Title: Model-Assisted Survey Estimators
Description: A set of model-assisted survey estimators and corresponding
variance estimators for single stage, unequal probability, without replacement
sampling designs. All of the estimators can be written as a generalized
regression estimator with the Horvitz-Thompson, ratio, post-stratified, and
regression estimators summarized by Sarndal et al. (1992, ISBN:978-0-387-40620-6).
Two of the estimators employ a statistical learning model as the assisting model:
the elastic net regression estimator, which is an extension of the lasso regression
estimator given by McConville et al. (2017) <doi:10.1093/jssam/smw041>, and the
regression tree estimator described in McConville and Toth (2017) <arXiv:1712.05708>.
The variance estimators which approximate the joint inclusion probabilities can
be found in Berger and Tille (2009) <doi:10.1016/S0169-7161(08)00002-3> and the
bootstrap variance estimator is presented in Mashreghi et al. (2016)
<doi:10.1214/16-SS113>.
Author: Kelly McConville [aut, cre, cph],
Becky Tang [aut],
George Zhu [aut],
Sida Li [ctb],
Shirley Chueng [ctb],
Daniell Toth [ctb, cph] (Author and copyright holder of
treeDesignMatrix helper function)
Maintainer: Kelly McConville <mcconville@reed.edu>
Diff between mase versions 0.1.1 dated 2018-06-14 and 0.1.2 dated 2018-10-12
DESCRIPTION | 15 ++++++++------- MD5 | 20 ++++++++++---------- R/gregTree.R | 5 +++-- build/partial.rdb |binary inst/CITATION | 10 +++++----- inst/REFERENCES.bib | 8 ++++---- man/greg.Rd | 5 +++-- man/gregElasticNet.Rd | 8 ++++---- man/gregTree.Rd | 4 ++-- man/horvitzThompson.Rd | 4 ++-- man/ratioEstimator.Rd | 6 +++--- 11 files changed, 44 insertions(+), 41 deletions(-)
Title: Bayesian Optimal INterval (BOIN) Design for Single-Agent and
Drug- Combination Phase I Clinical Trials
Description: The Bayesian optimal interval (BOIN) design is a novel phase I
clinical trial design for finding the maximum tolerated dose (MTD). It can be
used to design both single-agent and drug-combination trials. The BOIN design
is motivated by the top priority and concern of clinicians when testing a new
drug, which is to effectively treat patients and minimize the chance of exposing
them to subtherapeutic or overly toxic doses. The prominent advantage of the
BOIN design is that it achieves simplicity and superior performance at the same
time. The BOIN design is algorithm-based and can be implemented in a simple
way similar to the traditional 3+3 design. The BOIN design yields an average
performance that is comparable to that of the continual reassessment method
(CRM, one of the best model-based designs) in terms of selecting the MTD, but
has a substantially lower risk of assigning patients to subtherapeutic or overly
toxic doses.
Author: Ying Yuan and Suyu Liu
Maintainer: Ying Yuan <yyuan@mdanderson.org>
Diff between BOIN versions 2.6.3 dated 2018-04-10 and 2.6.4 dated 2018-10-12
DESCRIPTION | 8 ++-- MD5 | 8 ++-- R/BOIN.R | 2 - R/get.oc.comb.R | 94 +++++++++++++++++++++++++++++++++++++++++++++++++++- R/select.mtd.comb.R | 4 +- 5 files changed, 104 insertions(+), 12 deletions(-)
Title: Nonlinear Time Series Analysis
Description: R functions for (non)linear time series analysis with an emphasis on nonparametric autoregression and order estimation, and tests for linearity / additivity.
