.4 dated 2018-10-11
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS | 10 ++++++++++ R/utils.R | 18 ++++++++++++++++-- tests/utils.R | 29 +++++++++++++++++++++++++++++ 5 files changed, 62 insertions(+), 9 deletions(-)
Title: Genome-Wide DNA Methylation Sites Screening by Use of Training
and Testing Samples
Description: A screening process utilizing training and testing samples to filter out uninformative DNA methylation sites. Surrogate variables (SVs) of DNA methylation are included in the filtering process to explain unknown factor effects.
Author: Meredith Ray, Xin Tong, Hongmei Zhang
Maintainer: Meredith Ray <maray@memphis.edu>
Diff between ttScreening versions 1.5 dated 2014-11-14 and 1.6 dated 2018-10-11
DESCRIPTION | 21 ++-- MD5 | 12 +- NAMESPACE | 10 +- R/ttScreening.R | 197 ++++++++++++++++++++------------------------- man/sva2.Rd | 2 man/ttScreening-package.Rd | 12 +- man/ttScreening.Rd | 47 ++++++---- 7 files changed, 148 insertions(+), 153 deletions(-)
Title: Analysis of the International Trade Network
Description: Functions to clean and process international trade data into an international trade network (ITN) are provided. It then provides a set a functions to undertake analysis and plots of the ITN (extract the backbone, centrality, blockmodels, clustering). Examining the key players in the ITN and regional trade patterns.
Author: Matthew Smith
Maintainer: Matthew Smith <matt_smith.90@hotmail.co.uk>
Diff between ITNr versions 0.2.0 dated 2018-04-26 and 0.3.0 dated 2018-10-11
DESCRIPTION | 15 ++++----- MD5 | 53 +++++++++++++++++----------------- NAMESPACE | 1 R/Comtradrclean_function.R | 2 - R/ELEnet16_data.R | 4 +- R/ELEnetList_data.R | 4 +- R/ITN_map_plot_function.R | 1 R/ITNblockse_function.R | 4 +- R/ITNcluster_function.R | 2 - R/ITNdegdist_function.R | 2 - R/ITNhistdegdist_function.R | 4 +- R/ITNplotset_function.R | 2 - R/ITNproperties_function.R | 4 +- R/cap_lat_lon_data.R | 2 - R/getBackbone_function.R | 22 +++++++------- R/plot_degree_distribution_function.R | 4 +- man/Comtradrclean.Rd | 2 - man/ELEnet16.Rd | 4 +- man/ELEnetList.Rd | 4 +- man/ITNblock_se.Rd | 4 +- man/ITNcluster.Rd | 2 - man/ITNdegdist.Rd | 2 - man/ITNhistdegdist.Rd | 4 +- man/ITNplotset.Rd | 2 - man/cap_lat_lon.Rd | 2 - man/figures |only man/get.backbone.Rd | 2 - man/plot_degree_distribution.Rd | 4 +- 28 files changed, 80 insertions(+), 78 deletions(-)
Title: R Package Installation from Remote Repositories, Including
'GitHub'
Description: Download and install R packages stored in 'GitHub',
'BitBucket', or plain 'subversion' or 'git' repositories. This package
is a lightweight replacement of the 'install_*' functions in 'devtools'.
Indeed most of the code was copied over from 'devtools'.
Author: Gábor Csárdi [aut, cre],
Hadley Wickham [aut],
Winston Chang [aut],
Jim Hester [aut],
RStudio [cph],
Martin Morgan [aut],
Dan Tenenbaum [aut],
Mango Solutions [cph]
Maintainer: Gábor Csárdi <csardi.gabor@gmail.com>
Diff between remotes versions 1.1.1 dated 2017-12-20 and 2.0.0 dated 2018-10-11
remotes-1.1.1/remotes/tests/testthat/test-bitbucket.R |only remotes-1.1.1/remotes/tests/testthat/test-remotes.R |only remotes-2.0.0/remotes/DESCRIPTION | 12 remotes-2.0.0/remotes/MD5 | 144 +- remotes-2.0.0/remotes/NAMESPACE | 44 remotes-2.0.0/remotes/NEWS.md | 114 ++ remotes-2.0.0/remotes/R/bioc.R | 104 +- remotes-2.0.0/remotes/R/cran.R | 14 remotes-2.0.0/remotes/R/decompress.R | 20 remotes-2.0.0/remotes/R/deps.R | 485 +++++++--- remotes-2.0.0/remotes/R/devel.R | 5 remotes-2.0.0/remotes/R/download.R | 42 remotes-2.0.0/remotes/R/git.R | 27 remotes-2.0.0/remotes/R/github.R | 140 ++ remotes-2.0.0/remotes/R/install-bioc.R |only remotes-2.0.0/remotes/R/install-bitbucket.R | 161 ++- remotes-2.0.0/remotes/R/install-cran.R |only remotes-2.0.0/remotes/R/install-dev.R |only remotes-2.0.0/remotes/R/install-git.R | 163 ++- remotes-2.0.0/remotes/R/install-github.R | 287 ++--- remotes-2.0.0/remotes/R/install-gitlab.R |only remotes-2.0.0/remotes/R/install-local.R | 56 + remotes-2.0.0/remotes/R/install-remote.R | 169 +++ remotes-2.0.0/remotes/R/install-svn.R | 108 +- remotes-2.0.0/remotes/R/install-url.R | 44 remotes-2.0.0/remotes/R/install-version.R | 30 remotes-2.0.0/remotes/R/install.R | 141 ++ remotes-2.0.0/remotes/R/json.R | 14 remotes-2.0.0/remotes/R/package-deps.R | 7 remotes-2.0.0/remotes/R/parse-git.R |only remotes-2.0.0/remotes/R/submodule.R |only remotes-2.0.0/remotes/R/utils.R | 248 ++++- remotes-2.0.0/remotes/README.md |only remotes-2.0.0/remotes/build |only remotes-2.0.0/remotes/inst/README.markdown | 87 + remotes-2.0.0/remotes/inst/doc |only remotes-2.0.0/remotes/man/bioc_install_repos.Rd | 8 remotes-2.0.0/remotes/man/download_version.Rd | 4 remotes-2.0.0/remotes/man/github_refs.Rd | 4 remotes-2.0.0/remotes/man/gitlab_pat.Rd |only remotes-2.0.0/remotes/man/install_bioc.Rd |only remotes-2.0.0/remotes/man/install_bitbucket.Rd | 69 + remotes-2.0.0/remotes/man/install_cran.Rd |only remotes-2.0.0/remotes/man/install_deps.Rd | 41 remotes-2.0.0/remotes/man/install_dev.Rd |only remotes-2.0.0/remotes/man/install_git.Rd | 58 + remotes-2.0.0/remotes/man/install_github.Rd | 61 - remotes-2.0.0/remotes/man/install_gitlab.Rd |only remotes-2.0.0/remotes/man/install_local.Rd | 47 remotes-2.0.0/remotes/man/install_svn.Rd | 53 - remotes-2.0.0/remotes/man/install_url.Rd | 46 remotes-2.0.0/remotes/man/install_version.Rd | 60 + remotes-2.0.0/remotes/man/package_deps.Rd | 49 - remotes-2.0.0/remotes/man/parse-git-repo.Rd | 6 remotes-2.0.0/remotes/man/standardise_dep.Rd |only remotes-2.0.0/remotes/man/update_packages.Rd | 46 remotes-2.0.0/remotes/tests/testthat/helper.R | 22 remotes-2.0.0/remotes/tests/testthat/invalidpkg |only remotes-2.0.0/remotes/tests/testthat/noremotes/DESCRIPTION | 2 remotes-2.0.0/remotes/tests/testthat/submodule |only remotes-2.0.0/remotes/tests/testthat/test-bioc.R | 67 + remotes-2.0.0/remotes/tests/testthat/test-deps.R | 301 +++++- remotes-2.0.0/remotes/tests/testthat/test-devel.R |only remotes-2.0.0/remotes/tests/testthat/test-download.R | 7 remotes-2.0.0/remotes/tests/testthat/test-git.R | 8 remotes-2.0.0/remotes/tests/testthat/test-github.R | 54 + remotes-2.0.0/remotes/tests/testthat/test-install-bioc.R |only remotes-2.0.0/remotes/tests/testthat/test-install-bitbucket.R |only remotes-2.0.0/remotes/tests/testthat/test-install-cran.R |only remotes-2.0.0/remotes/tests/testthat/test-install-deps.R | 3 remotes-2.0.0/remotes/tests/testthat/test-install-dev.R |only remotes-2.0.0/remotes/tests/testthat/test-install-git.R | 94 + remotes-2.0.0/remotes/tests/testthat/test-install-github.R | 156 --- remotes-2.0.0/remotes/tests/testthat/test-install-gitlab.R |only remotes-2.0.0/remotes/tests/testthat/test-install-local.R | 14 remotes-2.0.0/remotes/tests/testthat/test-install-remote.R |only remotes-2.0.0/remotes/tests/testthat/test-install-svn.R | 37 remotes-2.0.0/remotes/tests/testthat/test-install-url.R | 16 remotes-2.0.0/remotes/tests/testthat/test-install-version.R | 14 remotes-2.0.0/remotes/tests/testthat/test-install.R |only remotes-2.0.0/remotes/tests/testthat/test-json.R | 9 remotes-2.0.0/remotes/tests/testthat/test-package-deps.R | 13 remotes-2.0.0/remotes/tests/testthat/test-package.R |only remotes-2.0.0/remotes/tests/testthat/test-parse-git.R | 48 remotes-2.0.0/remotes/tests/testthat/test-submodule.R |only remotes-2.0.0/remotes/tests/testthat/test-utils.R | 52 + remotes-2.0.0/remotes/vignettes |only 87 files changed, 3157 insertions(+), 978 deletions(-)
Title: Simulate Package Installation and Attach
Description: Simulates the process of installing a package
and then attaching it. This is a key part of the 'devtools' package as it
allows you to rapidly iterate while developing a package.
Author: Hadley Wickham [aut],
Jim Hester [aut, cre],
Winston Chang [aut],
RStudio [cph],
R Core team [ctb] (Some namespace and vignette code extracted from base
R)
Maintainer: Jim Hester <james.hester@rstudio.com>
Diff between pkgload versions 1.0.0 dated 2018-07-07 and 1.0.1 dated 2018-10-11
DESCRIPTION | 6 +++--- MD5 | 22 +++++++++++----------- NEWS.md | 13 +++++++++++++ R/dev-help.r | 4 ++-- R/dev-topic.r | 2 +- R/load-dll.r | 1 + R/package.r | 5 ++++- R/remove-s4-class.r | 10 ++++++++-- README.md | 2 +- tests/testthat/test-help.r | 4 ++++ tests/testthat/test-s4-export.r | 17 ++++++++++++++--- tests/testthat/testS4export/R/all.r | 3 ++- 12 files changed, 64 insertions(+), 25 deletions(-)
Title: Data Science Labs
Description: Datasets and functions that can be used for data analysis practice, homework and projects in data science courses and workshops.
