Title: Functional Data Sets
Description: Functional data sets.
Author: Han Lin Shang and Rob J Hyndman
Maintainer: Han Lin Shang <hanlin.shang@anu.edu.au>
Diff between fds versions 1.7 dated 2013-08-22 and 1.8 dated 2018-10-31
CHANGELOG | 6 ++++++ DESCRIPTION | 17 ++++++++--------- MD5 | 18 +++++++++--------- NAMESPACE | 2 ++ R/read.hmd.R | 2 +- man/Cancerrate.Rd | 2 +- man/Fat.Rd | 2 +- man/Spanishmigration.Rd | 2 +- man/Yieldcurve.Rd | 2 +- man/fds-package.Rd | 2 +- 10 files changed, 31 insertions(+), 24 deletions(-)
Title: Archive and Unarchive Databases Using Flat Files
Description: Flat text files provide a robust, compressible, and portable
way to store tables from databases. This package provides convenient
functions for exporting tables from relational database connections
into compressed text files and streaming those text files back into
a database without requiring the whole table to fit in working memory.
Author: Carl Boettiger [aut, cre, cph]
(<https://orcid.org/0000-0002-1642-628X>),
Richard FitzJohn [ctb]
Maintainer: Carl Boettiger <cboettig@gmail.com>
Diff between arkdb versions 0.0.4 dated 2018-09-27 and 0.0.5 dated 2018-10-31
DESCRIPTION | 6 ++--- MD5 | 10 ++++---- NEWS.md | 7 ++++++ R/ark.R | 12 ++++++++-- README.md | 24 ++++++++++----------- inst/doc/arkdb.html | 58 ++++++++++++++++++++++++++-------------------------- 6 files changed, 65 insertions(+), 52 deletions(-)
Title: Restricted Statistical Estimation and Inference for Linear
Models
Description: Allow for easy-to-use testing or evaluating of linear equality and inequality
restrictions about parameters and effects in (generalized) linear statistical models.
Author: Leonard Vanbrabant [aut, cre],
Yves Rosseel [ctb]
Maintainer: Leonard Vanbrabant <Leonard.Vanbrabant@Ugent.be>
Diff between restriktor versions 0.1-80.811 dated 2018-09-28 and 0.1-80.911 dated 2018-10-31
DESCRIPTION | 6 MD5 | 12 R/conTest.R | 28 - R/con_goric.R | 743 +++++++++++++++++++++++----------------------- README | 2 inst/NEWS | 79 ++-- man/restriktor-package.rd | 4 7 files changed, 440 insertions(+), 434 deletions(-)
Title: Adjusted Relative Risk from Logistic Regression
Description: Adjusted odds ratio conditional on potential confounders can be directly obtained from logistic regression. However, those adjusted odds ratios have been widely incorrectly interpreted as a relative risk. As relative risk is often of interest in public health, we provide a simple code to return adjusted relative risks from logistic regression model under potential confounders.
Author: Youjin Lee
Maintainer: Youjin Lee <ylee160@jhu.edu>
Diff between logisticRR versions 0.1.0 dated 2018-10-08 and 0.2.0 dated 2018-10-31
DESCRIPTION | 8 - MD5 | 28 +++--- NAMESPACE | 5 + R/logisticRR.R | 2 R/multiRR.R |only R/multinRR.R |only R/nominalRR.R | 2 README.md | 55 ++++++++++-- inst/doc/logisticRR.R | 23 +++++ inst/doc/logisticRR.Rmd | 133 +++++++++++++++++++++++++----- inst/doc/logisticRR.html | 208 ++++++++++++++++++++++++++++++----------------- man/multiRR.Rd |only man/multinRR.Rd |only man/printmRR.Rd |only man/printmnRR.Rd |only tests/testthat.R | 1 tests/testthat/testglm.R | 18 ++++ vignettes/logisticRR.Rmd | 133 +++++++++++++++++++++++++----- 18 files changed, 482 insertions(+), 134 deletions(-)
Title: Randomization Tests
Description: A collection of randomization tests, data sets and examples. The current version focuses on two testing problems and their implementation in empirical work. First, it facilitates the empirical researcher to test for particular hypotheses, such as comparisons of means, medians, and variances from k populations using robust permutation tests, which asymptotic validity holds under very weak assumptions, while retaining the exact rejection probability in finite samples when the underlying distributions are identical. Second, the description and implementation of a permutation test for testing the continuity assumption of the baseline covariates in the sharp regression discontinuity design (RDD) as in Canay and Kamat (2017) <https://goo.gl/UZFqt7>. More specifically, it allows the user to select a set of covariates and test the aforementioned hypothesis using a permutation test based on the Cramer-von Miss test statistic. Graphical inspection of the empirical CDF and histograms for the variables of interest is also supported in the package.
Author: Mauricio Olivares-Gonzalez [aut, cre],
Ignacio Sarmiento-Barbieri [aut]
Maintainer: Mauricio Olivares-Gonzalez <maurice.olivares@gmail.com>
Diff between RATest versions 0.1.2 dated 2018-01-22 and 0.1.3 dated 2018-10-31
RATest-0.1.2/RATest/man/summary.RPT.Rd |only RATest-0.1.3/RATest/DESCRIPTION | 11 - RATest-0.1.3/RATest/MD5 | 20 +- RATest-0.1.3/RATest/NAMESPACE | 1 RATest-0.1.3/RATest/R/RPT.R | 182 +++++++++++++++++---- RATest-0.1.3/RATest/R/summary.RPT.R | 105 +++--------- RATest-0.1.3/RATest/README.md | 7 RATest-0.1.3/RATest/build/vignette.rds |binary RATest-0.1.3/RATest/inst/doc/Permutation_Tests.pdf |only RATest-0.1.3/RATest/inst/doc/RDperm.pdf |binary RATest-0.1.3/RATest/man/RPT.Rd | 35 ++-- RATest-0.1.3/RATest/man/summary.RDperm.Rd | 4 12 files changed, 229 insertions(+), 136 deletions(-)
Title: Hypothesis Testing and Power Calculations for Comparing
Metagenomic Samples from HMP
Description: Using Dirichlet-Multinomial distribution to provide several functions for formal hypothesis testing, power and sample size calculations for human microbiome experiments.
