Title: R Interface to the Giphy API
Description: An interface to the 'API' of 'Giphy', a popular index-based search
engine for 'GIFs' and animated stickers (see <http://giphy.com/faq> and
<https://github.com/Giphy/GiphyAPI> for more information about 'Giphy' and
its 'API') . This package also provides a 'RStudio Addin', which can help
users easily search and download 'GIFs' and insert them to a 'rmarkdown'
presentation.
Author: Hao Zhu [aut, cre] (<https://orcid.org/0000-0002-3386-6076>)
Maintainer: Hao Zhu <haozhu233@gmail.com>
Diff between giphyr versions 0.1.2 dated 2017-10-21 and 0.1.3 dated 2018-11-14
DESCRIPTION | 14 ++++++++------ MD5 | 14 +++++++------- NAMESPACE | 2 ++ R/gif_Addin.R | 3 +-- R/gif_search.R | 6 +++++- R/giphyr-package.R | 4 ++-- README.md | 2 ++ man/gif_search.Rd | 9 +++++---- 8 files changed, 32 insertions(+), 22 deletions(-)
Title: Create Interactive Graphs with 'Echarts JavaScript' Version 4
Description: Easily create interactive charts by leveraging the 'Echarts Javascript' library which includes
34 chart types, themes, 'Shiny' proxies and animations.
Author: John Coene [aut, cre]
Maintainer: John Coene <jcoenep@gmail.com>
Diff between echarts4r versions 0.1.1 dated 2018-09-17 and 0.2.0 dated 2018-11-14
echarts4r-0.1.1/echarts4r/R/grp.R |only echarts4r-0.1.1/echarts4r/R/timeline.R |only echarts4r-0.1.1/echarts4r/inst/assets |only echarts4r-0.1.1/echarts4r/inst/htmlwidgets/lib/echarts-4.0.4 |only echarts4r-0.1.1/echarts4r/man/e_angle_axis.Rd |only echarts4r-0.1.1/echarts4r/man/e_keras_history.Rd |only echarts4r-0.1.1/echarts4r/man/e_radius_axis.Rd |only echarts4r-0.1.1/echarts4r/man/textures.Rd |only echarts4r-0.2.0/echarts4r/DESCRIPTION | 17 echarts4r-0.2.0/echarts4r/MD5 | 298 echarts4r-0.2.0/echarts4r/NAMESPACE | 376 - echarts4r-0.2.0/echarts4r/NEWS.md | 190 echarts4r-0.2.0/echarts4r/R/actions.R |only echarts4r-0.2.0/echarts4r/R/add.R | 3340 +++++------ echarts4r-0.2.0/echarts4r/R/add_.R | 2476 ++++---- echarts4r-0.2.0/echarts4r/R/append.R | 224 echarts4r-0.2.0/echarts4r/R/button.R |only echarts4r-0.2.0/echarts4r/R/calendar.R | 74 echarts4r-0.2.0/echarts4r/R/callbacks.R |only echarts4r-0.2.0/echarts4r/R/color.R | 54 echarts4r-0.2.0/echarts4r/R/echarts4r.R | 463 - echarts4r-0.2.0/echarts4r/R/geo.R | 210 echarts4r-0.2.0/echarts4r/R/globe.R | 85 echarts4r-0.2.0/echarts4r/R/graphic.R |only echarts4r-0.2.0/echarts4r/R/grid.R | 589 + echarts4r-0.2.0/echarts4r/R/grid3d.R | 260 echarts4r-0.2.0/echarts4r/R/group2series.R | 78 echarts4r-0.2.0/echarts4r/R/helpers.R | 478 - echarts4r-0.2.0/echarts4r/R/leaflet.R | 114 echarts4r-0.2.0/echarts4r/R/loading.R | 178 echarts4r-0.2.0/echarts4r/R/map.R | 431 - echarts4r-0.2.0/echarts4r/R/mark.R | 231 echarts4r-0.2.0/echarts4r/R/nesting.R |only echarts4r-0.2.0/echarts4r/R/opts.R | 1156 ++- echarts4r-0.2.0/echarts4r/R/pipes.R | 20 echarts4r-0.2.0/echarts4r/R/plugins.R | 378 - echarts4r-0.2.0/echarts4r/R/proxies.R | 563 + echarts4r-0.2.0/echarts4r/R/themes.R | 122 echarts4r-0.2.0/echarts4r/R/utils.R | 1145 +-- echarts4r-0.2.0/echarts4r/R/zzz.R | 25 echarts4r-0.2.0/echarts4r/README.md | 15 echarts4r-0.2.0/echarts4r/inst/htmlwidgets/echarts4r.js | 452 - echarts4r-0.2.0/echarts4r/inst/htmlwidgets/echarts4r.yaml | 69 echarts4r-0.2.0/echarts4r/inst/htmlwidgets/lib/echarts-4.3.2 |only echarts4r-0.2.0/echarts4r/inst/htmlwidgets/lib/mapbox |only echarts4r-0.2.0/echarts4r/man/angle_axis.Rd |only echarts4r-0.2.0/echarts4r/man/append.Rd | 168 echarts4r-0.2.0/echarts4r/man/axis.Rd | 109 echarts4r-0.2.0/echarts4r/man/axis3d.Rd | 95 echarts4r-0.2.0/echarts4r/man/callbacks.Rd |only echarts4r-0.2.0/echarts4r/man/connections.Rd |only echarts4r-0.2.0/echarts4r/man/e_add.Rd |only echarts4r-0.2.0/echarts4r/man/e_animation.Rd | 86 echarts4r-0.2.0/echarts4r/man/e_area.Rd | 87 echarts4r-0.2.0/echarts4r/man/e_axis_pointer.Rd | 38 echarts4r-0.2.0/echarts4r/man/e_bar.Rd | 84 echarts4r-0.2.0/echarts4r/man/e_bar_3d.Rd | 163 echarts4r-0.2.0/echarts4r/man/e_boxplot.Rd | 80 echarts4r-0.2.0/echarts4r/man/e_brush.Rd | 82 echarts4r-0.2.0/echarts4r/man/e_button.Rd |only echarts4r-0.2.0/echarts4r/man/e_calendar.Rd | 76 echarts4r-0.2.0/echarts4r/man/e_candle.Rd | 100 echarts4r-0.2.0/echarts4r/man/e_clean.Rd | 66 echarts4r-0.2.0/echarts4r/man/e_cloud.Rd | 88 echarts4r-0.2.0/echarts4r/man/e_color.Rd | 68 echarts4r-0.2.0/echarts4r/man/e_color_range.Rd | 62 echarts4r-0.2.0/echarts4r/man/e_country_names.Rd | 74 echarts4r-0.2.0/echarts4r/man/e_datazoom.Rd | 74 echarts4r-0.2.0/echarts4r/man/e_dispatch_action_p.Rd |only echarts4r-0.2.0/echarts4r/man/e_draft.Rd |only echarts4r-0.2.0/echarts4r/man/e_flip_coords.Rd | 60 echarts4r-0.2.0/echarts4r/man/e_flow_gl.Rd | 198 echarts4r-0.2.0/echarts4r/man/e_funnel.Rd | 86 echarts4r-0.2.0/echarts4r/man/e_gauge.Rd | 66 echarts4r-0.2.0/echarts4r/man/e_geo.Rd | 80 echarts4r-0.2.0/echarts4r/man/e_geo_3d.Rd | 94 echarts4r-0.2.0/echarts4r/man/e_get_data.Rd | 28 echarts4r-0.2.0/echarts4r/man/e_globe.Rd | 91 echarts4r-0.2.0/echarts4r/man/e_grid.Rd | 64 echarts4r-0.2.0/echarts4r/man/e_grid_3d.Rd | 80 echarts4r-0.2.0/echarts4r/man/e_heatmap.Rd | 140 echarts4r-0.2.0/echarts4r/man/e_labels.Rd |only echarts4r-0.2.0/echarts4r/man/e_legend.Rd | 64 echarts4r-0.2.0/echarts4r/man/e_line.Rd | 92 echarts4r-0.2.0/echarts4r/man/e_lines.Rd | 102 echarts4r-0.2.0/echarts4r/man/e_liquid.Rd | 74 echarts4r-0.2.0/echarts4r/man/e_map_register.Rd | 62 echarts4r-0.2.0/echarts4r/man/e_modularity.Rd | 112 echarts4r-0.2.0/echarts4r/man/e_parallel.Rd | 76 echarts4r-0.2.0/echarts4r/man/e_pictorial.Rd | 208 echarts4r-0.2.0/echarts4r/man/e_pie.Rd | 80 echarts4r-0.2.0/echarts4r/man/e_polar.Rd | 64 echarts4r-0.2.0/echarts4r/man/e_radar.Rd | 90 echarts4r-0.2.0/echarts4r/man/e_radar_opts.Rd | 36 echarts4r-0.2.0/echarts4r/man/e_restore.Rd |only echarts4r-0.2.0/echarts4r/man/e_river.Rd | 100 echarts4r-0.2.0/echarts4r/man/e_sankey.Rd | 90 echarts4r-0.2.0/echarts4r/man/e_scatter_3d.Rd | 174 echarts4r-0.2.0/echarts4r/man/e_scatter_gl.Rd | 90 echarts4r-0.2.0/echarts4r/man/e_single_axis.Rd |only echarts4r-0.2.0/echarts4r/man/e_step.Rd | 104 echarts4r-0.2.0/echarts4r/man/e_sunburst.Rd | 108 echarts4r-0.2.0/echarts4r/man/e_text_style.Rd |only echarts4r-0.2.0/echarts4r/man/e_title.Rd | 64 echarts4r-0.2.0/echarts4r/man/e_tooltip.Rd | 56 echarts4r-0.2.0/echarts4r/man/e_tree.Rd | 74 echarts4r-0.2.0/echarts4r/man/e_treemap.Rd | 80 echarts4r-0.2.0/echarts4r/man/e_utc.Rd | 28 echarts4r-0.2.0/echarts4r/man/e_visual_map.Rd | 141 echarts4r-0.2.0/echarts4r/man/e_visual_map_range.Rd |only echarts4r-0.2.0/echarts4r/man/e_zoom.Rd |only echarts4r-0.2.0/echarts4r/man/echarts4r-shiny.Rd | 101 echarts4r-0.2.0/echarts4r/man/formatters.Rd | 84 echarts4r-0.2.0/echarts4r/man/graph.Rd | 192 echarts4r-0.2.0/echarts4r/man/graph_action.Rd |only echarts4r-0.2.0/echarts4r/man/graphic.Rd |only echarts4r-0.2.0/echarts4r/man/highlight_action.Rd |only echarts4r-0.2.0/echarts4r/man/highlight_proxy.Rd | 169 echarts4r-0.2.0/echarts4r/man/histogram.Rd | 102 echarts4r-0.2.0/echarts4r/man/init.Rd | 96 echarts4r-0.2.0/echarts4r/man/leaflet.Rd | 94 echarts4r-0.2.0/echarts4r/man/legend_action.Rd |only echarts4r-0.2.0/echarts4r/man/line3D.Rd | 193 echarts4r-0.2.0/echarts4r/man/loading.Rd | 176 echarts4r-0.2.0/echarts4r/man/map.Rd | 163 echarts4r-0.2.0/echarts4r/man/map_actions.Rd |only echarts4r-0.2.0/echarts4r/man/mapbox.Rd |only echarts4r-0.2.0/echarts4r/man/mark.Rd | 119 echarts4r-0.2.0/echarts4r/man/node_adjacency.Rd |only echarts4r-0.2.0/echarts4r/man/pie_action.Rd |only echarts4r-0.2.0/echarts4r/man/radius_axis.Rd |only echarts4r-0.2.0/echarts4r/man/reexports.Rd | 40 echarts4r-0.2.0/echarts4r/man/scatter.Rd | 221 echarts4r-0.2.0/echarts4r/man/smooth.Rd | 112 echarts4r-0.2.0/echarts4r/man/theme.Rd | 104 echarts4r-0.2.0/echarts4r/man/toolbox.Rd | 85 echarts4r-0.2.0/echarts4r/man/tooltip_action.Rd |only echarts4r-0.2.0/echarts4r/man/tooltip_proxy.Rd | 163 138 files changed, 11147 insertions(+), 9934 deletions(-)
Title: Functions for Wind Resource Assessment
Description: A collection of functions to analyse, visualize and interpret wind data
and to calculate the potential energy production of wind turbines.
Author: Christian Graul and Carsten Poppinga
Maintainer: Christian Graul <christian.graul@gmail.com>
Diff between bReeze versions 0.4-2 dated 2018-01-05 and 0.4-3 dated 2018-11-14
bReeze-0.4-2/bReeze/R/profile.R |only bReeze-0.4-2/bReeze/data/datalist |only bReeze-0.4-2/bReeze/data/winddata.RData |only bReeze-0.4-3/bReeze/DESCRIPTION | 10 ++-- bReeze-0.4-3/bReeze/MD5 | 63 ++++++++++++++---------------- bReeze-0.4-3/bReeze/NAMESPACE | 1 bReeze-0.4-3/bReeze/R/aep.R | 2 bReeze-0.4-3/bReeze/R/clean.R | 41 +++++++++++++++++++ bReeze-0.4-3/bReeze/R/day.plot.R | 18 ++++---- bReeze-0.4-3/bReeze/R/map.plot.R | 9 +++- bReeze-0.4-3/bReeze/R/print.profile.R | 2 bReeze-0.4-3/bReeze/R/windprofile.R |only bReeze-0.4-3/bReeze/R/zzz.R | 2 bReeze-0.4-3/bReeze/data/winddata.rda |only bReeze-0.4-3/bReeze/inst/CITATION | 4 - bReeze-0.4-3/bReeze/inst/NEWS | 14 ++++++ bReeze-0.4-3/bReeze/man/aep.Rd | 4 - bReeze-0.4-3/bReeze/man/availability.Rd | 2 bReeze-0.4-3/bReeze/man/bReeze-package.Rd | 2 bReeze-0.4-3/bReeze/man/clean.Rd | 25 ++++++----- bReeze-0.4-3/bReeze/man/day.plot.Rd | 2 bReeze-0.4-3/bReeze/man/energy.Rd | 2 bReeze-0.4-3/bReeze/man/frequency.Rd | 2 bReeze-0.4-3/bReeze/man/map.plot.Rd | 2 bReeze-0.4-3/bReeze/man/mast.Rd | 2 bReeze-0.4-3/bReeze/man/month.stats.Rd | 2 bReeze-0.4-3/bReeze/man/polar.plot.Rd | 2 bReeze-0.4-3/bReeze/man/set.Rd | 2 bReeze-0.4-3/bReeze/man/timestamp.Rd | 2 bReeze-0.4-3/bReeze/man/turb.iec.plot.Rd | 2 bReeze-0.4-3/bReeze/man/turbulence.Rd | 2 bReeze-0.4-3/bReeze/man/uncertainty.Rd | 2 bReeze-0.4-3/bReeze/man/weibull.Rd | 2 bReeze-0.4-3/bReeze/man/winddata.Rd | 3 - bReeze-0.4-3/bReeze/man/windprofile.Rd | 2 35 files changed, 145 insertions(+), 85 deletions(-)
Title: Modeling, Analysis, Validation and Visualization of Observer
Performance Studies in Diagnostic Radiology
Description: Tools for quantitative assessment of medical imaging systems, radiologists or computer aided ('CAD') algorithms.
