Title: Random Partition Distribution Indexed by Pairwise Information
Description: Implementations are provided for the models described in the paper D. B. Dahl, R. Day, J. Tsai (2017) <DOI:10.1080/01621459.2016.1165103>. The Ewens, Ewens-Pitman, Ewens attraction, Ewens-Pitman attraction, and ddCRP distributions are available for prior and posterior simulation. Posterior simulation is based on a user-supplied likelihood. Supporting functions for partition estimation and plotting are also provided.
Author: David B. Dahl [aut, cre]
Maintainer: David B. Dahl <dahl@stat.byu.edu>
Diff between shallot versions 0.4.4 dated 2018-06-30 and 0.4.5 dated 2018-10-30
shallot-0.4.4/shallot/inst/java/scala-2.11/shallot.jar |only shallot-0.4.4/shallot/inst/java/scala-2.12/shallot.jar |only shallot-0.4.4/shallot/java/shallot-sources.jar |only shallot-0.4.5/shallot/DESCRIPTION | 10 shallot-0.4.5/shallot/MD5 | 28 - shallot-0.4.5/shallot/NAMESPACE | 2 shallot-0.4.5/shallot/NEWS | 3 shallot-0.4.5/shallot/R/onLoad.R | 15 shallot-0.4.5/shallot/R/shallot.R | 278 +++++++--- shallot-0.4.5/shallot/inst/java/scala-2.11/shallot_2.11-0.4.5.jar |only shallot-0.4.5/shallot/inst/java/scala-2.12/shallot_2.12-0.4.5.jar |only shallot-0.4.5/shallot/java/shallot_2.12-0.4.5-sources.jar |only shallot-0.4.5/shallot/man/enumerate.partitions.Rd | 9 shallot-0.4.5/shallot/man/nsubsets.Rd | 3 shallot-0.4.5/shallot/man/process.samples.Rd | 9 shallot-0.4.5/shallot/man/sample.partitions.Rd | 1 shallot-0.4.5/shallot/man/sample.partitions.posterior.Rd |only shallot-0.4.5/shallot/man/sampling.model.Rd |only shallot-0.4.5/shallot/man/shallot-package.Rd | 8 19 files changed, 243 insertions(+), 123 deletions(-)
Title: An R Interface to Open-Access Malaria Data, Hosted by the
'Malaria Atlas Project'
Description: A suite of tools to allow you to download all
publicly available parasite rate survey points, mosquito occurrence points and raster surfaces from
the 'Malaria Atlas Project' <https://map.ox.ac.uk/> servers as well as utility functions for plotting
the downloaded data.
Author: Daniel Pfeffer [aut] (<https://orcid.org/0000-0002-2204-3488>),
Tim Lucas [aut, cre] (<https://orcid.org/0000-0003-4694-8107>),
Daniel May [aut] (<https://orcid.org/0000-0003-0005-2452>),
Suzanne Keddie [aut] (<https://orcid.org/0000-0003-1254-7794>),
Jen Rozier [aut] (<https://orcid.org/0000-0002-2610-7557>),
Harry Gibson [aut] (<https://orcid.org/0000-0001-6779-3250>),
Nick Golding [ctb],
David Smith [ctb]
Maintainer: Tim Lucas <timcdlucas@gmail.com>
Diff between malariaAtlas versions 0.0.2 dated 2018-09-11 and 0.0.3 dated 2018-10-30
DESCRIPTION | 7 ++++--- MD5 | 9 +++++---- R/getPR.R | 2 +- README.md | 4 ++++ inst/CITATION |only inst/doc/overview.html | 10 +++++----- 6 files changed, 19 insertions(+), 13 deletions(-)
Title: A Friendly Package Manager
Description: Manage project dependencies from your DESCRIPTION file. Create a reproducible virtual environment with minimal additional files in your project. Provides tools to add, remove, and update dependencies as well as install existing dependencies with a single function.
Author: Andrew Kane [aut, cre]
Maintainer: Andrew Kane <andrew@chartkick.com>
Diff between jetpack versions 0.3.1 dated 2018-07-25 and 0.4.0 dated 2018-10-30
jetpack-0.3.1/jetpack/man/info.Rd |only jetpack-0.3.1/jetpack/man/search.Rd |only jetpack-0.4.0/jetpack/DESCRIPTION | 15 +- jetpack-0.4.0/jetpack/MD5 | 12 -- jetpack-0.4.0/jetpack/NAMESPACE | 3 jetpack-0.4.0/jetpack/NEWS.md | 9 + jetpack-0.4.0/jetpack/R/jetpack.R | 192 ++++++++++++++---------------------- jetpack-0.4.0/jetpack/README.md | 47 +------- 8 files changed, 107 insertions(+), 171 deletions(-)
Title: Handy File and String Manipulation
Description: This started out as a package for file and string manipulation.
Since then, the 'fs' and 'strex' packages emerged, offering functionality
previously given by this package (but it's done better in these new ones).
Those packages have hence almost pushed 'filesstrings' into extinction.
However, it still has a small number of unique, handy file manipulation
functions which can be seen in the vignette.
One example is a function to remove spaces from all file names in a
directory.
Author: Rory Nolan [aut, cre, cph] (<https://orcid.org/0000-0002-5239-4043>),
Sergi Padilla-Parra [ths] (<https://orcid.org/0000-0002-8010-9481>)
Maintainer: Rory Nolan <rorynoolan@gmail.com>
Diff between filesstrings versions 2.7.0 dated 2018-09-03 and 3.0.0 dated 2018-10-30
filesstrings-2.7.0/filesstrings/R/filesstrings-deprecated.R |only filesstrings-2.7.0/filesstrings/man/count_matches.Rd |only filesstrings-2.7.0/filesstrings/man/str_with_patterns.Rd |only filesstrings-3.0.0/filesstrings/DESCRIPTION | 21 filesstrings-3.0.0/filesstrings/MD5 | 40 - filesstrings-3.0.0/filesstrings/NAMESPACE | 1 filesstrings-3.0.0/filesstrings/NEWS.md | 16 filesstrings-3.0.0/filesstrings/R/all-equal.R | 26 filesstrings-3.0.0/filesstrings/R/files.R | 128 ++-- filesstrings-3.0.0/filesstrings/R/filesstrings-defunct.R |only filesstrings-3.0.0/filesstrings/R/filesstrings.R | 14 filesstrings-3.0.0/filesstrings/R/str-before.R | 5 filesstrings-3.0.0/filesstrings/R/str-num-before.R | 3 filesstrings-3.0.0/filesstrings/R/str-pad.R | 6 filesstrings-3.0.0/filesstrings/R/utils.R | 11 filesstrings-3.0.0/filesstrings/build/partial.rdb |binary filesstrings-3.0.0/filesstrings/inst/doc/files.html | 4 filesstrings-3.0.0/filesstrings/man/filesstrings-defunct.Rd | 17 filesstrings-3.0.0/filesstrings/tests/spelling.R | 6 filesstrings-3.0.0/filesstrings/tests/testthat/test-str-num-before-examples.R | 6 filesstrings-3.0.0/filesstrings/tests/testthat/test_files.R | 73 +- filesstrings-3.0.0/filesstrings/tests/testthat/test_strings.R | 285 ++++++---- filesstrings-3.0.0/filesstrings/tests/testthat/test_utils.R | 41 - 23 files changed, 435 insertions(+), 268 deletions(-)
Title: A Method to Download Department of Education College Scorecard
Data
Description: A method to download Department of Education College
Scorecard data using the public API
<https://collegescorecard.ed.gov/data/documentation/>. It is based on
the 'dplyr' model of piped commands to select and filter data in a
single chained function call. An API key from the U.S. Department of
Education is required.
Author: Benjamin Skinner [aut, cre] (<https://orcid.org/0000-0002-0337-7415>)
Maintainer: Benjamin Skinner <btskinner@virginia.edu>
Diff between rscorecard versions 0.10.0 dated 2018-10-01 and 0.11.0 dated 2018-10-30
rscorecard-0.10.0/rscorecard/inst |only rscorecard-0.11.0/rscorecard/DESCRIPTION | 6 +++--- rscorecard-0.11.0/rscorecard/MD5 | 8 +++----- rscorecard-0.11.0/rscorecard/NEWS.md | 3 +++ rscorecard-0.11.0/rscorecard/R/sysdata.rda |binary 5 files changed, 9 insertions(+), 8 deletions(-)
Title: Spatial Objects of the Czech Republic
Description: Administrative regions, rivers and water bodies of the Czech Republic.
