Title: OpenWeatherMap API Wrapper
Description: Accesses OpenWeatherMap's (owm) <https://openweathermap.org/> API.
'owm' itself is a service providing weather data in the past, in the future and now.
Furthermore, 'owm' serves weather map layers usable in frameworks like 'leaflet'.
In order to access the API, you need to sign up for an API key. There are free and paid plans.
Beside functions for fetching weather data from 'owm', 'owmr' supplies
tools to tidy up fetched data (for fast and simple access) and to show it on leaflet maps.
Author: Stefan Kuethe [aut, cre],
Amanda Dobbyn [ctb]
Maintainer: Stefan Kuethe <crazycapivara@gmail.com>
Diff between owmr versions 0.7.2 dated 2017-01-14 and 0.8.1 dated 2018-11-03
owmr-0.7.2/owmr/R/stations.R |only owmr-0.7.2/owmr/man/find_stations_by_geo_point.Rd |only owmr-0.7.2/owmr/man/get_current_from_station.Rd |only owmr-0.7.2/owmr/man/pipe.Rd |only owmr-0.7.2/owmr/tests/testthat/data/response-stations_multiple.rds |only owmr-0.7.2/owmr/tests/testthat/data/stations_multiple.rds |only owmr-0.7.2/owmr/tests/testthat/test_stations.R |only owmr-0.8.1/owmr/DESCRIPTION | 21 owmr-0.8.1/owmr/MD5 | 136 ++--- owmr-0.8.1/owmr/NAMESPACE | 9 owmr-0.8.1/owmr/NEWS.md | 60 +- owmr-0.8.1/owmr/R/city_list.R | 6 owmr-0.8.1/owmr/R/current-bbox.R |only owmr-0.8.1/owmr/R/current-multiple.R | 14 owmr-0.8.1/owmr/R/current.R | 12 owmr-0.8.1/owmr/R/data.R | 8 owmr-0.8.1/owmr/R/fetch_test_data.R | 27 - owmr-0.8.1/owmr/R/forecast-daily.R | 10 owmr-0.8.1/owmr/R/forecast.R | 8 owmr-0.8.1/owmr/R/leaflet.R | 22 owmr-0.8.1/owmr/R/lowlevel.R | 42 - owmr-0.8.1/owmr/R/package.R | 22 owmr-0.8.1/owmr/R/render.R | 8 owmr-0.8.1/owmr/R/response-to-tibble.R |only owmr-0.8.1/owmr/R/settings.R | 21 owmr-0.8.1/owmr/R/tidy_up-cbind_weather.R | 7 owmr-0.8.1/owmr/R/tidy_up-flatten.R | 5 owmr-0.8.1/owmr/R/tidy_up-flatten_weather.R | 9 owmr-0.8.1/owmr/R/tidy_up-parse_columns.R | 9 owmr-0.8.1/owmr/R/tidy_up-remove_prefix.R | 4 owmr-0.8.1/owmr/R/tidy_up-use_underscore.R | 2 owmr-0.8.1/owmr/R/tidy_up.R | 17 owmr-0.8.1/owmr/R/tiles.R | 33 - owmr-0.8.1/owmr/R/zzz.R | 12 owmr-0.8.1/owmr/README.md | 234 ++++------ owmr-0.8.1/owmr/data/datalist | 1 owmr-0.8.1/owmr/data/owm_layers.rda |only owmr-0.8.1/owmr/man/add_owm_tiles.Rd | 7 owmr-0.8.1/owmr/man/add_weather.Rd | 12 owmr-0.8.1/owmr/man/cbind_weather.Rd | 5 owmr-0.8.1/owmr/man/find_cities_by_bbox.Rd |only owmr-0.8.1/owmr/man/find_cities_by_geo_point.Rd | 5 owmr-0.8.1/owmr/man/find_city.Rd | 1 owmr-0.8.1/owmr/man/flatten.Rd | 5 owmr-0.8.1/owmr/man/flatten_weather.Rd | 5 owmr-0.8.1/owmr/man/get_current.Rd | 1 owmr-0.8.1/owmr/man/get_current_for_group.Rd | 3 owmr-0.8.1/owmr/man/get_forecast.Rd | 1 owmr-0.8.1/owmr/man/get_forecast_daily.Rd | 5 owmr-0.8.1/owmr/man/get_icon_url.Rd | 1 owmr-0.8.1/owmr/man/owm_cities.Rd | 3 owmr-0.8.1/owmr/man/owm_layers.Rd | 18 owmr-0.8.1/owmr/man/owmr.Rd | 5 owmr-0.8.1/owmr/man/owmr_as_tibble.Rd |only owmr-0.8.1/owmr/man/owmr_settings.Rd | 4 owmr-0.8.1/owmr/man/parse_columns.Rd | 1 owmr-0.8.1/owmr/man/reexports.Rd |only owmr-0.8.1/owmr/man/remove_prefix.Rd | 1 owmr-0.8.1/owmr/man/render.Rd | 1 owmr-0.8.1/owmr/man/search_city_list.Rd | 5 owmr-0.8.1/owmr/man/tidy_up.Rd | 3 owmr-0.8.1/owmr/man/tidy_up_.Rd | 5 owmr-0.8.1/owmr/man/use_underscore.Rd | 1 owmr-0.8.1/owmr/tests/testthat/data/current.rds |binary owmr-0.8.1/owmr/tests/testthat/data/current_multiple.rds |binary owmr-0.8.1/owmr/tests/testthat/data/response-current.rds |binary owmr-0.8.1/owmr/tests/testthat/data/response-forecast.rds |binary owmr-0.8.1/owmr/tests/testthat/test_city_list.R | 27 - owmr-0.8.1/owmr/tests/testthat/test_current.R | 31 + owmr-0.8.1/owmr/tests/testthat/test_current_mocks.R | 26 - owmr-0.8.1/owmr/tests/testthat/test_current_multiple.R | 25 - owmr-0.8.1/owmr/tests/testthat/test_deprecated.R |only owmr-0.8.1/owmr/tests/testthat/test_forecast.R | 47 +- owmr-0.8.1/owmr/tests/testthat/test_parse_columns.R | 17 owmr-0.8.1/owmr/tests/testthat/test_render.R | 35 - owmr-0.8.1/owmr/tests/testthat/test_tidy_up.R | 42 - 76 files changed, 593 insertions(+), 514 deletions(-)