Implements methods described in a book: 'Chakraborty' 'DP' (2017), "Observer Performance Methods for Diagnostic Imaging -
Foundations, Modeling, and Applications with R-Based Examples", Taylor-Francis <https://www.crcpress.com/9781482214840>
and its Online Appendices <https://github.com/dpc10ster/onlinebookk21778>. Data collection paradigms include receiver
operating characteristic ('ROC') and a location specific extension, namely free-response 'ROC' ('FROC').
'ROC' data consists of a single rating per image, where the rating is the perceived confidence level the image is of a diseased patient.
'FROC' data consists of a variable number (including zero) of mark-rating pairs per image, where a mark is the location of a clinically
reportable suspicious region and the rating is the corresponding confidence level that it is a true lesion. The software supersedes
the current Windows version of 'JAFROC' software <http://www.devchakraborty.com> which is no longer supported.
'RJafroc' is derived from it being an enhanced R version of original Windows 'JAFROC'. Implemented are a number of figures of merit
quantifying performance, functions for visualizing operating characteristics; three ROC ratings data curve-fitting algorithms:
the 'binormal' model ('BM'), the contaminated binormal model ('CBM') and the radiological search model ('RSM'). Also implemented is
maximum likelihood fitting of paired ROC data utilizing the correlated 'CBM' model ('CORCBM'). Unlike the 'BM', 'CBM', 'CORCBM'
and the 'RSM' predict proper ROC curves that do not cross the chance diagonal or display inappropriate hooks, usually near the upper
right corner of the plots. 'RSM' fitting yields measures of search and lesion-classification performances, in addition to the usual
case-classification performance measured by the area under the 'ROC' curve. Search performance is the ability to find lesions while
avoiding finding non-lesions. Lesion-classification performance is the ability to discriminate between found lesions and non-lesions.
For fully crossed study designs, termed multiple-reader multiple-case, significance testing of reader-averaged figure-of-merit
differences between modalities is implemented via both 'Dorfman', 'Berbaum' and 'Metz' ('DBM') and the 'Obuchowski' and 'Rockette'
('OR') methods, both substantially improved by 'Hillis'. Single treatment analysis allows comparison of performance of a group of
radiologists to a specified value, or comparison of 'CAD' performance to a group of radiologists interpreting the same cases. Sample
size estimation tools are provided for 'ROC' studies that allow estimation of relevant variances from a pilot study to predict required
numbers of readers and cases in a pivotal study. 'FROC' sample size estimation is implemented in Online Appendix Chapter 19 available
at <https://github.com/dpc10ster/onlinebookk21778>. Utility and data file manipulation functions allow data to be read in any of the
currently used input formats, including Excel, and the results of the analysis can be viewed in text or Excel output files.
Author: Dev Chakraborty [cre, aut, cph],
Xuetong Zhai [aut],
Lucy D'Agostino McGowan [ctb],
Alejandro RodriguezRuiz [ctb]
Maintainer: Dev Chakraborty <dpc10ster@gmail.com>
Diff between RJafroc versions 1.0.2 dated 2018-05-31 and 1.1.0 dated 2018-11-14
RJafroc-1.0.2/RJafroc/R/ComBins.R |only RJafroc-1.0.2/RJafroc/R/ExampleCompare3ProperRocFits.R |only RJafroc-1.0.2/RJafroc/R/testDf2RJafrocDataset.R |only RJafroc-1.0.2/RJafroc/R/testDfBinDataset.R |only RJafroc-1.0.2/RJafroc/inst/extdata/binnedData123 |only RJafroc-1.0.2/RJafroc/inst/extdata/binnedData124 |only RJafroc-1.0.2/RJafroc/inst/extdata/binnedData125 |only RJafroc-1.0.2/RJafroc/man/ExampleCompare3ProperRocFits.Rd |only RJafroc-1.1.0/RJafroc/DESCRIPTION | 44 RJafroc-1.1.0/RJafroc/MD5 | 197 +- RJafroc-1.1.0/RJafroc/NAMESPACE | 16 RJafroc-1.1.0/RJafroc/NEWS.md | 27 RJafroc-1.1.0/RJafroc/R/ChisqrGoodnessOfFit.R |only RJafroc-1.1.0/RJafroc/R/Compare3ProperRocFits.R |only RJafroc-1.1.0/RJafroc/R/Df2RJafrocDataset.R | 7 RJafroc-1.1.0/RJafroc/R/DfCreateCorCbmDataset.R |only RJafroc-1.1.0/RJafroc/R/DfExtractCorCbmDataset.R |only RJafroc-1.1.0/RJafroc/R/DfExtractDataset.R | 14 RJafroc-1.1.0/RJafroc/R/DfReadCrossedModalities.R | 35 RJafroc-1.1.0/RJafroc/R/DfReadDataFile.R | 18 RJafroc-1.1.0/RJafroc/R/DfReadLrocDataFile.R | 5 RJafroc-1.1.0/RJafroc/R/DfSaveDataFile.R | 55 RJafroc-1.1.0/RJafroc/R/FitBinormalRoc.R | 63 RJafroc-1.1.0/RJafroc/R/FitCbmRoc.R | 107 - RJafroc-1.1.0/RJafroc/R/FitCorCbm.R |only RJafroc-1.1.0/RJafroc/R/FitRsmRoc.R | 231 -- RJafroc-1.1.0/RJafroc/R/PlotEmpiricalOperatingCharacteristics.R | 303 ++- RJafroc-1.1.0/RJafroc/R/SimulateCorCbmDataset.R |only RJafroc-1.1.0/RJafroc/R/SimulateFrocDataset.R | 4 RJafroc-1.1.0/RJafroc/R/SimulateRocDataset.R | 2 RJafroc-1.1.0/RJafroc/R/SsFROCPowerGivenJK.R | 8 RJafroc-1.1.0/RJafroc/R/StSignificanceTesting.R | 22 RJafroc-1.1.0/RJafroc/R/StSignificanceTestingCadVsRadiologists.R | 16 RJafroc-1.1.0/RJafroc/R/StSignificanceTestingCrossedModalities.R | 12 RJafroc-1.1.0/RJafroc/R/StSignificanceTestingSingleFixedFactor.R | 22 RJafroc-1.1.0/RJafroc/R/UtilFigureOfMerit.R | 4 RJafroc-1.1.0/RJafroc/R/UtilMeanSquares.R | 8 RJafroc-1.1.0/RJafroc/R/UtilOutputReport.R | 820 ++++------ RJafroc-1.1.0/RJafroc/R/datasets.R | 229 ++ RJafroc-1.1.0/RJafroc/R/detach-package.R |only RJafroc-1.1.0/RJafroc/R/genericPlotROC.R | 36 RJafroc-1.1.0/RJafroc/R/gpfMyFOM.R | 12 RJafroc-1.1.0/RJafroc/build |only RJafroc-1.1.0/RJafroc/data/binnedData123.RData |only RJafroc-1.1.0/RJafroc/data/binnedData124.RData |only RJafroc-1.1.0/RJafroc/data/binnedData125.RData |only RJafroc-1.1.0/RJafroc/inst/ANALYZED/RSM6/allResultsDOB1 |binary RJafroc-1.1.0/RJafroc/inst/ANALYZED/RSM6/allResultsDOB2 |binary RJafroc-1.1.0/RJafroc/inst/ANALYZED/RSM6/allResultsDOB3 |binary RJafroc-1.1.0/RJafroc/inst/ANALYZED/RSM6/allResultsFED |binary RJafroc-1.1.0/RJafroc/inst/ANALYZED/RSM6/allResultsFR |binary RJafroc-1.1.0/RJafroc/inst/ANALYZED/RSM6/allResultsFZR |binary RJafroc-1.1.0/RJafroc/inst/ANALYZED/RSM6/allResultsJT |binary RJafroc-1.1.0/RJafroc/inst/ANALYZED/RSM6/allResultsMAG |binary RJafroc-1.1.0/RJafroc/inst/ANALYZED/RSM6/allResultsNICO |binary RJafroc-1.1.0/RJafroc/inst/ANALYZED/RSM6/allResultsOPT |binary RJafroc-1.1.0/RJafroc/inst/ANALYZED/RSM6/allResultsPEN |binary RJafroc-1.1.0/RJafroc/inst/ANALYZED/RSM6/allResultsRUS |binary RJafroc-1.1.0/RJafroc/inst/ANALYZED/RSM6/allResultsTONY |binary RJafroc-1.1.0/RJafroc/inst/ANALYZED/RSM6/allResultsVD |binary RJafroc-1.1.0/RJafroc/inst/doc |only RJafroc-1.1.0/RJafroc/man/ChisqrGoodnessOfFit.Rd |only RJafroc-1.1.0/RJafroc/man/Compare3ProperRocFits.Rd |only RJafroc-1.1.0/RJafroc/man/Df2RJafrocDataset.Rd | 7 RJafroc-1.1.0/RJafroc/man/DfCreateCorCbmDataset.Rd |only RJafroc-1.1.0/RJafroc/man/DfExtractCorCbmDataset.Rd |only RJafroc-1.1.0/RJafroc/man/DfExtractDataset.Rd | 12 RJafroc-1.1.0/RJafroc/man/DfReadCrossedModalities.Rd | 20 RJafroc-1.1.0/RJafroc/man/DfReadDataFile.Rd | 2 RJafroc-1.1.0/RJafroc/man/DfReadLrocDataFile.Rd | 4 RJafroc-1.1.0/RJafroc/man/FitBinormalRoc.Rd | 5 RJafroc-1.1.0/RJafroc/man/FitCbmRoc.Rd | 7 RJafroc-1.1.0/RJafroc/man/FitCorCbm.Rd |only RJafroc-1.1.0/RJafroc/man/FitRsmRoc.Rd | 42 RJafroc-1.1.0/RJafroc/man/PlotEmpiricalOperatingCharacteristics.Rd | 20 RJafroc-1.1.0/RJafroc/man/RJafroc-package.Rd | 19 RJafroc-1.1.0/RJafroc/man/SimulateCorCbmDataset.Rd |only RJafroc-1.1.0/RJafroc/man/SimulateFrocDataset.Rd | 4 RJafroc-1.1.0/RJafroc/man/SimulateRocDataset.Rd | 2 RJafroc-1.1.0/RJafroc/man/SsPowerGivenJK.Rd | 3 RJafroc-1.1.0/RJafroc/man/StSignificanceTesting.Rd | 20 RJafroc-1.1.0/RJafroc/man/StSignificanceTestingCadVsRadiologists.Rd | 12 RJafroc-1.1.0/RJafroc/man/StSignificanceTestingCrossedModalities.Rd | 10 RJafroc-1.1.0/RJafroc/man/StSignificanceTestingSingleFixedFactor.Rd | 14 RJafroc-1.1.0/RJafroc/man/UtilFigureOfMerit.Rd | 2 RJafroc-1.1.0/RJafroc/man/UtilMeanSquares.Rd | 6 RJafroc-1.1.0/RJafroc/man/UtilOutputReport.Rd | 91 - RJafroc-1.1.0/RJafroc/man/binnedData123.Rd |only RJafroc-1.1.0/RJafroc/man/binnedData124.Rd |only RJafroc-1.1.0/RJafroc/man/binnedData125.Rd |only RJafroc-1.1.0/RJafroc/man/dataset01.Rd | 8 RJafroc-1.1.0/RJafroc/man/dataset02.Rd | 8 RJafroc-1.1.0/RJafroc/man/dataset03.Rd | 6 RJafroc-1.1.0/RJafroc/man/dataset04.Rd | 6 RJafroc-1.1.0/RJafroc/man/dataset05.Rd | 8 RJafroc-1.1.0/RJafroc/man/dataset06.Rd | 6 RJafroc-1.1.0/RJafroc/man/dataset07.Rd | 6 RJafroc-1.1.0/RJafroc/man/dataset08.Rd | 6 RJafroc-1.1.0/RJafroc/man/dataset09.Rd | 6 RJafroc-1.1.0/RJafroc/man/dataset10.Rd | 6 RJafroc-1.1.0/RJafroc/man/dataset11.Rd | 6 RJafroc-1.1.0/RJafroc/man/dataset12.Rd | 4 RJafroc-1.1.0/RJafroc/man/dataset13.Rd | 6 RJafroc-1.1.0/RJafroc/man/dataset14.Rd | 6 RJafroc-1.1.0/RJafroc/man/datasetCadLroc.Rd | 4 RJafroc-1.1.0/RJafroc/man/datasetCrossedModality.Rd | 14 RJafroc-1.1.0/RJafroc/man/datasetDegenerate.Rd | 4 RJafroc-1.1.0/RJafroc/tests |only RJafroc-1.1.0/RJafroc/vignettes |only 109 files changed, 1414 insertions(+), 1315 deletions(-)
Title: Bayesian Structure Learning in Graphical Models using
Birth-Death MCMC
Description: Provides statistical tools for Bayesian structure learning in undirected graphical models for continuous, discrete, and mixed data. The package is implemented the recent improvements in the Bayesian graphical models literature, including Mohammadi and Wit (2015) <doi:10.1214/14-BA889>, Mohammadi et al. (2017) <doi:10.1111/rssc.12171>, and Dobra and Mohammadi (2018) <doi:10.1214/18-AOAS1164>. To speed up the computations, the BDMCMC sampling algorithms are implemented in parallel using OpenMP in C++.