Author: Rafael A. Irizarry
Maintainer: Rafael A. Irizarry <rafa@jimmy.harvard.edu>
Diff between dslabs versions 0.4.0 dated 2018-08-02 and 0.5.0 dated 2018-10-11
DESCRIPTION | 10 +-- MD5 | 63 ++++++++++---------- R/admissions.R | 12 +-- R/divorce_margarine.R | 14 ++-- R/gapminder.R | 3 R/heights.R | 2 R/mnist_27.R | 14 +--- R/movielens.R | 4 - R/murders.R | 4 - R/olive.R | 18 ++--- R/polls_2008.R | 4 - R/polls_us_election_2016.R | 8 +- R/reported_heights.R | 4 - R/research_funding_rates.R | 22 +++--- R/rfalling_object.R | 5 - R/tissue_gene_expression.R |only R/us_contagious_disease.R | 6 - data/datalist | 1 data/tissue_gene_expression.rda |only inst/extdata/RD-Mortality-Report_2015-18-180531.pdf |only inst/script/make-tissue-gene-expression.R |only man/admissions.Rd | 10 +-- man/divorce_margarine.Rd | 14 ++-- man/gapminder.Rd | 3 man/mnist_27.Rd | 9 +- man/movielens.Rd | 2 man/murders.Rd | 2 man/olive.Rd | 18 ++--- man/polls_2008.Rd | 4 - man/polls_us_election_2016.Rd | 6 - man/reported_heights.Rd | 2 man/research_funding_rates.Rd | 20 +++--- man/rfalling_object.Rd | 11 +-- man/tissue_gene_expression.Rd |only man/us_contagious_diseases.Rd | 4 - 35 files changed, 156 insertions(+), 143 deletions(-)
Title: Variational Bayes Latent Position Cluster Model for Networks
Description: Fit and simulate latent position and cluster
models for network data, using a fast Variational Bayes approximation.
Author: Michael Salter-Townshend
Maintainer: Michael Salter-Townshend <mike.saltertownshend@gmail.com>
Diff between VBLPCM versions 2.4.4 dated 2015-12-18 and 2.4.5 dated 2018-10-11
CHANGELOG | 1 + DESCRIPTION | 11 +++++------ MD5 | 9 +++++---- R/gof.vblpcm.R | 2 +- cleanup |only man/VBLPCM-package.Rd | 4 ++-- 6 files changed, 14 insertions(+), 13 deletions(-)
Title: Loading Fonts into R
Description: Loading system fonts and Google Fonts
<https://fonts.google.com/> into R, in order to
support other packages such as 'R2SWF' and 'showtext'.
Author: Yixuan Qiu and authors/contributors of the
included fonts. See file AUTHORS for details.
Maintainer: Yixuan Qiu <yixuan.qiu@cos.name>
Diff between sysfonts versions 0.7.2 dated 2018-01-16 and 0.8 dated 2018-10-11
DESCRIPTION | 10 - MD5 | 32 +++-- NAMESPACE | 2 R/font.R | 34 ++++-- R/google.R | 120 ++++++++++++++++----- inst/NEWS.Rd | 246 ++++++++++++++++++++++++-------------------- inst/fonts/webfonts.bz2 |binary man/font_add.Rd | 242 +++++++++++++++++++++---------------------- man/font_add_google.Rd | 156 ++++++++++++++------------- man/font_families.Rd | 80 +++++++------- man/font_families_google.Rd | 79 +++++++------- man/font_files.Rd | 72 +++++++----- man/font_info_google.Rd |only man/font_paths.Rd | 90 ++++++++-------- src/font_name.c |only src/register_routines.c | 1 src/sysfonts-win.def | 1 src/sysfonts.h | 8 - 18 files changed, 657 insertions(+), 516 deletions(-)
Title: Data Exchange Between R and 'LabKey' Server
Description: The 'LabKey' client library for R makes it easy for R users to
load live data from a 'LabKey' Server, <http://www.labkey.com/>,
into the R environment for analysis, provided users have permissions
to read the data. It also enables R users to insert, update, and
delete records stored on a 'LabKey' Server, provided they have appropriate
permissions to do so.
Author: Peter Hussey
Maintainer: Cory Nathe <cnathe@labkey.com>
Diff between Rlabkey versions 2.2.2 dated 2018-07-12 and 2.2.3 dated 2018-10-11
DESCRIPTION | 8 +- MD5 | 53 +++++++++++-------- NAMESPACE | 10 ++- NEWS | 5 + R/labkey.deleteRows.R | 8 +- R/labkey.domain.R | 7 +- R/labkey.executeSql.R | 7 +- R/labkey.experiment.R |only R/labkey.getFolders.R | 5 - R/labkey.getQueryInfo.R | 7 +- R/labkey.getQueryLists.R | 7 +- R/labkey.getSchemas.R | 7 -- R/labkey.importRows.R | 8 +- R/labkey.insertRows.R | 10 ++- R/labkey.rstudio.R | 55 +++++++++++++++++++- R/labkey.saveBatch.R | 10 ++- R/labkey.selectRows.R | 7 +- R/labkey.transform.R |only R/labkey.updateRows.R | 8 +- build/vignette.rds |binary inst/doc/RlabkeyExample.pdf |binary man/Rlabkey-package.Rd | 4 - man/labkey.experiment.SAMPLE_DERIVATION_PROTOCOL.Rd |only man/labkey.experiment.createData.Rd |only man/labkey.experiment.createMaterial.Rd |only man/labkey.experiment.createRun.Rd |only man/labkey.experiment.saveBatch.Rd |only man/labkey.rstudio.initRStudio.Rd |only man/labkey.rstudio.initReport.Rd | 4 + man/labkey.rstudio.initSession.Rd |only man/labkey.saveBatch.Rd | 6 +- man/labkey.transform.getRunPropertyValue.Rd |only man/labkey.transform.readRunPropertiesFile.Rd |only 33 files changed, 163 insertions(+), 73 deletions(-)
Title: Reading Bibliometric Data from Lattes Platform
Description: A simple API for downloading and reading xml data directly from Lattes <http://lattes.cnpq.br/>.
Author: Marcelo Perlin [aut, cre]
Maintainer: Marcelo Perlin <marceloperlin@gmail.com>
Diff between GetLattesData versions 1.1 dated 2018-08-19 and 1.2 dated 2018-10-11
GetLattesData-1.1/GetLattesData/inst/extdata/K4440252H7_2017-09-04.zip |only GetLattesData-1.2/GetLattesData/DESCRIPTION | 10 GetLattesData-1.2/GetLattesData/MD5 | 31 +- GetLattesData-1.2/GetLattesData/NAMESPACE | 1 GetLattesData-1.2/GetLattesData/NEWS.md | 13 + GetLattesData-1.2/GetLattesData/R/gld_get_lattes_data.R | 14 + GetLattesData-1.2/GetLattesData/R/gld_get_lattes_data_from_zip.R |only GetLattesData-1.2/GetLattesData/R/gld_get_papers_info.R | 6 GetLattesData-1.2/GetLattesData/R/gld_read_lattes_zip.R | 16 - GetLattesData-1.2/GetLattesData/README.md | 4 GetLattesData-1.2/GetLattesData/inst/doc/gld_vignette-ReadLattes.R | 72 +++--- GetLattesData-1.2/GetLattesData/inst/doc/gld_vignette-ReadLattes.Rmd | 22 + GetLattesData-1.2/GetLattesData/inst/doc/gld_vignette-ReadLattes.html | 111 ++++++++-- GetLattesData-1.2/GetLattesData/inst/extdata/3262699324398819.zip |only GetLattesData-1.2/GetLattesData/inst/extdata/8373564643000623.zip |only GetLattesData-1.2/GetLattesData/man/gld_get_lattes_data.Rd | 3 GetLattesData-1.2/GetLattesData/man/gld_get_lattes_data_from_zip.Rd |only GetLattesData-1.2/GetLattesData/man/gld_read_zip.Rd | 2 GetLattesData-1.2/GetLattesData/vignettes/gld_vignette-ReadLattes.Rmd | 22 + 19 files changed, 230 insertions(+), 97 deletions(-)
Title: Easily Carry Out Latent Profile Analysis (LPA) Using Open-Source
or Commercial Software
Description: An interface to the 'mclust' package to easily carry out latent profile
analysis ("LPA"). Provides functionality to estimate commonly-specified models.
Follows a tidy approach, in that output is in the form of a data frame that can
subsequently be computed on. Also has functions to interface to the commercial
'MPlus' software via the 'MplusAutomation' package.
Author: Joshua M Rosenberg [aut, cre],
Jennifer A Schmidt [ctb],
Patrick N Beymer [ctb],
Daniel Anderson [ctb],
Caspar van Lissa [ctb]
Maintainer: Joshua M Rosenberg <jmichaelrosenberg@gmail.com>
Diff between tidyLPA versions 0.2.1 dated 2018-10-11 and 0.2.2 dated 2018-10-11
DESCRIPTION | 6 MD5 | 26 - NEWS.md | 5 R/estimate-profiles-mplus.R | 724 +++++++++++++++---------------- R/helpers.R | 2 README.md | 2 build/vignette.rds |binary inst/CITATION |only inst/doc/Introduction_to_tidyLPA.Rmd | 4 inst/doc/Introduction_to_tidyLPA.html | 5 inst/doc/brief-overview.Rmd |only inst/doc/brief-overview.html |only man/extract_LL_mplus.Rd | 2 man/figures/README-unnamed-chunk-5-1.png |binary vignettes/Introduction_to_tidyLPA.Rmd | 4 vignettes/brief-overview.Rmd |only 16 files changed, 392 insertions(+), 388 deletions(-)
Title: Wrapper Functions for 'ODAM' (Open Data for Access and Mining)
Web Services
Description: 'ODAM' (Open Data for Access and Mining) is a framework that implements a simple way to make research data broadly accessible and fully available for reuse, including by a script language such as R. The main purpose is to make a data set accessible online with a minimal effort from the data provider, and to allow any scientists or bioinformaticians to be able to explore the data set and then extract a subpart or the totality of the data according to their needs. The Rodam package has only one class, 'odamws', that provides methods to allow you to retrieve online data using 'ODAM' Web Services. This obviously requires that data are implemented according the 'ODAM' approach , namely that the data subsets were deposited in the suitable data repository in the form of TSV files associated with their metadata also described in TSV files. See <http://www.slideshare.net/danieljacob771282/odam-open-data-access-and-mining>.
Author: Daniel Jacob [cre, aut] (<https://orcid.org/0000-0002-6687-7169>)
Maintainer: Daniel Jacob <daniel.jacob@inra.fr>
Diff between Rodam versions 0.1.3 dated 2018-06-01 and 0.1.4 dated 2018-10-11
Rodam-0.1.3/Rodam/inst/doc/odamws.R |only Rodam-0.1.3/Rodam/inst/doc/odamws.Rmd |only Rodam-0.1.3/Rodam/inst/doc/odamws.html |only Rodam-0.1.3/Rodam/vignettes/odamws.Rmd |only Rodam-0.1.4/Rodam/DESCRIPTION | 20 +++-- Rodam-0.1.4/Rodam/MD5 | 16 ++-- Rodam-0.1.4/Rodam/R/odamws.R | 131 ++++++++++++++++++++------------- Rodam-0.1.4/Rodam/build/vignette.rds |binary Rodam-0.1.4/Rodam/inst/doc/Rodam.R |only Rodam-0.1.4/Rodam/inst/doc/Rodam.Rmd |only Rodam-0.1.4/Rodam/inst/doc/Rodam.html |only Rodam-0.1.4/Rodam/man/Rodam-package.Rd | 2 Rodam-0.1.4/Rodam/vignettes/Rodam.Rmd |only 13 files changed, 103 insertions(+), 66 deletions(-)
Title: Global Surface Summary of the Day ('GSOD') Weather Data Client
Description: Provides automated downloading, parsing, cleaning, unit conversion
and formatting of Global Surface Summary of the Day ('GSOD') weather data
from the from the USA National Centers for Environmental Information
('NCEI') for use in R. Units are converted from from United States
Customary System ('USCS') units to International System of Units ('SI').
