Title: R Interface to Stan
Description: User-facing R functions are provided to parse, compile, test,
estimate, and analyze Stan models by accessing the header-only Stan library
provided by the 'StanHeaders' package. The Stan project develops a probabilistic
programming language that implements full Bayesian statistical inference
via Markov Chain Monte Carlo, rough Bayesian inference via 'variational'
approximation, and (optionally penalized) maximum likelihood estimation via
optimization. In all three cases, automatic differentiation is used to quickly
and accurately evaluate gradients without burdening the user with the need to
derive the partial derivatives.
Author: Jiqiang Guo [aut],
Jonah Gabry [aut],
Ben Goodrich [cre, aut],
Daniel Lee [ctb],
Krzysztof Sakrejda [ctb],
Modrak Martin [ctb],
Trustees of Columbia University [cph],
Oleg Sklyar [cph] (R/cxxfunplus.R),
The R Core Team [cph] (R/pairs.R, R/dynGet.R),
Jens Oehlschlaegel-Akiyoshi [cph] (R/pairs.R)
Maintainer: Ben Goodrich <benjamin.goodrich@columbia.edu>
Diff between rstan versions 2.18.1 dated 2018-10-16 and 2.18.2 dated 2018-11-07
DESCRIPTION | 14 +-- MD5 | 50 ++++++------ R/cxxfunplus.R | 47 ++++++++++- R/expose_stan_functions.R | 56 +++++++++++-- R/makefile_op.R | 39 +++------ R/misc.R | 20 ++++ R/options.R | 2 R/rstan.R | 30 +++++-- R/stanc.R | 18 +++- R/stanfit-class.R | 4 R/stanmodel-class.R | 30 ++++--- R/zzz.R | 6 + inst/NEWS | 15 +++ inst/doc/external.R | 11 +- inst/doc/external.Rmd | 66 ++++++---------- inst/doc/external.html | 59 ++++++-------- inst/doc/rstan.html | 148 ++++++++++++++++++------------------ inst/doc/stanfit-objects.html | 164 ++++++++++++++++++++-------------------- inst/include/rstan/logger.hpp | 60 +++++++++----- inst/include/rstan/stan_fit.hpp | 4 man/expose_stan_functions.Rd | 6 + man/rstan.Rd | 6 - man/stan_model.Rd | 7 + man/stanmodel-class.Rd | 6 + vignettes/external.Rmd | 66 ++++++---------- vignettes/sinc.hpp | 13 +-- 26 files changed, 542 insertions(+), 405 deletions(-)
Title: Overlays on Static Maps
Description: Serves two purposes: (i) Provide a
comfortable R interface to query the Google server for static
maps, and (ii) Use the map as a background image to overlay
plots within R. This requires proper coordinate scaling.
Author: Markus Loecher
Maintainer: Markus Loecher <markus.loecher@gmail.com>
Diff between RgoogleMaps versions 1.4.2 dated 2018-06-08 and 1.4.3 dated 2018-11-07
RgoogleMaps-1.4.2/RgoogleMaps/man/RgoogleMaps-package.Rd |only RgoogleMaps-1.4.3/RgoogleMaps/DESCRIPTION | 8 RgoogleMaps-1.4.3/RgoogleMaps/MD5 | 57 +- RgoogleMaps-1.4.3/RgoogleMaps/R/ColorMap.R | 16 RgoogleMaps-1.4.3/RgoogleMaps/R/GetMap.R | 132 ++--- RgoogleMaps-1.4.3/RgoogleMaps/R/GetMap.bbox.R | 33 - RgoogleMaps-1.4.3/RgoogleMaps/R/GetOsmMap.R | 2 RgoogleMaps-1.4.3/RgoogleMaps/R/PlotArrowsOnStaticMap.R | 5 RgoogleMaps-1.4.3/RgoogleMaps/R/PlotOnStaticMap.R | 39 - RgoogleMaps-1.4.3/RgoogleMaps/R/PlotPolysOnStaticMap.R | 2 RgoogleMaps-1.4.3/RgoogleMaps/R/RGB2GRAY.R | 2 RgoogleMaps-1.4.3/RgoogleMaps/R/SpatialToPBS.R | 26 - RgoogleMaps-1.4.3/RgoogleMaps/R/TextOnStaticMap.R | 25 - RgoogleMaps-1.4.3/RgoogleMaps/R/bubbleMap.R | 19 RgoogleMaps-1.4.3/RgoogleMaps/R/getGeoCode.R | 15 RgoogleMaps-1.4.3/RgoogleMaps/R/plotmap.R | 2 RgoogleMaps-1.4.3/RgoogleMaps/man/ColorMap.Rd | 16 RgoogleMaps-1.4.3/RgoogleMaps/man/GetMap.Rd | 325 ++++--------- RgoogleMaps-1.4.3/RgoogleMaps/man/GetMap.bbox.Rd | 21 RgoogleMaps-1.4.3/RgoogleMaps/man/GetOsmMap.Rd | 2 RgoogleMaps-1.4.3/RgoogleMaps/man/NYleukemia.Rd | 3 RgoogleMaps-1.4.3/RgoogleMaps/man/PlotArrowsOnStaticMap.Rd | 7 RgoogleMaps-1.4.3/RgoogleMaps/man/PlotOnStaticMap.Rd | 174 ++++-- RgoogleMaps-1.4.3/RgoogleMaps/man/PlotPolysOnStaticMap.Rd | 2 RgoogleMaps-1.4.3/RgoogleMaps/man/RGB2GRAY.Rd | 2 RgoogleMaps-1.4.3/RgoogleMaps/man/SpatialToPBS.Rd | 26 - RgoogleMaps-1.4.3/RgoogleMaps/man/TextOnStaticMap.Rd | 25 - RgoogleMaps-1.4.3/RgoogleMaps/man/bubbleMap.Rd | 17 RgoogleMaps-1.4.3/RgoogleMaps/man/getGeoCode.Rd | 15 RgoogleMaps-1.4.3/RgoogleMaps/man/plotmap.Rd | 2 30 files changed, 499 insertions(+), 521 deletions(-)
Title: Client for the 'Alteryx Promote' API
Description: Deploy, maintain, and invoke predictive models using the 'Alteryx
Promote' REST API. 'Alteryx Promote' is available at the URL:
<https://www.alteryx.com/products/alteryx-promote>.