Author: Reza Mohammadi [aut, cre] <https://orcid.org/0000-0001-9538-0648>,
Ernst Wit [aut],
Adrian Dobra [ctb]
Maintainer: Reza Mohammadi <a.mohammadi@uva.nl>
Diff between BDgraph versions 2.52 dated 2018-10-03 and 2.53 dated 2018-11-14
BDgraph-2.52/BDgraph/R/check.os.R |only BDgraph-2.52/BDgraph/cleanup |only BDgraph-2.52/BDgraph/configure |only BDgraph-2.52/BDgraph/configure.ac |only BDgraph-2.52/BDgraph/src/Makevars.in |only BDgraph-2.52/BDgraph/src/check_nthread.cpp |only BDgraph-2.52/BDgraph/src/check_os.cpp |only BDgraph-2.53/BDgraph/DESCRIPTION | 10 - BDgraph-2.53/BDgraph/MD5 | 158 ++++++++---------- BDgraph-2.53/BDgraph/NAMESPACE | 3 BDgraph-2.53/BDgraph/NEWS | 16 + BDgraph-2.53/BDgraph/R/bdgraph.R | 125 ++++++-------- BDgraph-2.53/BDgraph/R/bdgraph.mpl.R | 87 ++++------ BDgraph-2.53/BDgraph/R/bdgraph.npn.R | 14 - BDgraph-2.53/BDgraph/R/bdgraph.sim.R | 38 ++-- BDgraph-2.53/BDgraph/R/bdgraph.ts.R | 34 +-- BDgraph-2.53/BDgraph/R/compare.R | 12 - BDgraph-2.53/BDgraph/R/gnorm.R | 12 - BDgraph-2.53/BDgraph/R/graph.sim.R | 14 - BDgraph-2.53/BDgraph/R/hill_climb_algorithm.R | 22 +- BDgraph-2.53/BDgraph/R/hill_climb_binary.R | 22 +- BDgraph-2.53/BDgraph/R/pgraph.R | 24 +- BDgraph-2.53/BDgraph/R/plinks.R | 6 BDgraph-2.53/BDgraph/R/plotcoda.R | 10 - BDgraph-2.53/BDgraph/R/plotroc.R | 10 - BDgraph-2.53/BDgraph/R/rgcwish.R | 10 - BDgraph-2.53/BDgraph/R/rgwish.R | 6 BDgraph-2.53/BDgraph/R/rmvnorm.R | 8 BDgraph-2.53/BDgraph/R/rwish.R | 6 BDgraph-2.53/BDgraph/R/select.R | 6 BDgraph-2.53/BDgraph/R/traceplot.R | 10 - BDgraph-2.53/BDgraph/R/transfer.R | 10 - BDgraph-2.53/BDgraph/data/churn.RData |binary BDgraph-2.53/BDgraph/inst/CITATION | 11 - BDgraph-2.53/BDgraph/inst/TODO | 4 BDgraph-2.53/BDgraph/inst/doc/vignette.pdf |binary BDgraph-2.53/BDgraph/man/BDgraph-package.Rd | 13 - BDgraph-2.53/BDgraph/man/bdgraph.Rd | 30 +-- BDgraph-2.53/BDgraph/man/bdgraph.mpl.Rd | 34 +-- BDgraph-2.53/BDgraph/man/bdgraph.npn.Rd | 2 BDgraph-2.53/BDgraph/man/bdgraph.sim.Rd | 4 BDgraph-2.53/BDgraph/man/bdgraph.ts.Rd | 27 +-- BDgraph-2.53/BDgraph/man/churn.Rd | 28 +++ BDgraph-2.53/BDgraph/man/compare.Rd | 10 - BDgraph-2.53/BDgraph/man/gnorm.Rd | 2 BDgraph-2.53/BDgraph/man/graph.sim.Rd | 6 BDgraph-2.53/BDgraph/man/pgraph.Rd | 12 - BDgraph-2.53/BDgraph/man/plinks.Rd | 4 BDgraph-2.53/BDgraph/man/plot.bdgraph.Rd | 8 BDgraph-2.53/BDgraph/man/plot.graph.Rd | 6 BDgraph-2.53/BDgraph/man/plot.sim.Rd | 6 BDgraph-2.53/BDgraph/man/plotcoda.Rd | 6 BDgraph-2.53/BDgraph/man/plotroc.Rd | 10 - BDgraph-2.53/BDgraph/man/print.bdgraph.Rd | 2 BDgraph-2.53/BDgraph/man/print.sim.Rd | 4 BDgraph-2.53/BDgraph/man/rgcwish.Rd | 2 BDgraph-2.53/BDgraph/man/rgwish.Rd | 2 BDgraph-2.53/BDgraph/man/rmvnorm.Rd | 2 BDgraph-2.53/BDgraph/man/rwish.Rd | 3 BDgraph-2.53/BDgraph/man/select.Rd | 6 BDgraph-2.53/BDgraph/man/summary.bdgraph.Rd | 4 BDgraph-2.53/BDgraph/man/traceplot.Rd | 6 BDgraph-2.53/BDgraph/man/trensfer.Rd | 6 BDgraph-2.53/BDgraph/src/BDgraph_init.c | 4 BDgraph-2.53/BDgraph/src/Makevars |only BDgraph-2.53/BDgraph/src/Makevars.win | 5 BDgraph-2.53/BDgraph/src/MyLapack.cpp | 16 - BDgraph-2.53/BDgraph/src/bd_for_ts.cpp | 144 ++++++++-------- BDgraph-2.53/BDgraph/src/copula.cpp | 32 +-- BDgraph-2.53/BDgraph/src/copula.h | 4 BDgraph-2.53/BDgraph/src/gcgm_DMH.cpp | 162 +++++++++--------- BDgraph-2.53/BDgraph/src/gcgm_bd.cpp | 100 +++++------ BDgraph-2.53/BDgraph/src/ggm_DMH.cpp | 136 +++++++-------- BDgraph-2.53/BDgraph/src/ggm_bd.cpp | 76 ++++---- BDgraph-2.53/BDgraph/src/ggm_mpl_bd.cpp | 130 +++++++-------- BDgraph-2.53/BDgraph/src/gm_mpl_Hill_Climb.cpp | 16 - BDgraph-2.53/BDgraph/src/gm_mpl_bd_dis.cpp | 216 ++++++++++++------------- BDgraph-2.53/BDgraph/src/gm_rj.cpp | 122 +++++++------- BDgraph-2.53/BDgraph/src/matrix.cpp | 139 ++++++++-------- BDgraph-2.53/BDgraph/src/matrix.h | 8 BDgraph-2.53/BDgraph/src/omp_set_num_cores.cpp | 22 ++ BDgraph-2.53/BDgraph/src/rgwish.cpp | 46 ++--- BDgraph-2.53/BDgraph/src/rgwish.h | 4 BDgraph-2.53/BDgraph/src/util.h | 21 -- 84 files changed, 1177 insertions(+), 1159 deletions(-)
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Title: LogNormal Response Time Item Response Theory Models
Description: Allows the simultaneous analysis of responses and response times in an Item Response Theory (IRT) modelling framework. Supports covariates for item and person (random) parameters. Parameter estimation is done with a MCMC algorithm. LNIRT replaces the package CIRT, which was written by Rinke Klein Entink. For reference, see the paper by Fox, Klein Entink and Van der Linden (2007), "Modeling of Responses and Response Times with the Package cirt", Journal of Statistical Software, <doi:10.18637/jss.v020.i07>.
Author: Jean-Paul Fox, Konrad Klotzke, Rinke Klein Entink
Maintainer: Konrad Klotzke <omd.bms.utwente.stats@gmail.com>
Diff between LNIRT versions 0.3.0 dated 2018-03-24 and 0.3.5 dated 2018-11-14
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- R/summary.R | 4 ++-- 3 files changed, 8 insertions(+), 8 deletions(-)
Title: Gaussian Process Modeling of Multi-Response Datasets
Description: A general and efficient package for modeling (possibly noisy) datasets via Gaussian processes.