Author: Patricio S. La Rosa, Elena Deych, Sharina Carter, Berkley Shands, Dake Yang, William D. Shannon
Maintainer: Berkley Shands <rpackages@biorankings.com>
Diff between HMP versions 1.5.1 dated 2017-12-20 and 1.6 dated 2018-10-31
HMP-1.5.1/HMP/R/DM.Rpart.Perm.R |only HMP-1.5.1/HMP/R/calcRpartPval.R |only HMP-1.5.1/HMP/R/plotRpartPerm.R |only HMP-1.5.1/HMP/R/pruneRpart.R |only HMP-1.5.1/HMP/man/DM.Rpart.Perm.Rd |only HMP-1.6/HMP/DESCRIPTION | 10 +-- HMP-1.6/HMP/MD5 | 91 +++++++++++++++---------------- HMP-1.6/HMP/NEWS | 18 ++++++ HMP-1.6/HMP/R/DM.Rpart.Base.R |only HMP-1.6/HMP/R/DM.Rpart.CV.Consensus.R |only HMP-1.6/HMP/R/DM.Rpart.CV.R |only HMP-1.6/HMP/R/DM.Rpart.R | 18 +++--- HMP-1.6/HMP/R/Est.PI.R | 82 +++++++++++++++++---------- HMP-1.6/HMP/R/Gen.Alg.R | 7 +- HMP-1.6/HMP/R/Kullback.Leibler.R | 10 +-- HMP-1.6/HMP/R/gaScoring.R | 7 +- HMP-1.6/HMP/R/getBC.R | 6 ++ HMP-1.6/HMP/R/rpartCI.R |only HMP-1.6/HMP/R/rpartCS.R |only HMP-1.6/HMP/R/rpartCV.R |only HMP-1.6/HMP/R/rpartInit.R | 2 HMP-1.6/HMP/man/Barchart.data.Rd | 2 HMP-1.6/HMP/man/C.alpha.multinomial.Rd | 2 HMP-1.6/HMP/man/DM.MoM.Rd | 2 HMP-1.6/HMP/man/DM.Rpart.Rd | 45 +++++++++++++-- HMP-1.6/HMP/man/Data.filter.Rd | 2 HMP-1.6/HMP/man/Dirichlet.multinomial.Rd | 2 HMP-1.6/HMP/man/Est.Pi.Rd | 2 HMP-1.6/HMP/man/Gen.Alg.Consensus.Rd | 2 HMP-1.6/HMP/man/Gen.Alg.Rd | 7 +- HMP-1.6/HMP/man/HMP-internal.Rd | 50 ++++++++--------- HMP-1.6/HMP/man/HMP-package.Rd | 2 HMP-1.6/HMP/man/Kullback.Leibler.Rd | 3 - HMP-1.6/HMP/man/MC.Xdc.statistics.Rd | 2 HMP-1.6/HMP/man/MC.Xmc.statistics.Rd | 2 HMP-1.6/HMP/man/MC.Xmcupo.statistics.Rd | 2 HMP-1.6/HMP/man/MC.Xoc.statistics.Rd | 2 HMP-1.6/HMP/man/MC.Xsc.statistics.Rd | 2 HMP-1.6/HMP/man/MC.ZT.statistics.Rd | 2 HMP-1.6/HMP/man/Multinomial.Rd | 2 HMP-1.6/HMP/man/Plot.MDS.Rd | 2 HMP-1.6/HMP/man/Plot.Pi.Rd | 2 HMP-1.6/HMP/man/Plot.RM.Barchart.Rd | 2 HMP-1.6/HMP/man/Plot.RM.Dotplot.Rd | 2 HMP-1.6/HMP/man/Test.Paired.Rd | 2 HMP-1.6/HMP/man/Xdc.sevsample.Rd | 2 HMP-1.6/HMP/man/Xmc.sevsample.Rd | 2 HMP-1.6/HMP/man/Xmcupo.effectsize.Rd | 2 HMP-1.6/HMP/man/Xmcupo.sevsample.Rd | 2 HMP-1.6/HMP/man/Xoc.sevsample.Rd | 5 - HMP-1.6/HMP/man/Xsc.onesample.Rd | 2 HMP-1.6/HMP/man/formatDataSets.Rd | 2 52 files changed, 220 insertions(+), 193 deletions(-)
Title: Models for Spatially Correlated Data
Description: Fits the autologistic model described in Besag's famous 1974 paper on auto- models <http://www.jstor.org/stable/2984812>. Fits a multicategory generalization of the autologistic model when there are more than 2 response categories. Provides support for both asymptotic and bootstrap confidence intervals. For full model descriptions and a guide to the use of this package, please see the vignette.