Title: Tidy RSS for R
Description: With the objective of including data from RSS feeds into your analysis, 'tidyRSS' parses RSS, Atom XML, JSON and geoRSS feeds and returns a tidy data frame.
Author: Robert Myles McDonnell
Maintainer: Robert Myles McDonnell <robertmylesmcdonnell@gmail.com>
Diff between tidyRSS versions 1.2.6 dated 2018-08-29 and 1.2.7 dated 2018-11-03
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- NEWS.md | 5 +++++ R/rss_parse.R | 1 + build/vignette.rds |binary inst/doc/tidyrss.html | 14 ++++++-------- 6 files changed, 20 insertions(+), 16 deletions(-)
Title: Unifying Estimation Results with Binary Dependent Variables
Description: Calculate unified measures
that quantify the effect of a covariate on a binary dependent variable
(e.g., for meta-analyses).
This can be particularly important
if the estimation results are obtained
with different models/estimators
(e.g., linear probability model, logit, probit, ...)
and/or with different transformations of the explanatory variable of interest
(e.g., linear, quadratic, interval-coded, ...).
The calculated unified measures are:
(a) semi-elasticities of linear, quadratic, or interval-coded covariates and
(b) effects of linear, quadratic, interval-coded, or categorical covariates
when a linear or quadratic covariate changes between distinct intervals,
the reference category of a categorical variable
or the reference interval of an interval-coded variable needs to be changed,
or some categories of a categorical covariate
or some intervals of an interval-coded covariate need to be grouped together.
Approximate standard errors of the unified measures are also calculated.
Author: Arne Henningsen, Geraldine Henningsen
Maintainer: Arne Henningsen <arne.henningsen@gmail.com>
Diff between urbin versions 0.1-4 dated 2018-10-31 and 0.1-6 dated 2018-11-03
DESCRIPTION | 8 MD5 | 22 - tests/logit.R | 189 ++++++------- tests/logit.Rout.save | 510 ++++++++++++++++++------------------ tests/lpm.R | 203 +++++++------- tests/lpm.Rout.save | 521 ++++++++++++++++++------------------- tests/mvprobit.R | 308 +++++++++++----------- tests/mvprobit.Rout.save | 560 ++++++++++++++++++++-------------------- tests/oprobit.R | 298 ++++++++++----------- tests/oprobit.Rout.save | 648 +++++++++++++++++++++++------------------------ tests/probit.R | 239 ++++++++--------- tests/probit.Rout.save | 564 ++++++++++++++++++++-------------------- 12 files changed, 2031 insertions(+), 2039 deletions(-)
Title: Reproduce Statistical Analyses and Meta-Analyses
Description: Includes data analysis functions (e.g., to calculate effect sizes and 95% Confidence Intervals (CI) on Standardised Effect Sizes (d) for ABBA cross-over repeated-measures experimental designs), data presentation functions (e.g., density curve overlaid on histogram), and the data sets analyzed in different research papers in software engineering (e.g., related to software defect prediction or multi-site experiment concerning the extent to which structured abstracts were clearer and more complete than conventional abstracts) to streamline reproducible research in software engineering.