Author: Ramin Bostanabad, Wei Chen (IDEAL)
Maintainer: Ramin Bostanabad <bostanabad@u.northwestern.edu>
Diff between GPM versions 1.0.2 dated 2018-07-23 and 2.0.0 dated 2018-11-14
GPM-1.0.2/GPM/R/CorrMat.R |only GPM-2.0.0/GPM/DESCRIPTION | 20 +-- GPM-2.0.0/GPM/MD5 | 30 ++-- GPM-2.0.0/GPM/NAMESPACE | 6 GPM-2.0.0/GPM/R/Draw.R | 47 +++---- GPM-2.0.0/GPM/R/Fit.R | 244 +++++++++++++++---------------------- GPM-2.0.0/GPM/R/NLogL.R | 43 +++--- GPM-2.0.0/GPM/R/Predict.R | 73 +++++------ GPM-2.0.0/GPM/R/RcppExports.R |only GPM-2.0.0/GPM/man/CorrMat.Rd | 16 +- GPM-2.0.0/GPM/man/Draw.Rd | 6 GPM-2.0.0/GPM/man/Fit.Rd | 33 ++--- GPM-2.0.0/GPM/man/MatrixAlgebra.Rd |only GPM-2.0.0/GPM/man/NLogL.Rd | 10 - GPM-2.0.0/GPM/man/Predict.Rd | 13 - GPM-2.0.0/GPM/src |only 16 files changed, 256 insertions(+), 285 deletions(-)
Title: Serialize R Objects to JSON, JavaScript Object Notation
Description: This is a package that allows conversion to and from
data in Javascript object notation (JSON) format.
This allows R objects to be inserted into Javascript/ECMAScript/ActionScript code
and allows R programmers to read and convert JSON content to R objects.
This is an alternative to rjson package. Originally, that was too slow for converting large R objects to JSON
and was not extensible. rjson's performance is now similar to this package, and perhaps slightly faster in some cases.
This package uses methods and is readily extensible by defining methods for different classes,
vectorized operations, and C code and callbacks to R functions for deserializing JSON objects to R.
The two packages intentionally share the same basic interface. This package (RJSONIO) has many additional
options to allow customizing the generation and processing of JSON content.
This package uses libjson rather than implementing yet another JSON parser. The aim is to support
other general projects by building on their work, providing feedback and benefit from their ongoing development.
Author: Duncan Temple Lang [aut, cre] (<https://orcid.org/0000-0003-0159-1546>),
Jonathan Wallace [aut] (aka ninja9578, author of included libjson
sources)
Maintainer: ORPHANED
Diff between RJSONIO versions 1.3-1 dated 2018-11-12 and 1.3-1.1 dated 2018-11-14
RJSONIO-1.3-1.1/RJSONIO/DESCRIPTION | 13 +- RJSONIO-1.3-1.1/RJSONIO/INSTALL |only RJSONIO-1.3-1.1/RJSONIO/MD5 | 48 +++++------ RJSONIO-1.3-1.1/RJSONIO/configure | 5 - RJSONIO-1.3-1.1/RJSONIO/configure.in | 3 RJSONIO-1.3-1.1/RJSONIO/inst/doc/Changes |only RJSONIO-1.3-1.1/RJSONIO/inst/doc/Changes.html |only RJSONIO-1.3-1.1/RJSONIO/inst/doc/overview.html | 46 +++++----- RJSONIO-1.3-1.1/RJSONIO/src/Makevars.in | 3 RJSONIO-1.3-1.1/RJSONIO/src/libjson/Dependencies |only RJSONIO-1.3-1.1/RJSONIO/src/libjson/Source/JSONGlobals.h | 17 +++ RJSONIO-1.3-1.1/RJSONIO/src/libjson/Source/JSONMemoryPool.h | 2 RJSONIO-1.3-1.1/RJSONIO/src/libjson/Source/JSONValidator.cpp | 4 RJSONIO-1.3-1.1/RJSONIO/src/libjson/Source/JSONWorker.cpp | 8 - RJSONIO-1.3-1.1/RJSONIO/src/libjson/Source/JSON_Base64.h | 2 RJSONIO-1.3-1.1/RJSONIO/tools |only RJSONIO-1.3-1/RJSONIO/CRAN_changes |only RJSONIO-1.3-1/RJSONIO/Changes |only RJSONIO-1.3-1/RJSONIO/Changes.html |only RJSONIO-1.3-1/RJSONIO/Dependencies |only RJSONIO-1.3-1/RJSONIO/README |only RJSONIO-1.3-1/RJSONIO/README.libjson |only RJSONIO-1.3-1/RJSONIO/Todo.xml |only RJSONIO-1.3-1/RJSONIO/cleanup.in |only RJSONIO-1.3-1/RJSONIO/cp_libjson |only RJSONIO-1.3-1/RJSONIO/libjsonFixes |only RJSONIO-1.3-1/RJSONIO/libjsonNotes |only RJSONIO-1.3-1/RJSONIO/src/libjson/copy |only RJSONIO-1.3-1/RJSONIO/src/libjson/makefile |only 29 files changed, 83 insertions(+), 68 deletions(-)
Title: Estimation and Validation Methods for Subgroup Identification
and Personalized Medicine
Description: Provides functions for fitting and validation of models for subgroup
identification and personalized medicine / precision medicine under the general subgroup
identification framework of Chen et al. (2017) <doi:10.1111/biom.12676>.
This package is intended for use for both randomized controlled trials and
observational studies.
Author: Jared Huling [aut, cre] (<https://orcid.org/0000-0003-0670-4845>),
Aaron Potvien [ctb],
Alexandros Karatzoglou [cph],
Alex Smola [cph]
Maintainer: Jared Huling <jaredhuling@gmail.com>
Diff between personalized versions 0.2.1 dated 2018-09-19 and 0.2.2 dated 2018-11-14
DESCRIPTION | 14 ++--- MD5 | 11 ++-- R/est_subgroup_effects.R | 3 - R/summarize_subgroups.R | 12 ++-- inst/CITATION |only inst/doc/usage_of_the_personalized_package.html | 66 +++++++++--------------- man/print.Rd | 7 +- 7 files changed, 54 insertions(+), 59 deletions(-)
Title: Methods for Statistical Disclosure Control in Tabular Data
Description: Methods for statistical disclosure control in
tabular data such as primary and secondary cell suppression as described for example
in Hundepol et al. (2012) <doi:10.1002/9781118348239> are covered in this package.
Author: Bernhard Meindl
Maintainer: Bernhard Meindl <bernhard.meindl@gmail.com>
Diff between sdcTable versions 0.24 dated 2018-07-24 and 0.25 dated 2018-11-14
sdcTable-0.24/sdcTable/README.md |only sdcTable-0.24/sdcTable/vignettes/overview.pdf |only sdcTable-0.25/sdcTable/DESCRIPTION | 16 sdcTable-0.25/sdcTable/MD5 | 24 sdcTable-0.25/sdcTable/R/methods_class_dimVar.r | 13 sdcTable-0.25/sdcTable/inst/doc/sdcTable.html | 2679 -------------- sdcTable-0.25/sdcTable/man/calc.problemInstance-method.Rd | 4 sdcTable-0.25/sdcTable/man/calc.simpleTriplet-method.Rd | 3 sdcTable-0.25/sdcTable/man/changeCellStatus.Rd | 3 sdcTable-0.25/sdcTable/man/createArgusInput.Rd | 8 sdcTable-0.25/sdcTable/man/get.simpleTriplet-method.Rd | 3 sdcTable-0.25/sdcTable/man/runArgusBatchFile.Rd | 5 sdcTable-0.25/sdcTable/man/sdcProb2df.Rd | 3 sdcTable-0.25/sdcTable/man/set.problemInstance-method.Rd | 4 14 files changed, 156 insertions(+), 2609 deletions(-)
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More information about AutoStepwiseGLM at CRAN
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More information about SolveRationalMatrixEquation at CRAN
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Title: ArcGIS Geoprocessing via Python
Description: Provides access to ArcGIS geoprocessing tools by building an
interface between R and the ArcPy Python side-package via the
reticulate package.