Author: Stephen Berg [aut, cre], Rao Fu [aut], Jun Zhu [ths]
Maintainer: Stephen Berg <saberg2@wisc.edu>
Diff between automultinomial versions 1.0.0 dated 2016-10-05 and 2.0.0 dated 2018-10-31
automultinomial-1.0.0/automultinomial/R/JMatrixCentered.R |only automultinomial-1.0.0/automultinomial/R/JMatrixUncentered.R |only automultinomial-1.0.0/automultinomial/R/MPLE.R |only automultinomial-1.0.0/automultinomial/R/MPLEinternal.R |only automultinomial-1.0.0/automultinomial/R/adjMat.R |only automultinomial-1.0.0/automultinomial/R/centeredGradient.R |only automultinomial-1.0.0/automultinomial/R/centeredHessian.R |only automultinomial-1.0.0/automultinomial/R/centeredLogLikelihood.R |only automultinomial-1.0.0/automultinomial/R/chol_psd.R |only automultinomial-1.0.0/automultinomial/R/criterionFit.R |only automultinomial-1.0.0/automultinomial/R/indsFunction.R |only automultinomial-1.0.0/automultinomial/R/logLikelihood.R |only automultinomial-1.0.0/automultinomial/R/multinomialBCD.R |only automultinomial-1.0.0/automultinomial/R/multinomialGradient.R |only automultinomial-1.0.0/automultinomial/R/multinomialHessian.R |only automultinomial-1.0.0/automultinomial/R/plotGrid.R |only automultinomial-1.0.0/automultinomial/R/sandwichVariance.R |only automultinomial-1.0.0/automultinomial/R/significanceTest.R |only automultinomial-1.0.0/automultinomial/R/simulateData.R |only automultinomial-1.0.0/automultinomial/R/sourceFunction.R |only automultinomial-1.0.0/automultinomial/R/totalX.R |only automultinomial-1.0.0/automultinomial/R/unStandardize.R |only automultinomial-1.0.0/automultinomial/man/JMatrixCentered.Rd |only automultinomial-1.0.0/automultinomial/man/JMatrixUncentered.Rd |only automultinomial-1.0.0/automultinomial/man/MPLEinternal.Rd |only automultinomial-1.0.0/automultinomial/man/adjMat.Rd |only automultinomial-1.0.0/automultinomial/man/centeredLogLikGrad.Rd |only automultinomial-1.0.0/automultinomial/man/centeredLogLikHess.Rd |only automultinomial-1.0.0/automultinomial/man/centeredLogLikelihood.Rd |only automultinomial-1.0.0/automultinomial/man/chol_psd.Rd |only automultinomial-1.0.0/automultinomial/man/criterionFit.Rd |only automultinomial-1.0.0/automultinomial/man/indsFunction.Rd |only automultinomial-1.0.0/automultinomial/man/logLikelihood.Rd |only automultinomial-1.0.0/automultinomial/man/multProb.Rd |only automultinomial-1.0.0/automultinomial/man/multinomialBCD.Rd |only automultinomial-1.0.0/automultinomial/man/plotGrid.Rd |only automultinomial-1.0.0/automultinomial/man/sandwichVariance.Rd |only automultinomial-1.0.0/automultinomial/man/significanceTest.Rd |only automultinomial-1.0.0/automultinomial/man/simulateData.Rd |only automultinomial-1.0.0/automultinomial/man/totalX.Rd |only automultinomial-1.0.0/automultinomial/man/unStandardize.Rd |only automultinomial-1.0.0/automultinomial/man/uncenteredLogLikGrad.Rd |only automultinomial-1.0.0/automultinomial/man/uncenteredLogLikHess.Rd |only automultinomial-1.0.0/automultinomial/tests |only automultinomial-2.0.0/automultinomial/DESCRIPTION | 24 automultinomial-2.0.0/automultinomial/MD5 | 72 - automultinomial-2.0.0/automultinomial/NAMESPACE | 21 automultinomial-2.0.0/automultinomial/NEWS |only automultinomial-2.0.0/automultinomial/R/MPLE_summary.R |only automultinomial-2.0.0/automultinomial/R/drawSamples.R |only automultinomial-2.0.0/automultinomial/R/multProb.R | 455 +++++++++- automultinomial-2.0.0/automultinomial/build |only automultinomial-2.0.0/automultinomial/inst |only automultinomial-2.0.0/automultinomial/man/MPLE.Rd | 195 +--- automultinomial-2.0.0/automultinomial/man/MPLE_summary.Rd |only automultinomial-2.0.0/automultinomial/man/drawSamples.Rd |only automultinomial-2.0.0/automultinomial/vignettes |only 57 files changed, 524 insertions(+), 243 deletions(-)
More information about automultinomial at CRAN
Permanent link
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-06-01 0.1.3
2018-05-16 0.1.2
2017-06-20 0.1.1
2017-04-30 0.1.0
Title: Geometry Decomposition
Description: Build a map of path-based geometry, this is a simple description of the number
of parts in an object and their basic structure. Translation and restructuring operations for
planar shapes and other hierarchical types require a data model with a record of the underlying
relationships between elements. The gibble() function creates a geometry map, a simple record of
the underlying structure in path-based hierarchical types. There are methods for the planar shape
types in the 'sf' and 'sp' packages and for types in the the 'trip' and in-development 'silicate' packages.
Author: Michael Sumner [aut, cre] (<https://orcid.org/0000-0002-2471-7511>)
Maintainer: Michael Sumner <mdsumner@gmail.com>
Diff between gibble versions 0.0.2 dated 2018-02-05 and 0.1.2 dated 2018-10-31
DESCRIPTION | 14 +++---- MD5 | 34 ++++++++++------- NEWS.md | 12 ++++++ R/gibble-package.R | 26 ++++++++++++- R/gibble-sf.R | 17 ++++---- R/gibble.R | 10 +++-- R/ibble-sf.R | 14 +++++-- R/ibble-sp.R | 35 ++++++++++++++--- R/sysdata.rda |only README.md | 49 ++++++++++++++++++++++-- data/hsh_sf.rda |only data/minimal_mesh.rda |binary data/minimal_mesh_sp.rda |only data/minimal_mesh_sp_line.rda |only man/gibble-package.Rd | 12 ++++++ man/gibble.Rd | 44 +++++++++++++++++----- man/hsh.Rd | 11 +++++ man/minimal_mesh.Rd | 6 ++- tests/testthat/test-sf.R |only tests/testthat/test-silicate.R |only tests/testthat/test-sp.R | 82 ++++++++++++++++++++++++++--------------- 21 files changed, 274 insertions(+), 92 deletions(-)
Title: Functions for Tabular Reporting
Description: Create pretty tables for 'HTML', 'Microsoft Word' and 'Microsoft PowerPoint' documents.