Author: Lech Madeyski [cre, aut, ctb],
Barbara Kitchenham [ctb] (Data and code contributor),
Marian Jureczko [ctb] (Data contributor),
David Budgen [ctb] (Data contributor),
Pearl Brereton [ctb] (Data contributor),
Jacky Keung [ctb] (Data contributor),
Stuart Charters [ctb] (Data contributor),
Shirley Gibbs [ctb] (Data contributor),
Amnart Pohthong [ctb] (Data contributor)
Maintainer: Lech Madeyski <lech.madeyski@gmail.com>
Diff between reproducer versions 0.1.9 dated 2017-07-24 and 0.2.0 dated 2018-11-03
DESCRIPTION | 17 MD5 | 71 ++- NAMESPACE | 13 NEWS.md | 23 + R/MadeyskiKitchenhamMetaAnalysis.R | 6 R/MetaAnalysisForFamiliesOfExperimentsSR.R |only R/data.R | 179 ++++++++-- README.md | 2 data/KitchenhamMadeyskiBrereton.ABBAMetaAnalysisReportedResults.rda |only data/KitchenhamMadeyskiBrereton.ABBAReportedEffectSizes.rda |only data/KitchenhamMadeyskiBrereton.DocData.rda |only data/KitchenhamMadeyskiBrereton.ExpData.rda |only data/KitchenhamMadeyskiBrereton.MetaAnalysisReportedResults.rda |only data/KitchenhamMadeyskiBrereton.ReportedEffectSizes.rda |only inst/CITATION | 33 + man/Ciolkowski09ESEM.MetaAnalysis.PBRvsCBRorAR.Rd | 2 man/ExtractMAStatistics.Rd |only man/KitchenhamMadeyski.SimulatedCrossoverDataSets.Rd | 2 man/KitchenhamMadeyskiBrereton.ABBAMetaAnalysisReportedResults.Rd |only man/KitchenhamMadeyskiBrereton.ABBAReportedEffectSizes.Rd |only man/KitchenhamMadeyskiBrereton.DocData.Rd |only man/KitchenhamMadeyskiBrereton.ExpData.Rd |only man/KitchenhamMadeyskiBrereton.MetaAnalysisReportedResults.Rd |only man/KitchenhamMadeyskiBrereton.ReportedEffectSizes.Rd |only man/KitchenhamMadeyskiBudgen16.COCOMO.Rd | 6 man/KitchenhamMadeyskiBudgen16.DiffInDiffData.Rd | 2 man/KitchenhamMadeyskiBudgen16.FINNISH.Rd | 2 man/KitchenhamMadeyskiBudgen16.PolishData.Rd | 6 man/KitchenhamMadeyskiBudgen16.PolishSubjects.Rd | 2 man/KitchenhamMadeyskiBudgen16.SubjectData.Rd | 6 man/Madeyski15SQJ.NDC.Rd | 2 man/MadeyskiKitchenham.EUBASdata.Rd | 4 man/MadeyskiKitchenham.MetaAnalysis.PBRvsCBRorAR.Rd | 6 man/PrepareForMetaAnalysisGtoR.Rd |only man/aggregateIndividualDocumentStatistics.Rd |only man/calculateHg.Rd |only man/calculateSmallSampleSizeAdjustment.Rd |only man/constructEffectSizes.Rd |only man/effectSizeCI.Rd | 6 man/getSimulationData.Rd | 3 man/plotOutcomesForIndividualsInEachSequenceGroup.Rd | 4 man/printXTable.Rd | 5 man/reproduceTablesOfPaperMetaAnalysisForFamiliesOfExperiments.Rd |only man/transformHgtoR.Rd |only man/transformRtoHg.Rd |only man/transformRtoZr.Rd |only man/transformZrtoHg.Rd |only man/transformZrtoHgapprox.Rd |only man/transformZrtoR.Rd |only tests/testthat/test-MetaAnalysisForFamiliesOfExperimentsSR.R |only 50 files changed, 305 insertions(+), 97 deletions(-)
Title: Geographic Data Analysis and Modeling
Description: Reading, writing, manipulating, analyzing and modeling of gridded spatial data. The package implements basic and high-level functions. Processing of very large files is supported.