Author: Ottar N. Bjornstad [aut, cre]
Maintainer: Ottar N. Bjornstad <onb1@psu.edu>
Diff between nlts versions 0.2-2 dated 2017-08-28 and 1.0-2 dated 2018-10-12
nlts-0.2-2/nlts/TODO |only nlts-1.0-2/nlts/CHANGES | 92 nlts-1.0-2/nlts/DESCRIPTION | 21 nlts-1.0-2/nlts/MD5 | 60 nlts-1.0-2/nlts/NAMESPACE | 67 nlts-1.0-2/nlts/R/data.R |only nlts-1.0-2/nlts/R/nlts.R | 2062 ++++++++++++-------- nlts-1.0-2/nlts/man/add.test.Rd | 106 - nlts-1.0-2/nlts/man/contingency.periodogram.Rd | 102 nlts-1.0-2/nlts/man/lin.order.cls.Rd | 114 - nlts-1.0-2/nlts/man/lin.test.Rd | 94 nlts-1.0-2/nlts/man/ll.edm.Rd | 119 - nlts-1.0-2/nlts/man/ll.order.Rd | 208 -- nlts-1.0-2/nlts/man/lpx.Rd | 65 nlts-1.0-2/nlts/man/mkx.Rd | 61 nlts-1.0-2/nlts/man/plodia.Rd | 42 nlts-1.0-2/nlts/man/plot.contingency.periodogram.Rd | 51 nlts-1.0-2/nlts/man/plot.lin.order.Rd | 49 nlts-1.0-2/nlts/man/plot.ll.order.Rd | 58 nlts-1.0-2/nlts/man/plot.lomb.Rd | 51 nlts-1.0-2/nlts/man/plot.ppll.Rd | 59 nlts-1.0-2/nlts/man/plot.specar.ci.Rd | 52 nlts-1.0-2/nlts/man/portman.Q.Rd | 86 nlts-1.0-2/nlts/man/predict.ll.order.Rd | 59 nlts-1.0-2/nlts/man/prediction.profile.ll.Rd | 130 - nlts-1.0-2/nlts/man/print.ll.order.Rd | 65 nlts-1.0-2/nlts/man/spec.lomb.Rd | 132 - nlts-1.0-2/nlts/man/specar.ci.Rd | 135 - nlts-1.0-2/nlts/man/summary.lin.order.Rd | 49 nlts-1.0-2/nlts/man/summary.ll.order.Rd | 65 nlts-1.0-2/nlts/man/summary.lomb.Rd | 52 nlts-1.0-2/nlts/man/summary.specar.ci.Rd | 57 32 files changed, 2334 insertions(+), 2029 deletions(-)
Title: Compute Krippendorff's Alpha
Description: Provides functions to compute and plot Krippendorff's inter-coder
reliability coefficient alpha and bootstrapped uncertainty estimates
(Krippendorff 2004, ISBN:0761915443). The bootstrap routines are set up to
make use of parallel threads where supported.
Author: Alexander Staudt [aut, cre], Pierre L'Ecuyer [ctb] (author of the C++ RNG code)
Maintainer: Alexander Staudt <staudtlex@live.de>
Diff between icr versions 0.5.6 dated 2018-07-24 and 0.5.7 dated 2018-10-12
DESCRIPTION | 10 +-- MD5 | 19 ++++--- NAMESPACE | 24 ++++----- R/plot_icr.R | 4 - configure | 14 ----- man/codings.Rd | 40 +++++++-------- man/figures |only man/krippalpha.Rd | 143 +++++++++++++++++++++++++++--------------------------- src/Makevars.in | 2 src/Makevars.win | 2 10 files changed, 125 insertions(+), 133 deletions(-)
Title: Manage Competition Results
Description: Tools for storing and managing competition results. Competition is
understood as a set of games in which players gain some abstract scores.
There are two ways for storing results: in long (one row per game-player)
and wide (one row per game with fixed amount of players) formats. This
package provides functions for creation and conversion between them. Also
there are functions for computing their summary and Head-to-Head values for
players. They leverage grammar of data manipulation from 'dplyr'.
Author: Evgeni Chasnovski [aut, cre]
Maintainer: Evgeni Chasnovski <evgeni.chasnovski@gmail.com>
Diff between comperes versions 0.2.0 dated 2018-05-11 and 0.2.1 dated 2018-10-12
DESCRIPTION | 8 - MD5 | 46 +++---- NEWS.md | 12 ++ R/head-to-head.R | 8 - R/item-summary.R | 4 R/results-longcr.R | 2 R/results-widecr.R | 26 ++-- R/utils.R | 5 README.md | 90 ++++++++------- inst/doc/formats.html | 50 ++++---- inst/doc/manipulation.R | 6 - inst/doc/manipulation.Rmd | 6 - inst/doc/manipulation.html | 205 +++++++++++++++++++---------------- man/h2h_funs.Rd | 4 man/h2h_long.Rd | 1 man/h2h_mat.Rd | 1 man/item-summary-join.Rd | 3 man/reexports.Rd | 1 man/summary_funs.Rd | 8 - man/widecr.Rd | 8 - tests/testthat/test-head-to-head.R | 6 - tests/testthat/test-item-summary.R | 4 tests/testthat/test-results-widecr.R | 23 +++ vignettes/manipulation.Rmd | 6 - 24 files changed, 296 insertions(+), 237 deletions(-)
Title: Probabilistic Population Projection
Description: Generating population projections for all countries of the world using several probabilistic components, such as total fertility rate and life expectancy.