Functions are provided to let users create tables, modify and format their content.
It extends package 'officer' that does not contain any feature for customized tabular reporting
and can be used within R markdown documents when rendering to HTML and to 'Microsoft Word' documents.
Author: David Gohel [aut, cre],
Maxim Nazarov [ctb] (rmarkdown for docx output)
Maintainer: David Gohel <david.gohel@ardata.fr>
Diff between flextable versions 0.4.5 dated 2018-08-27 and 0.4.6 dated 2018-10-31
DESCRIPTION | 11 +-- MD5 | 55 ++++++++------- NAMESPACE | 11 +++ NEWS | 22 ++++++ R/body_add_flextable.R | 18 ++++ R/display.R | 2 R/docx_str.R | 11 +-- R/flextable_sizes.R | 30 ++++---- R/formatters.R |only R/printers.R | 37 +++++++++- R/r6_class.R | 65 +++++++++-------- R/regulartable.R | 59 ---------------- R/tabpart_format.R | 60 +++++++++------- R/utils.R | 2 inst/doc/examples.html | 2 inst/doc/format.R | 13 +++ inst/doc/format.Rmd | 62 +++++++++++++++-- inst/doc/format.html | 159 ++++++++++++++++++++++++++------------------ man/body_add_flextable.Rd | 18 ++++ man/colformat_char.Rd |only man/colformat_int.Rd |only man/colformat_num.Rd |only man/flextable.Rd | 6 + man/format.flextable.Rd |only man/knit_print.flextable.Rd | 5 + man/minibar.Rd | 4 - man/rotate.Rd | 3 man/set_formatter.Rd | 2 man/style.Rd | 4 - man/xtable_to_flextable.Rd | 5 - vignettes/format.Rmd | 62 +++++++++++++++-- 31 files changed, 467 insertions(+), 261 deletions(-)
Title: Functions for Text Mining and Topic Modeling
Description: An aid for text mining in R, with a syntax that
should be familiar to experienced R users. Provides a wrapper for several
topic models that take similarly-formatted input and give similarly-formatted
output. Has additional functionality for analyzing and diagnostics for
topic models.
Author: Thomas Jones [aut, cre],
William Doane [ctb]
Maintainer: Thomas Jones <jones.thos.w@gmail.com>
Diff between textmineR versions 2.1.3 dated 2018-09-11 and 3.0.1 dated 2018-10-31
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Title: 'Rcpp' Bindings to Parser for Tom's Obvious Markup Language
Description: The configuration format defined by 'TOML' (which expands to
"Tom's Obvious Markup Language") specifies an excellent format (described at
<https://github.com/toml-lang/toml>) suitable for both human editing as well
as the common uses of a machine-readable format. This package uses 'Rcpp' to
connect the 'cpptoml' parser written by Chase Geigle (in modern C++11) to R.
Author: Dirk Eddelbuettel
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppTOML versions 0.1.4 dated 2018-10-23 and 0.1.5 dated 2018-10-31
ChangeLog | 24 ++++++++++++++++++ DESCRIPTION | 10 +++---- MD5 | 18 +++++++------- R/RcppExports.R | 4 +-- R/parseToml.R | 6 ++-- README.md | 13 +++------- inst/NEWS.Rd | 25 +++++++++++++------ man/parseTOML.Rd | 24 ++++++++++++++++-- src/RcppExports.cpp | 9 +++---- src/parse.cpp | 66 ++++++++++++++++++++++++++++++++-------------------- 10 files changed, 132 insertions(+), 67 deletions(-)
Title: Generalized IRT Ideal Point Models with 'Stan'
Description: Offers item-response theory (IRT) ideal-point estimation for binary, ordinal, counts and continuous responses with time-varying and missing-data inference. Full and approximate Bayesian sampling with 'Stan' (www.mc-stan.org).
Author: Robert Kubinec [aut, cre],
Jonah Gabry [ctb],
Ben Goodrich [ctb],
Trustees of Columbia University [cph]
Maintainer: Robert Kubinec <rmk7@nyu.edu>
Diff between idealstan versions 0.2.7 dated 2018-02-09 and 0.5.0 dated 2018-10-31
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Title: Procedures for Psychological, Psychometric, and Personality
Research
Description: A general purpose toolbox for personality, psychometric theory and experimental psychology. Functions are primarily for multivariate analysis and scale construction using factor analysis, principal component analysis, cluster analysis and reliability analysis, although others provide basic descriptive statistics. Item Response Theory is done using factor analysis of tetrachoric and polychoric correlations. Functions for analyzing data at multiple levels include within and between group statistics, including correlations and factor analysis. Functions for simulating and testing particular item and test structures are included. Several functions serve as a useful front end for structural equation modeling. Graphical displays of path diagrams, factor analysis and structural equation models are created using basic graphics. Some of the functions are written to support a book on psychometric theory as well as publications in personality research. For more information, see the <https://personality-project.org/r> web page.