Author: Robert J. Hijmans [cre, aut],
Jacob van Etten [ctb],
Joe Cheng [ctb],
Michael Sumner [ctb],
Matteo Mattiuzzi [ctb],
Jonathan A. Greenberg [ctb],
Oscar Perpinan Lamigueiro [ctb],
Andrew Bevan [ctb],
Roger Bivand [ctb],
Lorenzo Busetto [ctb],
Mort Canty [ctb],
David Forrest [ctb],
Aniruddha Ghosh [ctb],
Duncan Golicher [ctb],
Josh Gray [ctb],
Paul Hiemstra [ctb],
Institute for Mathematics Applied Geosciences [cph],
Charles Karney [ctb],
Steven Mosher [ctb],
Jakub Nowosad [ctb],
Edzer Pebesma [ctb],
Etienne B. Racine [ctb],
Barry Rowlingson [ctb],
Ashton Shortridge [ctb],
Bill Venables [ctb],
Rafael Wueest [ctb]
Maintainer: Robert J. Hijmans <r.hijmans@gmail.com>
Diff between raster versions 2.7-15 dated 2018-10-16 and 2.8-4 dated 2018-11-03
ChangeLog | 18 ++++++- DESCRIPTION | 18 ++++--- MD5 | 69 ++++++++++++++++------------- R/RcppExports.R | 4 + R/alignExtent.R | 8 ++- R/arith.R | 8 +++ R/as.character.R |only R/blockSize.R | 14 +++--- R/canProcessInMemory.R | 91 +++++++++++++++++++++++++-------------- R/cellValues.R | 16 +++--- R/getData.R | 16 ++++-- R/netCDFtoRasterCD.R | 1 R/netCDFutil.R | 26 +++++++++-- R/netCDFwriteCD.R | 5 +- R/projectRaster.R | 2 R/raster.R | 2 R/rasterOptions.R | 85 ++++++++++++++++++++---------------- R/readCellsGDAL.R | 111 ++++++++++++++++++++++++------------------------ R/sf.R | 10 +++- R/subs.R | 5 -- R/xyCell.R | 33 ++++++++++++-- inst/doc/Raster.pdf |binary inst/doc/functions.pdf |binary inst/doc/rasterfile.pdf |binary man/as.character.Rd |only man/geom.Rd | 7 +++ man/programming.Rd | 9 ++- man/raster-package.Rd | 7 +-- man/rasterOptions.Rd | 20 ++++---- man/xyFromCell.Rd | 6 +- src/RasterModule.cpp | 3 - src/RcppExports.cpp | 12 +++++ src/aggregate.cpp | 1 src/area.cpp | 1 src/memory.cpp |only src/memory.h |only tests |only 37 files changed, 375 insertions(+), 233 deletions(-)
Title: Rapid Calculation of Model Metrics
Description: Collection of metrics for evaluating models written in C++ using 'Rcpp'. Popular metrics include area under the curve, log loss, root mean square error, etc.
Author: Tyler Hunt [aut, cre]
Maintainer: Tyler Hunt <thunt@snapfinance.com>
Diff between ModelMetrics versions 1.2.0 dated 2018-08-10 and 1.2.2 dated 2018-11-03
DESCRIPTION | 10 +++++----- MD5 | 14 +++++++------- R/ModelMetrics.R | 4 ++-- man/ppv.Rd | 4 ++-- src/auc_.cpp | 7 ++++--- src/error.cpp | 2 +- src/gini_.cpp | 2 +- src/logLoss_.cpp | 2 +- 8 files changed, 23 insertions(+), 22 deletions(-)
Title: R Interface to the 'Protocol Buffers' 'API' (Version 2 or 3)
Description: Protocol Buffers are a way of encoding structured data in an
efficient yet extensible format. Google uses Protocol Buffers for almost all
of its internal 'RPC' protocols and file formats. Additional documentation
is available in two included vignettes one of which corresponds to our 'JSS'
paper (2016, <doi:10.18637/jss.v071.i02>. Either version 2 or 3 of the
'Protocol Buffers' 'API' is supported.