Author: Jindra Lacko
Maintainer: Jindra Lacko <jindra.lacko@gmail.com>
Diff between RCzechia versions 1.3.0 dated 2018-08-07 and 1.3.1 dated 2018-10-30
DESCRIPTION | 10 +++---- MD5 | 64 ++++++++++++++++++++++++------------------------- NAMESPACE | 2 - NEWS.md | 3 ++ R/RCzechia.R | 2 - R/casti.R | 5 +-- R/chr_uzemi.R | 5 +-- R/kraje.R | 6 +--- R/lesy.R | 7 +---- R/obce_body.R | 9 +++--- R/obce_polygony.R | 9 +++--- R/okresy.R | 8 +++--- R/orp_polygony.R | 9 +++--- R/plochy.R | 9 +++--- R/reky.R | 9 +++--- R/republika.R | 8 +++--- R/silnice.R | 9 +++--- R/zeleznice.R | 9 +++--- README.md | 3 -- inst/doc/vignette.html | 18 ++++++------- man/casti.Rd | 5 --- man/chr_uzemi.Rd | 5 --- man/kraje.Rd | 4 --- man/lesy.Rd | 5 --- man/obce_body.Rd | 5 --- man/obce_polygony.Rd | 5 --- man/okresy.Rd | 4 --- man/orp_polygony.Rd | 5 --- man/plochy.Rd | 5 --- man/reky.Rd | 5 --- man/republika.Rd | 4 --- man/silnice.Rd | 5 --- man/zeleznice.Rd | 5 --- 33 files changed, 109 insertions(+), 157 deletions(-)
Title: Freshing Up your 'ggplot2' Plots
Description: Functions for working with legends and axis lines of 'ggplot2',
facets that repeat axis lines on all panels, and some 'knitr' extensions.
Author: Stefan McKinnon Edwards [aut, ctb, cre]
(<https://orcid.org/0000-0002-4628-8148>),
Baptiste Auguie [ctb] (For g_legend and grid_arrange_shared_legend),
Shaun Jackman [ctb] (For grid_arrange_shared_legend),
Hadley Wickham [ctb] (ggplot2 functions),
Winston Chang [ctb] (ggplot2 functions)
Maintainer: Stefan McKinnon Edwards <sme@iysik.com>
Diff between lemon versions 0.4.1 dated 2018-06-28 and 0.4.2 dated 2018-10-30
DESCRIPTION | 21 MD5 | 89 ++- NAMESPACE | 16 R/axis-annotation.r |only R/facet-rep-lab.r | 8 R/facet-wrap.r | 13 R/geom-pointline.r | 153 +++++- R/ggplot2.r | 36 - R/grob_utils.r |only R/guides-axis.r | 101 ++-- R/legends.r | 6 R/lemon-plot.r |only R/lemon_print.r | 248 +++++------ R/scale-symmetric.r |only build/vignette.rds |binary inst/doc/capped-axes.R | 8 inst/doc/capped-axes.Rmd | 21 inst/doc/capped-axes.html | 607 ++++++++++++++++++--------- inst/doc/facet-rep-labels.Rmd | 6 inst/doc/facet-rep-labels.html | 385 +++++++++++------ inst/doc/geoms.R | 4 inst/doc/geoms.Rmd | 4 inst/doc/geoms.html | 290 +++++++++---- inst/doc/gtable_show_lemonade.html | 583 ++++++++++++++++---------- inst/doc/legends.html | 824 ++++++++++++++++++++++--------------- inst/doc/lemon_print.html | 721 +++++++++++++++++++------------- inst/examples/axis-annotation-ex.r |only man/annotate_axis.Rd |only man/brackets.Rd | 4 man/coord_capped.Rd | 14 man/coord_flex.Rd | 15 man/dot.Rd | 5 man/element_render.Rd |only man/facet_rep.Rd | 4 man/g_legend.Rd | 2 man/geom_pointpath.Rd | 41 + man/geom_siderange.Rd | 6 man/get_panel_range.Rd |only man/ggplot2-non-exports.Rd | 4 man/grid_arrange_shared_legend.Rd | 4 man/gtable_show.Rd | 4 man/lemon-ggproto.Rd | 17 man/lemon.Rd | 1 man/lemon_plot.Rd |only man/reposition_legend.Rd | 7 man/scale_symmetric.Rd |only tests/testthat.R | 2 tests/testthat/test_lemon_plot.r |only vignettes/capped-axes.Rmd | 21 vignettes/facet-rep-labels.Rmd | 6 vignettes/geoms.Rmd | 4 51 files changed, 2772 insertions(+), 1533 deletions(-)
Title: Interface for 'GraphFrames'
Description: A 'sparklyr' <https://spark.rstudio.com/> extension that provides an R
interface for 'GraphFrames' <https://graphframes.github.io/>. 'GraphFrames' is a package
for 'Apache Spark' that provides a DataFrame-based API for working with graphs. Functionality
includes motif finding and common graph algorithms, such as PageRank and Breadth-first
search.
Author: Kevin Kuo [aut, cre] (<https://orcid.org/0000-0001-7803-7901>)
Maintainer: Kevin Kuo <kevin.kuo@rstudio.com>
Diff between graphframes versions 0.1.1 dated 2018-06-21 and 0.1.2 dated 2018-10-30
DESCRIPTION | 10 +- MD5 | 40 ++++---- NAMESPACE | 1 NEWS.md |only R/dependencies.R | 13 ++ R/gf_bfs.R | 10 +- R/gf_connected_components.R | 4 R/gf_examples.R | 12 +- R/gf_interface.R | 8 - R/gf_lpa.R | 2 R/gf_pagerank.R | 8 - R/gf_scc.R | 2 R/gf_shortest_paths.R | 2 R/imports.R | 3 README.md | 161 ++++++++++++++++++---------------- man/gf_bfs.Rd | 2 man/gf_connected_components.Rd | 3 man/gf_graphframe.Rd | 2 man/spark_graphframe.Rd | 1 tests/testthat/helper-initialize.R | 2 tests/testthat/output/gf_pagerank.txt | 14 +- tools/readme/unnamed-chunk-4-1.png |only 22 files changed, 167 insertions(+), 133 deletions(-)
Title: The Generalized DINA Model Framework
Description: A set of psychometric tools for cognitive diagnosis modeling for both dichotomous and polytomous responses. Various cognitive diagnosis models can be estimated, include the generalized deterministic inputs, noisy and gate (G-DINA) model by de la Torre (2011) <DOI:10.1007/s11336-011-9207-7>, the sequential G-DINA model by Ma and de la Torre (2016) <DOI:10.1111/bmsp.12070>, and many other models they subsume. Joint attribute distribution can be independent, saturated, higher-order, loglinear smoothed or structured. Q-matrix validation, item and model fit statistics, model comparison at test and item level and differential item functioning can also be conducted. A graphical user interface is also provided.
Author: Wenchao Ma [aut, cre, cph],
Jimmy de la Torre [aut, cph],
Miguel Sorrel [ctb]
Maintainer: Wenchao Ma <wenchao.ma@ua.edu>
Diff between GDINA versions 2.1.15 dated 2018-06-07 and 2.2.0 dated 2018-10-30
DESCRIPTION | 26 - MD5 | 95 +++--- NEWS.md | 10 R/Est.R | 126 +++++--- R/ExportedFuncs.R | 4 R/GDI.R | 7 R/GDINA.R | 15 - R/HO.R | 214 ++++++++++----- R/Louis.R |only R/M2.R | 6 R/Mstep.R | 2 R/RcppExports.R | 338 ++++++++++++----------- R/designmatrix.R | 53 +-- R/dif.R | 506 ++++++++++++++++++++++++++++------- R/extract.R | 19 - R/modelcomp.R | 123 +++++++- R/plotIRF.GDINA.R | 7 R/print.GDINA.R | 33 +- R/s3GDINA.R | 17 - R/score.R | 51 ++- R/startGDINA.R | 7 R/structuralparm.R | 8 R/summary.GDINA.R | 3 R/utils.R | 38 +- R/zzz.R | 9 README.md | 18 + build |only inst/CITATION | 2 inst/doc |only inst/shiny/server.R | 554 +++++++++++++++++++++++++++++++++++---- inst/shiny/ui.R | 311 ++++++++++++++------- man/GDINA.Rd | 40 +- man/Qval.Rd | 4 man/autoGDINA.Rd | 8 man/designmatrix.Rd | 2 man/dif.Rd | 21 - man/internal_GDINA.Rd | 1 man/itemfit.Rd | 5 man/itemparm.Rd | 5 man/modelcomp.Rd | 47 ++- man/modelfit.Rd | 4 man/personparm.Rd | 4 man/simGDINA.Rd | 9 man/startGDINA.Rd | 2 src/LouisC.cpp |only src/RcppExports.cpp | 18 + src/scorep.cpp | 4 tests/testthat/test-likelihood.R | 10 vignettes |only 49 files changed, 2005 insertions(+), 781 deletions(-)
Title: Estimation and Hypothesis Testing for Threshold Regression
Description: Threshold regression models are also called two-phase regression, broken-stick regression, split-point regression, structural change models, and regression kink models. Methods for both continuous and discontinuous threshold models are included, but the support for the former is much greater. This package is described in Fong, Huang, Gilbert and Permar (2017) chngpt: threshold regression model estimation and inference, BMC Bioinformatics, in press, <DOI:10.1186/s12859-017-1863-x>.