Author: Hana Sevcikova, Adrian Raftery, Thomas Buettner
Maintainer: Hana Sevcikova <hanas@uw.edu>
Diff between bayesPop versions 6.2-4 dated 2018-03-16 and 7.0-0 dated 2018-10-12
ChangeLog | 7 ++++++ DESCRIPTION | 10 ++++----- MD5 | 29 +++++++++++++++++----------- NAMESPACE | 2 + R/aggregate.R | 8 +++++-- R/predict.pop.R | 45 +++++++++++++++++++++++++++----------------- R/predict_subnat.R |only data/pasfr_global_norms.rda |only inst/extdata |only man/bayesPop-internal.Rd | 1 man/bayesPop-package.Rd | 10 +++++---- man/expressions.Rd | 8 +++++-- man/pop.aggregate.Rd | 10 +++++++-- man/pop.predict.subnat.Rd |only tests/run_tests.R | 1 tests/test_functions.R | 35 +++++++++++++++++++++++++++++++++- 16 files changed, 122 insertions(+), 44 deletions(-)
Title: Robust Rank Correlation Coefficient and Test
Description: Provides the robust gamma rank correlation coefficient as introduced by
Bodenhofer, Krone, and Klawonn (2013) <DOI:10.1016/j.ins.2012.11.026>
along with a permutation-based rank correlation test.
The rank correlation coefficient and the test are explicitly
designed for dealing with noisy numerical data.
Author: Martin Krone, Ulrich Bodenhofer
Maintainer: Ulrich Bodenhofer <bodenhofer@bioinf.jku.at>
Diff between rococo versions 1.1.5 dated 2017-07-08 and 1.1.7 dated 2018-10-12
DESCRIPTION | 14 ++++++++------ MD5 | 17 ++++++++++------- README.md |only build/vignette.rds |binary inst/CITATION | 2 +- inst/NEWS | 6 ++++++ inst/doc/rococo.pdf |binary src/Makevars |only src/Makevars.win |only src/rcor_exacttest.cpp | 1 + src/rcor_permtest.cpp | 1 + 11 files changed, 27 insertions(+), 14 deletions(-)
Title: Simulating and Conducting Phase 123 Trials
Description: Contains three simulation functions for implementing the entire Phase 123 trial and the separate Eff-Tox and Phase 3 portions of the trial, which may be beneficial for use on clusters. The functions AssignEffTox() and RandomizeEffTox() assign doses to patient cohorts during phase 12 and Reoptimize() determines the optimal dose to continue with during Phase 3. The functions ReturnMeansAgent() and ReturnMeanControl() gives the true mean survival for the agent doses and control and ReturnOCS() gives the operating characteristics of the design.
Author: Andrew G Chapple
Maintainer: Andrew G Chapple <achapp@lsuhsc.edu>
Diff between Phase123 versions 1.5 dated 2018-03-28 and 1.7 dated 2018-10-12
DESCRIPTION | 12 +++--- MD5 | 42 +++++++++++---------- NAMESPACE | 2 + R/RcppExports.R | 10 ++--- R/Reoptimize.R | 9 ++-- R/Reoptimize1.R |only R/ReturnMeanControl.R | 2 - R/ReturnMeansAgent.R | 1 R/ReturnOCS.R | 44 +++++++++++++--------- R/SimPhase123.R | 74 ++++++++++++++++++++++--------------- R/SimPhase3.R | 82 ++++++++++++++++++------------------------ man/AssignEffTox.Rd | 4 +- man/RandomEffTox.Rd | 4 +- man/Reoptimize.Rd | 3 - man/Reoptimize1.Rd |only man/ReturnMeanControl.Rd | 2 - man/RunAdaptiveEffToxTrial.Rd | 4 +- man/SimPhase123.Rd | 50 ++++++++++++------------- man/SimPhase3.Rd | 13 +++--- src/Makevars | 5 +- src/Makevars.win | 4 +- src/PHASE123CODE.cpp | 12 +----- src/RcppExports.cpp | 20 +++++----- 23 files changed, 206 insertions(+), 193 deletions(-)
Title: Estimation of Ego-Temporal Exponential Random Graph Models via
Expectation Maximization (EM)
Description: Estimation of ego-temporal exponential random graph models with two-stage estimation including initialization through k-means clustering on temporal exponential random graph model parameters and EM as per Campbell (2018) <doi:10.7910/DVN/TWHEZ9>.