Author: Paul E. Promote <promotedev@alteryx.com>
Maintainer: Paul E. Promote <promotedev@alteryx.com>
Diff between promote versions 1.0.2 dated 2018-04-20 and 1.1.0 dated 2018-11-07
DESCRIPTION | 11 +++++----- MD5 | 12 +++++------ R/deps.R | 37 ++++++++++++++++++++++++++++++++---- R/promote.R | 50 ++++++++++++++++++++++++++++++++++++------------- man/add.dependency.Rd | 6 ++++- man/promote.library.Rd | 24 +++++++++++++++++++---- man/promote.post.Rd | 3 +- 7 files changed, 109 insertions(+), 34 deletions(-)
Title: Seamless R and C++ Integration
Description: The 'Rcpp' package provides R functions as well as C++ classes which
offer a seamless integration of R and C++. Many R data types and objects can be
mapped back and forth to C++ equivalents which facilitates both writing of new
code as well as easier integration of third-party libraries. Documentation
about 'Rcpp' is provided by several vignettes included in this package, via the
'Rcpp Gallery' site at <http://gallery.rcpp.org>, the paper by Eddelbuettel and
Francois (2011, <doi:10.18637/jss.v040.i08>), the book by Eddelbuettel (2013,
<doi:10.1007/978-1-4614-6868-4>) and the paper by Eddelbuettel and Balamuta (2018,
<doi:10.1080/00031305.2017.1375990>); see 'citation("Rcpp")' for details.
Author: Dirk Eddelbuettel, Romain Francois, JJ Allaire, Kevin Ushey, Qiang Kou,
Nathan Russell, Douglas Bates and John Chambers
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between Rcpp versions 0.12.19 dated 2018-10-01 and 1.0.0 dated 2018-11-07
Rcpp-0.12.19/Rcpp/inst/doc/Rcpp-unitTests.R |only Rcpp-0.12.19/Rcpp/inst/doc/Rcpp-unitTests.Rnw |only Rcpp-0.12.19/Rcpp/inst/doc/Rcpp-unitTests.pdf |only Rcpp-0.12.19/Rcpp/vignettes/Rcpp-unitTests.Rnw |only Rcpp-1.0.0/Rcpp/ChangeLog | 83 +++++++++++++++++ Rcpp-1.0.0/Rcpp/DESCRIPTION | 8 - Rcpp-1.0.0/Rcpp/MD5 | 69 ++++++-------- Rcpp-1.0.0/Rcpp/R/Attributes.R | 6 + Rcpp-1.0.0/Rcpp/README.md | 10 +- Rcpp-1.0.0/Rcpp/build/vignette.rds |binary Rcpp-1.0.0/Rcpp/inst/NEWS.Rd | 49 +++++++++- Rcpp-1.0.0/Rcpp/inst/bib/Rcpp.bib | 2 Rcpp-1.0.0/Rcpp/inst/doc/Rcpp-FAQ.pdf |binary Rcpp-1.0.0/Rcpp/inst/doc/Rcpp-attributes.pdf |binary Rcpp-1.0.0/Rcpp/inst/doc/Rcpp-extending.Rmd | 8 - Rcpp-1.0.0/Rcpp/inst/doc/Rcpp-extending.pdf |binary Rcpp-1.0.0/Rcpp/inst/doc/Rcpp-introduction.pdf |binary Rcpp-1.0.0/Rcpp/inst/doc/Rcpp-jss-2011.pdf |binary Rcpp-1.0.0/Rcpp/inst/doc/Rcpp-modules.pdf |binary Rcpp-1.0.0/Rcpp/inst/doc/Rcpp-package.pdf |binary Rcpp-1.0.0/Rcpp/inst/doc/Rcpp-quickref.pdf |binary Rcpp-1.0.0/Rcpp/inst/doc/Rcpp-sugar.pdf |binary Rcpp-1.0.0/Rcpp/inst/doc/Rcpp.bib | 2 Rcpp-1.0.0/Rcpp/inst/include/Rcpp/String.h | 23 +++- Rcpp-1.0.0/Rcpp/inst/include/Rcpp/config.h | 4 Rcpp-1.0.0/Rcpp/inst/include/Rcpp/date_datetime/Date.h | 2 Rcpp-1.0.0/Rcpp/inst/include/Rcpp/exceptions.h | 1 Rcpp-1.0.0/Rcpp/inst/include/Rcpp/vector/Matrix.h | 4 Rcpp-1.0.0/Rcpp/inst/unitTests/cpp/Matrix.cpp | 19 +++ Rcpp-1.0.0/Rcpp/inst/unitTests/cpp/String.cpp | 6 + Rcpp-1.0.0/Rcpp/inst/unitTests/runit.Matrix.R | 62 +++++++----- Rcpp-1.0.0/Rcpp/inst/unitTests/runit.String.R | 4 Rcpp-1.0.0/Rcpp/man/RcppUnitTests.Rd | 6 - Rcpp-1.0.0/Rcpp/tests/doRUnit.R | 62 +++++------- Rcpp-1.0.0/Rcpp/vignettes/Rcpp-extending.Rmd | 8 - Rcpp-1.0.0/Rcpp/vignettes/Rcpp-unitTests.pdf |only Rcpp-1.0.0/Rcpp/vignettes/Rcpp.bib | 2 Rcpp-1.0.0/Rcpp/vignettes/figures/bootstrap.pdf |binary 38 files changed, 303 insertions(+), 137 deletions(-)
Title: Help for Writing Unit Tests Based on Function Examples
Description: Take the examples written in your documentation of functions and
use them to create shells (skeletons which must be manually completed by
the user) of test files to be tested with the 'testthat' package.