Author: Alexander Brenning [aut, cre],
Fabian Polakowski [aut],
Marc Becker [aut],
Jannes Muenchow [ctb] (<https://orcid.org/0000-0001-7834-4717>)
Maintainer: Alexander Brenning <alexander.brenning@uni-jena.de>
Diff between RPyGeo versions 0.9-3 dated 2012-08-23 and 1.0.0 dated 2018-11-14
RPyGeo-0.9-3/RPyGeo/configure |only RPyGeo-0.9-3/RPyGeo/configure.win |only RPyGeo-0.9-3/RPyGeo/man/rpygeo.ASCIIToRaster.conversion.Rd |only RPyGeo-0.9-3/RPyGeo/man/rpygeo.AreaSolarRadiation.sa.Rd |only RPyGeo-0.9-3/RPyGeo/man/rpygeo.EucDistance.sa.Rd |only RPyGeo-0.9-3/RPyGeo/man/rpygeo.FlowAccumulation.sa.Rd |only RPyGeo-0.9-3/RPyGeo/man/rpygeo.SingleOutputMapAlgebra.sa.Rd |only RPyGeo-0.9-3/RPyGeo/man/rpygeo.build.env.Rd |only RPyGeo-0.9-3/RPyGeo/man/rpygeo.geoprocessor.Rd |only RPyGeo-0.9-3/RPyGeo/man/rpygeo.required.extensions.Rd |only RPyGeo-0.9-3/RPyGeo/man/write.point.shapefile.Rd |only RPyGeo-1.0.0/RPyGeo/DESCRIPTION | 46 RPyGeo-1.0.0/RPyGeo/MD5 | 52 - RPyGeo-1.0.0/RPyGeo/NAMESPACE |only RPyGeo-1.0.0/RPyGeo/NEWS |only RPyGeo-1.0.0/RPyGeo/NEWS.md |only RPyGeo-1.0.0/RPyGeo/R/helper_functions.R |only RPyGeo-1.0.0/RPyGeo/R/operators.R |only RPyGeo-1.0.0/RPyGeo/R/rpygeo.R | 558 ------------ RPyGeo-1.0.0/RPyGeo/R/rpygeo_reticulate.R |only RPyGeo-1.0.0/RPyGeo/build |only RPyGeo-1.0.0/RPyGeo/inst |only RPyGeo-1.0.0/RPyGeo/man/RPyGeo-package.Rd | 85 + RPyGeo-1.0.0/RPyGeo/man/grapes-rpygeo_-grapes.Rd |only RPyGeo-1.0.0/RPyGeo/man/grapes-rpygeo_-plus-grapes.Rd |only RPyGeo-1.0.0/RPyGeo/man/grapes-rpygeo_-slash-grapes.Rd |only RPyGeo-1.0.0/RPyGeo/man/grapes-rpygeo_-times-grapes.Rd |only RPyGeo-1.0.0/RPyGeo/man/input_check.Rd |only RPyGeo-1.0.0/RPyGeo/man/rpygeo_build_env.Rd |only RPyGeo-1.0.0/RPyGeo/man/rpygeo_help.Rd |only RPyGeo-1.0.0/RPyGeo/man/rpygeo_load.Rd |only RPyGeo-1.0.0/RPyGeo/man/rpygeo_save.Rd |only RPyGeo-1.0.0/RPyGeo/man/rpygeo_search.Rd |only RPyGeo-1.0.0/RPyGeo/man/set_scratch_workspace.Rd |only RPyGeo-1.0.0/RPyGeo/man/set_workspace.Rd |only RPyGeo-1.0.0/RPyGeo/tests |only RPyGeo-1.0.0/RPyGeo/vignettes |only 37 files changed, 148 insertions(+), 593 deletions(-)
Title: MNREAD Parameters Estimation and Curve Plotting
Description: Allows to analyze the reading data obtained with the MNREAD Acuity
Chart, a continuous-text reading acuity chart for normal and low vision.
Provides the necessary functions to plot the MNREAD curve and estimate
automatically the four MNREAD parameters: Maximum Reading Speed,
Critical Print Size, Reading Acuity and Reading Accessibility Index.
Parameters can be estimated either with the standard method
or with a nonlinear mixed-effects (NLME) modeling.
See Calabrese et al. 2018 for more details <doi.org/10.1167/18.1.8>.
Author: Aurélie Calabrèse [aut, cre],
J. Steve Mansfield [aut],
Gordon E. Legge [aut]
Maintainer: Aurélie Calabrèse <acalabre@umn.edu>
Diff between mnreadR versions 2.1.0 dated 2018-07-06 and 2.1.1 dated 2018-11-14
DESCRIPTION | 8 +++++--- MD5 | 12 ++++++------ R/acc_index.R | 7 ++++++- R/all_mnread_param.R | 11 ++++++++--- R/nlme_curve.R | 28 +++++++++++++++++++++++++++- inst/CITATION | 4 ++-- man/nlmeCurve.Rd | 28 +++++++++++++++++++++++++++- 7 files changed, 81 insertions(+), 17 deletions(-)
Title: Generalized Linear Latent Variable Models
Description: Analysis of multivariate data using generalized linear latent variable models (gllvm).
Estimation is performed using either Laplace approximation method or variational approximation method implemented via TMB (Kristensen et al., (2016), <doi:10.18637/jss.v070.i05>).
Details for gllvm, see Hui et al. (2015) <doi:10.1111/2041-210X.12236>
and (2017) <doi:10.1080/10618600.2016.1164708> and Niku et al. (2017)
<doi:10.1007/s13253-017-0304-7>.
Author: Jenni Niku, Wesley Brooks, Riki Herliansyah, Francis K.C. Hui, Sara Taskinen, David I. Warton
Maintainer: Jenni Niku <jenni.m.e.niku@jyu.fi>
Diff between gllvm versions 1.0 dated 2018-07-30 and 1.1.0 dated 2018-11-14
DESCRIPTION | 10 MD5 | 56 ++-- NAMESPACE | 9 R/TMBtrait.R | 53 +++- R/anova.gllvm.R | 83 ++++--- R/coef.gllvm.R | 8 R/coefplot.gllvm.R | 107 +++++---- R/confint.gllvm.R | 54 ++-- R/getResidualCor.gllvm.R | 24 +- R/gllvm.R | 515 ++++++++++++++++++++++++++++++-------------- R/gllvm.TMB.R | 498 +++++++++++++++++++++++++----------------- R/gllvm.VA.R | 8 R/gllvm.auxiliary.R | 73 ++++++ R/logLik.gllvm.R | 19 + R/ordiplot.gllvm.R | 134 +++++++---- R/plot.gllvm.R | 97 ++++++-- R/print.gllvm.R | 16 - R/residuals.gllvm.R | 78 ++++-- R/summary.gllvm.R | 19 - man/anova.gllvm.Rd | 18 - man/coefplot.gllvm.Rd | 8 man/confint.gllvm.Rd | 6 man/getResidualCor.gllvm.Rd | 12 - man/gllvm.Rd | 48 ++-- man/logLik.gllvm.Rd | 2 man/ordiplot.gllvm.Rd | 8 man/plot.gllvm.Rd | 26 +- man/residuals.gllvm.Rd | 8 man/summary.gllvm.Rd | 2 29 files changed, 1299 insertions(+), 700 deletions(-)
More information about gamlss.countKinf at CRAN
Permanent link
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-06-15 0.1.0
Title: Explore and Visualize Your Data Interactively
Description: A 'shiny' gadget to create 'ggplot2' charts interactively with drag-and-drop to map your variables.