Author: Benjamin W. Campbell [aut, cre],
Michael Salter-Townshend [ctb],
Thomas Brendan Murphy [ctb]
Maintainer: Benjamin W. Campbell <campbell.1721@osu.edu>
Diff between egoTERGM versions 1.0.0 dated 2018-04-25 and 2.0.1 dated 2018-10-12
DESCRIPTION | 12 - MD5 | 42 ++- NAMESPACE | 7 R/ego_ergm.R | 253 ++++++++++++----------- R/ego_tergm.R | 454 ++++++++++++++++++++----------------------- R/interpret_ego_tergm.R | 4 R/plot_ego_tergm.R | 4 R/prepare_for_tergm.R | 6 R/sim_egonets.R | 117 ++++++----- R/stability_validation.R |only data/ego_tergm_fit.rda |binary inst/doc/KnechtVignette.R | 2 inst/doc/KnechtVignette.Rmd | 7 inst/doc/KnechtVignette.html | 412 +++++++++++++++++++++++++++++---------- man/ego_ergm.Rd | 22 +- man/ego_tergm.Rd | 10 man/interpret_ego_tergm.Rd | 4 man/plot_ego_tergm.Rd | 4 man/prepare_for_tergm.Rd | 6 man/sim_egonets.Rd | 15 - man/stability_validation.Rd |only vignettes/KnechtVignette.Rmd | 7 vignettes/egoTERGM.bib | 17 - 23 files changed, 835 insertions(+), 570 deletions(-)
More information about ChemoSpecUtils at CRAN
Permanent link
Title: Cross-Recurrence Quantification Analysis for Categorical and
Continuous Time-Series
Description: Cross-recurrence quantification analysis
of two time-series, of either categorical or
continuous values. It provides different methods
for profiling cross-recurrence, i.e., only looking
at the diagonal recurrent points, as well as more
in-depth measures of the whole cross-recurrence plot,
e.g., recurrence rate. Please refer to by Coco and Dale (2014)
<doi:10.3389/fpsyg.2014.00510> for further details about the method.
Author: Moreno I. Coco and Rick Dale with contributions of James D. Dixon and John Nash
Maintainer: Moreno I. Coco <moreno.cocoi@gmail.com>
Diff between crqa versions 1.0.8 dated 2018-08-19 and 1.0.9 dated 2018-10-12
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- R/drpdfromts.R | 23 ++--------------------- 3 files changed, 8 insertions(+), 27 deletions(-)
Title: TBF Methodology Extension for Multinomial Outcomes
Description: Extends the test-based Bayes factor (TBF) methodology to multinomial regression models and discrete time-to-event models with competing risks. The TBF methodology has been well developed and implemented for the generalised linear model [Held et al. (2015) <doi:10.1214/14-STS510>] and for the Cox model [Held et al. (2016) <doi:10.1002/sim.7089>].
Author: Rachel Heyard [aut, cre]
Maintainer: Rachel Heyard <rachel.heyard@uzh.ch>
Diff between TBFmultinomial versions 0.1.2 dated 2018-08-23 and 0.1.3 dated 2018-10-12
DESCRIPTION | 6 ++-- MD5 | 14 ++++----- R/VAP_data.R | 2 - inst/doc/TBFmultinomial.R | 19 +++++++++---- inst/doc/TBFmultinomial.Rnw | 61 +++++++++++++++++++++++-------------------- inst/doc/TBFmultinomial.pdf |binary vignettes/TBFmultinomial.Rnw | 61 +++++++++++++++++++++++-------------------- vignettes/vignette.bib | 15 ++++------ 8 files changed, 98 insertions(+), 80 deletions(-)
More information about TBFmultinomial at CRAN
Permanent link
More information about RcppNLoptExample at CRAN
Permanent link
Title: PX-Web Data by API
Description: Function to read PX-Web data into R via API. The example code reads data from the three national statistical institutes, Statistics Norway, Statistics Sweden and Statistics Finland.
Author: Øyvind Langsrud and Jan Bruusgaard
Maintainer: Øyvind Langsrud <oyl@ssb.no>
Diff between PxWebApiData versions 0.1.0 dated 2018-06-06 and 0.2.0 dated 2018-10-12
DESCRIPTION | 8 +- MD5 | 8 +- NAMESPACE | 2 R/ApiData.R | 214 +++++++++++++++++++++++++++++++++++++++++---------------- man/ApiData.Rd | 81 +++++++++++++-------- 5 files changed, 215 insertions(+), 98 deletions(-)
Title: 'binb' is not 'Beamer'
Description: A collection of 'LaTeX' styles using 'Beamer' customization for
pdf-based presentation slides in 'RMarkdown'. At present it contains
'RMarkdown' adaptations of the LaTeX themes 'Metropolis' (formerly 'mtheme')
theme by Matthias Vogelgesang and others (now included in 'TeXLive'), the
'IQSS' by Ista Zahn (which is included here), and the 'Monash' theme by
Rob J Hyndman. Additional (free) fonts may be needed: 'Metropolis' prefers
'Fira', and 'IQSS' requires 'Libertinus'.