Stations may be individually checked for number of missing days defined by
the user, where stations with too many missing observations are omitted.
Only stations with valid reported latitude and longitude values are
permitted in the final data. Additional useful elements, saturation vapour
pressure ('es'), actual vapour pressure ('ea') and relative humidity are
calculated from the original data and included in the final data set. The
resulting data include station identification information, state, country,
latitude, longitude, elevation, weather observations and associated flags.
Additional data are included with this R package: a list of elevation values
for stations between -60 and 60 degrees latitude derived from the Shuttle
Radar Topography Measuring Mission ('SRTM'). For information on the 'GSOD'
data from 'NCEI', please see the 'GSOD' 'readme.txt' file available from,
<http://www1.ncdc.noaa.gov/pub/data/gsod/readme.txt>.
Author: Adam Sparks [aut, cre] (<https://orcid.org/0000-0002-0061-8359>),
Tomislav Hengl [aut] (<https://orcid.org/0000-0002-9921-5129>),
Andrew Nelson [aut] (<https://orcid.org/0000-0002-7249-3778>),
Hugh Parsonage [cph, ctb] (<https://orcid.org/0000-0003-4055-0835>),
Bob Rudis [cph, ctb] (<https://orcid.org/0000-0001-5670-2640>),
Gwenael Giboire [ctb] (Several bug reports in early versions and
testing feedback),
Łukasz Pawlik [ctb] (Reported bug in windspeed conversion calculation),
Ross Darnell [ctb] (Reported bug in 'Windows OS' versions causing
'GSOD' data untarring to fail)
Maintainer: Adam Sparks <adamhsparks@gmail.com>
Diff between GSODR versions 1.2.2 dated 2018-08-17 and 1.2.3 dated 2018-10-11
DESCRIPTION | 51 +- MD5 | 49 + NAMESPACE | 1 NEWS.md | 40 + R/GSODR-package.R | 55 +- R/get_GSOD.R | 80 +-- R/get_inventory.R | 83 ++- R/internal_functions.R | 97 ++- R/nearest_stations.R | 32 - R/reformat_GSOD.R | 60 +- R/update_station_list.R | 33 - R/zzz.R | 16 README.md | 12 inst/doc/GSODR.html | 499 +++++++++----------- inst/doc/Working_with_spatial_and_climate_data.html | 8 inst/extdata/isd_history.rda |binary man/GSODR.Rd | 45 + man/get_GSOD.Rd | 61 +- man/get_inventory.Rd | 31 - man/nearest_stations.Rd | 29 - man/print.GSODR.Info.Rd |only man/reformat_GSOD.Rd | 56 +- man/update_station_list.Rd | 14 tests/testthat/test-get_GSOD.R | 2 tests/testthat/test-process_gz.R | 4 tests/testthat/test-update_station_list.R | 26 - 26 files changed, 733 insertions(+), 651 deletions(-)
Title: A Package for Reconstructing Animal Paths from Solar Geolocation
Loggers
Description: Spatio-temporal locations of an animal are computed
from annotated data with a hidden Markov model via particle
filter algorithm. The package is relatively robust to varying
degrees of shading.
The hidden Markov model is described in Movement Ecology (Rakhimberdiev et al., 2015)<doi:10.1186/s40462-015-0062-5>,
general package description is in the Methods in Ecology and Evolution (Rakhimberdiev et al., 2017)<doi:10.1111/2041-210X.12765>
and package accuracy assessed in the Journal of Avian Biology (Rakhimberdiev et al. 2016)<doi:10.1111/jav.00891>.
Author: Eldar Rakhimberdiev [aut, cre],
Anatoly Saveliev [aut],
Julia Karagicheva [aut],
Simeon Lisovski [ctb]
Maintainer: Eldar Rakhimberdiev <eldar@nioz.nl>
Diff between FLightR versions 0.4.6 dated 2017-03-14 and 0.4.7 dated 2018-10-11
DESCRIPTION | 34 MD5 | 65 - R/Ports2TAGS.R | 10 R/data_import.R | 16 R/data_preparation.R | 160 ++-- R/new_plotting_functions.R | 71 + R/run_particle_filter.R | 32 R/spatial.mask.R | 6 R/summary_functions.R | 3 R/zzz.R | 2 README.md | 16 build/vignette.rds |binary inst/doc/FLightR_with_black-tailed_godwit_vignette_from_MEE_2017.Rmd | 4 inst/doc/FLightR_with_black-tailed_godwit_vignette_from_MEE_2017.html | 370 ++++++++-- man/BAStag2TAGS.Rd | 7 man/GeoLight2TAGS.Rd | 9 man/find.stationary.location.Rd | 7 man/find.times.distribution.Rd | 1 man/get.tags.data.Rd | 9 man/get_ZI_distances.Rd | 1 man/make.calibration.Rd | 14 man/make.grid.Rd | 7 man/make.prerun.object.Rd | 11 man/map.FLightR.ggmap.Rd | 13 man/plot_likelihood.Rd | 5 man/plot_lon_lat.Rd | 3 man/plot_slopes_by_location.Rd | 9 man/plot_util_distr.Rd | 13 man/run.particle.filter.Rd | 13 man/stationary.migration.summary.Rd | 1 man/twGeos2TAGS.Rd | 7 tests/testthat/helper-api-code-test.R |only tests/testthat/test_data_result_summary_and_plotting.R | 36 vignettes/FLightR_with_black-tailed_godwit_vignette_from_MEE_2017.Rmd | 4 34 files changed, 650 insertions(+), 309 deletions(-)
Title: Fish Migration Monitoring
Description: Graphical outputs and treatment for a database of fish pass
monitoring. It is a part of the 'STACOMI' open source project developed in
France by the French Agency for Biodiversity (AFB) institute to centralize
data obtained by fish pass monitoring. This version is available in French and
English. See <http://stacomir.r-forge.r-project.org/> for more information on
'STACOMI'.
Author: Cedric Briand [aut, cre],
Marion Legrand [aut],
Timothee Besse [aut]
Maintainer: Cedric Briand <cedric.briand00@gmail.com>
Diff between stacomiR versions 0.5.3.1 dated 2018-01-04 and 0.5.4.0 dated 2018-10-11
stacomiR-0.5.3.1/stacomiR/inst/config/testthat.R |only stacomiR-0.5.3.1/stacomiR/inst/examples/bilanMigrationInterannuelle_example.R |only stacomiR-0.5.3.1/stacomiR/inst/tests |only stacomiR-0.5.3.1/stacomiR/man/figures/README-rmmstandard-1.png |only stacomiR-0.5.4.0/stacomiR/DESCRIPTION | 32 stacomiR-0.5.4.0/stacomiR/MD5 | 832 +++++----- stacomiR-0.5.4.0/stacomiR/R/report_dc.R | 2 stacomiR-0.5.4.0/stacomiR/R/report_ge_weight.R | 6 stacomiR-0.5.4.0/stacomiR/R/report_mig.R | 6 stacomiR-0.5.4.0/stacomiR/R/report_mig_interannual.R | 11 stacomiR-0.5.4.0/stacomiR/R/report_mig_mult.R | 204 +- stacomiR-0.5.4.0/stacomiR/R/report_sea_age.R | 6 stacomiR-0.5.4.0/stacomiR/R/stacomi.R | 41 stacomiR-0.5.4.0/stacomiR/R/utilities.R | 18 stacomiR-0.5.4.0/stacomiR/build |only stacomiR-0.5.4.0/stacomiR/data/calcmig.csv.gz |binary stacomiR-0.5.4.0/stacomiR/data/calcmig.rda |binary stacomiR-0.5.4.0/stacomiR/data/r_dc.rda |binary stacomiR-0.5.4.0/stacomiR/data/r_df.rda |binary stacomiR-0.5.4.0/stacomiR/data/r_mig.rda |binary stacomiR-0.5.4.0/stacomiR/data/r_mig_dc.rda |binary stacomiR-0.5.4.0/stacomiR/data/r_mig_df.rda |binary stacomiR-0.5.4.0/stacomiR/data/r_mig_mult.rda |binary stacomiR-0.5.4.0/stacomiR/data/r_mig_mult_dc.rda |binary stacomiR-0.5.4.0/stacomiR/data/r_mig_mult_df.rda |binary stacomiR-0.5.4.0/stacomiR/data/r_mig_mult_ope.rda |binary stacomiR-0.5.4.0/stacomiR/data/r_mig_ope.rda |binary stacomiR-0.5.4.0/stacomiR/inst/config/generate_data.R | 28 stacomiR-0.5.4.0/stacomiR/inst/config/libraries.R | 2 stacomiR-0.5.4.0/stacomiR/inst/config/stacomi_manual_launch.r | 8 stacomiR-0.5.4.0/stacomiR/inst/config/test_vignette.R | 4 stacomiR-0.5.4.0/stacomiR/inst/cran-comments/cran-comments-v0.5.3.1.md | 26 stacomiR-0.5.4.0/stacomiR/inst/cran-comments/cran-comments-v0.5.4.0.md |only stacomiR-0.5.4.0/stacomiR/inst/doc |only stacomiR-0.5.4.0/stacomiR/inst/examples/report_annual-example.R | 3 stacomiR-0.5.4.0/stacomiR/inst/examples/report_dc-example.R | 2 stacomiR-0.5.4.0/stacomiR/inst/examples/report_mig-example.R | 1 stacomiR-0.5.4.0/stacomiR/inst/examples/report_mig_interannual-example.R | 10 stacomiR-0.5.4.0/stacomiR/inst/examples/report_mig_mult-example.R | 2 stacomiR-0.5.4.0/stacomiR/man/barplot-report_annual-method.Rd | 7 stacomiR-0.5.4.0/stacomiR/man/calcmig.Rd | 3 stacomiR-0.5.4.0/stacomiR/man/calcule-report_ge_weight-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/calcule-report_mig-method.Rd | 4 stacomiR-0.5.4.0/stacomiR/man/calcule-report_mig_char-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/calcule-report_mig_env-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/calcule-report_mig_interannual-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/calcule-report_mig_mult-method.Rd | 4 stacomiR-0.5.4.0/stacomiR/man/calcule-report_sample_char-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/calcule-report_sea_age-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/calcule-report_silver_eel-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/calcule-report_species-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/calcule.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/charge-ref_checkbox-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/charge-ref_choice-method.Rd | 10 stacomiR-0.5.4.0/stacomiR/man/charge-ref_coe-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/charge-ref_dc-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/charge-ref_df-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/charge-ref_env-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/charge-ref_list-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/charge-ref_par-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/charge-ref_parqual-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/charge-ref_parquan-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/charge-ref_stage-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/charge-ref_taxa-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/charge-ref_textbox-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/charge-ref_year-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/charge-report_annual-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/charge-report_dc-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/charge-report_df-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/charge-report_env-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/charge-report_ge_weight-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/charge-report_mig-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/charge-report_mig_char-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/charge-report_mig_env-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/charge-report_mig_interannual-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/charge-report_mig_mult-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/charge-report_ope-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/charge-report_sample_char-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/charge-report_sea_age-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/charge-report_silver_eel-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/charge-report_species-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/charge.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/charge_complement-ref_parqual-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/charge_complement.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/charge_with_filter-ref_par-method.Rd | 5 stacomiR-0.5.4.0/stacomiR/man/charge_with_filter-ref_parqual-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/charge_with_filter-ref_parquan-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/charge_with_filter-ref_stage-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/charge_with_filter-ref_taxa-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/charge_with_filter.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/chargecsv.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/choice-ref_checkbox-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/choice-ref_choice-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/choice-ref_dc-method.Rd | 4 stacomiR-0.5.4.0/stacomiR/man/choice-ref_df-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/choice-ref_env-method.Rd | 4 stacomiR-0.5.4.0/stacomiR/man/choice-ref_horodate-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/choice-ref_list-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/choice-ref_par-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/choice-ref_parqual-method.Rd | 6 stacomiR-0.5.4.0/stacomiR/man/choice-ref_stage-method.Rd | 4 stacomiR-0.5.4.0/stacomiR/man/choice-ref_taxa-method.Rd | 4 stacomiR-0.5.4.0/stacomiR/man/choice-ref_textbox-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/choice-ref_timestep-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/choice-ref_timestep_daily-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/choice-ref_year-method.Rd | 4 stacomiR-0.5.4.0/stacomiR/man/choice.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/choice_c-ref_choice-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/choice_c-ref_dc-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/choice_c-ref_df-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/choice_c-ref_env-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/choice_c-ref_horodate-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/choice_c-ref_list-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/choice_c-ref_par-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/choice_c-ref_stage-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/choice_c-ref_taxa-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/choice_c-ref_textbox-method.Rd | 4 stacomiR-0.5.4.0/stacomiR/man/choice_c-ref_timestep_daily-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/choice_c-ref_year-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/choice_c-report_annual-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/choice_c-report_dc-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/choice_c-report_df-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/choice_c-report_env-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/choice_c-report_ge_weight-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/choice_c-report_mig-method.Rd | 4 stacomiR-0.5.4.0/stacomiR/man/choice_c-report_mig_char-method.Rd | 7 stacomiR-0.5.4.0/stacomiR/man/choice_c-report_mig_env-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/choice_c-report_mig_interannual-method.Rd | 5 stacomiR-0.5.4.0/stacomiR/man/choice_c-report_mig_mult-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/choice_c-report_sample_char-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/choice_c-report_sea_age-method.Rd | 8 stacomiR-0.5.4.0/stacomiR/man/choice_c-report_silver_eel-method.Rd | 5 stacomiR-0.5.4.0/stacomiR/man/choice_c-report_species-method.Rd | 5 stacomiR-0.5.4.0/stacomiR/man/choice_c.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/choicemult-ref_choice-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/choicemult-ref_dc-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/choicemult-ref_horodate-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/choicemult-ref_par-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/choicemult-ref_parqual-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/choicemult-ref_stage-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/choicemult-ref_taxa-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/choicemult-ref_timestep-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/choicemult.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/coef_durif.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/colortable.