Author: Rory Nolan [aut, cre] (<https://orcid.org/0000-0002-5239-4043>),
Sergi Padilla-Parra [ths] (<https://orcid.org/0000-0002-8010-9481>),
Thomas Quinn [rev] (<https://orcid.org/0000-0003-0286-6329>),
Laurent Gatto [rev] (<https://orcid.org/0000-0002-1520-2268>)
Maintainer: Rory Nolan <rorynoolan@gmail.com>
Diff between exampletestr versions 1.4.0 dated 2018-09-27 and 1.4.1 dated 2018-11-07
DESCRIPTION | 18 ++-- MD5 | 38 +++++----- NAMESPACE | 1 NEWS.md | 7 + R/exampletestr.R | 1 R/exemplar.R | 22 +++--- inst/doc/one-file-at-a-time.R | 34 +++++---- inst/doc/one-file-at-a-time.Rmd | 42 +++++++---- inst/doc/one-file-at-a-time.html | 127 +++++++++++++++++++---------------- inst/doc/one-function-at-a-time.R | 31 +++++--- inst/doc/one-function-at-a-time.Rmd | 39 ++++++---- inst/doc/one-function-at-a-time.html | 126 ++++++++++++++++++---------------- inst/doc/whole-package.R | 31 +++++--- inst/doc/whole-package.Rmd | 37 ++++++---- inst/doc/whole-package.html | 124 ++++++++++++++++++---------------- man/make-test-shells.Rd | 4 - tests/testthat/test-exemplar.R | 10 +- vignettes/one-file-at-a-time.Rmd | 42 +++++++---- vignettes/one-function-at-a-time.Rmd | 39 ++++++---- vignettes/whole-package.Rmd | 37 ++++++---- 20 files changed, 470 insertions(+), 340 deletions(-)
Title: A Lightweight Interface for Interacting with Elasticsearch from
R
Description: A lightweight R interface to 'Elasticsearch' - a NoSQL search-engine and
column store database (see <https://www.elastic.co/products/elasticsearch> for more
information). This package implements a simple Domain-Specific Language (DSL) for indexing,
deleting, querying, sorting and aggregating data using 'Elasticsearch'.
Author: Alex Ioannides
Maintainer: Alex Ioannides <alex.ioannides@yahoo.co.uk>
Diff between elasticsearchr versions 0.2.2 dated 2018-03-29 and 0.2.3 dated 2018-11-07
elasticsearchr-0.2.2/elasticsearchr/man/valid_url.Rd |only elasticsearchr-0.2.3/elasticsearchr/DESCRIPTION | 10 +- elasticsearchr-0.2.3/elasticsearchr/MD5 | 22 ++-- elasticsearchr-0.2.3/elasticsearchr/NEWS.md | 5 + elasticsearchr-0.2.3/elasticsearchr/R/api.R | 14 ++- elasticsearchr-0.2.3/elasticsearchr/R/utils.R | 46 +++++++--- elasticsearchr-0.2.3/elasticsearchr/build/vignette.rds |binary elasticsearchr-0.2.3/elasticsearchr/inst/doc/quick_start.html | 4 elasticsearchr-0.2.3/elasticsearchr/man/create_bulk_upload_file.Rd | 1 elasticsearchr-0.2.3/elasticsearchr/man/extract_query_results.Rd | 1 elasticsearchr-0.2.3/elasticsearchr/man/valid_connection.Rd |only elasticsearchr-0.2.3/elasticsearchr/tests/testthat/test-api.R | 12 ++ elasticsearchr-0.2.3/elasticsearchr/tests/testthat/test-utils.R | 38 ++------ 13 files changed, 91 insertions(+), 62 deletions(-)
More information about elasticsearchr at CRAN
Permanent link
Title: Serializable Representations
Description: String and binary representations of objects for several formats /
mime types.
Author: Philipp Angerer [aut, cre],
Thomas Kluyver [aut],
Jan Schulz [aut],
abielr [ctb],
Denilson Figueiredo de Sa [ctb],
Jim Hester [ctb],
karldw [ctb],
Dave Foster [ctb],
Carson Sievert [ctb]
Maintainer: Philipp Angerer <phil.angerer@gmail.com>
Diff between repr versions 0.15.0 dated 2018-05-18 and 0.17 dated 2018-11-07
repr-0.15.0/repr/tests/testthat/test_array_df.r |only repr-0.15.0/repr/tests/testthat/test_list.r |only repr-0.15.0/repr/tests/testthat/test_vector.r |only repr-0.17/repr/DESCRIPTION | 12 +++++---- repr-0.17/repr/MD5 | 21 ++++++++-------- repr-0.17/repr/R/repr_htmlwidget.r | 5 +-- repr-0.17/repr/R/repr_list.r | 2 - repr-0.17/repr/R/utils.r | 16 ++++++++++++ repr-0.17/repr/README.md | 2 - repr-0.17/repr/man/repr_-times-.recordedplot.Rd | 24 ++++++++++++------- repr-0.17/repr/tests/testthat/test_repr_array_df.r |only repr-0.17/repr/tests/testthat/test_repr_htmlwidget.r | 9 +++++++ repr-0.17/repr/tests/testthat/test_repr_list.r |only repr-0.17/repr/tests/testthat/test_repr_vector.r |only repr-0.17/repr/tests/testthat/test_utils.r |only 15 files changed, 63 insertions(+), 28 deletions(-)
Title: Miscellaneous Functions Used at 'Numeract LLC'
Description: Contains functions useful for debugging, set operations on vectors,
and 'UTC' date and time functionality. It adds a few vector manipulation
verbs to 'purrr' and 'dplyr' packages. It can also generate an R file to
install and update packages to simplify deployment into production. The
functions were developed at the data science firm 'Numeract LLC' and are
used in several packages and projects.