Author: William Revelle [aut, cre] (<https://orcid.org/0000-0003-4880-9610>)
Maintainer: William Revelle <revelle@northwestern.edu>
Diff between psych versions 1.8.4 dated 2018-05-06 and 1.8.10 dated 2018-10-31
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psych-1.8.10/psych/R/factor.congruence.R | 72 ++++-- psych-1.8.10/psych/R/factor.stats.R | 2 psych-1.8.10/psych/R/fisherz.R | 5 psych-1.8.10/psych/R/lavaan.diagram.R | 17 + psych-1.8.10/psych/R/make.keys.R | 39 ++- psych-1.8.10/psych/R/mediate.r | 42 +-- psych-1.8.10/psych/R/misc.R | 43 +++ psych-1.8.10/psych/R/multi.hist.R | 14 - psych-1.8.10/psych/R/old.error.dots.r |only psych-1.8.10/psych/R/omega.R | 4 psych-1.8.10/psych/R/omega.diagram.R | 66 +++++ psych-1.8.10/psych/R/omegaSem.R | 4 psych-1.8.10/psych/R/principal.R | 2 psych-1.8.10/psych/R/print.psych.R | 58 ++++ psych-1.8.10/psych/R/r.test.R | 7 psych-1.8.10/psych/R/schmid.R | 103 ++++++++ psych-1.8.10/psych/R/score.items.R | 4 psych-1.8.10/psych/R/scoreFast.r | 128 ++++++++-- psych-1.8.10/psych/R/scoreOverlap.r | 5 psych-1.8.10/psych/R/set.cor.R | 53 +++- psych-1.8.10/psych/R/sim.structural.R | 3 psych-1.8.10/psych/R/splitHalf.R | 3 psych-1.8.10/psych/R/stats.by.r | 2 psych-1.8.10/psych/R/statsBy.r | 2 psych-1.8.10/psych/R/structure.diagram.R | 52 +++- psych-1.8.10/psych/R/summary.psych.R | 54 ++++ psych-1.8.10/psych/R/test.psych.r | 1 psych-1.8.10/psych/build/vignette.rds |binary psych-1.8.10/psych/data/Bechtoldt.1.rda |binary psych-1.8.10/psych/data/Bechtoldt.2.rda |binary psych-1.8.10/psych/data/Bechtoldt.rda |binary psych-1.8.10/psych/data/Dwyer.rda |binary psych-1.8.10/psych/data/GSBE.rda |binary psych-1.8.10/psych/data/Gleser.rda |binary psych-1.8.10/psych/data/Gorsuch.rda |binary psych-1.8.10/psych/data/Harman.5.rda |binary psych-1.8.10/psych/data/Harman.8.rda |binary psych-1.8.10/psych/data/Harman.political.rda |binary psych-1.8.10/psych/data/Harman.rda |binary psych-1.8.10/psych/data/Holzinger.9.rda |binary psych-1.8.10/psych/data/Holzinger.rda |binary psych-1.8.10/psych/data/Reise.rda |binary psych-1.8.10/psych/data/Schmid.rda |binary psych-1.8.10/psych/data/Schutz.rda |binary psych-1.8.10/psych/data/Tal.Or.rda |only psych-1.8.10/psych/data/Thurstone.33.rda |binary psych-1.8.10/psych/data/Thurstone.9.rda |binary psych-1.8.10/psych/data/Thurstone.rda |binary psych-1.8.10/psych/data/Tucker.rda |binary psych-1.8.10/psych/data/ability.rda |binary psych-1.8.10/psych/data/affect.rda |binary psych-1.8.10/psych/data/bfi.dictionary.rda |binary psych-1.8.10/psych/data/bfi.rda |binary psych-1.8.10/psych/data/blant.rda |binary psych-1.8.10/psych/data/blot.rda |binary psych-1.8.10/psych/data/bock.rda |binary psych-1.8.10/psych/data/burt.rda |binary psych-1.8.10/psych/data/cattell.rda |binary psych-1.8.10/psych/data/cities.rda |binary psych-1.8.10/psych/data/cubits.rda |binary psych-1.8.10/psych/data/cushny.rda |binary psych-1.8.10/psych/data/epi.bfi.rda |binary psych-1.8.10/psych/data/epi.dictionary.rda |binary psych-1.8.10/psych/data/epi.rda |binary psych-1.8.10/psych/data/epiR.rda |binary psych-1.8.10/psych/data/galton.rda |binary psych-1.8.10/psych/data/heights.rda |binary psych-1.8.10/psych/data/income.rda |binary psych-1.8.10/psych/data/iqitems.rda |binary psych-1.8.10/psych/data/msq.rda |binary psych-1.8.10/psych/data/msqR.rda |binary psych-1.8.10/psych/data/neo.rda |binary psych-1.8.10/psych/data/peas.rda |binary psych-1.8.10/psych/data/sai.dictionary.rda |binary psych-1.8.10/psych/data/sai.rda |binary psych-1.8.10/psych/data/sat.act.rda |binary psych-1.8.10/psych/data/spi.dictionary.rda |binary psych-1.8.10/psych/data/spi.keys.rda |binary psych-1.8.10/psych/data/spi.rda |binary psych-1.8.10/psych/data/tai.rda |binary psych-1.8.10/psych/data/tal_or.rda |only psych-1.8.10/psych/data/vegetables.rda |binary psych-1.8.10/psych/data/withinBetween.rda |binary psych-1.8.10/psych/inst/CITATION | 4 psych-1.8.10/psych/inst/NEWS.Rd | 126 ++++++++-- psych-1.8.10/psych/inst/doc/intro.Rnw | 8 psych-1.8.10/psych/inst/doc/intro.pdf |binary psych-1.8.10/psych/inst/doc/overview.R | 94 ++++---- psych-1.8.10/psych/inst/doc/overview.Rnw | 22 - 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psych-1.8.10/psych/man/fa.sort.Rd | 3 psych-1.8.10/psych/man/iqitems.Rd | 2 psych-1.8.10/psych/man/mediate.Rd | 30 +- psych-1.8.10/psych/man/msq.Rd | 2 psych-1.8.10/psych/man/msqR.rd | 6 psych-1.8.10/psych/man/multi.hist.Rd | 5 psych-1.8.10/psych/man/omega.Rd | 46 +++ psych-1.8.10/psych/man/r.test.Rd | 23 + psych-1.8.10/psych/man/score.items.Rd | 17 + psych-1.8.10/psych/man/set.cor.Rd | 7 psych-1.8.10/psych/man/spi.Rd | 7 psych-1.8.10/psych/man/structure.diagram.Rd | 6 psych-1.8.10/psych/man/tal_or.Rd | 7 psych-1.8.10/psych/man/tetrachor.Rd | 4 psych-1.8.10/psych/vignettes/intro.Rnw | 8 psych-1.8.10/psych/vignettes/overview.Rnw | 22 - psych-1.8.4/psych/data/Tal_Or.rda |only 156 files changed, 1739 insertions(+), 671 deletions(-)
Title: MultiDimensional Feature Selection
Description: Functions for MultiDimensional Feature Selection (MDFS):
calculating multidimensional information gains, scoring variables,
finding important variables, plotting selection results.