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/connect-report_annual-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/connect-report_dc-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/connect-report_df-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/connect-report_env-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/connect-report_ge_weight-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/connect-report_mig-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/connect-report_mig_char-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/connect-report_mig_env-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/connect-report_mig_interannual-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/connect-report_mig_mult-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/connect-report_ope-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/connect-report_sample_char-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/connect-report_sea_age-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/connect-report_silver_eel-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/connect-report_species-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/createmessage.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/current_end_date-ref_timestep-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/current_end_date.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/currentstart_date-ref_timestep-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/currentstart_date.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/end_date-ref_timestep-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/end_date.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/envir_stacomi.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/figures/README-rmmmult-1.png |binary stacomiR-0.5.4.0/stacomiR/man/figures/README-rmmstd-1.png |only stacomiR-0.5.4.0/stacomiR/man/figures/README-silver-1.png |binary stacomiR-0.5.4.0/stacomiR/man/figures/StationComptage.png |only stacomiR-0.5.4.0/stacomiR/man/figures/interface_graph_taille_sat.png |only stacomiR-0.5.4.0/stacomiR/man/fun_aggreg_for_plot.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/fun_char_spe.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/fun_date_extraction.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/fun_report_mig_interannual.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/fun_report_mig_mult.Rd | 5 stacomiR-0.5.4.0/stacomiR/man/fun_report_mig_mult_overlaps.Rd | 7 stacomiR-0.5.4.0/stacomiR/man/fun_stage_durif.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/fun_table_per_dis.Rd | 4 stacomiR-0.5.4.0/stacomiR/man/fun_weight_conversion.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/fun_write_monthly.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/funbarchart1DC.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/funbarchart1DF.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/funbarchartDC.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/funbarchartDF.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/funboxDC.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/funboxDF.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/funboxplotreport_sample_char.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/funchartDC.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/funchartDF.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/fundensityreport_sample_char.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/fungraph.Rd | 5 stacomiR-0.5.4.0/stacomiR/man/fungraph_glasseel.Rd | 5 stacomiR-0.5.4.0/stacomiR/man/funout.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/funplotreport_sea_age.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/funplotreport_silver_eel.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/funpointreport_sample_char.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/funstat.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/funstat_daily.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/funtable.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/funtableDC.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/funtableDF.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/funtablereport_ge_weight.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/funtablereport_sample_char.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/funtablereport_sea_age.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/funtablereport_silver_eel.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/get_step_label-ref_timestep-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/get_step_label.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/get_year-ref_timestep-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/get_year.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/getdateDebut-ref_timestep-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/getdateDebut.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/getdbname.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/getnocurrent_step-ref_timestep-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/getnocurrent_step.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/getvalue-ref_period-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/getvalue.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/graphdate.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/hTablereport_mig.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/hTablereport_mig_mult.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/h_report_dc.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/h_report_df.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/h_report_dfdc.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/h_report_env.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/h_report_envgraph.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/h_report_ge_weight.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/h_report_mig.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/h_report_mig_annual.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/h_report_mig_char.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/h_report_mig_env.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/h_report_mig_interannual.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/h_report_mig_mult.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/h_report_mig_mult_graph.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/h_report_mig_multcalc.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/h_report_mig_multgraph2.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/h_report_mig_multgraph3.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/h_report_migcalc.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/h_report_miggraph.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/h_report_miggraph2.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/h_report_migwrite.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/h_report_ope.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/h_report_pigment_stages.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/h_report_sample_char.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/h_report_sea_age.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/h_report_silver.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/h_report_size.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/h_report_species.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/hbarplotreport_annual.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/hbilespcalc.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/hbmCcalc.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/hbmCplotcrossed.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/hbmCplotqual.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/hbmCplotquan.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/hbmCstat.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/hbmmCEcalc.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/hbmmCEgraph.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/hcalc.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/hexp.Rd | 1 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stacomiR-0.5.4.0/stacomiR/man/model-report_ge_weight-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/model.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/plot-report_annual-missing-method.Rd | 7 stacomiR-0.5.4.0/stacomiR/man/plot-report_dc-ANY-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/plot-report_df-ANY-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/plot-report_env-missing-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/plot-report_ge_weight-missing-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/plot-report_mig-ANY-method.Rd | 5 stacomiR-0.5.4.0/stacomiR/man/plot-report_mig_char-missing-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/plot-report_mig_env-missing-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/plot-report_mig_interannual-missing-method.Rd | 5 stacomiR-0.5.4.0/stacomiR/man/plot-report_mig_mult-missing-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/plot-report_sample_char-missing-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/plot-report_sea_age-missing-method.Rd | 4 stacomiR-0.5.4.0/stacomiR/man/plot-report_silver_eel-missing-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/plot-report_species-missing-method.Rd | 5 stacomiR-0.5.4.0/stacomiR/man/print-report_dc-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/print-report_df-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/print-report_mig-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/print-report_mig_mult-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/print-report_sample_char-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/print-report_sea_age-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/print-report_silver_eel-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/progress_bar.Rd | 4 stacomiR-0.5.4.0/stacomiR/man/quitte.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/r_ann.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/r_ann_adour.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/r_dc.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/r_df.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/r_env.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/r_gew.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/r_mig.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/r_mig_char.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/r_mig_dc.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/r_mig_df.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/r_mig_env.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/r_mig_interannual.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/r_mig_interannual_vichy.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/r_mig_mult.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/r_mig_mult_dc.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/r_mig_mult_df.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/r_mig_mult_ope.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/r_mig_ope.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/r_sample_char.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/r_seaa.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/r_silver.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/ref_checkbox-class.Rd | 12 stacomiR-0.5.4.0/stacomiR/man/ref_choice-class.Rd | 12 stacomiR-0.5.4.0/stacomiR/man/ref_coe-class.Rd | 12 stacomiR-0.5.4.0/stacomiR/man/ref_dc-class.Rd | 12 stacomiR-0.5.4.0/stacomiR/man/ref_df-class.Rd | 10 stacomiR-0.5.4.0/stacomiR/man/ref_env-class.Rd | 3 stacomiR-0.5.4.0/stacomiR/man/ref_horodate-class.Rd | 12 stacomiR-0.5.4.0/stacomiR/man/ref_list-class.Rd | 11 stacomiR-0.5.4.0/stacomiR/man/ref_par-class.Rd | 12 stacomiR-0.5.4.0/stacomiR/man/ref_parqual-class.Rd | 11 stacomiR-0.5.4.0/stacomiR/man/ref_parquan-class.Rd | 10 stacomiR-0.5.4.0/stacomiR/man/ref_period-class.Rd | 6 stacomiR-0.5.4.0/stacomiR/man/ref_stage-class.Rd | 11 stacomiR-0.5.4.0/stacomiR/man/ref_taxa-class.Rd | 12 stacomiR-0.5.4.0/stacomiR/man/ref_textbox-class.Rd | 2 stacomiR-0.5.4.0/stacomiR/man/ref_timestep-class.Rd | 10 stacomiR-0.5.4.0/stacomiR/man/ref_timestepChar-class.Rd | 8 stacomiR-0.5.4.0/stacomiR/man/ref_timestep_daily-class.Rd | 8 stacomiR-0.5.4.0/stacomiR/man/ref_year-class.Rd | 12 stacomiR-0.5.4.0/stacomiR/man/report_annual-class.Rd | 16 stacomiR-0.5.4.0/stacomiR/man/report_dc-class.Rd | 16 stacomiR-0.5.4.0/stacomiR/man/report_df-class.Rd | 14 stacomiR-0.5.4.0/stacomiR/man/report_env-class.Rd | 13 stacomiR-0.5.4.0/stacomiR/man/report_ge_weight-class.Rd | 13 stacomiR-0.5.4.0/stacomiR/man/report_mig-class.Rd | 14 stacomiR-0.5.4.0/stacomiR/man/report_mig_char-class.Rd | 16 stacomiR-0.5.4.0/stacomiR/man/report_mig_env-class.Rd | 19 stacomiR-0.5.4.0/stacomiR/man/report_mig_interannual-class.Rd | 23 stacomiR-0.5.4.0/stacomiR/man/report_mig_mult-class.Rd | 15 stacomiR-0.5.4.0/stacomiR/man/report_ope-class.Rd | 8 stacomiR-0.5.4.0/stacomiR/man/report_sample_char-class.Rd | 14 stacomiR-0.5.4.0/stacomiR/man/report_sea_age-class.Rd | 14 stacomiR-0.5.4.0/stacomiR/man/report_silver_eel-class.Rd | 14 stacomiR-0.5.4.0/stacomiR/man/report_species-class.Rd | 13 stacomiR-0.5.4.0/stacomiR/man/set_starting_date-ref_timestep-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/set_starting_date.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/setasqualitative-report_mig_char-method.Rd | 4 stacomiR-0.5.4.0/stacomiR/man/setasqualitative.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/setref_horodate-ref_horodate-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/split_per_day.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/stacomi.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/stacomiR-package.Rd | 31 stacomiR-0.5.4.0/stacomiR/man/stacomi_installed.Rd |only stacomiR-0.5.4.0/stacomiR/man/summary-report_dc-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/summary-report_df-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/summary-report_mig-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/summary-report_mig_char-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/summary-report_mig_interannual-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/summary-report_mig_mult-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/summary-report_sample_char-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/summary-report_sea_age-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/summary-report_silver_eel-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/summary-report_species-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/supprime-ref_coe-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/supprime-report_mig_interannual-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/supprime-report_sea_age-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/supprime.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/validity_ref_horodate.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/validity_year.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/vector_to_listsql.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/write_database-report_ge_weight-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/write_database-report_mig-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/write_database-report_sea_age-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/write_database.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/xtable-report_annual-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/man/xtable-report_mig_char-method.Rd | 1 stacomiR-0.5.4.0/stacomiR/tests |only stacomiR-0.5.4.0/stacomiR/vignettes |only 407 files changed, 946 insertions(+), 1188 deletions(-)
Title: Cubature over Polygonal Domains
Description: Numerical integration of continuously differentiable
functions f(x,y) over simple closed polygonal domains.