Author: Mike Badescu [aut, cre],
Ana-Maria Niculescu [aut],
Teodor Ciuraru [ctb],
Numeract LLC [cph]
Maintainer: Mike Badescu <mike.badescu@numeract.com>
Diff between Nmisc versions 0.3.3 dated 2018-08-18 and 0.3.5 dated 2018-11-07
DESCRIPTION | 10 ++-- MD5 | 22 ++++----- NEWS.md | 11 ++++ R/dplyr-misc.R | 13 +++-- R/package.R | 2 R/purrr-misc.R | 74 ++++++++++++++++++++++----------- README.md | 2 man/keep_at.Rd | 29 ++++++++---- man/pull_with_names.Rd | 5 +- tests/testthat/test_dplyr-misc.R | 12 ++++- tests/testthat/test_project_packages.R | 9 ---- tests/testthat/test_purrr.R | 26 ++++------- 12 files changed, 134 insertions(+), 81 deletions(-)
Title: Perform Factorial Analysis from 'FactoMineR' with a Shiny
Application
Description: Perform factorial analysis with a menu and draw graphs interactively thanks to 'FactoMineR' and a Shiny application.
Author: Pauline Vaissie, Astrid Monge, Francois Husson
Maintainer: Francois Husson <husson@agrocampus-ouest.fr>
Diff between Factoshiny versions 1.0.6 dated 2017-12-03 and 1.0.7 dated 2018-11-07
DESCRIPTION | 8 ++++---- MD5 | 24 ++++++++++++------------ build/vignette.rds |binary inst/FactoCAapp2/server.R | 14 ++++++++------ inst/FactoFAMDapp2/server.R | 16 +++++++++------- inst/FactoMCAapp2/server.R | 20 +++++++++++--------- inst/FactoMFAapp/server.R | 2 +- inst/FactoMFAapp/ui.R | 12 ++++++++---- inst/FactoPCAapp2/server.R | 20 +++++++++++--------- inst/doc/Factoshiny.pdf |binary inst/po/fr/LC_MESSAGES/R-Factoshiny.mo |binary po/R-Factoshiny.mo |binary po/R-Factoshiny.po | 10 ++++++++-- 13 files changed, 72 insertions(+), 54 deletions(-)
Title: Interface to 'TensorFlow' Estimators
Description: Interface to 'TensorFlow' Estimators
<https://www.tensorflow.org/programmers_guide/estimators>, a high-level
API that provides implementations of many different model types
including linear models and deep neural networks.
Author: JJ Allaire [aut],
Yuan Tang [aut] (<https://orcid.org/0000-0001-5243-233X>),
Kevin Ushey [aut],
Kevin Kuo [aut, cre] (<https://orcid.org/0000-0001-7803-7901>),
Daniel Falbel [ctb, cph],
RStudio [cph, fnd],
Google Inc. [cph]
Maintainer: Kevin Kuo <kevin.kuo@rstudio.com>
Diff between tfestimators versions 1.9.0 dated 2018-08-27 and 1.9.1 dated 2018-11-07
DESCRIPTION | 12 ++-- MD5 | 69 ++++++++++++++-------------- NAMESPACE | 17 +++++++ NEWS.md | 4 + R/boosted_trees_estimators.R | 40 ++++++++-------- R/dnn_estimators.R | 16 +++--- R/dnn_linear_combined_estimators.R | 16 +++--- R/feature_columns.R | 36 +++++++------- R/imports.R | 1 R/input_fn.R | 20 +++----- R/linear_estimators.R | 8 +-- R/preconditions.R | 77 -------------------------------- R/reexport-tidyselect.R |only R/session_run_hooks_builtin_wrappers.R | 18 +++---- R/tf_estimator.R | 6 +- R/tidyselect.R | 6 -- R/train_and_evaluate.R | 8 +-- inst/doc/creating_estimators.Rmd | 2 inst/doc/creating_estimators.html | 12 ++-- inst/doc/dataset_api.html | 10 +--- inst/doc/estimator_basics.html | 10 +--- inst/doc/feature_columns.html | 10 +--- inst/doc/input_functions.html | 10 +--- inst/doc/parsing_spec.html | 10 +--- inst/doc/run_hooks.html | 10 +--- inst/doc/tensorboard.html | 10 +--- inst/doc/tensorflow_layers.html | 10 +--- man/boosted_trees_estimators.Rd | 2 man/column_categorical_with_identity.Rd | 2 man/column_indicator.Rd | 6 +- man/dnn_estimators.Rd | 2 man/dnn_linear_combined_estimators.Rd | 2 man/estimators.Rd | 2 man/linear_estimators.Rd | 2 man/reexports.Rd | 13 ++++- vignettes/creating_estimators.Rmd | 2 36 files changed, 204 insertions(+), 277 deletions(-)
Title: Easily Create and Style Tables for LaTeX, HTML and Other Formats
Description: Like 'xtable', creates styled tables. Export to HTML, LaTeX, 'Word',
'Excel', 'PowerPoint' and RTF. Simple, modern interface to manipulate
borders, size, position, captions, colours, text styles and number formatting.