Author: Youyi Fong [cre],
Zonglin He [aut],
Adam Elder [aut]
Maintainer: Youyi Fong <youyifong@gmail.com>
Diff between chngpt versions 2018.7-25 dated 2018-08-07 and 2018.10-17 dated 2018-10-30
chngpt-2018.10-17/chngpt/ChangeLog | 11 chngpt-2018.10-17/chngpt/DESCRIPTION | 15 chngpt-2018.10-17/chngpt/MD5 | 35 chngpt-2018.10-17/chngpt/NAMESPACE | 1 chngpt-2018.10-17/chngpt/R/chngpt.test.R | 20 chngpt-2018.10-17/chngpt/R/chngptm.R | 854 ++++++---- chngpt-2018.10-17/chngpt/R/performance.R | 4 chngpt-2018.10-17/chngpt/R/sim.chngpt.R | 34 chngpt-2018.10-17/chngpt/build/vignette.rds |binary chngpt-2018.10-17/chngpt/data/coef.0.ls.rda |binary chngpt-2018.10-17/chngpt/inst/doc/chngpt-vignette.pdf |binary chngpt-2018.10-17/chngpt/inst/unitTests/runit.chngpt.test.R | 98 - chngpt-2018.10-17/chngpt/inst/unitTests/runit.chngptm.linear.R |only chngpt-2018.10-17/chngpt/inst/unitTests/runit.chngptm.logistic.R |only chngpt-2018.10-17/chngpt/man/chngptm.Rd | 35 chngpt-2018.10-17/chngpt/man/sim.chngpt.Rd | 24 chngpt-2018.10-17/chngpt/src/fastgrid.cc |only chngpt-2018.10-17/chngpt/src/fastgrid2.cc |only chngpt-2018.10-17/chngpt/src/grid.cc |only chngpt-2018.10-17/chngpt/src/performance.cc |only chngpt-2018.10-17/chngpt/src/twoD.cc |only chngpt-2018.7-25/chngpt/inst/unitTests/runit.chngptm.R |only chngpt-2018.7-25/chngpt/src/chnpgt_boot.cc |only 23 files changed, 715 insertions(+), 416 deletions(-)
Title: Download Mexico City Pollution, Wind, and Temperature Data
Description: Tools for downloading hourly averages, daily maximums and minimums from each of the
pollution, wind, and temperature measuring stations or geographic zones in the Mexico City
metro area. The package also includes the locations of each of the stations and zones. See
<http://aire.cdmx.gob.mx/> for more information.
Author: Diego Valle-Jones [aut, cre]
Maintainer: Diego Valle-Jones <diego@diegovalle.net>
Diff between aire.zmvm versions 0.6.1 dated 2018-04-19 and 0.8.0 dated 2018-10-30
aire.zmvm-0.6.1/aire.zmvm/R/convert.R |only aire.zmvm-0.6.1/aire.zmvm/tests/testthat/test_convert.R |only aire.zmvm-0.8.0/aire.zmvm/DESCRIPTION | 12 - aire.zmvm-0.8.0/aire.zmvm/MD5 | 58 ++++-- aire.zmvm-0.8.0/aire.zmvm/NAMESPACE | 12 + aire.zmvm-0.8.0/aire.zmvm/NEWS.md | 26 ++ aire.zmvm-0.8.0/aire.zmvm/R/convert_to_imeca.R |only aire.zmvm-0.8.0/aire.zmvm/R/convert_to_index.R |only aire.zmvm-0.8.0/aire.zmvm/R/download_archives.R |only aire.zmvm-0.8.0/aire.zmvm/R/get_latest_imeca.R | 16 + aire.zmvm-0.8.0/aire.zmvm/R/get_station_data.R | 91 +++------- aire.zmvm-0.8.0/aire.zmvm/R/get_station_imeca.R | 11 - aire.zmvm-0.8.0/aire.zmvm/R/get_zone_imeca.R | 19 +- aire.zmvm-0.8.0/aire.zmvm/R/utils.R | 28 +-- aire.zmvm-0.8.0/aire.zmvm/man/convert_to_imeca.Rd | 13 - aire.zmvm-0.8.0/aire.zmvm/man/convert_to_index.Rd |only aire.zmvm-0.8.0/aire.zmvm/man/dot-clean_archive.Rd |only aire.zmvm-0.8.0/aire.zmvm/man/dot-convert_time.Rd |only aire.zmvm-0.8.0/aire.zmvm/man/dot-download_current_station_data.Rd |only aire.zmvm-0.8.0/aire.zmvm/man/dot-download_data.Rd |only aire.zmvm-0.8.0/aire.zmvm/man/dot-download_data_zone.Rd |only aire.zmvm-0.8.0/aire.zmvm/man/dot-download_old_station_data.Rd |only aire.zmvm-0.8.0/aire.zmvm/man/dot-get_archive_wsp.Rd |only aire.zmvm-0.8.0/aire.zmvm/man/dot-recode_pollutant.Rd |only aire.zmvm-0.8.0/aire.zmvm/man/dot-recode_unit.Rd |only aire.zmvm-0.8.0/aire.zmvm/man/dot-recode_unit_code.Rd |only aire.zmvm-0.8.0/aire.zmvm/man/download_24hr_average.Rd |only aire.zmvm-0.8.0/aire.zmvm/man/download_deposition.Rd |only aire.zmvm-0.8.0/aire.zmvm/man/download_lead.Rd |only aire.zmvm-0.8.0/aire.zmvm/man/download_meteorological.Rd |only aire.zmvm-0.8.0/aire.zmvm/man/download_pollution.Rd |only aire.zmvm-0.8.0/aire.zmvm/man/download_pressure.Rd |only aire.zmvm-0.8.0/aire.zmvm/man/download_radiation.Rd |only aire.zmvm-0.8.0/aire.zmvm/man/figures/README-unnamed-chunk-2-1.png |binary aire.zmvm-0.8.0/aire.zmvm/man/get_latest_imeca.Rd | 1 aire.zmvm-0.8.0/aire.zmvm/man/get_station_data.Rd | 11 - aire.zmvm-0.8.0/aire.zmvm/man/get_station_imeca.Rd | 1 aire.zmvm-0.8.0/aire.zmvm/man/get_station_month_data.Rd | 5 aire.zmvm-0.8.0/aire.zmvm/man/get_zone_imeca.Rd | 9 aire.zmvm-0.8.0/aire.zmvm/tests/testthat/test_convert_to_imeca.R |only aire.zmvm-0.8.0/aire.zmvm/tests/testthat/test_convert_to_index.R |only aire.zmvm-0.8.0/aire.zmvm/tests/testthat/test_download_archives.R |only aire.zmvm-0.8.0/aire.zmvm/tests/testthat/test_get_station_month_data.R | 16 - 43 files changed, 192 insertions(+), 137 deletions(-)
Title: Modern Nonparametric Tools for Two-Sample Quantile and
Distribution Comparisons
Description: Allows practitioners to determine (i) if two univariate distributions (which can be continuous, discrete, or even mixed) are equal, (ii) how two distributions differ (shape differences, e.g., location, scale, etc.), and (iii) where two distributions differ (at which quantiles), all using nonparametric LP statistics. The primary reference is Jungreis, D. and Mukhopadhyay, S. (2018, Technical Report).
Author: David Jungreis, Subhadeep Mukhopadhyay
Maintainer: David Jungreis <dbjungreis@gmail.com>
Diff between QDComparison versions 1.0 dated 2018-10-06 and 2.0 dated 2018-10-30
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- R/LP.QDC.R | 22 +++++++++++++++------- R/QTE.Out.R | 15 ++++++++++++--- man/LP.QDC.Rd | 17 ++++++++++++----- man/QDComparison-package.Rd | 2 +- 6 files changed, 49 insertions(+), 25 deletions(-)
Title: Mode Estimation
Description: Provides estimators of the mode of univariate unimodal
data or univariate unimodal distributions.