The following cubature methods are implemented:
product Gauss cubature (Sommariva and Vianello, 2007,
<doi:10.1007/s10543-007-0131-2>),
the simple two-dimensional midpoint rule
(wrapping 'spatstat' functions),
adaptive cubature for radially symmetric functions via line
integrate() along the polygon boundary (Meyer and Held, 2014,
<doi:10.1214/14-AOAS743>, Supplement B),
and integration of the bivariate Gaussian density based on a
triangulation of the polygonal domain.
For simple integration along the axes, the packages 'cubature'
and 'R2Cuba' are more appropriate.
Author: Sebastian Meyer [aut, cre, trl]
(<https://orcid.org/0000-0002-1791-9449>),
Leonhard Held [ths],
Michael Hoehle [ths]
Maintainer: Sebastian Meyer <seb.meyer@fau.de>
Diff between polyCub versions 0.6.1 dated 2017-10-02 and 0.7.0 dated 2018-10-11
polyCub-0.6.1/polyCub/inst/NEWS.Rd |only polyCub-0.6.1/polyCub/inst/examples |only polyCub-0.6.1/polyCub/man/makegrid.Rd |only polyCub-0.7.0/polyCub/DESCRIPTION | 53 +- polyCub-0.7.0/polyCub/MD5 | 70 +-- polyCub-0.7.0/polyCub/NAMESPACE | 16 polyCub-0.7.0/polyCub/NEWS.md |only polyCub-0.7.0/polyCub/R/circleCub.R | 9 polyCub-0.7.0/polyCub/R/coerce-gpc-methods.R | 18 polyCub-0.7.0/polyCub/R/coerce-sp-methods.R | 42 - polyCub-0.7.0/polyCub/R/plotpolyf.R | 25 - polyCub-0.7.0/polyCub/R/polyCub.R | 24 - polyCub-0.7.0/polyCub/R/polyCub.SV.R | 36 - polyCub-0.7.0/polyCub/R/polyCub.exact.Gauss.R | 11 polyCub-0.7.0/polyCub/R/polyCub.iso.R | 52 -- polyCub-0.7.0/polyCub/R/polyCub.midpoint.R | 23 - polyCub-0.7.0/polyCub/R/tools.R | 17 polyCub-0.7.0/polyCub/R/xylist.R | 2 polyCub-0.7.0/polyCub/R/zzz.R | 70 +-- polyCub-0.7.0/polyCub/README.md | 379 ++++++++++++++--- polyCub-0.7.0/polyCub/man/checkintrfr.Rd | 16 polyCub-0.7.0/polyCub/man/circleCub.Gauss.Rd | 9 polyCub-0.7.0/polyCub/man/coerce-gpc-methods.Rd | 14 polyCub-0.7.0/polyCub/man/coerce-sp-methods.Rd | 15 polyCub-0.7.0/polyCub/man/gpclibPermit.Rd | 4 polyCub-0.7.0/polyCub/man/plotpolyf.Rd | 8 polyCub-0.7.0/polyCub/man/polyCub-package.Rd | 61 +- polyCub-0.7.0/polyCub/man/polyCub.Rd | 133 ++++- polyCub-0.7.0/polyCub/man/polyCub.SV.Rd | 16 polyCub-0.7.0/polyCub/man/polyCub.exact.Gauss.Rd | 5 polyCub-0.7.0/polyCub/man/polyCub.iso.Rd | 42 + polyCub-0.7.0/polyCub/man/polyCub.midpoint.Rd | 3 polyCub-0.7.0/polyCub/man/polygauss.Rd | 3 polyCub-0.7.0/polyCub/tests/testthat/test-NWGL.R | 30 + polyCub-0.7.0/polyCub/tests/testthat/test-polyCub.R | 9 polyCub-0.7.0/polyCub/tests/testthat/test-polyiso.R | 41 + polyCub-0.7.0/polyCub/tests/testthat/test-regression.R | 13 37 files changed, 849 insertions(+), 420 deletions(-)
Title: Partial Cointegration
Description: A collection of time series is partially cointegrated if a linear combination of these time series can be found so that the residual spread is partially autoregressive - meaning that it can be represented as a sum of an autoregressive series and a random walk. This concept is useful in modeling certain sets of financial time series and beyond, as it allows for the spread to contain transient and permanent components alike. Partial cointegration has been introduced by Clegg and Krauss (2017) <doi:10.1080/14697688.2017.1370122>, along with a large-scale empirical application to financial market data. The partialCI package comprises estimation, testing, and simulation routines for partial cointegration models in state space. Clegg et al. (2017) <https://hdl.handle.net/10419/150014> provide an in in-depth discussion of the package functionality as well as illustrating examples in the fields of finance and macroeconomics.
Author: Matthew Clegg [aut],
Christopher Krauss [aut],
Jonas Rende [cre, aut]
Maintainer: Jonas Rende <jonas.rende@fau.de>
Diff between partialCI versions 1.1.1 dated 2018-03-06 and 1.2.0 dated 2018-10-11
partialCI-1.1.1/partialCI/R/fit_pci_with_alpha.R |only partialCI-1.1.1/partialCI/R/lrdata.R |only partialCI-1.1.1/partialCI/R/lrtables.R |only partialCI-1.1.1/partialCI/man/which.hypothesis.pcitest.Rd |only partialCI-1.1.1/partialCI/vignettes/figures/MCSDHIST_RSARSB_2006_2016.png |only partialCI-1.1.1/partialCI/vignettes/figures/OLSRES_RSARSB_2006_2016.png |only partialCI-1.2.0/partialCI/DESCRIPTION | 8 partialCI-1.2.0/partialCI/MD5 | 54 partialCI-1.2.0/partialCI/NAMESPACE | 2 partialCI-1.2.0/partialCI/NEWS.md | 7 partialCI-1.2.0/partialCI/R/fit_pci.R | 846 +++---- partialCI-1.2.0/partialCI/R/fit_pci_wo_alpha.R | 17 partialCI-1.2.0/partialCI/R/hedge.R | 772 +++---- partialCI-1.2.0/partialCI/R/lr_pci.R | 1060 ++++------ partialCI-1.2.0/partialCI/R/rand.R | 116 - partialCI-1.2.0/partialCI/R/support.R | 116 - partialCI-1.2.0/partialCI/README.md | 90 partialCI-1.2.0/partialCI/build/vignette.rds |binary partialCI-1.2.0/partialCI/inst/doc/pci_vignette.Rmd | 499 ++-- partialCI-1.2.0/partialCI/inst/doc/pci_vignette.html | 171 - partialCI-1.2.0/partialCI/man/fit.pci.Rd | 322 +-- partialCI-1.2.0/partialCI/man/hedge.pci.Rd | 344 +-- partialCI-1.2.0/partialCI/man/likelihood_ratio.pci.Rd | 168 - partialCI-1.2.0/partialCI/man/loglik.pci.Rd | 230 +- partialCI-1.2.0/partialCI/man/partialCI-package.Rd | 280 +- partialCI-1.2.0/partialCI/man/rpci.Rd | 174 - partialCI-1.2.0/partialCI/man/statehistory.pci.Rd | 128 - partialCI-1.2.0/partialCI/man/test.pci.Rd | 264 +- partialCI-1.2.0/partialCI/vignettes/figures/MCSDHIST_RSARSB_2006_2017.png |only partialCI-1.2.0/partialCI/vignettes/figures/OLSRES_RSARSB_2006_2017.png |only partialCI-1.2.0/partialCI/vignettes/pci_vignette.Rmd | 499 ++-- partialCI-1.2.0/partialCI/vignettes/rende.bib | 105 32 files changed, 3098 insertions(+), 3174 deletions(-)
Title: Dose-Response Data Evaluation
Description: A somewhat outdated package of basic and easy-to-use functions for
fitting dose-response curves to continuous dose-response data, calculating some
toxicological parameters and plotting the results. Please consider using
the more powerful and actively developed 'drc' package. Functions that are
fitted are the cumulative density function of the log-normal distribution
('probit' fit), of the logistic distribution ('logit' fit), of the Weibull
distribution ('weibull' fit) and a linear-logistic model ('linlogit' fit),
derived from the latter, which is used to describe data showing stimulation at
low doses (hormesis). In addition, functions checking, plotting and retrieving
dose-response data retrieved from a database accessed via 'odbc' are included.
As an alternative to the original fitting methods, the algorithms from the 'drc'
package can be used.
Author: Johannes Ranke [aut, cre] (<https://orcid.org/0000-0003-4371-6538>)
Maintainer: Johannes Ranke <jranke@uni-bremen.de>
Diff between drfit versions 0.7.1 dated 2017-07-19 and 0.7.2 dated 2018-10-11
DESCRIPTION | 21 +- MD5 | 35 ++-- NAMESPACE | 5 R/checkcontrols.R | 257 ++++++++++++++++----------------- R/checkexperiment.R | 373 ++++++++++++++++++++++++------------------------- R/checkplate.R | 5 R/checksubstance.R | 188 ++++++++++++------------ R/drdata.R | 80 +++++----- README.md |only man/XY.Rd | 3 man/antifoul.Rd | 3 man/checkcontrols.Rd | 4 man/checkexperiment.Rd | 5 man/checksubstance.Rd | 5 man/drcfit.Rd | 1 man/drdata.Rd | 16 +- man/drfit.Rd | 1 man/drplot.Rd | 3 man/linlogitf.Rd | 1 19 files changed, 501 insertions(+), 505 deletions(-)
Title: Antares Visualizations
Description: Visualize results generated by Antares, a powerful open source software
developed by RTE to simulate and study electric power systems
(more information about Antares here: <https://github.com/AntaresSimulatorTeam/Antares_Simulator>).