Table cells can span multiple rows and/or columns.
Includes a 'huxreg' function for creation of regression tables, and 'quick_*'
one-liners to print data to a new document.
Author: David Hugh-Jones [aut, cre]
Maintainer: David Hugh-Jones <davidhughjones@gmail.com>
Diff between huxtable versions 4.2.1 dated 2018-10-26 and 4.3.0 dated 2018-11-07
huxtable-4.2.1/huxtable/man/where.Rd |only huxtable-4.3.0/huxtable/DESCRIPTION | 14 huxtable-4.3.0/huxtable/MD5 | 302 - huxtable-4.3.0/huxtable/NAMESPACE | 67 huxtable-4.3.0/huxtable/NEWS.md | 30 huxtable-4.3.0/huxtable/R/Workbook.R | 32 huxtable-4.3.0/huxtable/R/bookdown.R |only huxtable-4.3.0/huxtable/R/dplyr.R | 13 huxtable-4.3.0/huxtable/R/flextable.R | 30 huxtable-4.3.0/huxtable/R/get-set-convenience.R | 77 huxtable-4.3.0/huxtable/R/html.R | 86 huxtable-4.3.0/huxtable/R/huxreg.R | 245 - huxtable-4.3.0/huxtable/R/huxtable.R | 65 huxtable-4.3.0/huxtable/R/knitr.R | 66 huxtable-4.3.0/huxtable/R/latex-dependencies.R | 81 huxtable-4.3.0/huxtable/R/latex.R | 248 - huxtable-4.3.0/huxtable/R/manipulation.R | 191 - huxtable-4.3.0/huxtable/R/mapping-functions.R |only huxtable-4.3.0/huxtable/R/misc.R | 128 huxtable-4.3.0/huxtable/R/properties.R | 568 +-- huxtable-4.3.0/huxtable/R/quick-functions.R | 77 huxtable-4.3.0/huxtable/R/row-col-fns.R | 69 huxtable-4.3.0/huxtable/R/roxygen-functions.R |only huxtable-4.3.0/huxtable/R/rtf.R | 148 huxtable-4.3.0/huxtable/R/screen.R | 98 huxtable-4.3.0/huxtable/R/themes.R | 120 huxtable-4.3.0/huxtable/R/utils.R | 85 huxtable-4.3.0/huxtable/R/zzz.R | 90 huxtable-4.3.0/huxtable/README.md | 56 huxtable-4.3.0/huxtable/build/vignette.rds |binary huxtable-4.3.0/huxtable/data |only huxtable-4.3.0/huxtable/inst/doc/design-principles.R | 3 huxtable-4.3.0/huxtable/inst/doc/design-principles.Rmd | 57 huxtable-4.3.0/huxtable/inst/doc/design-principles.html | 12 huxtable-4.3.0/huxtable/inst/doc/huxreg.R | 10 huxtable-4.3.0/huxtable/inst/doc/huxreg.Rmd | 27 huxtable-4.3.0/huxtable/inst/doc/huxreg.html | 148 huxtable-4.3.0/huxtable/inst/doc/huxtable.R | 238 - huxtable-4.3.0/huxtable/inst/doc/huxtable.Rmd | 444 +- huxtable-4.3.0/huxtable/inst/doc/huxtable.html | 1850 ++++------ huxtable-4.3.0/huxtable/inst/doc/themes.R |only huxtable-4.3.0/huxtable/inst/doc/themes.Rmd |only huxtable-4.3.0/huxtable/inst/doc/themes.html |only huxtable-4.3.0/huxtable/man/add_colnames.Rd | 17 huxtable-4.3.0/huxtable/man/add_footnote.Rd | 6 huxtable-4.3.0/huxtable/man/add_rows.Rd | 20 huxtable-4.3.0/huxtable/man/align.Rd | 30 huxtable-4.3.0/huxtable/man/as_Workbook.Rd | 14 huxtable-4.3.0/huxtable/man/as_flextable.Rd | 6 huxtable-4.3.0/huxtable/man/as_huxtable.Rd | 19 huxtable-4.3.0/huxtable/man/background_color.Rd | 30 huxtable-4.3.0/huxtable/man/bold.Rd | 34 huxtable-4.3.0/huxtable/man/by_cases.Rd |only huxtable-4.3.0/huxtable/man/by_colorspace.Rd |only huxtable-4.3.0/huxtable/man/by_function.Rd |only huxtable-4.3.0/huxtable/man/by_quantiles.Rd |only huxtable-4.3.0/huxtable/man/by_ranges.Rd |only huxtable-4.3.0/huxtable/man/by_regex.Rd |only huxtable-4.3.0/huxtable/man/by_rows.Rd |only huxtable-4.3.0/huxtable/man/by_values.Rd |only huxtable-4.3.0/huxtable/man/caption.Rd | 16 huxtable-4.3.0/huxtable/man/caption_pos.Rd | 17 huxtable-4.3.0/huxtable/man/cbind.huxtable.Rd | 14 huxtable-4.3.0/huxtable/man/col_width.Rd | 9 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Title: Network-Based Interpretation of Changes in Compositional Data
Description: Provides a set of functions to interpret changes in
compositional data based on a network representation of all pairwise ratio
comparisons: computation of all pairwise ratio, construction of a
p-value matrix of all pairwise tests of these ratios between
conditions, conversion of this matrix to a network.