Author: Paul Poncet [aut, cre]
Maintainer: Paul Poncet <paulponcet@yahoo.fr>
Diff between modeest versions 2.1 dated 2012-10-15 and 2.3.2 dated 2018-10-30
modeest-2.1/modeest/CHANGES |only modeest-2.1/modeest/COPYING |only modeest-2.1/modeest/INDEX |only modeest-2.1/modeest/R/K.R |only modeest-2.1/modeest/R/as.numeric.mlv.R |only modeest-2.1/modeest/R/discrete.R |only modeest-2.1/modeest/R/distribMode.R |only modeest-2.1/modeest/R/kernel.R |only modeest-2.1/modeest/R/zzz.R |only modeest-2.1/modeest/man/Lientz.Rd |only modeest-2.1/modeest/man/discrete.Rd |only modeest-2.1/modeest/man/distribMode.Rd |only modeest-2.1/modeest/src |only modeest-2.3.2/modeest/DESCRIPTION | 30 + modeest-2.3.2/modeest/MD5 | 77 ++-- modeest-2.3.2/modeest/NAMESPACE | 133 +++++-- modeest-2.3.2/modeest/NEWS.md |only modeest-2.3.2/modeest/R/asselin.R | 62 +++ modeest-2.3.2/modeest/R/deal.ties.R | 23 - modeest-2.3.2/modeest/R/distrMode.R |only modeest-2.3.2/modeest/R/distributionsList.R |only modeest-2.3.2/modeest/R/grenander.R | 113 +++++- modeest-2.3.2/modeest/R/hrm.R | 100 ++++- modeest-2.3.2/modeest/R/hsm.R | 111 +++++- modeest-2.3.2/modeest/R/lientz.R | 161 +++++++-- modeest-2.3.2/modeest/R/meanshift.R |only modeest-2.3.2/modeest/R/methodsList.R |only modeest-2.3.2/modeest/R/mlv.R | 464 ++++++++++----------------- modeest-2.3.2/modeest/R/naive.R |only modeest-2.3.2/modeest/R/parzen.R | 166 ++++++--- modeest-2.3.2/modeest/R/reexports_statip.R |only modeest-2.3.2/modeest/R/skewness.R | 104 ++++-- modeest-2.3.2/modeest/R/tsybakov.R | 133 ++++++- modeest-2.3.2/modeest/R/venter.R | 120 ++++++ modeest-2.3.2/modeest/R/vieu.R | 105 ++++-- modeest-2.3.2/modeest/README.md |only modeest-2.3.2/modeest/man/asselin.Rd | 56 +-- modeest-2.3.2/modeest/man/distrMode.Rd |only modeest-2.3.2/modeest/man/grenander.Rd | 110 +++--- modeest-2.3.2/modeest/man/hrm.Rd | 110 +++--- modeest-2.3.2/modeest/man/hsm.Rd | 112 +++--- modeest-2.3.2/modeest/man/lientz.Rd |only modeest-2.3.2/modeest/man/meanshift.Rd |only modeest-2.3.2/modeest/man/mlv.Rd | 217 +++++------- modeest-2.3.2/modeest/man/modeest-package.Rd | 20 - modeest-2.3.2/modeest/man/naive.Rd | 75 ++-- modeest-2.3.2/modeest/man/parzen.Rd | 155 ++++----- modeest-2.3.2/modeest/man/reexports.Rd |only modeest-2.3.2/modeest/man/skewness.Rd | 108 ++---- modeest-2.3.2/modeest/man/tsybakov.Rd | 136 +++---- modeest-2.3.2/modeest/man/venter.Rd | 118 +++--- modeest-2.3.2/modeest/man/vieu.Rd | 74 ++-- 52 files changed, 1890 insertions(+), 1303 deletions(-)
Title: Manipulate MCMC Samples
Description: Functions and classes to store, manipulate and summarise
Monte Carlo Markov Chain (MCMC) samples.
Author: Joe Thorley [aut, cre] (<https://orcid.org/0000-0002-7683-4592>)
Maintainer: Joe Thorley <joe@poissonconsulting.ca>
Diff between mcmcr versions 0.0.1 dated 2018-04-13 and 0.0.2 dated 2018-10-30
mcmcr-0.0.1/mcmcr/tools |only mcmcr-0.0.2/mcmcr/DESCRIPTION | 18 ++++---- mcmcr-0.0.2/mcmcr/MD5 | 24 +++++------ mcmcr-0.0.2/mcmcr/NEWS.md | 11 +++-- mcmcr-0.0.2/mcmcr/R/combine-samples-n.R | 3 - mcmcr-0.0.2/mcmcr/R/utils.R | 2 mcmcr-0.0.2/mcmcr/README.md | 59 ++++++++++++++++------------ mcmcr-0.0.2/mcmcr/man/coef.Rd | 12 ++--- mcmcr-0.0.2/mcmcr/man/combine_dimensions.Rd | 3 - mcmcr-0.0.2/mcmcr/man/estimates.Rd | 17 ++++---- mcmcr-0.0.2/mcmcr/man/figures |only mcmcr-0.0.2/mcmcr/man/mcmcr-package.Rd | 14 +++++- mcmcr-0.0.2/mcmcr/man/parameters.Rd | 3 - 13 files changed, 96 insertions(+), 70 deletions(-)
Title: Presentations in the REPL
Description: Create presentations and display them inside the R 'REPL'
(Read-Eval-Print loop), aka the R console. Presentations can be written in
'RMarkdown' or any other text format. A set of convenient navigation options
as well as code evaluation during a presentation is provided. It is great
for tech talks with live coding examples and tutorials. While this is not a
replacement for standard presentation formats, it's old-school looks might
just be what sets it apart. This project has been inspired by the
'REPLesent' project for presentations in the 'Scala' 'REPL'.
Author: Sebastian Warnholz [aut, cre]
Maintainer: Sebastian Warnholz <wahani@gmail.com>
Diff between REPLesentR versions 0.2.0 dated 2018-10-16 and 0.3.0 dated 2018-10-30
DESCRIPTION | 6 +++--- MD5 | 11 ++++++----- NEWS |only inst/Introduction.md | 2 +- inst/Introduction.plain | 2 +- tests/testthat/test-Evaluate.R | 3 ++- tests/testthat/test-SlideDeck.R | 3 ++- 7 files changed, 15 insertions(+), 12 deletions(-)
Title: Classification Permutation Test
Description: Non-parametric test for equality of multivariate distributions. Trains a classifier to classify (multivariate) observations as coming from one of several distributions. If the classifier is able to classify the observations better than would be expected by chance (using permutation inference), then the null hypothesis that the distributions are equal is rejected.
Author: Johann Gagnon-Bartsch <johanngb@umich.edu>
Maintainer: Johann Gagnon-Bartsch <johanngb@umich.edu>
Diff between cpt versions 1.0 dated 2018-02-27 and 1.0.2 dated 2018-10-30
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- R/cpt.R | 4 ++-- R/getensemble.metric.R | 7 +++++++ R/getmetric.R | 6 ++++++ man/cpt-package.Rd | 4 ++-- 6 files changed, 26 insertions(+), 13 deletions(-)
Title: Adaptive Management Model Manager
Description: Helps enable adaptive management by codifying knowledge in the
form of models generated from numerous analyses and data sets. Facilitates
this process by storing all models and data sets in a single object that can
be updated and saved, thus tracking changes in knowledge through time. A shiny
application called AM Model Manager (modelMgr()) enables the use of these
functions via a GUI.
Author: Jon Katz <jonkatz4@gmail.com>, Therese Donovan <tdonovan@uvm.edu>
Maintainer: Jon Katz <jonkatz4@gmail.com>
Diff between AMModels versions 0.1.3 dated 2018-03-05 and 0.1.4 dated 2018-10-30
DESCRIPTION | 10 ++-- MD5 | 46 ++++++++++----------- NAMESPACE | 3 - R/AMModels-package.R | 1 R/grepAMModelLib.R | 23 +++++++++- R/insertAMModelLib.R | 6 +- R/methods-amModel.R | 1 R/methods-amModelLib.R | 1 R/rmModelsData.R | 19 ++++++++ build/vignette.rds |binary man/AMModels.Rd | 99 ++++++++++++++++++++-------------------------- man/amData.Rd | 34 ++++++--------- man/amModel.Rd | 32 +++++--------- man/amModelLib.Rd | 52 +++++++++++------------- man/getters.Rd | 72 ++++++++++++++++----------------- man/grepAMModelLib.Rd | 68 +++++++++++++------------------ man/insertAMModelLib.Rd | 53 ++++++++++-------------- man/lsModels.Rd | 54 +++++++++++-------------- man/methods-amModel.Rd | 52 ++++++++++++------------ man/methods-amModelLib.Rd | 50 +++++++++++------------ man/modelMgr.Rd | 5 -- man/mymodels.Rd | 7 ++- man/rmModel.Rd | 55 ++++++++++--------------- man/simCovariate.Rd | 27 ++++++------ 24 files changed, 378 insertions(+), 392 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-10-30 1.5.1
Title: Lag Penalized Weighted Correlation for Time Series Clustering
Description: Computes a time series distance measure for clustering based on weighted correlation and introduction of lags. The lags capture delayed responses in a time series dataset. The timepoints must be specified. T. Chandereng, A. Gitter (2018) <doi:10.1101/292615>.
Author: Thevaa Chandereng [aut, cre, cph]
(<https://orcid.org/0000-0003-4078-9176>),
Anthony Gitter [aut, cph] (<https://orcid.org/0000-0002-5324-9833>)
Maintainer: Thevaa Chandereng <chandereng@wisc.edu>
Diff between LPWC versions 0.99.3 dated 2018-06-04 and 0.99.4 dated 2018-10-30
DESCRIPTION | 31 ++++--- MD5 | 66 ++++++++-------- NAMESPACE | 18 +++- R/bestlag.R | 29 +++++-- R/comp_corr.R | 34 ++++++-- R/corr_bestlag.R | 24 ++++-- R/findC.R | 21 +++-- R/prep_data.R | 26 ++++-- R/score.R | 8 +- R/simdata.R | 2 R/weight.R | 7 + R/weight_lag.R | 5 + R/wt_corr.R | 6 + README.md | 6 + build/vignette.rds |binary inst/doc/LPWC.R | 8 +- inst/doc/LPWC.Rmd | 26 +++++- inst/doc/LPWC.html | 148 +++++++++++++++++++++---------------- man/best.lag.Rd | 14 ++- man/comp.corr.Rd | 22 ++++- man/corr.bestlag.Rd | 13 ++- man/findC.Rd | 10 +- man/prep.data.Rd | 8 +- man/score.Rd | 1 man/simdata.Rd | 2 man/weight.Rd | 1 man/weight.lag.Rd | 1 man/wt.corr.Rd | 1 tests/testthat/test_best_lag.R | 21 +++-- tests/testthat/test_corr_bestlag.R | 36 ++++++--- tests/testthat/test_findC.R | 7 + tests/testthat/test_weight.R | 1 tests/testthat/test_wt_corr.R | 1 vignettes/LPWC.Rmd | 26 +++++- 34 files changed, 426 insertions(+), 204 deletions(-)
Title: Variable Selection for Heterogeneous Populations
Description: Provides variable selection and estimation routines for models
with main effects stratified on multiple binary factors. The 'vennLasso' package
is an implementation of the method introduced in Huling, et al. (2017) <doi:10.1111/biom.12769>.