This package provides functions that create interactive charts to help
Antares users visually explore the results of their simulations.
You can see the results of several ANTARES studies here : <http://bpnumerique.rte-france.com/>.
Author: Jalal-Edine ZAWAM [aut, cre],
Francois Guillem [aut],
Benoit Thieurmel [aut],
Titouan Robert [aut],
Baptiste SEGUINOT [ctb],
RTE [cph]
Maintainer: Jalal-Edine ZAWAM <jalal-edine.zawam@rte-france.com>
Diff between antaresViz versions 0.14.0 dated 2018-06-12 and 0.15.0 dated 2018-10-11
antaresViz-0.14.0/antaresViz/tests/testthat/test-map.R |only antaresViz-0.14.0/antaresViz/tests/testthat/test-stackExchanges.R |only antaresViz-0.15.0/antaresViz/DESCRIPTION | 25 antaresViz-0.15.0/antaresViz/MD5 | 86 antaresViz-0.15.0/antaresViz/NEWS | 10 antaresViz-0.15.0/antaresViz/R/graph_utils.R | 206 - antaresViz-0.15.0/antaresViz/R/h5_utils.R | 224 - antaresViz-0.15.0/antaresViz/R/map.R | 1987 +++++----- antaresViz-0.15.0/antaresViz/R/map_layout.R | 1255 +++--- antaresViz-0.15.0/antaresViz/R/map_options.R | 276 - antaresViz-0.15.0/antaresViz/R/plot.R | 1732 ++++---- antaresViz-0.15.0/antaresViz/R/plot_XY.R | 98 antaresViz-0.15.0/antaresViz/R/plot_utils.R | 588 ++ antaresViz-0.15.0/antaresViz/R/stack.R | 10 antaresViz-0.15.0/antaresViz/R/stack_exchanges.R | 1059 ++--- antaresViz-0.15.0/antaresViz/R/stack_prod.R | 1492 +++---- antaresViz-0.15.0/antaresViz/R/zzz.R | 530 +- antaresViz-0.15.0/antaresViz/README.md | 2 antaresViz-0.15.0/antaresViz/build/vignette.rds |binary antaresViz-0.15.0/antaresViz/inst/application/server.R | 318 - antaresViz-0.15.0/antaresViz/inst/application/src/server/03_data_selection.R | 313 + antaresViz-0.15.0/antaresViz/inst/application/src/server/05_modules.R | 38 antaresViz-0.15.0/antaresViz/inst/application/src/server/06_module_map.R | 13 antaresViz-0.15.0/antaresViz/inst/application/src/server/08_language.R | 473 +- antaresViz-0.15.0/antaresViz/inst/doc/antaresViz.html | 4 antaresViz-0.15.0/antaresViz/inst/language_labels.csv | 305 - antaresViz-0.15.0/antaresViz/man/exchangesStack.Rd | 49 antaresViz-0.15.0/antaresViz/man/mapLayout.Rd | 4 antaresViz-0.15.0/antaresViz/man/plot.mapLayout.Rd | 8 antaresViz-0.15.0/antaresViz/man/plotMap.Rd | 45 antaresViz-0.15.0/antaresViz/man/plotMapOptions.Rd | 68 antaresViz-0.15.0/antaresViz/man/plotXY.Rd | 4 antaresViz-0.15.0/antaresViz/man/prodStack.Rd | 43 antaresViz-0.15.0/antaresViz/man/savePlotAsPng.Rd | 3 antaresViz-0.15.0/antaresViz/man/tsLegend.Rd | 4 antaresViz-0.15.0/antaresViz/man/tsPlot.Rd | 94 antaresViz-0.15.0/antaresViz/tests/testthat/helper-init.R | 29 antaresViz-0.15.0/antaresViz/tests/testthat/test-exchangesStack.R | 974 ++++ antaresViz-0.15.0/antaresViz/tests/testthat/test-graphUtils.R | 2 antaresViz-0.15.0/antaresViz/tests/testthat/test-h5Request.R | 6 antaresViz-0.15.0/antaresViz/tests/testthat/test-plotMap.R |only antaresViz-0.15.0/antaresViz/tests/testthat/test-plotThermalGroupCapacities.R | 20 antaresViz-0.15.0/antaresViz/tests/testthat/test-plotXY.R | 6 antaresViz-0.15.0/antaresViz/tests/testthat/test-prodStack.R | 760 +++ antaresViz-0.15.0/antaresViz/tests/testthat/test-ts_plot.R | 826 ++++ antaresViz-0.15.0/antaresViz/tests/testthat/test-zzCleanTests.R |only 46 files changed, 8760 insertions(+), 5229 deletions(-)
Title: Easily Carry Out Latent Profile Analysis (LPA) Using Open-Source
or Commercial Software
Description: An interface to the 'mclust' package to easily carry out latent profile
analysis ("LPA"). Provides functionality to estimate commonly-specified models.
Follows a tidy approach, in that output is in the form of a data frame that can
subsequently be computed on. Also has functions to interface to the commercial
'MPlus' software via the 'MplusAutomation' package.
Author: Joshua M Rosenberg [aut, cre],
Jennifer A Schmidt [ctb],
Patrick N Beymer [ctb],
Daniel Anderson [ctb],
Caspar van Lissa [ctb]
Maintainer: Joshua M Rosenberg <jmichaelrosenberg@gmail.com>
Diff between tidyLPA versions 0.2.0 dated 2018-09-13 and 0.2.1 dated 2018-10-11
tidyLPA-0.2.0/tidyLPA/R/bootstrap_LRT.R |only tidyLPA-0.2.0/tidyLPA/R/compare_solutions.R |only tidyLPA-0.2.0/tidyLPA/R/compare_solutions_mplus.R |only tidyLPA-0.2.0/tidyLPA/R/detect-outliers.R |only tidyLPA-0.2.0/tidyLPA/R/estimate_profiles.R |only tidyLPA-0.2.0/tidyLPA/R/estimate_profiles_mplus.R |only tidyLPA-0.2.0/tidyLPA/R/plot_profiles.R |only tidyLPA-0.2.0/tidyLPA/R/plot_profiles_mplus.R |only tidyLPA-0.2.0/tidyLPA/tests/testthat/test-compare_solutions.R |only tidyLPA-0.2.0/tidyLPA/tests/testthat/test-compare_solutions_mplus.R |only tidyLPA-0.2.0/tidyLPA/tests/testthat/test-estimate_profiles.R |only tidyLPA-0.2.0/tidyLPA/tests/testthat/test-estimate_profiles_mplus.R |only tidyLPA-0.2.0/tidyLPA/tests/testthat/test-plot_profiles.R |only tidyLPA-0.2.0/tidyLPA/tests/testthat/test-plot_profiles_mplus.R |only tidyLPA-0.2.1/tidyLPA/DESCRIPTION | 9 - tidyLPA-0.2.1/tidyLPA/MD5 | 62 +++---- tidyLPA-0.2.1/tidyLPA/NAMESPACE | 2 tidyLPA-0.2.1/tidyLPA/R/bootstrap-LRT.R |only tidyLPA-0.2.1/tidyLPA/R/compare-solutions-mplus.R |only tidyLPA-0.2.1/tidyLPA/R/compare-solutions.R |only tidyLPA-0.2.1/tidyLPA/R/data-documentation.R |only tidyLPA-0.2.1/tidyLPA/R/estimate-profiles-mplus.R |only tidyLPA-0.2.1/tidyLPA/R/estimate-profiles.R |only tidyLPA-0.2.1/tidyLPA/R/helpers.R | 83 +++++----- tidyLPA-0.2.1/tidyLPA/R/mplusavailable.R |only tidyLPA-0.2.1/tidyLPA/R/plot-profiles-mplus.R |only tidyLPA-0.2.1/tidyLPA/R/plot-profiles.R |only tidyLPA-0.2.1/tidyLPA/R/tidylpa.r | 2 tidyLPA-0.2.1/tidyLPA/README.md | 25 ++- tidyLPA-0.2.1/tidyLPA/inst/doc/Introduction_to_tidyLPA.Rmd | 16 + tidyLPA-0.2.1/tidyLPA/inst/doc/Introduction_to_tidyLPA.html | 34 ++-- tidyLPA-0.2.1/tidyLPA/man/bootstrap_lrt.Rd | 4 tidyLPA-0.2.1/tidyLPA/man/compare_solutions.Rd | 2 tidyLPA-0.2.1/tidyLPA/man/compare_solutions_mplus.Rd | 15 + tidyLPA-0.2.1/tidyLPA/man/estimate_profiles.Rd | 4 tidyLPA-0.2.1/tidyLPA/man/estimate_profiles_mplus.Rd | 2 tidyLPA-0.2.1/tidyLPA/man/mplusAvailable.Rd |only tidyLPA-0.2.1/tidyLPA/man/pisaUSA15.Rd | 2 tidyLPA-0.2.1/tidyLPA/man/plot_profiles.Rd | 7 tidyLPA-0.2.1/tidyLPA/man/plot_profiles_mplus.Rd | 12 + tidyLPA-0.2.1/tidyLPA/tests/testthat/test-compare-solutions-mplus.R |only tidyLPA-0.2.1/tidyLPA/tests/testthat/test-compare-solutions.R |only tidyLPA-0.2.1/tidyLPA/tests/testthat/test-estimate-profiles-mplus.R |only tidyLPA-0.2.1/tidyLPA/tests/testthat/test-estimate-profiles.R |only tidyLPA-0.2.1/tidyLPA/tests/testthat/test-plot-profiles-mplus.R |only tidyLPA-0.2.1/tidyLPA/tests/testthat/test-plot-profiles.R |only tidyLPA-0.2.1/tidyLPA/vignettes/Introduction_to_tidyLPA.Rmd | 16 + 47 files changed, 174 insertions(+), 123 deletions(-)
Title: Multicriteria Package
Description: Provides a methodology to solve most of multicriteria ranking problems using partial and total pre-order from Promethee methods. Albuquerque & Montenegro (2015) <doi:10.1080/03610926.2014.942432>.
Author: Pedro Albuquerque and Gustavo Monteiro
Maintainer: Pedro Albuquerque <pedroa@unb.br>
Diff between RMCriteria versions 0.1.0 dated 2018-04-13 and 0.1.1 dated 2018-10-11
DESCRIPTION | 6 - MD5 | 18 ++-- NAMESPACE | 1 R/PrometheeS4.R | 70 ++++++++++++++---- R/RcppExports.R | 36 +++++++++ R/integrais_r.R |only R/integrais_r_old.R |only man/RPrometheeIVKernel-class.Rd | 2 man/RPrometheeIVKernel.Rd | 1 src/RcppExports.cpp | 148 ++++++++++++++++++++++++++++++++++++++++ src/integral.cpp |only src/kernel.cpp |only 12 files changed, 254 insertions(+), 28 deletions(-)
Title: Access iTunes App Store Ratings and Reviews using R
Description: To enable 'iOS' App Developers to access iTunes App Store Ratings and Reviews using R to extract Basic App Information and Reviews submitted by their App users, Since Apple Store does not provide this straightforward.