Author: Emmanuel Curis [aut, cre] (<https://orcid.org/0000-0001-8382-1493>)
Maintainer: Emmanuel Curis <emmanuel.curis@parisdescartes.fr>
Diff between SARP.compo versions 0.0.7 dated 2018-05-21 and 0.0.8 dated 2018-11-07
DESCRIPTION | 16 ++-- MD5 | 24 ++++--- NAMESPACE | 14 +++- R/creer_fichier.R |only R/creer_graphe.R | 167 +++++++++++++++++++++++++++++++++++++++++++++++---- R/distances.R |only R/simuler_H0.R | 44 ++++++++++--- R/simuler_H1.R | 37 ++++++++--- data/GADL1.csv.gz |only data/SCH23390.csv.gz |only man/choix_seuil.Rd | 11 ++- man/distance.Rd |only man/fichiers.Rd |only man/gadl1.Rd |only man/poteries.Rd | 4 - man/puissance.Rd | 8 +- man/sch23390.Rd |only 17 files changed, 268 insertions(+), 57 deletions(-)
Title: Compares the Distribution of Sister Clades Through a Phylogeny
Description: An implementation of the nodiv algorithm, see Borregaard, M.K., Rahbek, C., Fjeldsaa, J., Parra, J.L., Whittaker, R.J. & Graham, C.H. 2014. Node-based analysis of species distributions. Methods in Ecology and Evolution 5(11): 1225-1235. <DOI:10.1111/2041-210X.12283>. Package for phylogenetic analysis of species distributions. The main function goes through each node in the phylogeny, compares the distributions of the two descendant nodes, and compares the result to a null model. This highlights nodes where major distributional divergence have occurred. The distributional divergence for these nodes is mapped using the SOS statistic.
Author: Michael Krabbe Borregaard
Maintainer: Michael Krabbe Borregaard <mkborregaard@snm.ku.dk>
Diff between nodiv versions 1.2.0 dated 2018-04-23 and 1.3.0 dated 2018-11-07
DESCRIPTION | 9 +++++---- MD5 | 14 ++++++++------ NAMESPACE | 2 +- R/Methods_for_result_objects.R | 2 +- R/Prepare_result_object.R | 17 ++++++++++------- man/nodiv-package.Rd | 4 ++-- tests/testthat/test_access.R | 18 ++++++++++++++++-- tests/testthat/test_adding.R |only tests/testthat/test_node_analysis.R |only 9 files changed, 43 insertions(+), 23 deletions(-)
Title: Draw Gene Arrow Maps in 'ggplot2'
Description: Provides a 'ggplot2' geom and helper functions for drawing gene
arrow maps.
Author: David Wilkins [aut, cre]
Maintainer: David Wilkins <david@wilkox.org>
Diff between gggenes versions 0.3.1 dated 2018-06-16 and 0.3.2 dated 2018-11-07
DESCRIPTION | 11 +++--- MD5 | 34 +++++++++--------- NEWS.md | 6 +++ R/geom_gene_label.R | 7 +-- R/make_alignment_dummies.R | 10 ++--- build/vignette.rds |binary inst/doc/introduction-to-gggenes.html | 24 ++++++------- man/figures/README-geom_gene_arrow-1.png |binary man/figures/README-labelled_genes-1.png |binary man/figures/README-make_alignment_dummies-1.png |binary man/figures/README-reversing_direction-1.png |binary man/figures/README-theme_genes-1.png |binary man/geom_gene_arrow.Rd | 4 +- man/geom_gene_label.Rd | 5 +- tests/testthat/test-geom_gene_arrow.R | 29 ++++++++++------ tests/testthat/test-geom_gene_label.R | 29 ++++++++++++---- tests/testthat/test-make_alignment_dummies.R | 43 +++++++++++++++--------- tests/testthat/test-theme_genes.R | 30 +++++++++++----- 18 files changed, 142 insertions(+), 90 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-09-28 1.0
Title: Stan-Based Fit to Gastric Emptying Curves
Description: Stan-based curve-fitting function
for use with package 'breathtestcore' by the same author.
Stan functions are refactored here for easier testing.
Author: Dieter Menne [aut, cre],
Menne Biomed Consulting Tuebingen [cph],
Benjamin Misselwitz [fnd],
Mark Fox [fnd],
University Hospital of Zurich, Dep. Gastroenterology [fnd, dtc]
Maintainer: Dieter Menne <dieter.menne@menne-biomed.de>
Diff between breathteststan versions 0.4.6 dated 2018-10-24 and 0.4.7 dated 2018-11-07
DESCRIPTION | 6 +++--- MD5 | 6 +++--- src/Makevars | 2 +- src/Makevars.win | 4 ++-- 4 files changed, 9 insertions(+), 9 deletions(-)
More information about breathteststan at CRAN
Permanent link
Title: World Register of Marine Species (WoRMS) Client
Description: Client for World Register of Marine Species
(<http://www.marinespecies.org/>). Includes functions for each
of the API methods, including searching for names by name, date and
common names, searching using external identifiers, fetching
synonyms, as well as fetching taxonomic children and
taxonomic classification.