Author: Dirk Eddelbuettel, Ista Zahn and Rob Hyndman
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between binb versions 0.0.2 dated 2018-09-27 and 0.0.3 dated 2018-10-12
binb-0.0.2/binb/inst/rmarkdown/templates/metropolis/resources/auto |only binb-0.0.3/binb/ChangeLog | 34 +++++ binb-0.0.3/binb/DESCRIPTION | 17 +- binb-0.0.3/binb/MD5 | 33 +++-- binb-0.0.3/binb/NAMESPACE | 2 binb-0.0.3/binb/R/binb.R | 57 +++++++++- binb-0.0.3/binb/README.md | 35 ++++-- binb-0.0.3/binb/inst/NEWS.Rd | 13 ++ binb-0.0.3/binb/inst/doc/metropolisDemo.pdf |binary binb-0.0.3/binb/inst/iqssDemo/beamerfontthemeiqss.sty | 49 +++++++- binb-0.0.3/binb/inst/rmarkdown/templates/iqss/resources/template.tex | 4 binb-0.0.3/binb/inst/rmarkdown/templates/iqss/skeleton/beamerfontthemeiqss.sty | 49 +++++++- binb-0.0.3/binb/inst/rmarkdown/templates/monash |only binb-0.0.3/binb/man/metropolis.Rd | 14 ++ 14 files changed, 259 insertions(+), 48 deletions(-)
Title: Implementation of Marker-Assisted Mini-Pooling with Algorithm
Description: To determine the number of quantitative assays needed for a sample
of data using pooled testing methods, which include mini-pooling (MP), MP
with algorithm (MPA), and marker-assisted MPA (mMPA). To estimate the number
of assays needed, the package also provides a tool to conduct Monte Carlo (MC)
to simulate different orders in which the sample would be collected to form pools.
Using MC avoids the dependence of the estimated number of assays on any specific
ordering of the samples to form pools.
Author: "Tao Liu, PhD <tliu@stat.brown.edu> [aut, cre]" "Yizhen Xu, ScM <yizhen_xu@brown.edu> [aut]"
Maintainer: "Tao Liu, PhD" <tliu@stat.brown.edu>
Diff between mMPA versions 0.1.0 dated 2017-03-22 and 1.2.0 dated 2018-10-12
DESCRIPTION | 12 ++++++------ MD5 | 16 ++++++++-------- R/pooling-basic-funs.R | 20 ++++++++++++++++++-- build/vignette.rds |binary inst/doc/my-vignette.html | 14 +++++++------- man/minipool.Rd | 4 ++++ man/mmpa.Rd | 6 ++++-- man/mpa.Rd | 4 ++++ man/pooling_mc.Rd | 6 ++++-- 9 files changed, 55 insertions(+), 27 deletions(-)
Title: Depth Measures in Multivariate, Regression and Functional
Settings
Description: Tools to compute depth measures and implementations of related
tasks such as outlier detection, data exploration and
classification of multivariate, regression and functional data.
Author: Pieter Segaert [aut],
Mia Hubert [aut],
Peter Rousseeuw [aut],
Jakob Raymaekers [aut, cre],
Kaveh Vakili [ctb]
Maintainer: Jakob Raymaekers <jakob.raymaekers@kuleuven.be>
Diff between mrfDepth versions 1.0.9 dated 2018-09-26 and 1.0.10 dated 2018-10-12
DESCRIPTION | 8 ++++---- MD5 | 20 ++++++++++---------- R/distSpace.R | 10 +++++----- inst/NEWS.Rd | 10 +++++++++- man/bagdistance.Rd | 2 +- man/dirOutl.Rd | 3 +-- man/dprojdepth.Rd | 2 +- man/dprojmedian.Rd | 2 +- man/fOutl.Rd | 3 +-- man/fom.Rd | 6 +++--- man/outlyingness.Rd | 1 + 11 files changed, 37 insertions(+), 30 deletions(-)
Title: Simple yet Flexible Letters via the 'KOMA-Script LaTeX Bundle'
Description: An R Markdown template for writing beautiful yet versatile letters,
using the 'KOMA-Script' letter class 'scrlttr2' and an adaptation of the
'pandoc-letter' template. 'scrlttr2' provides layouts for many different
window envelope types and the possibility to define your own.