This package includes an optional CUDA implementation that speeds up
information gain calculation using NVIDIA GPGPUs.
Author: Radosław Piliszek [aut, cre],
Krzysztof Mnich [aut],
Paweł Tabaszewski [aut],
Szymon Migacz [aut],
Andrzej Sułecki [aut],
Witold Remigiusz Rudnicki [aut]
Maintainer: Radosław Piliszek <r.piliszek@uwb.edu.pl>
Diff between MDFS versions 1.0.1 dated 2018-06-26 and 1.0.2 dated 2018-10-31
MDFS-1.0.1/MDFS/src/cpu/datafile.cpp |only MDFS-1.0.1/MDFS/src/cpu/datafile.h |only MDFS-1.0.1/MDFS/src/cpu/discretizedfile.cpp |only MDFS-1.0.1/MDFS/src/cpu/discretizedfile.h |only MDFS-1.0.1/MDFS/src/cpu/mdfs_common.cpp |only MDFS-1.0.1/MDFS/src/cpu/mdfs_common.h |only MDFS-1.0.1/MDFS/src/cpu/mdfs_scalar.cpp |only MDFS-1.0.1/MDFS/src/cpu/mdfs_scalar.h |only MDFS-1.0.2/MDFS/DESCRIPTION | 8 - MDFS-1.0.2/MDFS/MD5 | 78 +++++------ MDFS-1.0.2/MDFS/NEWS | 18 ++ MDFS-1.0.2/MDFS/R/information_gain.R | 51 +++++-- MDFS-1.0.2/MDFS/R/main.R | 12 + MDFS-1.0.2/MDFS/R/p_value.R | 2 MDFS-1.0.2/MDFS/configure | 6 MDFS-1.0.2/MDFS/man/MDFS.Rd | 5 MDFS-1.0.2/MDFS/man/RelevantVariables.MDFS.Rd | 2 MDFS-1.0.2/MDFS/src/Makevars.cuda.in | 4 MDFS-1.0.2/MDFS/src/Makevars.in | 4 MDFS-1.0.2/MDFS/src/Makevars.win | 4 MDFS-1.0.2/MDFS/src/cpu/common.cpp |only MDFS-1.0.2/MDFS/src/cpu/common.h |only MDFS-1.0.2/MDFS/src/cpu/dataset.cpp |only MDFS-1.0.2/MDFS/src/cpu/dataset.h |only MDFS-1.0.2/MDFS/src/cpu/discretize.cpp | 81 +++++------- MDFS-1.0.2/MDFS/src/cpu/discretize.h | 28 +--- MDFS-1.0.2/MDFS/src/cpu/mdfs.cpp |only MDFS-1.0.2/MDFS/src/cpu/mdfs.h |only MDFS-1.0.2/MDFS/src/cpu/stats.cpp | 11 + MDFS-1.0.2/MDFS/src/cpu/stats.h | 1 MDFS-1.0.2/MDFS/src/gpu/allocator.cu | 10 - MDFS-1.0.2/MDFS/src/gpu/cucubes.cu | 1 MDFS-1.0.2/MDFS/src/gpu/cucubes.h | 6 MDFS-1.0.2/MDFS/src/gpu/cuda_exception.h |only MDFS-1.0.2/MDFS/src/gpu/cudaerrchk.cuh | 14 -- MDFS-1.0.2/MDFS/src/gpu/discretizer.cu | 2 MDFS-1.0.2/MDFS/src/gpu/kernellauncher.cu | 10 - MDFS-1.0.2/MDFS/src/gpu/kernels.cuh | 2 MDFS-1.0.2/MDFS/src/gpu/kernels2D.cuh | 2 MDFS-1.0.2/MDFS/src/gpu/kernels5D.cuh | 10 - MDFS-1.0.2/MDFS/src/gpu/not_implemented_exception.h |only MDFS-1.0.2/MDFS/src/gpu/scheduler.cu | 3 MDFS-1.0.2/MDFS/src/gpu/splitkernel.cuh | 27 ---- MDFS-1.0.2/MDFS/src/gpu/worker.cu | 3 MDFS-1.0.2/MDFS/src/gpu/worker.cuh | 1 MDFS-1.0.2/MDFS/src/r_interface.cpp | 131 +++++++++++--------- MDFS-1.0.2/MDFS/src/r_interface.h | 46 +++---- MDFS-1.0.2/MDFS/tests/simple_run.R | 2 48 files changed, 300 insertions(+), 285 deletions(-)
Title: Comprehensive TIFF I/O with Full Support for 'ImageJ' TIFF Files
Description: General purpose TIFF file I/O for R users. Currently the only such
package with read and write support for TIFF files with floating point
(real-numbered) pixels, and the only package that can correctly import TIFF
files that were saved from 'ImageJ' and write TIFF files than can be
correctly read by 'ImageJ' <https://imagej.nih.gov/ij/>.
Also supports text image I/O.