Author: Scott Chamberlain [aut, cre] (<https://orcid.org/0000-0003-1444-9135>)
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between worrms versions 0.2.8 dated 2018-05-21 and 0.3.0 dated 2018-11-07
DESCRIPTION | 15 ++-- MD5 | 108 ++++++++++++++++---------------- NEWS.md | 16 ++++ R/wm_attr_aphia.R | 5 - R/wm_attr_category.R | 5 - R/wm_attr_data.R | 5 - R/wm_attr_def.R | 5 - R/wm_children.R | 6 + R/wm_classification.R | 5 - R/wm_common_id.R | 6 - R/wm_distribution.R | 5 - R/wm_externalid.R | 5 - R/wm_id2name.R | 4 - R/wm_name2id.R | 7 +- R/wm_record.R | 5 - R/wm_record_by_external.R | 5 - R/wm_records_common.R | 8 +- R/wm_sources.R | 5 - R/wm_synonyms.R | 5 - R/zzz.R | 30 +++++++- README.md | 105 ++++++++++++++++--------------- build/vignette.rds |binary inst/doc/worrms_vignette.Rmd | 68 ++++++++++---------- inst/doc/worrms_vignette.html | 68 ++++++++++---------- man/wm_attr_aphia.Rd | 4 - man/wm_attr_category.Rd | 4 - man/wm_attr_data.Rd | 4 - man/wm_attr_def.Rd | 4 - man/wm_children.Rd | 8 +- man/wm_classification.Rd | 4 - man/wm_common_id.Rd | 4 - man/wm_distribution.Rd | 4 - man/wm_external.Rd | 4 - man/wm_id2name.Rd | 4 - man/wm_name2id.Rd | 6 - man/wm_record.Rd | 4 - man/wm_record_by_external.Rd | 4 - man/wm_records_common.Rd | 6 - man/wm_records_date.Rd | 2 man/wm_records_name.Rd | 5 - man/wm_records_names.Rd | 2 man/wm_records_taxamatch.Rd | 2 man/wm_sources.Rd | 4 - man/wm_synonyms.Rd | 4 - tests/testthat/test-wm_children.R | 2 tests/testthat/test-wm_common_id.R | 2 tests/testthat/test-wm_distribution.R | 2 tests/testthat/test-wm_external.R | 2 tests/testthat/test-wm_id2name.R | 2 tests/testthat/test-wm_name2id.R | 2 tests/testthat/test-wm_record.R | 2 tests/testthat/test-wm_records_common.R | 2 tests/testthat/test-wm_sources.R | 2 tests/testthat/test-wm_synonyms.R | 2 vignettes/worrms_vignette.Rmd | 68 ++++++++++---------- 55 files changed, 360 insertions(+), 307 deletions(-)
Title: Relational Query Generator for Data Manipulation at Scale
Description: A piped query generator based on Edgar F. Codd's relational
algebra, and on production experience using 'SQL' and 'dplyr' at big data
scale. The design represents an attempt to make 'SQL' more teachable by
denoting composition by a sequential pipeline notation instead of nested
queries or functions. The implementation delivers reliable high
performance data processing on large data systems such as 'Spark',
databases, and 'data.table'. Package features include: data processing trees
or pipelines as observable objects (able to report both columns
produced and columns used), optimized 'SQL' generation as an explicit
user visible modeling step, explicit query reasoning and checking.
Author: John Mount [aut, cre],
Win-Vector LLC [cph]
Maintainer: John Mount <jmount@win-vector.com>
Diff between rquery versions 1.1.1 dated 2018-10-26 and 1.2.0 dated 2018-11-07
DESCRIPTION | 8 +- MD5 | 34 ++++++----- NEWS.md | 7 ++ R/extend.R | 7 +- R/lapply_bquote.R |only R/project.R | 3 + R/select_rows.R | 18 +++++- R/tokenize_for_sql.R | 7 ++ README.md | 14 ++-- inst/doc/AssigmentPartitioner.html | 4 - inst/doc/PipeableSQL.html | 4 - inst/doc/QueryGeneration.html | 4 - inst/doc/rquery_intro.html | 4 - man/extend_nse.Rd | 6 +- man/project_nse.Rd | 2 man/select_rows_nse.Rd | 5 + tests/testthat/test_if_else.R | 38 ++++++------- tests/testthat/test_names.R | 107 +++++++++++++++++++------------------ tests/testthat/test_q.R |only 19 files changed, 158 insertions(+), 114 deletions(-)
Title: In-Line Documentation for R
Description: Generate your Rd documentation, 'NAMESPACE' file, and collation
field using specially formatted comments. Writing documentation in-line
with code makes it easier to keep your documentation up-to-date as your
requirements change. 'Roxygen2' is inspired by the 'Doxygen' system for C++.
Author: Hadley Wickham [aut, cre, cph],
Peter Danenberg [aut, cph],
Manuel Eugster [aut, cph],
RStudio [cph]
Maintainer: Hadley Wickham <hadley@rstudio.com>
Diff between roxygen2 versions 6.1.0 dated 2018-07-27 and 6.1.1 dated 2018-11-07
DESCRIPTION | 14 +++++----- MD5 | 44 ++++++++++++++++++-------------- NEWS.md | 21 +++++++++++---- R/namespace.R | 2 - R/parse.R | 6 +++- R/safety.R | 11 ++++++++ R/source.R | 14 +--------- README.md | 4 +- build/vignette.rds |binary inst/doc/collate.html | 14 ++++------ inst/doc/formatting.html | 14 ++++------ inst/doc/markdown.html | 14 ++++------ inst/doc/namespace.html | 4 +- inst/doc/rd.Rmd | 12 ++++---- inst/doc/rd.html | 22 +++++++--------- inst/doc/rdkeywords.html | 14 ++++------ inst/doc/roxygen2.html | 4 +- tests/testthat/no-desc |only tests/testthat/test-collate.R | 7 ++++- tests/testthat/test-rd-markdown-links.R | 40 +++++++++++------------------ tests/testthat/test-safety.R |only tests/testthat/testCollateParse |only vignettes/rd.Rmd | 12 ++++---- 23 files changed, 141 insertions(+), 132 deletions(-)
Title: Assigns Colours to Values
Description: Maps one of the viridis colour palettes, or a user-specified palette to values.
Viridis colour maps are created by Stéfan van der Walt and Nathaniel Smith.
They were set as the default palette for the 'Python' 'Matplotlib' library,
introduced at SciPy 2015 conference <http://scipy2015.scipy.org/ehome/index.php?eventid=115969&>.