Author: Robert Nuske [aut, cre] (<https://orcid.org/0000-0001-9773-2061>),
Dirk Eddelbuettel [aut],
Aaron Wolen [aut]
Maintainer: Robert Nuske <robert.nuske@mailbox.org>
Diff between komaletter versions 0.2.0 dated 2018-04-13 and 0.3.0 dated 2018-10-12
ChangeLog | 10 DESCRIPTION | 10 MD5 | 33 - NEWS.md |only R/komaletter.R | 22 - README.md | 3 build/vignette.rds |binary inst/doc/intro.Rmd | 31 - inst/doc/intro.html | 205 +++++----- inst/doc/letter_example1.pdf |binary inst/doc/letter_example2.pdf |binary inst/doc/letter_example3.pdf |binary inst/doc/parameterized_letter.R |only inst/doc/parameterized_letter.Rmd |only inst/doc/parameterized_letter.html |only inst/rmarkdown/templates/pdf/resources/maintainersDelight.lco | 5 inst/rmarkdown/templates/pdf/resources/template.tex | 4 man/komaletter.Rd | 22 - vignettes/intro.Rmd | 31 - vignettes/parameterized_letter.Rmd |only 20 files changed, 212 insertions(+), 164 deletions(-)
Title: Explore Panel Data Interactively
Description: Provides a shiny-based front end (the 'ExPanD' app) and
a set of functions for exploratory panel data analysis. Run as a web-based app,
'ExPanD' enables users to assess the robustness of empirical evidence without
providing them access to the underlying data. You can also use the functions
of the package to support your exploratory data analysis workflow. Refer to
the vignettes of the package for more information on how to use 'ExPanD'
and/or the functions of this package.
Author: Joachim Gassen [aut, cre] (<https://orcid.org/0000-0003-4364-2911>)
Maintainer: Joachim Gassen <gassen@wiwi.hu-berlin.de>
Diff between ExPanDaR versions 0.2.0 dated 2018-05-11 and 0.3.0 dated 2018-10-12
DESCRIPTION | 14 LICENSE | 4 MD5 | 116 - NAMESPACE | 54 NEWS.md |only R/ExPanD.R | 498 ++-- R/ExPanDaR.R | 40 R/data.R | 364 +-- R/prepapre_correlation_graph.R | 86 R/prepapre_correlation_table.R | 150 - R/prepapre_descriptive_table.R | 104 R/prepapre_missing_values_graph.R | 126 - R/prepapre_regression_table.R | 445 ++-- R/prepare_by_group_bar_graph.R | 106 R/prepare_by_group_violin_graph.R |only R/prepare_ext_obs_table.R | 128 - R/prepare_quantile_trend_graph.R | 140 - R/prepare_scatter_plot.R | 110 - R/prepare_trend_graph.R | 138 - R/treat_outliers.R | 238 +- build/vignette.rds |binary data/ExPanD_config_russell_3000.RData |binary data/ExPanD_config_worldbank.RData |binary data/datalist | 14 data/russell_3000.RData |binary data/russell_3000_data_def.RData |binary data/worldbank_var_def.RData |binary inst/application/server.R | 2992 ++++++++++++++-------------- inst/application/shiny_data.Rda |only inst/application/ui.R | 503 ++-- inst/application/www/message-handler.js | 10 inst/doc/ExPanDaR-functions.R | 180 - inst/doc/ExPanDaR-functions.Rmd | 396 +-- inst/doc/ExPanDaR-functions.html | 2214 ++++++++++---------- inst/doc/use_ExPanD.R | 215 +- inst/doc/use_ExPanD.Rmd | 621 ++--- inst/doc/use_ExPanD.html | 520 ++-- man/ExPanD.Rd | 328 +-- man/ExPanD_config_russell_3000.Rd | 46 man/ExPanD_config_worldbank.Rd | 50 man/ExPanDaR.Rd | 48 man/prepare_by_group_bar_graph.Rd | 84 man/prepare_by_group_violin_graph.Rd |only man/prepare_correlation_graph.Rd | 58 man/prepare_correlation_table.Rd | 78 man/prepare_descriptive_table.Rd | 82 man/prepare_ext_obs_table.Rd | 92 man/prepare_missing_values_graph.Rd | 62 man/prepare_quantile_trend_graph.Rd | 86 man/prepare_regression_table.Rd | 125 - man/prepare_scatter_plot.Rd | 84 man/prepare_trend_graph.Rd | 72 man/russell_3000.Rd | 64 man/russell_3000_data_def.Rd | 60 man/treat_outliers.Rd | 117 - man/worldbank.Rd | 78 man/worldbank_data_def.Rd | 66 man/worldbank_var_def.Rd | 52 vignettes/ExPanDaR-functions.Rmd | 396 +-- vignettes/data/gapminder.csv | 3410 ++++++++++++++++---------------- vignettes/use_ExPanD.Rmd | 621 ++--- 61 files changed, 8566 insertions(+), 8119 deletions(-)