Author: Rory Nolan [aut, cre] (<https://orcid.org/0000-0002-5239-4043>),
Kent Johnson [aut],
Simon Urbanek [ctb],
Sergi Padilla-Parra [ths] (<https://orcid.org/0000-0002-8010-9481>),
Jeroen Ooms [rev, ctb] (<https://orcid.org/0000-0002-4035-0289>),
Jon Clayden [rev] (<https://orcid.org/0000-0002-6608-0619>)
Maintainer: Rory Nolan <rorynoolan@gmail.com>
Diff between ijtiff versions 1.4.2 dated 2018-10-07 and 1.5.0 dated 2018-10-31
ijtiff-1.4.2/ijtiff/data |only ijtiff-1.4.2/ijtiff/man/tiff_tag_data.Rd |only ijtiff-1.5.0/ijtiff/DESCRIPTION | 8 +- ijtiff-1.5.0/ijtiff/MD5 | 33 +++++------ ijtiff-1.5.0/ijtiff/NAMESPACE | 1 ijtiff-1.5.0/ijtiff/NEWS.md | 9 +++ ijtiff-1.5.0/ijtiff/R/ijtiff.R | 18 ------ ijtiff-1.5.0/ijtiff/R/text_io.R | 3 + ijtiff-1.5.0/ijtiff/R/utils.R | 30 +++++++++- ijtiff-1.5.0/ijtiff/R/write.R | 10 ++- ijtiff-1.5.0/ijtiff/inst/doc/reading-and-writing-images.html | 16 ++--- ijtiff-1.5.0/ijtiff/inst/doc/text-images.html | 4 - ijtiff-1.5.0/ijtiff/inst/doc/the-imagej-problem.Rmd | 4 - ijtiff-1.5.0/ijtiff/inst/doc/the-imagej-problem.html | 8 +- ijtiff-1.5.0/ijtiff/inst/extdata/TIFF_tags.csv | 2 ijtiff-1.5.0/ijtiff/man/get_tiff_tags_reference.Rd |only ijtiff-1.5.0/ijtiff/man/write_tif.Rd | 8 +- ijtiff-1.5.0/ijtiff/tests/testthat/test_io.R | 1 ijtiff-1.5.0/ijtiff/vignettes/the-imagej-problem.Rmd | 4 - 19 files changed, 93 insertions(+), 66 deletions(-)
Title: Utility Functions for 'spatstat'
Description: Contains utility functions for the 'spatstat' package
which may also be useful for other purposes.
Author: Adrian Baddeley [aut, cre],
Rolf Turner [aut],
Ege Rubak [aut]
Maintainer: Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>
Diff between spatstat.utils versions 1.12-0 dated 2018-10-29 and 1.13-0 dated 2018-10-31
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/utilseq.R | 5 +++-- inst/doc/packagesizes.txt | 1 + tests/numerical.R | 12 ++++++++++++ 5 files changed, 24 insertions(+), 10 deletions(-)
More information about spatstat.utils at CRAN
Permanent link
Title: Reinforced Risk Prediction with Budget Constraint
Description: Traditional risk prediction only utilizes baseline factors known
to be associated with the disease. Given that longitudinal information are
routinely measured and documented for patients, it is worthwhile to make
full use of these data. The available longitudinal biomarker data will
likely improve prediction. However, repeated biomarker collection could be
costly and inconvenient, and risk prediction for patients at a later time
could delay necessary medical decisions. Thus, there is a trade-off between
high quality prediction and cost. This package implements a cost-effective
statistical procedure that recursively incorporates comprehensive
longitudinal information into the risk prediction model, taking into
account the cost of delaying the decision to a follow-up time when more
information is available. The statistical methods are described in the
following paper: Pan, Y., Laber, E., Smith, M., Zhao, Y. (2018). Reinforced
risk prediction with budget constraint: application to electronic health
records data. Manuscript submitted for publication.
Author: Yinghao Pan [aut, cre],
Yingqi Zhao [aut],
Eric Laber [aut]
Maintainer: Yinghao Pan <ypan8@uncc.edu>
Diff between reinforcedPred versions 0.1.0 dated 2018-10-26 and 0.1.1 dated 2018-10-31
DESCRIPTION | 8 ++++---- MD5 | 2 +- 2 files changed, 5 insertions(+), 5 deletions(-)
More information about reinforcedPred at CRAN
Permanent link
Title: Seed Germination Indices and Curve Fitting
Description: Provides functions to compute various germination indices such as
germinability, median germination time, mean germination time, mean germination rate, speed of
germination, Timson's index, germination value, coefficient of uniformity of
germination, uncertainty of germination process, synchrony of germination
etc. from germination count data. Includes functions for fitting cumulative
seed germination curves using four-parameter hill function and computation
of associated parameters. See the vignette for more, including full list of
citations for the methods implemented.
Author: J. Aravind [aut, cre] (<https://orcid.org/0000-0002-4791-442X>),
S. Vimala Devi [aut],
J. Radhamani [aut],
Sherry Rachel Jacob [aut],
Kalyani Srinivasan [aut],
ICAR-NBGPR [cph] (www.nbpgr.ernet.in)
Maintainer: J. Aravind <j.aravind@icar.gov.in>
Diff between germinationmetrics versions 0.1.1.1 dated 2018-10-16 and 0.1.2 dated 2018-10-31
DESCRIPTION | 54 +-- MD5 | 68 ++-- NEWS.md | 8 R/CUGerm.R | 17 - R/FirstGermTime.R | 54 +-- R/FourPHFfit.R | 16 - R/GermPercent.R | 4 R/GermSpeed.R | 53 +-- R/GermSynchrony.R | 36 +- R/GermValue.R | 83 ++--- R/MeanGermPercent.R | 32 +- R/MeanGermRate.R | 117 +++---- R/MeanGermTime.R | 92 +++-- R/TimsonsIndex.R | 73 ++-- R/t50.R | 25 - README.md | 36 +- build/partial.rdb |binary inst/CITATION | 31 + inst/REFERENCES.bib | 571 +++++++++++++++++------------------- inst/doc/Introduction.Rmd | 90 ++++- inst/doc/Introduction.pdf |binary man/CUGerm.Rd | 21 - man/FirstGermTime.Rd | 57 +-- man/FourPHFfit.Rd | 20 - man/GermPercent.Rd | 4 man/GermSpeed.Rd | 57 +-- man/GermSynchrony.Rd | 38 +- man/GermValue.Rd | 84 ++--- man/MeanGermPercent.Rd | 32 +- man/MeanGermRate.Rd | 123 +++---- man/MeanGermTime.Rd | 88 ++--- man/TimsonsIndex.Rd | 69 +--- man/t50.Rd | 27 - vignettes/Introduction.Rmd | 90 ++++- vignettes/REFERENCES.bib | 698 ++++++++++++++++++++++----------------------- 35 files changed, 1450 insertions(+), 1418 deletions(-)
More information about germinationmetrics at CRAN
Permanent link
Title: Multivariate Ordinal Regression Models
Description: A flexible framework for fitting multivariate
ordinal regression models with composite likelihood methods.