Author: Romain Francois, Dirk Eddelbuettel, Murray Stokely and Jeroen Ooms
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RProtoBuf versions 0.4.12 dated 2018-07-11 and 0.4.13 dated 2018-11-03
ChangeLog | 52 ++++++++++++++++++++++++++++- DESCRIPTION | 8 ++-- MD5 | 32 +++++++++--------- R/rexp_obj.R | 8 ++-- README.md | 3 + build/vignette.rds |binary configure | 64 +++++++++++++++++++----------------- configure.ac | 63 +++++++++++++++++++---------------- inst/NEWS.Rd | 12 ++++++ inst/doc/RProtoBuf-intro.pdf |binary inst/doc/RProtoBuf-paper.pdf |binary inst/doc/RProtoBuf-quickref.pdf |binary inst/doc/RProtoBuf-unitTests.pdf |binary inst/unitTests/runit.serialize_pb.R | 5 ++ man/readASCII.Rd | 2 + tests/runUnitTests.R | 63 +++++++++++++++++++---------------- vignettes/figures/fig-SER.pdf |binary 17 files changed, 200 insertions(+), 112 deletions(-)
Title: Optimal Weight Exchange Algorithm for Optimal Designs for Three
Models
Description: An implementation of optimal weight exchange algorithm Yang(2013) <doi:10.1080/01621459.2013.806268> for three models.
They are Crossover model with subject dropout, crossover model with proportional
first order residual effects and interference model. You can use it to find either
A-opt or D-opt approximate designs. Exact designs can be automatically rounded
from approximate designs and relative efficiency is provided as well.
Author: Shuai Hao [aut, cre],
Min Yang [aut],
Wei Zheng [aut]
Maintainer: Shuai Hao <shuaih0303@gmail.com>
Diff between OWEA versions 0.1.0 dated 2018-11-02 and 0.1.1 dated 2018-11-03
DESCRIPTION | 6 +++--- MD5 | 7 ++++--- README.md |only inst/shiny/server.R | 2 +- inst/shiny/ui.R | 4 ++-- 5 files changed, 10 insertions(+), 9 deletions(-)
Title: Plot 'rpart' Models: An Enhanced Version of 'plot.rpart'
Description: Plot 'rpart' models. Extends plot.rpart() and text.rpart()
in the 'rpart' package.
Author: Stephen Milborrow
Maintainer: Stephen Milborrow <milbo@sonic.net>
Diff between rpart.plot versions 3.0.4 dated 2018-08-13 and 3.0.5 dated 2018-11-03
DESCRIPTION | 6 MD5 | 34 +-- NEWS | 14 + R/branches.R | 1 R/node.labs.R | 72 ++++++- R/palette.R | 9 R/prp.R | 5 R/rpart.rules.R | 14 - R/split.labs.R | 17 + inst/doc/prp.pdf |binary inst/slowtests/test.palette.Rout.save | 2 inst/slowtests/test.prp.Rout.save | 4 inst/slowtests/test.rpart.plot.R | 201 +++++++++++++++++++--- inst/slowtests/test.rpart.plot.Rout.save | 273 +++++++++++++++++++++++++++--- inst/slowtests/test.rpart.rules.R | 67 ++++++- inst/slowtests/test.rpart.rules.Rout.save | 211 ++++++++++++++++------- inst/slowtests/vignette.Rout.save | 2 man/prp.Rd | 12 + 18 files changed, 761 insertions(+), 183 deletions(-)
Title: Tools to Format Numbers for Publication
Description: Format numbers and plots for publication; includes the removal of leading zeros,
standardization of number of digits, addition of affixes, and a p-value formatter. These
tools combine the functionality of several 'base' functions such as 'paste()',
'format()', and 'sprintf()' into specific use case functions that are named in a way
that is consistent with usage, making their names easy to remember and easy to deploy.