Title: Infrastructure for Running, Cycling and Swimming Data from
GPS-Enabled Tracking Devices
Description: Provides infrastructure for handling running, cycling and swimming data from GPS-enabled tracking devices within R. The package provides methods to extract, clean and organise workout and competition data into session-based and unit-aware data objects of class 'trackeRdata' (S3 class). The information can then be visualised, summarised, and analysed through flexible and extensible methods. Frick and Kosmidis (2017) <doi: 10.18637/jss.v082.i07>, which is updated and maintained as one of the vignettes, provides detailed descriptions of the package and its methods, and real-data demonstrations of the package functionality.
Author: Ioannis Kosmidis [aut, cre] (<https://orcid.org/0000-0003-1556-0302>),
Hannah Frick [aut] (<https://orcid.org/0000-0002-6049-5258>),
Robin Hornak [aut]
Maintainer: Ioannis Kosmidis <ioannis.kosmidis@warwick.ac.uk>
Diff between trackeR versions 1.1 dated 2018-09-24 and 1.2.0 dated 2018-10-12
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- NEWS.md | 10 +++++----- inst/doc/TourDetrackeR.R | 8 +++++--- inst/doc/TourDetrackeR.Rmd | 8 +++++--- inst/doc/TourDetrackeR.html | 19 +++++++++++-------- inst/doc/trackeR.pdf |binary vignettes/TourDetrackeR.Rmd | 8 +++++--- 8 files changed, 41 insertions(+), 32 deletions(-)
Title: Bayesian Additive Models for Location Scale and Shape (and
Beyond)
Description: Infrastructure for estimating probabilistic distributional regression models in a Bayesian framework.
The distribution parameters may capture location, scale, shape, etc. and every parameter may depend
on complex additive terms (fixed, random, smooth, spatial, etc.) similar to a generalized additive model.
The conceptual and computational framework is introduced in Umlauf, Klein, Zeileis (2017)
<doi:10.1080/10618600.2017.1407325>.
Author: Nikolaus Umlauf [aut, cre],
Nadja Klein [aut],
Achim Zeileis [aut] (<https://orcid.org/0000-0003-0918-3766>),
Meike Koehler [aut],
Thorsten Simon [ctb],
Stanislaus Stadlmann [ctb]
Maintainer: Nikolaus Umlauf <Nikolaus.Umlauf@uibk.ac.at>
Diff between bamlss versions 1.0-0 dated 2018-04-13 and 1.0-1 dated 2018-10-12
DESCRIPTION | 15 MD5 | 30 NAMESPACE | 38 R/BAMLSS.R | 1821 ++++++++++-- R/BayesX.R | 204 + R/families.R | 7176 +++++++++++++++++++++++++------------------------ R/optimizers.R | 338 +- R/samplers.R | 121 man/BayesX.Rd | 2 man/bboost.Rd |only man/boost.Rd | 4 man/kr.Rd |only man/lasso.Rd | 5 man/lin.Rd |only man/n.Rd | 83 man/rb.Rd |only man/shortcuts.Rd |only man/sr.Rd |only src/bamlss_functions.c | 71 19 files changed, 5748 insertions(+), 4160 deletions(-)
Title: Multi-Data-Driven Sparse PLS Robust to Missing Samples
Description: Allows to build Multi-Data-Driven Sparse PLS models. Multi-blocks with
high-dimensional settings are particularly sensible to this.