Author: Jared Huling [aut, cre] (<https://orcid.org/0000-0003-0670-4845>),
Muxuan Liang [ctb],
Yixuan Qiu [cph],
Gael Guennebaud [cph],
Ray Gardner [cph],
Jitse Niesen [cph]
Maintainer: Jared Huling <jaredhuling@gmail.com>
Diff between vennLasso versions 0.1.2 dated 2018-03-25 and 0.1.3 dated 2018-10-30
DESCRIPTION | 13 +++++++------ MD5 | 26 +++++++++++++------------- build/vignette.rds |binary inst/doc/using_the_vennLasso_package.pdf |binary man/genHierSparseBeta.Rd | 3 ++- man/genHierSparseData.Rd | 8 ++++---- man/oglasso.Rd | 17 +++++++++-------- man/plot.Rd | 5 +++-- man/plotVenn.Rd | 4 ++-- man/predict.Rd | 4 ++-- man/predict.cv.vennLasso.Rd | 4 ++-- man/vennLasso.Rd | 15 ++++++++------- src/Makevars | 5 ++++- src/Makevars.win | 3 ++- 14 files changed, 58 insertions(+), 49 deletions(-)
Title: An R Package for Creating Ternary Plots
Description: Plots ternary diagrams using the standard graphics functions.
An alternative to 'ggtern', which uses the 'ggplot2' family of plotting functions.
Author: Martin R. Smith [aut, cre, cph]
(<https://orcid.org/0000-0001-5660-1727>)
Maintainer: Martin R. Smith <martin.smith@durham.ac.uk>
Diff between Ternary versions 1.0.1 dated 2018-07-05 and 1.0.2 dated 2018-10-30
DESCRIPTION | 20 ++++---- MD5 | 28 +++++------ NEWS.md | 8 ++- R/TernaryPlot.R | 105 +++++++++++++++++++++++--------------------- R/data.R | 9 ++- README.md | 6 +- build/partial.rdb |binary inst/doc/Using-Ternary.Rmd | 2 inst/doc/Using-Ternary.html | 8 +-- man/TernaryCoords.Rd | 2 man/TernaryPlot.Rd | 63 ++++++++++++++------------ man/TernaryXRange.Rd | 2 man/cbPalette15.Rd | 5 +- man/cbPalette8.Rd | 4 - vignettes/Using-Ternary.Rmd | 2 15 files changed, 144 insertions(+), 120 deletions(-)
More information about temperatureresponse at CRAN
Permanent link
Title: Deterministic Computation of Text Box Metrics
Description: Unlike other tools that dynamically link to the 'Cairo'
stack, 'freetypeharfbuzz' is statically linked to specific
versions of the 'FreeType' and 'harfbuzz' libraries (2.9 and 1.7.6
respectively). This ensures deterministic computation of text box
extents for situations where reproducible results are crucial (for
instance unit tests of graphics).
Author: Lionel Henry [aut, cre],
RStudio [cph],
David Turner [aut] (FreeType library),
Robert Wilhelm [aut] (FreeType library),
Werner Wilhelm [aut] (FreeType library),
Behdad Esfahbod [aut] (Harfbuzz library),
Simon Hausmann [aut] (Harfbuzz library),
Martin Hosken [aut] (Harfbuzz library),
Jonathan Kew [aut] (Harfbuzz library),
Lars Knoll [aut] (Harfbuzz library),
Werner Lemberg [aut] (Harfbuzz library),
Roozbeh Pournader [aut] (Harfbuzz library),
Owen Taylor [aut] (Harfbuzz library),
David Turner [aut] (Harfbuzz library),
Red Hat [cph] (Harfbuzz library)
Maintainer: Lionel Henry <lionel@rstudio.com>
Diff between freetypeharfbuzz versions 0.2.4 dated 2018-10-21 and 0.2.5 dated 2018-10-30
freetypeharfbuzz-0.2.4/freetypeharfbuzz/tools/diffs/0001-Undefine-HB_PRINTF_FUNC.patch |only freetypeharfbuzz-0.2.4/freetypeharfbuzz/tools/diffs/0002-Remove-unnecessary-trailing-semi-colon.patch |only freetypeharfbuzz-0.2.4/freetypeharfbuzz/tools/diffs/0003-Initialise-offsets.patch |only freetypeharfbuzz-0.2.4/freetypeharfbuzz/tools/diffs/0004-Cast-to-void-before-memset.patch |only freetypeharfbuzz-0.2.4/freetypeharfbuzz/tools/diffs/0005-Silence-gcc-warning.patch |only freetypeharfbuzz-0.2.4/freetypeharfbuzz/tools/diffs/0006-Remove-flags-causing-warnings-on-Solaris.patch |only freetypeharfbuzz-0.2.4/freetypeharfbuzz/tools/diffs/0007-Silence-Solaris-warnings-about-symbol-hiding.patch |only freetypeharfbuzz-0.2.4/freetypeharfbuzz/tools/diffs/harfbuzz-flag.diff |only freetypeharfbuzz-0.2.4/freetypeharfbuzz/tools/diffs/harfbuzz-pkgconfig.diff |only freetypeharfbuzz-0.2.5/freetypeharfbuzz/DESCRIPTION | 6 - freetypeharfbuzz-0.2.5/freetypeharfbuzz/MD5 | 39 ++++++---- freetypeharfbuzz-0.2.5/freetypeharfbuzz/NEWS.md | 2 freetypeharfbuzz-0.2.5/freetypeharfbuzz/configure | 22 ++--- freetypeharfbuzz-0.2.5/freetypeharfbuzz/src/Makebuild | 14 ++- freetypeharfbuzz-0.2.5/freetypeharfbuzz/src/Makevars.in | 5 + freetypeharfbuzz-0.2.5/freetypeharfbuzz/tools/Makefile | 32 ++++---- freetypeharfbuzz-0.2.5/freetypeharfbuzz/tools/config |only freetypeharfbuzz-0.2.5/freetypeharfbuzz/tools/diffs/harfbuzz |only freetypeharfbuzz-0.2.5/freetypeharfbuzz/tools/m4 |only freetypeharfbuzz-0.2.5/freetypeharfbuzz/tools/version |only 20 files changed, 68 insertions(+), 52 deletions(-)
More information about freetypeharfbuzz at CRAN
Permanent link
Title: A Fast, Easy-to-Use Database Interface
Description: Provides select, insert, update, upsert, and delete database operations. Supports 'PostgreSQL', 'MySQL', 'SQLite', and more, and plays nicely with the 'DBI' package.
Author: Andrew Kane [aut, cre]
Maintainer: Andrew Kane <andrew@chartkick.com>
Diff between dbx versions 0.2.2 dated 2018-09-15 and 0.2.3 dated 2018-10-30
DESCRIPTION | 9 MD5 | 45 +- NAMESPACE | 2 NEWS.md | 6 R/helpers.R | 97 ++-- R/select.R | 41 + R/upsert.R | 20 README.md | 18 man/dbxSelect.Rd | 10 man/dbxUpsert.Rd | 4 tests/testthat/helper-run-data-type-tests.R |only tests/testthat/helper-run-delete-tests.R |only tests/testthat/helper-run-insert-tests.R |only tests/testthat/helper-run-select-tests.R |only tests/testthat/helper-run-tests.R | 577 ---------------------------- tests/testthat/helper-run-update-tests.R |only tests/testthat/helper-run-upsert-tests.R |only tests/testthat/helper-test-that.R |only tests/testthat/test-mariadb.R | 5 tests/testthat/test-mysql.R | 5 tests/testthat/test-odbc-mysql.R | 5 tests/testthat/test-odbc-postgres.R | 5 tests/testthat/test-odbc-sqlserver.R | 5 tests/testthat/test-postgres.R | 5 tests/testthat/test-postgresql.R | 5 tests/testthat/test-redshift.R | 5 tests/testthat/test-sqlite.R | 3 27 files changed, 189 insertions(+), 683 deletions(-)
Title: Breast Cancer Risk Assessment
Description: Functions provide risk projections of invasive breast cancer based on Gail model according to National Cancer Institute's Breast Cancer Risk Assessment Tool algorithm for specified race/ethnic groups and age intervals.