Author: Tyler Rinker [aut, cre]
Maintainer: Tyler Rinker <tyler.rinker@gmail.com>
Diff between numform versions 0.4.0 dated 2017-12-12 and 0.5.0 dated 2018-11-03
numform-0.4.0/numform/tools/figure/unnamed-chunk-13-1.png |only numform-0.4.0/numform/tools/figure/unnamed-chunk-14-1.png |only numform-0.4.0/numform/tools/figure/unnamed-chunk-23-1.png |only numform-0.4.0/numform/tools/figure/unnamed-chunk-24-1.png |only numform-0.4.0/numform/tools/figure/unnamed-chunk-25-1.png |only numform-0.4.0/numform/tools/figure/unnamed-chunk-26-1.png |only numform-0.4.0/numform/tools/figure/unnamed-chunk-37-1.png |only numform-0.4.0/numform/tools/figure/unnamed-chunk-38-1.png |only numform-0.4.0/numform/tools/figure/unnamed-chunk-39-1.png |only numform-0.4.0/numform/tools/figure/unnamed-chunk-40-1.png |only numform-0.4.0/numform/tools/figure/unnamed-chunk-41-1.png |only numform-0.4.0/numform/tools/figure/unnamed-chunk-42-1.png |only numform-0.5.0/numform/DESCRIPTION | 33 numform-0.5.0/numform/MD5 | 96 +- numform-0.5.0/numform/NAMESPACE | 84 ++ numform-0.5.0/numform/NEWS | 66 + numform-0.5.0/numform/R/alignment.R | 4 numform-0.5.0/numform/R/as_factor.R | 3 numform-0.5.0/numform/R/constants.R | 10 numform-0.5.0/numform/R/f_bin.R |only numform-0.5.0/numform/R/f_data.R |only numform-0.5.0/numform/R/f_denom.R | 206 +++++- numform-0.5.0/numform/R/f_list.R |only numform-0.5.0/numform/R/f_logical.R | 15 numform-0.5.0/numform/R/f_month.R | 160 ++++ numform-0.5.0/numform/R/f_percent.R | 52 + numform-0.5.0/numform/R/f_quarter.R | 8 numform-0.5.0/numform/R/f_weekday.R | 142 ++++ numform-0.5.0/numform/R/fv_percent_diff.R | 27 numform-0.5.0/numform/R/fv_percent_lead.R |only numform-0.5.0/numform/R/glue-reexports.R |only numform-0.5.0/numform/R/highlight_cells.R |only numform-0.5.0/numform/R/utils.R | 4 numform-0.5.0/numform/README.md | 476 ++++++++++++-- numform-0.5.0/numform/inst/CITATION | 10 numform-0.5.0/numform/man/alignment.Rd | 2 numform-0.5.0/numform/man/constants.Rd | 4 numform-0.5.0/numform/man/f_12_hour.Rd | 9 numform-0.5.0/numform/man/f_bin.Rd |only numform-0.5.0/numform/man/f_data.Rd |only numform-0.5.0/numform/man/f_data_abbreviation.Rd |only numform-0.5.0/numform/man/f_degree.Rd | 5 numform-0.5.0/numform/man/f_denom.Rd | 76 ++ numform-0.5.0/numform/man/f_list.Rd |only numform-0.5.0/numform/man/f_logical.Rd | 10 numform-0.5.0/numform/man/f_month.Rd | 62 + numform-0.5.0/numform/man/f_percent.Rd | 26 numform-0.5.0/numform/man/f_quarter.Rd | 6 numform-0.5.0/numform/man/f_weekday.Rd | 62 + numform-0.5.0/numform/man/fv_percent.Rd | 1 numform-0.5.0/numform/man/fv_percent_diff.Rd | 13 numform-0.5.0/numform/man/fv_percent_lead.Rd |only numform-0.5.0/numform/man/highlight_cells.Rd |only numform-0.5.0/numform/man/reexports.Rd |only numform-0.5.0/numform/tools/figure/unnamed-chunk-15-1.png |binary numform-0.5.0/numform/tools/figure/unnamed-chunk-16-1.png |binary numform-0.5.0/numform/tools/figure/unnamed-chunk-17-1.png |binary numform-0.5.0/numform/tools/figure/unnamed-chunk-18-1.png |binary numform-0.5.0/numform/tools/figure/unnamed-chunk-19-1.png |binary numform-0.5.0/numform/tools/figure/unnamed-chunk-20-1.png |only numform-0.5.0/numform/tools/figure/unnamed-chunk-21-1.png |binary numform-0.5.0/numform/tools/figure/unnamed-chunk-22-1.png |binary 62 files changed, 1487 insertions(+), 185 deletions(-)
Title: Simple Fisheries Stock Assessment Methods
Description: A variety of simple fish stock assessment methods.
Detailed vignettes are available on the fishR website <http://derekogle.com/fishR/>.