Author: Hadrien Lorenzo [aut, cre]
Maintainer: Hadrien Lorenzo <hadrien.lorenzo.2015@gmail.com>
Diff between ddsPLS versions 1.0.0 dated 2018-09-19 and 1.0.1 dated 2018-10-12
DESCRIPTION | 8 +- MD5 | 28 ++++----- R/mddsPLS.R | 155 ++++++++++++++++++++++++++++++++++++++------------ R/perf_mddsPLS.R | 8 +- R/plot.perf_mddsPLS.R | 43 ++++++++++--- R/predict.mddsPLS.R | 6 - build/partial.rdb |binary build/vignette.rds |binary inst/doc/ddsPLS.R | 16 +++-- inst/doc/ddsPLS.Rmd | 18 +++-- inst/doc/ddsPLS.html | 31 ++++++---- man/MddsPLS_core.Rd | 8 +- man/mddsPLS.Rd | 2 man/perf_mddsPLS.Rd | 7 +- vignettes/ddsPLS.Rmd | 18 +++-- 15 files changed, 240 insertions(+), 108 deletions(-)
Title: Analysis of Complex Survey Samples
Description: Summary statistics, two-sample tests, rank tests, generalised linear models, cumulative link models, Cox models, loglinear models, and general maximum pseudolikelihood estimation for multistage stratified, cluster-sampled, unequally weighted survey samples. Variances by Taylor series linearisation or replicate weights. Post-stratification, calibration, and raking. Two-phase subsampling designs. Graphics. PPS sampling without replacement. Principal components, factor analysis.
Author: Thomas Lumley
Maintainer: "Thomas Lumley" <t.lumley@auckland.ac.nz>
Diff between survey versions 3.33-2 dated 2018-03-12 and 3.34 dated 2018-10-12
DESCRIPTION | 13 - MD5 | 64 +++---- R/multistage.R | 2 R/regtest.R | 18 -- R/survey.R | 452 +++++++++++++++++----------------------------------- R/surveyrep.R | 35 +++- R/svyhist.R | 6 R/svyranktest.R | 27 ++- R/sysdata.rda |binary THANKS | 2 build/vignette.rds |binary data/api.rda |binary data/crowd.rda |binary data/election.rda |binary data/fpc.rda |binary data/hospital.rda |binary data/mu284.rda |binary data/nhanes.rda |binary data/scd.rda |binary data/yrbs.rda |binary inst/CITATION | 6 inst/NEWS | 30 +++ inst/doc/domain.pdf |binary inst/doc/epi.pdf |binary inst/doc/phase1.pdf |binary inst/doc/pps.pdf |binary inst/doc/survey.pdf |binary man/nhanes.Rd | 2 man/svycontrast.Rd | 6 man/svycoxph.Rd | 3 man/svyglm.Rd | 13 + man/svyhist.Rd | 10 + man/svymle.Rd | 55 ++++-- 33 files changed, 353 insertions(+), 391 deletions(-)
Title: Database Query Interfaces
Description: Facilitates interaction with 'ODBC' data sources.
Author: Mike Lee
Maintainer: Mike Lee <random.deviate@gmail.com>
Diff between SQRL versions 0.4.0 dated 2018-06-03 and 0.5.0 dated 2018-10-12
DESCRIPTION | 10 +++---- MD5 | 14 +++++----- R/SQRL.R | 68 +++++++++++++++++++++++++++++++++++++--------------- build/partial.rdb |binary man/SQRL-package.Rd | 32 +++++++++++++----------- man/sqrlParams.Rd | 1 man/sqrlSources.Rd | 10 ++----- man/sqrlUsage.Rd | 8 ++++-- 8 files changed, 89 insertions(+), 54 deletions(-)
Title: Bayesian Fertility Projection
Description: Making probabilistic projections of total fertility rate for all countries of the world, using a Bayesian hierarchical model.
Author: Hana Sevcikova (hanas@uw.edu), Leontine Alkema (alkema@nus.edu.sg), Adrian Raftery (raftery@uw.edu), Bailey Fosdick (bfosdick@uw.edu), Patrick Gerland (gerland@un.org)
Maintainer: Hana Sevcikova <hanas@uw.edu>
Diff between bayesTFR versions 6.1-2 dated 2018-01-19 and 6.2-0 dated 2018-10-12
ChangeLog | 10 ++++++ DESCRIPTION | 8 ++--- MD5 | 18 +++++------ R/get_outputs.R | 19 +++++++----- R/mcmc_ini.R | 67 +++++++++++++++++++++----------------------- R/plot_functions.R | 5 +-- R/predict_tfr.R | 2 - R/predict_tfr_subnat.R | 73 +++++++++++++++++++++++++++--------------------- man/bayesTFR-package.Rd | 4 +- tests/test_functions.R | 16 ++++++++++ 10 files changed, 131 insertions(+), 91 deletions(-)