Author: AbdulMajedRaja RS [aut, cre]
Maintainer: AbdulMajedRaja RS <amrrs.data@gmail.com>
Diff between itunesr versions 0.1.2 dated 2018-09-14 and 0.1.3 dated 2018-10-11
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- NAMESPACE | 2 -- R/iTunesR.R | 7 +------ man/getAttributes.Rd | 3 --- man/getLogo.Rd | 3 --- 6 files changed, 9 insertions(+), 22 deletions(-)
Title: Downloads and Organizes Financial Data for Multiple Tickers
Description: Makes it easy to download a large number of trade data from Yahoo or Google Finance.
Author: Marcelo Perlin [aut, cre]
Maintainer: Marcelo Perlin <marceloperlin@gmail.com>
Diff between BatchGetSymbols versions 2.1 dated 2018-05-08 and 2.2 dated 2018-10-11
DESCRIPTION | 14 ++++---- MD5 | 22 ++++++------- NAMESPACE | 1 NEWS.md | 4 ++ R/BatchGetSymbols.R | 53 +++++++++++++++++++++++++++++---- build/vignette.rds |binary inst/doc/BatchGetSymbols-vignette.R | 3 + inst/doc/BatchGetSymbols-vignette.Rmd | 4 +- inst/doc/BatchGetSymbols-vignette.html | 27 +++++++++++----- man/BatchGetSymbols.Rd | 7 +++- man/myGetSymbols.Rd | 4 +- vignettes/BatchGetSymbols-vignette.Rmd | 4 +- 12 files changed, 104 insertions(+), 39 deletions(-)
More information about BatchGetSymbols at CRAN
Permanent link
Title: Quantifying Performance of a Binary Classifier Through Weight of
Evidence
Description: The distributions of the weight of evidence (log Bayes factor) favouring case over noncase status in a test dataset (or test folds generated by cross-validation) can be used to quantify the performance of a diagnostic test (McKeigue (2018), <doi:10.1177/0962280218776989>). The package can be used with any test dataset on which you have observed case-control status and have computed prior and posterior probabilities of case status using a model learned on a training dataset. To quantify how the predictor will behave as a risk stratifier, the quantiles of the distributions of weight of evidence in cases and controls can be calculated and plotted.
Author: Paul McKeigue [aut] (<https://orcid.org/0000-0002-5217-1034>),
Marco Colombo [ctb, cre] (<https://orcid.org/0000-0001-6672-0623>)
Maintainer: Marco Colombo <m.colombo@ed.ac.uk>
Diff between wevid versions 0.4.2 dated 2018-06-15 and 0.5.1 dated 2018-10-11
DESCRIPTION | 23 ++++--- MD5 | 32 +++++------ NAMESPACE | 4 + R/data.R | 15 +++-- R/plots.R | 10 +-- R/wdists.R | 130 +++++++++++++++++++++++++++++++-------------- R/wevid.R | 7 +- inst |only man/Wdensities.Rd | 15 +++-- man/plotWdists.Rd | 4 - man/plotcumfreqs.Rd | 2 man/plotroc.Rd | 2 man/prop.belowthreshold.Rd | 2 man/recalibrate.p.Rd |only man/summary-densities.Rd | 24 +++++--- man/weightsofevidence.Rd | 2 man/wevid-package.Rd | 7 +- man/wevid.datasets.Rd | 2 18 files changed, 181 insertions(+), 100 deletions(-)
Title: Select from a Set of Strings
Description: A backend for the selecting functions of the 'tidyverse'.
It makes it easy to implement select-like functions in your own
packages in a way that is consistent with other 'tidyverse'
interfaces for selection.
Author: Lionel Henry [aut, cre],
Hadley Wickham [aut],
RStudio [cph]
Maintainer: Lionel Henry <lionel@rstudio.com>
Diff between tidyselect versions 0.2.4 dated 2018-02-26 and 0.2.5 dated 2018-10-11
DESCRIPTION | 10 ++++----- MD5 | 24 +++++++++++----------- NEWS.md | 9 ++++++-- R/select-helpers.R | 18 ++++++++--------- R/tidyselect.R | 12 +++++++++++ R/utils-errors.R | 2 - R/vars-select.R | 40 +++++++++++++++++++++++--------------- R/vars.R | 11 ---------- man/reexports.Rd | 3 -- man/select_helpers.Rd | 18 ++++++++--------- man/tidyselect-package.Rd | 6 ++--- tests/testthat/test-vars-select.R | 9 +++++++- tests/testthat/test-vars.R | 12 ++++++++--- 13 files changed, 101 insertions(+), 73 deletions(-)
Title: Bayesian Random-Effects Meta-Analysis
Description: A collection of functions allowing to derive the posterior distribution of the two parameters in a random-effects meta-analysis, and providing functionality to evaluate joint and marginal posterior probability distributions, predictive distributions, shrinkage effects, posterior predictive p-values, etc.
Author: Christian Roever [aut, cre] (<https://orcid.org/0000-0002-6911-698X>),
Tim Friede [ctb] (<https://orcid.org/0000-0001-5347-7441>)
Maintainer: Christian Roever <christian.roever@med.uni-goettingen.de>
Diff between bayesmeta versions 2.2 dated 2018-04-12 and 2.3 dated 2018-10-11
bayesmeta-2.2/bayesmeta/data/Cochran1954.rda |only bayesmeta-2.2/bayesmeta/data/CrinsEtAl2014.rda |only bayesmeta-2.2/bayesmeta/data/GoralczykEtAl2011.rda |only bayesmeta-2.2/bayesmeta/data/HinksEtAl2010.rda |only bayesmeta-2.2/bayesmeta/data/Peto1980.rda |only bayesmeta-2.2/bayesmeta/data/Rubin1981.rda |only bayesmeta-2.2/bayesmeta/data/SidikJonkman2007.rda |only bayesmeta-2.2/bayesmeta/data/SnedecorCochran.rda |only bayesmeta-2.2/bayesmeta/inst/doc/Roever2017-bayesmeta.pdf |only bayesmeta-2.2/bayesmeta/inst/doc/Roever2017-bayesmeta.pdf.asis |only bayesmeta-2.2/bayesmeta/vignettes/Roever2017-bayesmeta.pdf.asis |only bayesmeta-2.3/bayesmeta/DESCRIPTION | 22 ++--- bayesmeta-2.3/bayesmeta/MD5 | 42 +++++----- bayesmeta-2.3/bayesmeta/R/bayesmeta.R | 37 ++++++++ bayesmeta-2.3/bayesmeta/build/vignette.rds |binary bayesmeta-2.3/bayesmeta/data/Cochran1954.R |only bayesmeta-2.3/bayesmeta/data/CrinsEtAl2014.R |only bayesmeta-2.3/bayesmeta/data/GoralczykEtAl2011.R |only bayesmeta-2.3/bayesmeta/data/HinksEtAl2010.R |only bayesmeta-2.3/bayesmeta/data/Peto1980.R |only bayesmeta-2.3/bayesmeta/data/Rubin1981.R |only bayesmeta-2.3/bayesmeta/data/SidikJonkman2007.R |only bayesmeta-2.3/bayesmeta/data/SnedecorCochran.R |only bayesmeta-2.3/bayesmeta/inst/doc/Roever2018-bayesmeta.pdf |only bayesmeta-2.3/bayesmeta/inst/doc/Roever2018-bayesmeta.pdf.asis |only bayesmeta-2.3/bayesmeta/inst/doc/bayesmeta.html | 8 - bayesmeta-2.3/bayesmeta/man/Cochran1954.Rd | 3 bayesmeta-2.3/bayesmeta/man/CrinsEtAl2014.Rd | 2 bayesmeta-2.3/bayesmeta/man/Rubin1981.Rd | 3 bayesmeta-2.3/bayesmeta/man/bayesmeta-package.Rd | 4 bayesmeta-2.3/bayesmeta/man/bayesmeta.Rd | 25 +++++ bayesmeta-2.3/bayesmeta/man/dhalfnormal.Rd | 4 bayesmeta-2.3/bayesmeta/vignettes/Roever2018-bayesmeta.pdf.asis |only 33 files changed, 108 insertions(+), 42 deletions(-)
Title: Genomic Regression Workbench
Description: Workbench for testing genomic regression accuracy on (optionally noisy) phenotypes.
Author: Nelson Nazzicari & Filippo Biscarini
Maintainer: Nelson Nazzicari <nelson.nazzicari@gmail.com>
Diff between GROAN versions 1.1.0 dated 2017-10-07 and 1.2.0 dated 2018-10-11
DESCRIPTION | 12 ++-- MD5 | 60 ++++++++++----------- NEWS | 6 ++ R/common.R | 2 R/data_docs.R | 4 - R/noisy_dataset.R | 4 - R/plot.R | 21 ++++++- R/regressors.R | 107 ++++++++++++++++++++++---------------- R/run.R | 25 ++++++++ R/workbench.R | 2 build/partial.rdb |binary build/vignette.rds |binary inst/doc/GROAN.vignette.html | 86 +++++++++++++++--------------- man/GROAN.AI.Rd | 2 man/GROAN.KI.Rd | 2 man/createNoisyDataset.Rd | 6 +- man/createWorkbench.Rd | 6 +- man/is.boolean.Rd | 2 man/noiseInjector.dummy.Rd | 1 man/noiseInjector.norm.Rd | 1 man/noiseInjector.swapper.Rd | 1 man/noiseInjector.unif.Rd | 1 man/phenoRegressor.BGLR.Rd | 4 + man/phenoRegressor.RFR.Rd | 1 man/phenoRegressor.SVR.Rd | 3 - man/phenoRegressor.dummy.Rd | 1 man/phenoRegressor.rrBLUP.G.Rd | 8 +- man/phenoRegressor.rrBLUP.Rd | 56 +++++++++++++------ man/phenoRegressor.rrBLUP.SNP.Rd | 7 +- man/plotResult.Rd | 9 ++- man/summary.GROAN.NoisyDataset.Rd | 2 31 files changed, 268 insertions(+), 174 deletions(-)
Title: The FisherEM Algorithm to Simultaneously Cluster and Visualize
High-Dimensional Data
Description: The FisherEM algorithm, proposed by Bouveyron & Brunet (201) <doi:10.1007/s11222-011-9249-9>,
is an efficient method for the clustering of high-dimensional data. FisherEM models and
clusters the data in a discriminative and low-dimensional latent subspace. It also provides
a low-dimensional representation of the clustered data. A sparse version of Fisher-EM
algorithm is also provided.