Author: Fanni Zhang
Maintainer: Fanni Zhang <zhangf@imsweb.com>
Diff between BCRA versions 2.0 dated 2018-04-25 and 2.1 dated 2018-10-30
DESCRIPTION | 8 - MD5 | 8 - NAMESPACE | 2 R/absolute.risk.R | 380 +++++++++++++++++++++++++++--------------------------- R/recode.check.R | 278 +++++++++++++++++++-------------------- 5 files changed, 338 insertions(+), 338 deletions(-)
Title: Bayesian Estimation of the Evolutionary Rate Matrix
Description: Estimates the evolutionary rate matrix (R) using Markov chain Monte Carlo (MCMC) as described in Caetano and Harmon (2017) <doi:10.1111/2041-210X.12826>. The package has functions to run MCMC chains, plot results, evaluate convergence, and summarize posterior distributions.
Author: Daniel Caetano [aut, cre],
Luke Harmon [aut]
Maintainer: Daniel Caetano <caetanods1@gmail.com>
Diff between ratematrix versions 1.0 dated 2018-06-10 and 1.1 dated 2018-10-30
ratematrix-1.0/ratematrix/cleanup |only ratematrix-1.0/ratematrix/configure |only ratematrix-1.0/ratematrix/configure.ac |only ratematrix-1.0/ratematrix/inst/doc/Making_prior_on_ratematrix.html |only ratematrix-1.0/ratematrix/inst/doc/Set_custom_starting_point.html |only ratematrix-1.0/ratematrix/src/Makevars.in |only ratematrix-1.1/ratematrix/DESCRIPTION | 6 ratematrix-1.1/ratematrix/MD5 | 66 ratematrix-1.1/ratematrix/NAMESPACE | 4 ratematrix-1.1/ratematrix/R/RcppExports.R | 16 ratematrix-1.1/ratematrix/R/fastSimmap.R |only ratematrix-1.1/ratematrix/R/makeDataTips.R |only ratematrix-1.1/ratematrix/R/multRegimeJointMCMC.R |only ratematrix-1.1/ratematrix/R/ratematrixJointMCMC.R |only ratematrix-1.1/ratematrix/R/ratematrixMCMC.R | 13 ratematrix-1.1/ratematrix/R/readMultRegimeMCMC.R | 5 ratematrix-1.1/ratematrix/R/testRatematrix.R | 3 ratematrix-1.1/ratematrix/README.md | 76 ratematrix-1.1/ratematrix/build/vignette.rds |binary ratematrix-1.1/ratematrix/data/centrarchidae.RData |binary ratematrix-1.1/ratematrix/inst/doc/Intro_on_the_package.R |only ratematrix-1.1/ratematrix/inst/doc/Intro_on_the_package.Rmd |only ratematrix-1.1/ratematrix/inst/doc/Intro_on_the_package.pdf |only ratematrix-1.1/ratematrix/inst/doc/Making_prior_on_ratematrix.R | 35 ratematrix-1.1/ratematrix/inst/doc/Making_prior_on_ratematrix.Rmd | 40 ratematrix-1.1/ratematrix/inst/doc/Making_prior_on_ratematrix.pdf |only ratematrix-1.1/ratematrix/inst/doc/Set_custom_starting_point.R | 10 ratematrix-1.1/ratematrix/inst/doc/Set_custom_starting_point.Rmd | 20 ratematrix-1.1/ratematrix/inst/doc/Set_custom_starting_point.pdf |only ratematrix-1.1/ratematrix/inst/extdata/corr.zero.RData |binary ratematrix-1.1/ratematrix/inst/extdata/intro_vignette.RData |only ratematrix-1.1/ratematrix/inst/extdata/mcmc.start.point.tutorial.RData |binary ratematrix-1.1/ratematrix/inst/extdata/norm.root.RData |binary ratematrix-1.1/ratematrix/inst/extdata/unif.root.RData |binary ratematrix-1.1/ratematrix/man/fastSimmap.Rd |only ratematrix-1.1/ratematrix/man/ratematrixJointMCMC.Rd |only ratematrix-1.1/ratematrix/man/testRatematrix.Rd | 4 ratematrix-1.1/ratematrix/src/Makevars |only ratematrix-1.1/ratematrix/src/Makevars.win | 2 ratematrix-1.1/ratematrix/src/MultRegimeMCMC.cpp | 1065 +++++++++- ratematrix-1.1/ratematrix/src/RcppExports.cpp | 126 + ratematrix-1.1/ratematrix/vignettes/Intro_on_the_package.Rmd |only ratematrix-1.1/ratematrix/vignettes/Making_prior_on_ratematrix.Rmd | 40 ratematrix-1.1/ratematrix/vignettes/Set_custom_starting_point.Rmd | 20 44 files changed, 1403 insertions(+), 148 deletions(-)
Title: Execute Native Scripts
Description: Run complex native scripts with a single command, similar to system commands.
Author: Sagie Gur-Ari [aut, cre]
Maintainer: Sagie Gur-Ari <sagiegurari@gmail.com>
Diff between scriptexec versions 0.2.3 dated 2018-10-13 and 0.3.0 dated 2018-10-30
DESCRIPTION | 6 +-- MD5 | 22 +++++++------ NAMESPACE | 1 NEWS.md | 5 +++ R/scriptexec.R | 40 ++++++++++++++++-------- README.md | 4 +- man/execute.Rd | 2 - man/generate_args_setup_script.Rd |only tests/testthat/helper.R | 14 ++++++++ tests/testthat/test_api_stability.R | 12 +++---- tests/testthat/test_execute.R | 2 - tests/testthat/test_generate_arg_setup_script.R |only tests/testthat/test_generate_env_setup_script.R | 17 +++------- 13 files changed, 78 insertions(+), 47 deletions(-)
Title: The Integration Between 'IBM COGNOS TM1' and R
Description: Useful functions to connect to 'TM1' <https://www.ibm.com/uk-en/marketplace/planning-and-analytics> instance from R via REST API. With the functions in the package, data can be imported from 'TM1' via mdx view or native view, data can be sent to 'TM1', processes and chores can be executed, and cube and dimension metadata information can be taken.
Author: Muhammed Ali Onder
Maintainer: Muhammed Ali Onder <muhammedalionder@gmail.com>
Diff between tm1r versions 1.1.0 dated 2018-10-23 and 1.1.1 dated 2018-10-30
tm1r-1.1.0/tm1r/R/tm1_create_dimension_element.R |only tm1r-1.1.0/tm1r/R/tm1_delete_dimension_element.R |only tm1r-1.1.0/tm1r/man/tm1_create_dimension_element.Rd |only tm1r-1.1.0/tm1r/man/tm1_delete_dimension_element.Rd |only tm1r-1.1.1/tm1r/DESCRIPTION | 6 +++--- tm1r-1.1.1/tm1r/MD5 | 18 +++++++++++------- tm1r-1.1.1/tm1r/R/tm1_create_element.R |only tm1r-1.1.1/tm1r/R/tm1_create_subset.R |only tm1r-1.1.1/tm1r/R/tm1_delete_element.R |only tm1r-1.1.1/tm1r/R/tm1_delete_subset.R |only tm1r-1.1.1/tm1r/R/tm1_get_mdx_view.R | 4 ++-- tm1r-1.1.1/tm1r/man/tm1_create_element.Rd |only tm1r-1.1.1/tm1r/man/tm1_create_subset.Rd |only tm1r-1.1.1/tm1r/man/tm1_delete_element.Rd |only tm1r-1.1.1/tm1r/man/tm1_delete_subset.Rd |only tm1r-1.1.1/tm1r/man/tm1_send_dataset.Rd | 20 +++++++++++++++----- 16 files changed, 31 insertions(+), 17 deletions(-)
Title: Species Distribution and Stability Future Models
Description: Functions for post processing the outcomes of ecological niche models. It further include methods to build stability maps based on species distribution models under climate change projections and to reduce environmental data.
Author: P. Joser Atauchi [aut, cre]
Maintainer: P. Joser Atauchi <patauchi@gmail.com>
Diff between sdStaf versions 1.0.0 dated 2018-10-03 and 1.0.2 dated 2018-10-30
DESCRIPTION | 8 ++-- MD5 | 21 +++++------ NEWS.md | 6 ++- R/allFunctions.R | 59 +++++++++++++++++++++++++++---- R/stability.R | 90 ++++++++++++++++++++++++------------------------ README.md |only inst/doc/reduce.html | 6 +-- inst/doc/stability.R | 2 - inst/doc/stability.Rmd | 2 - inst/doc/stability.html | 6 +-- man/stability.Rd | 50 ++++++++++++-------------- vignettes/stability.Rmd | 2 - 12 files changed, 149 insertions(+), 103 deletions(-)
Title: Summarizing Distributions of Latent Structures
Description: Summaries of distributions on clusterings and feature allocations are provided. Specifically, point estimates are obtained by the sequentially-allocated latent structure optimization (SALSO) algorithm to minimize squared error loss, absolute error loss, Binder loss, or the lower bound of the variation of information loss. Clustering uncertainty can be assessed with the confidence calculations and the associated plot.