Author: Derek Ogle [aut, cre] (<https://orcid.org/0000-0002-0370-9299>),
Powell Wheeler [aut] (Added method='Burnham' to removal()),
Alexis Dinno [aut] (Provided base functionality of dunnTest())
Maintainer: Derek Ogle <derek@derekogle.com>
Diff between FSA versions 0.8.20 dated 2018-05-17 and 0.8.21 dated 2018-11-03
DESCRIPTION | 28 MD5 | 317 ++++----- NEWS.md | 52 + R/BluegillJL.R | 3 R/BrookTroutTH.R | 3 R/ChinookArg.R | 5 R/CodNorwegian.R | 5 R/CutthroatAL.R | 3 R/Ecoli.R | 2 R/FSA-internals.R | 37 - R/FSAUtils.R | 122 ++- R/Mirex.R | 5 R/PSDlit.R | 1 R/PikeNY.R | 3 R/PikeNYPartial1.R | 3 R/SMBassLS.R | 3 R/SMBassWB.R | 3 R/SpotVA1.R | 3 R/WR79.R | 1 R/WSlit.R | 1 R/WhitefishLC.R | 3 R/addZeroCatch.R | 91 +- R/ageComparisons.R | 871 ++++++++++++++------------ R/alkIndivAge.R | 106 +-- R/alkPlot.R | 31 R/alkSummaries.R | 84 +- R/bootstrap.R | 55 - R/capHistConvert.R | 33 R/capHistSum.R | 7 R/catchCurve.R | 1 R/chapmanRobson.R | 6 R/comparisonsDVR.R | 14 R/depletion.R | 2 R/dunnTest.R | 13 R/expandCounts.R | 7 R/fitPlot.R | 2 R/growthModels.R | 112 ++- R/hist.formula.R | 41 - R/lencat.R | 1 R/lwCompPreds.R | 22 R/mrClosed.R | 10 R/mrOpen.R | 7 R/nlsTracePlot.R | 4 R/psdCalc.R | 12 R/psdPlot.R | 3 R/removal.R | 190 ++++- R/residPlot.R | 67 -- R/srStarts.R | 1 R/stockRecruitment.R | 5 R/vbStarts.R | 1 data/SMBassWB.rdata |binary inst/CITATION | 4 man/BluegillJL.Rd | 6 man/BrookTroutTH.Rd | 6 man/ChinookArg.Rd | 8 man/CodNorwegian.Rd | 8 man/CutthroatAL.Rd | 7 man/Ecoli.Rd | 5 man/Mirex.Rd | 7 man/PSDlit.Rd | 5 man/PikeNY.Rd | 6 man/PikeNYPartial1.Rd | 6 man/SMBassLS.Rd | 6 man/SMBassWB.Rd | 7 man/SpotVA1.Rd | 7 man/Subset.Rd | 1 man/Summarize.Rd | 2 man/WR79.Rd | 5 man/WSlit.Rd | 5 man/WhitefishLC.Rd | 6 man/addZeroCatch.Rd | 72 +- man/ageBias.Rd | 92 -- man/agePrecision.Rd | 67 +- man/alkAgeDist.Rd | 25 man/alkIndivAge.Rd | 73 +- man/alkMeanVar.Rd | 23 man/alkPlot.Rd | 16 man/binCI.Rd | 4 man/bootCase.Rd | 21 man/capHistConvert.Rd | 36 - man/capHistSum.Rd | 8 man/catchCurve.Rd | 25 man/chapmanRobson.Rd | 21 man/compIntercepts.Rd | 7 man/compSlopes.Rd | 2 man/depletion.Rd | 19 man/dunnTest.Rd | 11 man/expandCounts.Rd | 11 man/extraTests.Rd | 3 man/fishR.Rd | 15 man/fitPlot.Rd | 35 - man/fsaNews.Rd | 10 man/geomean.Rd | 7 man/growthModels.Rd | 64 + man/hist.formula.Rd | 31 man/histFromSum.Rd | 3 man/hoCoef.Rd | 4 man/knitUtil.Rd | 7 man/ksTest.Rd | 6 man/lencat.Rd | 8 man/logbtcf.Rd | 2 man/lwCompPreds.Rd | 25 man/metaM.Rd | 2 man/mrClosed.Rd | 16 man/mrOpen.Rd | 8 man/nlsBoot.Rd | 10 man/nlsTracePlot.Rd | 4 man/plotAB.Rd |only man/plotBinResp.Rd | 11 man/poiCI.Rd | 4 man/psdAdd.Rd | 6 man/psdCalc.Rd | 6 man/psdPlot.Rd | 10 man/psdVal.Rd | 4 man/rSquared.Rd | 9 man/rcumsum.Rd | 1 man/removal.Rd | 44 - man/residPlot.Rd | 62 - man/srStarts.Rd | 1 man/stockRecruitment.Rd | 2 man/sumTable.Rd | 1 man/vbStarts.Rd | 1 man/wrAdd.Rd | 3 tests/testthat/EXS_AgeLengthKey.R | 1 tests/testthat/EXS_CatchCurve.R | 1 tests/testthat/EXS_bootstrap.R | 2 