Author: David Cooley [aut, cre]
Maintainer: David Cooley <dcooley@symbolix.com.au>
Diff between colourvalues versions 0.1.1 dated 2018-09-30 and 0.2.0 dated 2018-11-07
colourvalues-0.1.1/colourvalues/R/colour_values.R |only colourvalues-0.1.1/colourvalues/R/scratch.R |only colourvalues-0.1.1/colourvalues/inst/include/colourvalues/convert_colours |only colourvalues-0.1.1/colourvalues/man/Colour.Rd |only colourvalues-0.1.1/colourvalues/man/color_values_rgb.Rd |only colourvalues-0.1.1/colourvalues/src/ColourValues.cpp |only colourvalues-0.1.1/colourvalues/tests/testthat/test-colour_values.R |only colourvalues-0.2.0/colourvalues/DESCRIPTION | 10 colourvalues-0.2.0/colourvalues/MD5 | 86 +- colourvalues-0.2.0/colourvalues/NAMESPACE | 18 colourvalues-0.2.0/colourvalues/NEWS.md |only colourvalues-0.2.0/colourvalues/R/RcppExports.R | 44 + colourvalues-0.2.0/colourvalues/R/colour_values_hex.R |only colourvalues-0.2.0/colourvalues/R/colour_values_rgb.R |only colourvalues-0.2.0/colourvalues/R/colourvalues-package.R | 12 colourvalues-0.2.0/colourvalues/R/convert_colours.R |only colourvalues-0.2.0/colourvalues/R/palettes.R | 3 colourvalues-0.2.0/colourvalues/README.md | 143 +++- colourvalues-0.2.0/colourvalues/inst/include/colourvalues/alpha/alpha.hpp | 2 colourvalues-0.2.0/colourvalues/inst/include/colourvalues/colours.hpp | 2 colourvalues-0.2.0/colourvalues/inst/include/colourvalues/colours/colours_hex.hpp | 161 +++- colourvalues-0.2.0/colourvalues/inst/include/colourvalues/colours/colours_rgb.hpp | 150 +++- colourvalues-0.2.0/colourvalues/inst/include/colourvalues/convert |only colourvalues-0.2.0/colourvalues/inst/include/colourvalues/format |only colourvalues-0.2.0/colourvalues/inst/include/colourvalues/palettes/cvidis.hpp | 217 +++--- colourvalues-0.2.0/colourvalues/inst/include/colourvalues/palettes/inferno.hpp | 341 ++++------ colourvalues-0.2.0/colourvalues/inst/include/colourvalues/palettes/magma.hpp | 341 ++++------ colourvalues-0.2.0/colourvalues/inst/include/colourvalues/palettes/plasma.hpp | 341 ++++------ colourvalues-0.2.0/colourvalues/inst/include/colourvalues/palettes/viridis.hpp | 287 ++++---- colourvalues-0.2.0/colourvalues/inst/include/colourvalues/scale/scale.hpp | 36 - colourvalues-0.2.0/colourvalues/inst/include/colourvalues/summary |only colourvalues-0.2.0/colourvalues/inst/include/colourvalues/utils/utils.hpp | 6 colourvalues-0.2.0/colourvalues/man/colour_values.Rd | 81 ++ colourvalues-0.2.0/colourvalues/man/colour_values_rgb.Rd | 74 +- colourvalues-0.2.0/colourvalues/man/convert_colour.Rd |only colourvalues-0.2.0/colourvalues/man/figures/README-unnamed-chunk-10-1.png |binary colourvalues-0.2.0/colourvalues/man/figures/README-unnamed-chunk-11-1.png |binary colourvalues-0.2.0/colourvalues/man/figures/README-unnamed-chunk-12-1.png |binary colourvalues-0.2.0/colourvalues/man/figures/README-unnamed-chunk-13-1.png |only colourvalues-0.2.0/colourvalues/man/figures/README-unnamed-chunk-14-1.png |only colourvalues-0.2.0/colourvalues/man/figures/README-unnamed-chunk-15-1.png |only colourvalues-0.2.0/colourvalues/man/figures/README-unnamed-chunk-16-1.png |only colourvalues-0.2.0/colourvalues/man/figures/README-unnamed-chunk-17-1.png |only colourvalues-0.2.0/colourvalues/man/figures/README-unnamed-chunk-3-1.png |binary colourvalues-0.2.0/colourvalues/man/figures/README-unnamed-chunk-4-1.png |binary colourvalues-0.2.0/colourvalues/man/figures/README-unnamed-chunk-5-1.png |binary colourvalues-0.2.0/colourvalues/man/figures/README-unnamed-chunk-6-1.png |binary colourvalues-0.2.0/colourvalues/man/figures/README-unnamed-chunk-7-1.png |binary colourvalues-0.2.0/colourvalues/man/figures/README-unnamed-chunk-8-1.png |binary colourvalues-0.2.0/colourvalues/man/figures/README-unnamed-chunk-9-1.png |binary colourvalues-0.2.0/colourvalues/src/ColourValues_HEX.cpp |only colourvalues-0.2.0/colourvalues/src/ColourValues_RGB.cpp |only colourvalues-0.2.0/colourvalues/src/ConvertColours.cpp |only colourvalues-0.2.0/colourvalues/src/RcppExports.cpp | 180 +++++ colourvalues-0.2.0/colourvalues/tests/testthat/test-colour_values_hex.R |only colourvalues-0.2.0/colourvalues/tests/testthat/test-colour_values_rgb.R |only colourvalues-0.2.0/colourvalues/tests/testthat/test-convert_colours.R |only 57 files changed, 1617 insertions(+), 918 deletions(-)