Author: David B. Dahl [aut, cre],
Peter Müller [aut]
Maintainer: David B. Dahl <dahl@stat.byu.edu>
Diff between sdols versions 1.6 dated 2018-06-29 and 1.7 dated 2018-10-30
sdols-1.6/sdols/R/scalaConvert.featureAllocation.R |only sdols-1.6/sdols/inst/java/scala-2.10 |only sdols-1.6/sdols/inst/java/scala-2.11/sdols.jar |only sdols-1.6/sdols/inst/java/scala-2.12/sdols.jar |only sdols-1.6/sdols/java/sdols-sources.jar |only sdols-1.6/sdols/man/scalaConvert.featureAllocation.Rd |only sdols-1.7/sdols/DESCRIPTION | 12 ++-- sdols-1.7/sdols/MD5 | 43 +++++++--------- sdols-1.7/sdols/NAMESPACE | 1 sdols-1.7/sdols/NEWS | 4 + sdols-1.7/sdols/R/confidence.R | 4 + sdols-1.7/sdols/R/dlso.R | 18 +++--- sdols-1.7/sdols/R/expectedPairwiseAllocationMatrix.R | 8 ++ sdols-1.7/sdols/R/latentStructureFit.R | 6 +- sdols-1.7/sdols/R/onLoad.R | 13 +++- sdols-1.7/sdols/R/plot.sdols.confidence.R | 4 + sdols-1.7/sdols/R/salso.R | 10 ++- sdols-1.7/sdols/R/scalaPush.clustering.R |only sdols-1.7/sdols/R/scalaPush.featureAllocation.R |only sdols-1.7/sdols/inst/java/scala-2.11/sdols_2.11-1.7.jar |only sdols-1.7/sdols/inst/java/scala-2.12/sdols_2.12-1.7.jar |only sdols-1.7/sdols/java/sdols_2.12-1.7-sources.jar |only sdols-1.7/sdols/man/confidence.Rd | 4 + sdols-1.7/sdols/man/dlso.Rd | 8 ++ sdols-1.7/sdols/man/expectedPairwiseAllocationMatrix.Rd | 4 + sdols-1.7/sdols/man/latentStructureFit.Rd | 4 + sdols-1.7/sdols/man/plot.sdols.confidence.Rd | 4 + sdols-1.7/sdols/man/salso.Rd | 12 ++-- 28 files changed, 105 insertions(+), 54 deletions(-)
Title: R Package Installation from Remote Repositories, Including
'GitHub'
Description: Download and install R packages stored in 'GitHub',
'BitBucket', or plain 'subversion' or 'git' repositories. This package
is a lightweight replacement of the 'install_*' functions in 'devtools'.
Indeed most of the code was copied over from 'devtools'.
Author: Gábor Csárdi [aut, cre],
Hadley Wickham [aut],
Winston Chang [aut],
Jim Hester [aut],
RStudio [cph],
Martin Morgan [aut],
Dan Tenenbaum [aut],
Mango Solutions [cph]
Maintainer: Gábor Csárdi <csardi.gabor@gmail.com>
Diff between remotes versions 2.0.1 dated 2018-10-19 and 2.0.2 dated 2018-10-30
DESCRIPTION | 6 ++-- MD5 | 42 +++++++++++++++--------------- NEWS.md | 20 +++++++++++++- R/decompress.R | 5 ++- R/deps.R | 12 +++++--- R/github.R | 3 -- R/install-bitbucket.R | 2 - R/install-remote.R | 28 ++++++++++++++++---- R/install-url.R | 2 - R/install-version.R | 11 +++++++ R/install.R | 11 +++++++ R/json.R | 8 ++--- README.md | 7 ++++- inst/README.markdown | 7 ++++- inst/doc/dependencies.html | 6 +--- tests/testthat/test-decompress.R | 32 +++++++++++++++++++++++ tests/testthat/test-deps.R | 10 +++---- tests/testthat/test-github.R | 9 ++++++ tests/testthat/test-install-version.R | 24 ++++++++++++++--- tests/testthat/test-install.R | 23 ++++++++++++++++ tests/testthat/test-json.R | 47 ++++++++++++++++++++++++++++++++++ tests/testthat/test-utils.R | 7 ++--- 22 files changed, 257 insertions(+), 65 deletions(-)
Title: Detecting Politeness Features in Text
Description: Detecting markers of politeness in English natural language. This package allows researchers to easily visualize and quantify politeness between groups of documents. This package combines prior research on the linguistic markers of politeness (Brown & Levinson, 1987 <http://psycnet.apa.org/record/1987-97641-000>; Danescu-Niculescu-Mizil et al., 2013 <arXiv:1306.6078>; Voigt et al., 2017 <doi:10.1073/pnas.1702413114>). We thank the Spencer Foundation, the Hewlett Foundation, and Harvard's Institute for Quantitative Social Science for support.
Author: Mike Yeomans, Alejandro Kantor, Dustin Tingley
Maintainer: Mike Yeomans <yeomans@fas.harvard.edu>
Diff between politeness versions 0.2.5 dated 2018-10-26 and 0.2.6 dated 2018-10-30
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/politeness.R | 14 +++++++------- inst/doc/politeness.html | 16 ++++++++-------- 4 files changed, 21 insertions(+), 21 deletions(-)
Title: Data Management and Analysis of Tests
Description: A system for the management, assessment, and psychometric analysis of data from educational and psychological tests.
Developed at Cito, The Netherlands, with subsidy from the Dutch Ministry of Education, Culture, and Science.
Author: Gunter Maris, Timo Bechger, Jesse Koops, Ivailo Partchev
Maintainer: Ivailo Partchev <partchev@gmail.com>
Diff between dexter versions 0.8.1 dated 2018-08-20 and 0.8.2 dated 2018-10-30
DESCRIPTION | 6 MD5 | 113 +-- NAMESPACE | 3 NEWS | 10 R/ability.R | 58 - R/anon.R | 1068 ------------------------------ R/anon_calibration.R |only R/anon_plausible_values.R |only R/d3c.R | 4 R/data_selection.R | 5 R/dexter.R | 75 +- R/dif.R | 59 - R/enorm.R | 559 ++++++++++----- R/equating.R | 5 R/individual_differences.R | 3 R/interaction_model.R | 180 ++--- R/misc.R | 9 R/plausible_scores.R | 3 R/plausible_values.R | 28 R/plots.R | 104 +- R/profile_analysis.R | 4 R/reparam.R |only R/shine.R | 11 R/tia.R | 3 inst/doc/Equating.R | 2 inst/doc/Equating.Rmd | 2 inst/doc/Equating.html | 20 inst/doc/Plausible_Values.html | 26 inst/doc/Test_Individual_differences.R | 24 inst/doc/Test_Individual_differences.Rmd | 24 inst/doc/Test_Individual_differences.html | 21 inst/doc/data_management.html | 4 inst/doc/dexter.R | 4 inst/doc/dexter.Rmd | 4 inst/doc/dexter.html | 12 inst/doc/profile-plots.R | 2 inst/doc/profile-plots.Rmd | 2 inst/doc/profile-plots.html | 5 man/DIF.Rd | 4 man/ability.Rd | 6 man/coef.prms.Rd | 13 man/create3DC.Rd | 2 man/dexter-package.Rd |only man/distractor_plot.Rd | 10 man/fit_enorm.Rd | 3 man/get_item_properties.Rd | 2 man/information.Rd |only man/plausible_values.Rd | 8 man/plot.rim.Rd | 8 man/start_new_project.Rd | 3 src/packagename_init.c | 43 - src/roger.c | 194 ++--- src/roger.h | 2 tests/testthat/test_ability.R | 16 tests/testthat/test_enorm.R | 2 vignettes/Equating.Rmd | 2 vignettes/Test_Individual_differences.Rmd | 24 vignettes/dexter.Rmd | 4 vignettes/dexter.bib | 10 vignettes/profile-plots.Rmd | 2 60 files changed, 1025 insertions(+), 1795 deletions(-)
Title: Bayesian Variable Selection and Model Averaging using Bayesian
Adaptive Sampling
Description: Package for Bayesian Variable Selection and Model Averaging in linear models and
generalized linear models using stochastic or
deterministic sampling without replacement from posterior
distributions. Prior distributions on coefficients are
from Zellner's g-prior or mixtures of g-priors
corresponding to the Zellner-Siow Cauchy Priors or the
mixture of g-priors from Liang et al (2008)
<DOI:10.1198/016214507000001337>
for linear models or mixtures of g-priors in GLMs of Li and Clyde (2018)
<arXiv:1503.06913>. Other model
selection criteria include AIC, BIC and Empirical Bayes estimates of g.
Sampling probabilities may be updated based on the sampled models
using Sampling w/out Replacement or an efficient MCMC algorithm
samples models using the BAS tree structure as an efficient hash table.
Uniform priors over all models or beta-binomial prior distributions on
model size are allowed, and for large p truncated priors on the model
space may be used. The user may force variables to always be included.
Details behind the sampling algorithm are provided in
Clyde, Ghosh and Littman (2010) <DOI:10.1198/jcgs.2010.09049>.