Author: Rainer Hirk [aut, cre],
Kurt Hornik [aut],
Laura Vana [aut],
Alan Genz [ctb] (Fortran Code)
Maintainer: Rainer Hirk <rhirk@wu.ac.at>
Diff between mvord versions 0.3.2 dated 2018-10-03 and 0.3.3 dated 2018-10-31
DESCRIPTION | 8 MD5 | 20 - NEWS | 3 R/mvord_fit.R | 14 - R/predict.R | 439 +++++++++++++++++++++--------------------- R/se.R | 3 inst/doc/vignette_mvord.R | 2 inst/doc/vignette_mvord.Rnw | 112 +++++----- inst/doc/vignette_mvord.pdf |binary inst/doc/vignette_mvord2.html | 4 vignettes/vignette_mvord.Rnw | 112 +++++----- 11 files changed, 361 insertions(+), 356 deletions(-)
Title: Arrange Elements on the R's Drawing Area or Inside the
PowerPoint's Slide
Description: Create complicated drawing areas for multiple elements by combining much simpler layouts. It is an extended version of layout function from the 'graphics' package, but it also works with 'grid' graphics. It also supports arranging elements inside 'PowerPoint' slides created using the 'officer' package.
Author: Zygmunt Zawadzki [aut, cre]
Maintainer: Zygmunt Zawadzki <zygmunt@zstat.pl>
Diff between customLayout versions 0.2.0 dated 2018-09-27 and 0.3.0 dated 2018-10-31
DESCRIPTION | 12 MD5 | 60 - NAMESPACE | 3 R/Layout.R | 152 ++- R/asserts.R |only R/flextable.R | 14 R/officer.R | 102 ++ R/repColsRows.R | 4 R/splitField.R | 15 R/utils.R | 64 - build/vignette.rds |binary inst/doc/Roadmap.Rmd | 11 inst/doc/Roadmap.html | 368 +++----- inst/doc/customlayout-cookbook.R |only inst/doc/customlayout-cookbook.Rmd |only inst/doc/customlayout-cookbook.html |only inst/doc/layouts-for-officer-power-point-document.Rmd | 2 inst/doc/layouts-for-officer-power-point-document.html | 778 +++++++---------- inst/pptx |only man/lay_new.Rd | 19 man/phl_layout.Rd | 4 man/phl_with_vg.Rd |only man/print.CustomLayout.Rd |only man/print.OfficerCustomLayout.Rd |only tests/pptx |only tests/testthat/test-asserts.R |only tests/testthat/test-basic.R | 4 tests/testthat/test-flextable.R | 125 ++ tests/testthat/test-officer.R | 147 +++ tests/testthat/test-reps-functions.R | 2 tests/testthat/test-utils.R |only vignettes/Roadmap.Rmd | 11 vignettes/cookbook |only vignettes/customlayout-cookbook.Rmd |only vignettes/layouts-for-officer-power-point-document.Rmd | 2 35 files changed, 1128 insertions(+), 771 deletions(-)
Title: Bayesian Latent Variable Analysis
Description: Fit a variety of Bayesian latent variable models, including confirmatory
factor analysis, structural equation models, and latent growth curve models.
Author: Edgar Merkle [aut, cre] (<https://orcid.org/0000-0001-7158-0653>),
Yves Rosseel [aut],
Mauricio Garnier-Villarreal [ctb],
Terrence D. Jorgensen [ctb],
Huub Hoofs [ctb],
Rens van de Schoot [ctb]
Maintainer: Edgar Merkle <merklee@missouri.edu>
Diff between blavaan versions 0.3-2 dated 2018-06-10 and 0.3-3 dated 2018-10-31
blavaan-0.3-2/blavaan/R/ctr_bayes_metrics.R |only blavaan-0.3-2/blavaan/README |only blavaan-0.3-3/blavaan/DESCRIPTION | 17 ++-- blavaan-0.3-3/blavaan/MD5 | 35 ++++---- blavaan-0.3-3/blavaan/NAMESPACE | 4 blavaan-0.3-3/blavaan/NEWS | 18 ++++ blavaan-0.3-3/blavaan/R/blav_compare.R | 20 ++-- blavaan-0.3-3/blavaan/R/blav_fit_measures.R | 34 ++++++-- blavaan-0.3-3/blavaan/R/blav_object_inspect.R | 17 ++-- blavaan-0.3-3/blavaan/R/blav_object_methods.R | 33 +++++--- blavaan-0.3-3/blavaan/R/blav_utils.R | 3 blavaan-0.3-3/blavaan/R/blavaan.R | 45 ++++------ blavaan-0.3-3/blavaan/R/lav_export_stan.R | 107 ++++++++++++++++++-------- blavaan-0.3-3/blavaan/R/margloglik.R | 6 - blavaan-0.3-3/blavaan/R/set_stancovs.R | 8 - blavaan-0.3-3/blavaan/R/zzz.R | 1 blavaan-0.3-3/blavaan/README.md |only blavaan-0.3-3/blavaan/inst/testdata |only blavaan-0.3-3/blavaan/man/blav_internal.Rd | 1 blavaan-0.3-3/blavaan/tests |only 20 files changed, 221 insertions(+), 128 deletions(-)