Author: Charles Bouveyron and Camille Brunet
Maintainer: Charles Bouveyron <charles.bouveyron@gmail.com>
Diff between FisherEM versions 1.5 dated 2018-10-09 and 1.5.1 dated 2018-10-11
FisherEM-1.5.1/FisherEM/DESCRIPTION | 20 +++--- FisherEM-1.5.1/FisherEM/MD5 | 17 ++--- FisherEM-1.5.1/FisherEM/R/fem.R | 80 ++++++++++++------------ FisherEM-1.5.1/FisherEM/R/plot.fem.R | 15 ++-- FisherEM-1.5.1/FisherEM/R/print.fem.R | 16 +++- FisherEM-1.5.1/FisherEM/R/sfem.R | 69 +++++++++++--------- FisherEM-1.5.1/FisherEM/man/FisherEM-package.Rd | 7 -- FisherEM-1.5.1/FisherEM/man/fem.Rd | 6 + FisherEM-1.5.1/FisherEM/man/sfem.Rd | 4 - FisherEM-1.5/FisherEM/R/fem.sh.R |only 10 files changed, 125 insertions(+), 109 deletions(-)
Title: A Toolkit for Using Whole Building Simulation Program
'EnergyPlus'
Description: A rich toolkit of using the whole building simulation program
'EnergyPlus'(<https://energyplus.net>), which enables programmatic
navigation, modification of 'EnergyPlus' models and makes it less painful to
do parametric simulations and analysis.
Author: Hongyuan Jia [aut, cre] (<https://orcid.org/0000-0002-0075-8183>)
Maintainer: Hongyuan Jia <hongyuanjia@cqu.edu.cn>
Diff between eplusr versions 0.9.2 dated 2018-09-30 and 0.9.3 dated 2018-10-11
DESCRIPTION | 6 +++--- MD5 | 18 +++++++++--------- NEWS.md | 10 ++++++++++ R/constants.R | 8 +++++--- R/impl.R | 4 ++-- inst/doc/eplusr.R | 2 +- inst/doc/eplusr.Rmd | 2 +- inst/doc/eplusr.html | 35 +++++++++++++++++------------------ tests/testthat/test_idd.R | 2 +- vignettes/eplusr.Rmd | 2 +- 10 files changed, 50 insertions(+), 39 deletions(-)
Title: Command-Line Interface Specification Language
Description: Define a command-line interface by just giving it
a description in the specific format.
Author: Edwin de Jonge (edwindjonge@gmail.com)
Maintainer: Edwin de Jonge <edwindjonge@gmail.com>
Diff between docopt versions 0.6 dated 2018-08-03 and 0.6.1 dated 2018-10-11
docopt-0.6.1/docopt/DESCRIPTION | 9 +++++---- docopt-0.6.1/docopt/MD5 | 6 ++---- docopt-0.6.1/docopt/NEWS | 4 ++++ docopt-0.6/docopt/README.md |only docopt-0.6/docopt/inst/spec/README.md |only 5 files changed, 11 insertions(+), 8 deletions(-)
Title: Create Tidy Data Frames of Marginal Effects for 'ggplot' from
Model Outputs
Description: Compute marginal effects from statistical models and returns the
result as tidy data frames. These data frames are ready to use with the
'ggplot2'-package. Marginal effects can be calculated for many different
models. Interaction terms, splines and polynomial terms are also supported.
The two main functions are ggpredict() and ggeffect(). There is a generic
plot()-method to plot the results using 'ggplot2'.
Author: Daniel Lüdecke [aut, cre] (<https://orcid.org/0000-0002-8895-3206>)
Maintainer: Daniel Lüdecke <d.luedecke@uke.de>
Diff between ggeffects versions 0.5.0 dated 2018-08-11 and 0.6.0 dated 2018-10-11
ggeffects-0.5.0/ggeffects/R/summary.R |only ggeffects-0.6.0/ggeffects/DESCRIPTION | 33 ggeffects-0.6.0/ggeffects/MD5 | 102 - ggeffects-0.6.0/ggeffects/NAMESPACE | 25 ggeffects-0.6.0/ggeffects/NEWS.md | 24 ggeffects-0.6.0/ggeffects/R/emm.R | 11 ggeffects-0.6.0/ggeffects/R/getter.R | 2 ggeffects-0.6.0/ggeffects/R/ggaverage.R | 35 ggeffects-0.6.0/ggeffects/R/ggeffect.R | 28 ggeffects-0.6.0/ggeffects/R/ggpredict.R | 266 ++- ggeffects-0.6.0/ggeffects/R/plot.R | 119 + ggeffects-0.6.0/ggeffects/R/predictions.R | 674 +++++++- ggeffects-0.6.0/ggeffects/R/print.R |only ggeffects-0.6.0/ggeffects/R/select_helpers.R |only ggeffects-0.6.0/ggeffects/R/utils.R | 58 ggeffects-0.6.0/ggeffects/R/utils_expand_data_to_grid.R | 41 ggeffects-0.6.0/ggeffects/R/utils_handle_labels.R | 348 ++-- ggeffects-0.6.0/ggeffects/R/utils_link_inverse.R | 63 ggeffects-0.6.0/ggeffects/R/utils_model_function.R | 4 ggeffects-0.6.0/ggeffects/R/utils_parse_vars_arguments.R | 12 ggeffects-0.6.0/ggeffects/R/utils_set_attr.R | 63 ggeffects-0.6.0/ggeffects/README.md | 70 ggeffects-0.6.0/ggeffects/inst/doc/effectsatvalues.R | 2 ggeffects-0.6.0/ggeffects/inst/doc/effectsatvalues.Rmd | 2 ggeffects-0.6.0/ggeffects/inst/doc/effectsatvalues.html | 576 +++++-- ggeffects-0.6.0/ggeffects/inst/doc/marginaleffects.R | 17 ggeffects-0.6.0/ggeffects/inst/doc/marginaleffects.Rmd | 26 ggeffects-0.6.0/ggeffects/inst/doc/marginaleffects.html | 773 +++++++--- ggeffects-0.6.0/ggeffects/inst/doc/plotmethod.R | 31 ggeffects-0.6.0/ggeffects/inst/doc/plotmethod.Rmd | 45 ggeffects-0.6.0/ggeffects/inst/doc/plotmethod.html | 420 ++++- ggeffects-0.6.0/ggeffects/inst/doc/stata.html | 501 ++++-- ggeffects-0.6.0/ggeffects/man/emm.Rd | 59 ggeffects-0.6.0/ggeffects/man/get_title.Rd | 2 ggeffects-0.6.0/ggeffects/man/ggpredict.Rd | 161 +- ggeffects-0.6.0/ggeffects/man/plot.Rd | 11 ggeffects-0.6.0/ggeffects/tests/testthat.R | 6 ggeffects-0.6.0/ggeffects/tests/testthat/test-args.R |only ggeffects-0.6.0/ggeffects/tests/testthat/test-clean_vars.R |only ggeffects-0.6.0/ggeffects/tests/testthat/test-get_titles.R | 68 ggeffects-0.6.0/ggeffects/tests/testthat/test-glm.R | 82 - ggeffects-0.6.0/ggeffects/tests/testthat/test-glmer.R | 94 - ggeffects-0.6.0/ggeffects/tests/testthat/test-glmmTMB.R | 38 ggeffects-0.6.0/ggeffects/tests/testthat/test-linear-models.R | 243 +-- ggeffects-0.6.0/ggeffects/tests/testthat/test-lmer.R | 70 ggeffects-0.6.0/ggeffects/tests/testthat/test-nlme.R | 85 - ggeffects-0.6.0/ggeffects/tests/testthat/test-plot.R |only ggeffects-0.6.0/ggeffects/tests/testthat/test-poisson.R | 46 ggeffects-0.6.0/ggeffects/tests/testthat/test-polr.R | 92 - ggeffects-0.6.0/ggeffects/tests/testthat/test-rstanarm.R |only ggeffects-0.6.0/ggeffects/tests/testthat/test-survey.R | 85 - ggeffects-0.6.0/ggeffects/tests/testthat/test-svyglmnb.R | 70 ggeffects-0.6.0/ggeffects/tests/testthat/test-zeroinfl.R |only ggeffects-0.6.0/ggeffects/vignettes/effectsatvalues.Rmd | 2 ggeffects-0.6.0/ggeffects/vignettes/marginaleffects.Rmd | 26 ggeffects-0.6.0/ggeffects/vignettes/plotmethod.Rmd | 45 56 files changed, 3991 insertions(+), 1665 deletions(-)
Title: Spatial Covariance Functions
Description: R functions for analyzing spatial (cross-)covariance: the
nonparametric (cross-)covariance function, the spline correlogram, the
nonparametric phase coherence function, local indicators of spatial
association (LISA), (Mantel) correlogram, (Partial) Mantel test.
Author: Ottar N. Bjornstad [aut, cre],
Jun Cai [ctb]
Maintainer: Ottar N. Bjornstad <onb1@psu.edu>
Diff between ncf versions 1.2-5 dated 2018-05-24 and 1.2-6 dated 2018-10-11
CHANGES | 10 ++++++++-- DESCRIPTION | 10 +++++----- MD5 | 10 +++++----- R/correlog.R | 4 ++-- R/mSynch.R | 2 +- man/correlog.nc.Rd | 4 ++-- 6 files changed, 23 insertions(+), 17 deletions(-)
Title: Simulation of Ecological Models
Description: Computer simulations of classical ecological models as a
learning resource.
Author: Alexandre Adalardo de Oliveira and Paulo Inacio Prado
<ecovirtualpackage@gmail.com>
Maintainer: Alexandre Adalardo de Oliveira <ecovirtualpackage@gmail.com>
Diff between EcoVirtual versions 1.0 dated 2016-06-29 and 1.1 dated 2018-10-11
DESCRIPTION | 8 +++---- MD5 | 6 ++--- R/bioGeo.R | 61 ++++++++++++++++++++++++++++++++++++++---------------------- R/dynPop.R | 13 ++++++++++-- 4 files changed, 57 insertions(+), 31 deletions(-)
Title: 'caret' Applications for Spatial-Temporal Models
Description: Supporting functionality to run 'caret' with spatial or spatial-temporal data. 'caret' is a frequently used package for model training and prediction using machine learning. This package includes functions to improve spatial-temporal modelling tasks using 'caret'. It prepares data for Leave-Location-Out and Leave-Time-Out cross-validation which are target-oriented validation strategies for spatial-temporal models. To decrease overfitting and improve model performances, the package implements a forward feature selection that selects suitable predictor variables in view to their contribution to the target-oriented performance.
Author: Hanna Meyer [cre, aut],
Chris Reudenbach [ctb],
Marvin Ludwig [ctb],
Thomas Nauss [ctb]
Maintainer: Hanna Meyer <hanna.meyer@geo.uni-marburg.de>
Diff between CAST versions 0.2.1 dated 2018-07-12 and 0.3.0 dated 2018-10-11
DESCRIPTION | 8 +++--- MD5 | 24 ++++++++++--------- NAMESPACE | 1 NEWS.md | 8 ++++++ R/bss.R |only R/ffs.R | 57 +++++++++++++++++++++++++++++++++++++---------- R/plot_ffs.R | 16 ++++++++++--- inst/doc/CAST-intro.R | 3 -- inst/doc/CAST-intro.Rmd | 3 -- inst/doc/CAST-intro.html | 13 ++++------ man/bss.Rd |only man/ffs.Rd | 7 ++--- man/plot_ffs.Rd | 9 ++++--- vignettes/CAST-intro.Rmd | 3 -- 14 files changed, 102 insertions(+), 50 deletions(-)