This material is based upon work supported by the National Science
Foundation under Grant DMS-1106891. Any opinions, findings, and
conclusions or recommendations expressed in this material are those of
the author(s) and do not necessarily reflect the views of the
National Science Foundation.
Author: Merlise Clyde [aut, cre, cph] (<https://orcid.org/-5469>),
Michael Littman [ctb],
Quanli Wang [ctb],
Joyee Ghosh [ctb],
Yingbo Li [ctb]
Maintainer: Merlise Clyde <clyde@duke.edu>
Diff between BAS versions 1.5.2 dated 2018-10-25 and 1.5.3 dated 2018-10-30
DESCRIPTION | 8 +- MD5 | 75 ++++++++++++------------- NEWS.md | 14 ++++ R/BAS-package.R | 4 - R/bas_glm.R | 4 - R/bas_lm.R | 24 +++++--- R/diagnostics.R | 2 R/model_priors.R | 14 ++-- R/outliers.R | 2 R/plot.R | 5 + R/predict.R | 6 +- inst/doc/BAS-vignette.Rmd | 2 inst/doc/BAS-vignette.html | 126 +++++++++++++++++++++---------------------- man/BAS.Rd | 4 - man/Bayes.outlier.Rd | 2 man/Bernoulli.Rd | 4 - man/bas.glm.Rd | 4 - man/bas.lm.Rd | 19 +++--- man/beta.binomial.Rd | 4 - man/diagnostics.Rd | 2 man/figures |only man/plot.Rd | 5 + man/predict.bas.Rd | 4 - man/predict.basglm.Rd | 2 man/tr.beta.binomial.Rd | 2 man/tr.poisson.Rd | 2 man/tr.power.prior.Rd | 2 src/ZS_approx_null_np.c | 8 -- src/bas.h | 4 - src/bayesreg.c | 14 +++- src/glm_deterministic.c | 2 src/init.c | 12 ++-- src/lm_deterministic.c | 33 +++++++++-- src/lm_mcmc.c | 16 +++-- src/lm_mcmcbas.c | 28 ++------- src/lm_sampleworep.c | 12 ++-- src/mem.c | 1 tests/testthat/test-bas-lm.R | 6 +- vignettes/BAS-vignette.Rmd | 2 39 files changed, 262 insertions(+), 218 deletions(-)
Title: Simple and Scalable Statistical Modelling in R
Description: Write statistical models in R and fit them by MCMC on CPUs and GPUs, using Google TensorFlow (see <https://greta-dev.github.io/greta> for more information).
Author: Nick Golding [aut, cre] (<https://orcid.org/0000-0001-8916-5570>),
Simon Dirmeier [ctb],
Adam Fleischhacker [ctb],
Shirin Glander [ctb],
Martin Ingram [ctb],
Lee Hazel [ctb],
Tiphaine Martin [ctb],
Matt Mulvahill [ctb],
Michael Quinn [ctb],
David Smith [ctb],
Paul Teetor [ctb],
Jian Yen [ctb]
Maintainer: Nick Golding <nick.golding.research@gmail.com>
Diff between greta versions 0.2.3 dated 2018-01-22 and 0.3.0 dated 2018-10-30
greta-0.2.3/greta/NEWS |only greta-0.2.3/greta/inst/doc/technical_details.R |only greta-0.2.3/greta/inst/doc/technical_details.Rmd |only greta-0.2.3/greta/inst/doc/technical_details.html |only greta-0.2.3/greta/tests/testthat/Rplots.pdf |only greta-0.2.3/greta/tests/testthat/test_transformations.R |only greta-0.2.3/greta/vignettes/examples |only greta-0.2.3/greta/vignettes/technical_details.Rmd |only greta-0.3.0/greta/DESCRIPTION | 67 greta-0.3.0/greta/MD5 | 181 - greta-0.3.0/greta/NAMESPACE | 84 greta-0.3.0/greta/NEWS.md |only greta-0.3.0/greta/R/as_data.R | 31 greta-0.3.0/greta/R/calculate.R |only greta-0.3.0/greta/R/callbacks.R |only greta-0.3.0/greta/R/dag_class.R | 594 ++-- greta-0.3.0/greta/R/distribution.R | 69 greta-0.3.0/greta/R/extract_replace_combine.R | 383 ++ greta-0.3.0/greta/R/functions.R | 922 ++++-- greta-0.3.0/greta/R/greta_array_class.R | 201 - greta-0.3.0/greta/R/greta_model_class.R | 296 +- greta-0.3.0/greta/R/inference.R | 1007 +++++-- greta-0.3.0/greta/R/inference_class.R |only greta-0.3.0/greta/R/internals.R | 15 greta-0.3.0/greta/R/joint.R |only greta-0.3.0/greta/R/mixture.R |only greta-0.3.0/greta/R/node_class.R | 112 greta-0.3.0/greta/R/node_types.R | 353 +- greta-0.3.0/greta/R/operators.R | 129 greta-0.3.0/greta/R/optimisers.R |only greta-0.3.0/greta/R/overloaded.R | 2 greta-0.3.0/greta/R/package.R | 30 greta-0.3.0/greta/R/probability_distributions.R | 1431 +++++----- greta-0.3.0/greta/R/progress_bar.R | 41 greta-0.3.0/greta/R/samplers.R | 277 - greta-0.3.0/greta/R/structures.R | 49 greta-0.3.0/greta/R/tf_functions.R | 506 ++- greta-0.3.0/greta/R/transforms.R | 74 greta-0.3.0/greta/R/unknowns_class.R | 24 greta-0.3.0/greta/R/utils.R | 1055 ++++++- greta-0.3.0/greta/R/variable.R | 6 greta-0.3.0/greta/build/vignette.rds |binary greta-0.3.0/greta/inst/doc/example_models.R | 545 +++ greta-0.3.0/greta/inst/doc/example_models.Rmd | 158 + greta-0.3.0/greta/inst/doc/example_models.html | 987 +++++- greta-0.3.0/greta/inst/doc/get_started.R | 210 + greta-0.3.0/greta/inst/doc/get_started.Rmd | 175 - greta-0.3.0/greta/inst/doc/get_started.html | 457 +-- greta-0.3.0/greta/inst/examples |only greta-0.3.0/greta/man/as_data.Rd | 14 greta-0.3.0/greta/man/calculate.Rd |only greta-0.3.0/greta/man/distribution.Rd | 7 greta-0.3.0/greta/man/distributions.Rd | 142 greta-0.3.0/greta/man/extract-replace-combine.Rd | 20 greta-0.3.0/greta/man/functions.Rd | 53 greta-0.3.0/greta/man/greta.Rd | 8 greta-0.3.0/greta/man/inference.Rd | 278 + greta-0.3.0/greta/man/internals.Rd | 2 greta-0.3.0/greta/man/joint.Rd |only greta-0.3.0/greta/man/mixture.Rd |only greta-0.3.0/greta/man/model.Rd | 41 greta-0.3.0/greta/man/operators.Rd | 22 greta-0.3.0/greta/man/optimisers.Rd |only greta-0.3.0/greta/man/overloaded.Rd | 36 greta-0.3.0/greta/man/samplers.Rd |only greta-0.3.0/greta/man/structures.Rd | 9 greta-0.3.0/greta/man/transforms.Rd | 37 greta-0.3.0/greta/tests/testthat.R | 1 greta-0.3.0/greta/tests/testthat/helpers.R | 641 +++- greta-0.3.0/greta/tests/testthat/test_as_data.R | 40 greta-0.3.0/greta/tests/testthat/test_calculate.R |only greta-0.3.0/greta/tests/testthat/test_distributions.R | 1090 ++++--- greta-0.3.0/greta/tests/testthat/test_extract_replace_combine.R | 513 ++- greta-0.3.0/greta/tests/testthat/test_functions.R | 268 + greta-0.3.0/greta/tests/testthat/test_greta_array_class.R | 57 greta-0.3.0/greta/tests/testthat/test_inference.R | 521 +++ greta-0.3.0/greta/tests/testthat/test_joint.R |only greta-0.3.0/greta/tests/testthat/test_misc.R | 176 - greta-0.3.0/greta/tests/testthat/test_mixture.R |only greta-0.3.0/greta/tests/testthat/test_operators.R | 34 greta-0.3.0/greta/tests/testthat/test_posteriors.R |only greta-0.3.0/greta/tests/testthat/test_representations.R |only greta-0.3.0/greta/tests/testthat/test_syntax.R | 81 greta-0.3.0/greta/tests/testthat/test_transforms.R |only greta-0.3.0/greta/tests/testthat/test_truncated.R | 1020 +++---- greta-0.3.0/greta/vignettes/example_models.Rmd | 158 + greta-0.3.0/greta/vignettes/figures/coef_graph.png |binary greta-0.3.0/greta/vignettes/figures/full_graph.png |binary greta-0.3.0/greta/vignettes/figures/likelihood_graph.png |binary greta-0.3.0/greta/vignettes/get_started.Rmd | 175 - 90 files changed, 10874 insertions(+), 5041 deletions(-)