tests/testthat/EXS_comparisonsDVR.R | 1 tests/testthat/EXS_mrOpen.R | 1 tests/testthat/Rplots.pdf |binary tests/testthat/test_AgeComparisons_MSG.R | 8 tests/testthat/test_AgeComparisons_OUT.R | 25 tests/testthat/test_AgeComparisons_VALIDATE.R | 41 - tests/testthat/test_AgeLengthKey_VALIDATE.R | 4 tests/testthat/test_CatchCurve_VALIDATE.R | 2 tests/testthat/test_FSAUtils_MSG.R | 18 tests/testthat/test_Internals.R | 20 tests/testthat/test_LWCompPreds_MSG.R | 1 tests/testthat/test_LWCompPreds_OUT.R | 1 tests/testthat/test_PSD_MSG.R | 22 tests/testthat/test_StockRecruit_MSG.R | 25 tests/testthat/test_StockRecruit_OUT.R | 1 tests/testthat/test_VonBertalanffy_MSG.R | 4 tests/testthat/test_VonBertalanffy_OUT.R | 2 tests/testthat/test_VonBertalanffy_VALIDATE.R | 9 tests/testthat/test_WSWR_OUT.R | 1 tests/testthat/test_depletion_OUT.R | 1 tests/testthat/test_depletion_VALIDATE.R | 20 tests/testthat/test_dunnTest_VALIDATE.R | 7 tests/testthat/test_growthFuns_OUT.R | 2 tests/testthat/test_histFormula_MSG.R | 1 tests/testthat/test_histFormula_OUT.R | 1 tests/testthat/test_ksTest_MSG.R | 1 tests/testthat/test_mrClosed_MSG.R | 10 tests/testthat/test_mrClosed_OUT.R | 8 tests/testthat/test_mrClosed_VALIDATE.R | 23 tests/testthat/test_nlsTracePlot_MSG.R | 1 tests/testthat/test_nlsTracePlot_OUT.R | 6 tests/testthat/test_removal_MSG.R | 9 tests/testthat/test_removal_OUT.R | 6 tests/testthat/test_removal_VALIDATE.R | 39 - 160 files changed, 2089 insertions(+), 1703 deletions(-)
Title: Extensions for 'ggplot2': Custom Geom, Plot Alignment,
Symmetrised Scale, and Fixed Panel Size
Description: Miscellaneous functions to help customise 'ggplot2' objects. High-level functions are provided to post-process 'ggplot2' layouts and allow alignment between plot panels, as well as setting panel sizes to fixed values. Other functions include a custom 'geom', and helper functions to enforce symmetric scales or add tags to facetted plots.
Author: Baptiste Auguie [aut, cre]
Maintainer: Baptiste Auguie <baptiste.auguie@gmail.com>
Diff between egg versions 0.4.0 dated 2018-06-17 and 0.4.2 dated 2018-11-03
DESCRIPTION | 10 MD5 | 54 +-- NAMESPACE | 10 R/expose_layout.r | 69 ++-- R/geom_custom.r | 62 ---- R/gtable_frame.r | 570 +++++++++++++++++-------------------- R/set_panel_size.r | 47 +-- R/symmetrise_scale.r | 52 +-- R/tag_facet.r |only R/theme_article.r |only build/vignette.rds |binary inst/NEWS.md | 16 + inst/doc/Ecosystem.html | 24 - inst/doc/Overview.R | 6 inst/doc/Overview.Rmd | 6 inst/doc/Overview.html | 28 - man/expose_layout.Rd | 8 man/geom_custom.Rd | 5 man/ggarrange.Rd | 13 man/gtable_frame.Rd | 10 man/set_panel_size.Rd | 3 man/symmetrise_scale.Rd | 4 man/tag_facet.Rd |only man/theme_article.Rd |only tools/README/custompics-1.png |binary tools/README/ggarrange-1.png |binary tools/README/ggarrangelabels-1.png |binary tools/README/layout-1.png |binary tools/README/panel-1.png |binary vignettes/Overview.Rmd | 6 30 files changed, 477 insertions(+), 526 deletions(-)