You can quickly visualize your data accordingly to their type, export to 'PNG' or 'PowerPoint',
and retrieve the code to reproduce the chart.
Author: Fanny Meyer [aut],
Victor Perrier [aut, cre],
Ian Carroll [ctb] (Facets support)
Maintainer: Victor Perrier <victor.perrier@dreamrs.fr>
Diff between esquisse versions 0.1.6 dated 2018-10-26 and 0.1.7 dated 2018-11-14
DESCRIPTION | 8 ++-- MD5 | 24 ++++++------ NAMESPACE | 11 +++++ NEWS.md | 7 +++ R/esquisserServer.R | 6 +-- R/esquisserUI.R | 24 +++++++++++- R/ggplot_helpers.R | 35 +++++++++++++----- R/ggplot_to_ppt.R | 15 ++++--- R/input-dragula.R | 20 ++++++++-- R/module-chartControls.R | 67 +++++++++++++++++++++-------------- R/module-code.R | 12 ++++++ R/module-filterData.R | 1 inst/www/dragula/dragula-bindings.js | 2 - 13 files changed, 163 insertions(+), 69 deletions(-)
Title: Some Functions to be Used as Shortcuts in 'RStudio'
Description: 'RStudio' as of recently offers the option to define addins and assign shortcuts to them. This package contains addins for a few most frequently used functions in a data scientist's (at least mine) daily work (like str(), example(), plot(), head(), view(), Desc()). Most of these functions will use the current selection in the editor window and send the specific command to the console while instantly executing it. Assigning shortcuts to these addins will save you quite a few keystrokes.
Author: Andri Signorell
Maintainer: Andri Signorell <andri@signorell.net>
Diff between DescToolsAddIns versions 1.0 dated 2018-03-10 and 1.1 dated 2018-11-14
DESCRIPTION | 8 +-- MD5 | 12 ++--- NAMESPACE | 6 +- NEWS | 11 +++++ R/AddIns.R | 102 ++++++++++++++++++++++++++++++++++++++++++++---- inst/rstudio/addins.dcf | 26 ++++++++++-- man/DescToolsAddIns.Rd | 20 +++++++-- 7 files changed, 156 insertions(+), 29 deletions(-)
More information about DescToolsAddIns at CRAN
Permanent link
Title: Plots a QQ-Norm Plot with Several Gaussian Simulations
Description: Plots a QQ-Norm Plot with several Gaussian simulations.
Author: Matthias Salvisberg
Maintainer: Matthias Salvisberg <matthias.salvisberg@gmail.com>
Diff between StMoSim versions 3.0 dated 2014-10-16 and 3.1 dated 2018-11-14
StMoSim-3.0/StMoSim/man/StMoSim-package.Rd |only StMoSim-3.1/StMoSim/DESCRIPTION | 13 +-- StMoSim-3.1/StMoSim/MD5 | 17 ++-- StMoSim-3.1/StMoSim/NAMESPACE | 24 +++-- StMoSim-3.1/StMoSim/R/RcppExports.R | 14 +-- StMoSim-3.1/StMoSim/R/StMoSim.R |only StMoSim-3.1/StMoSim/R/qqnormSim.R | 123 +++++++++++++++++++---------- StMoSim-3.1/StMoSim/man/StMoSim.Rd |only StMoSim-3.1/StMoSim/man/qqnormSim.Rd | 81 ++++++++++--------- StMoSim-3.1/StMoSim/src/Makevars |only StMoSim-3.1/StMoSim/src/Makevars.win |only StMoSim-3.1/StMoSim/src/RcppExports.cpp | 36 ++++---- 12 files changed, 187 insertions(+), 121 deletions(-)
Title: R Bayesian Evidence Synthesis Tools
Description: Tool-set to support Bayesian evidence synthesis.
This includes meta-analysis, (robust) prior derivation
from historical data, operating characteristics
and analysis (1 and 2 sample cases).
Author: Novartis Pharma AG [cph],
Sebastian Weber [aut, cre],
Beat Neuenschwander [ctb],
Heinz Schmidli [ctb],
Baldur Magnusson [ctb],
Yue Li [ctb],
Satrajit Roychoudhury [ctb],
Trustees of Columbia University [cph] (src/init.cpp, tools/make_cc.R,
R/stanmodels.R, src/Makevars, src/Makevars.win)
Maintainer: Sebastian Weber <sebastian.weber@novartis.com>
Diff between RBesT versions 1.3-4 dated 2018-10-17 and 1.3-5 dated 2018-11-14
DESCRIPTION | 14 ++--- MD5 | 48 +++++++++++-------- build/vignette.rds |binary inst/NEWS | 8 +++ inst/doc/PoS_codata.R |only inst/doc/PoS_codata.Rmd |only inst/doc/PoS_codata.html |only inst/doc/PoS_interim.R |only inst/doc/PoS_interim.Rmd |only inst/doc/PoS_interim.html |only inst/doc/RBesT.pdf |binary inst/doc/customizing_plots.html | 62 ++++++++++++------------- inst/doc/introduction.R | 6 ++ inst/doc/introduction.Rmd | 6 ++ inst/doc/introduction.html | 87 ++++++++++++++++++----------------- inst/doc/introduction_normal.R | 6 ++ inst/doc/introduction_normal.Rmd | 6 ++ inst/doc/introduction_normal.html | 93 +++++++++++++++++++------------------- inst/doc/robustMAP.R | 6 ++ inst/doc/robustMAP.Rmd | 6 ++ inst/doc/robustMAP.html | 51 ++++++++++---------- inst/doc/variances_MAP.html | 69 +++++++++++++--------------- src/Makevars | 6 -- src/Makevars.win | 6 -- vignettes/PoS_codata.Rmd |only vignettes/PoS_interim.Rmd |only vignettes/introduction.Rmd | 6 ++ vignettes/introduction_normal.Rmd | 6 ++ vignettes/robustMAP.Rmd | 6 ++ 29 files changed, 275 insertions(+), 223 deletions(-)
Title: A Dependency Management System for Projects and their R Package
Dependencies
Description: Manage the R packages your project depends
on in an isolated, portable, and reproducible way.
Author: Kevin Ushey, Jonathan McPherson, Joe Cheng, Aron Atkins, JJ Allaire
Maintainer: Kevin Ushey <kevin@rstudio.com>
Diff between packrat versions 0.4.9-3 dated 2018-06-01 and 0.5.0 dated 2018-11-14
packrat-0.4.9-3/packrat/R/migrate-library.R |only packrat-0.4.9-3/packrat/R/migrate-packrat.R |only packrat-0.4.9-3/packrat/man/migrate.Rd |only packrat-0.4.9-3/packrat/tests/testthat/repo/src/contrib/packrat/packrat_0.4.9.tar.gz |only packrat-0.5.0/packrat/DESCRIPTION | 10 packrat-0.5.0/packrat/MD5 | 104 ++++----- packrat-0.5.0/packrat/NAMESPACE | 1 packrat-0.5.0/packrat/R/available-updates.R | 70 ++++++ packrat-0.5.0/packrat/R/bitbucket.R |only packrat-0.5.0/packrat/R/cache.R | 24 ++ packrat-0.5.0/packrat/R/dependencies.R | 26 +- packrat-0.5.0/packrat/R/disable.R | 1 packrat-0.5.0/packrat/R/downloader.R | 7 packrat-0.5.0/packrat/R/external.R | 42 +++ packrat-0.5.0/packrat/R/install.R | 2 packrat-0.5.0/packrat/R/library-support.R | 4 packrat-0.5.0/packrat/R/lockfile.R | 2 packrat-0.5.0/packrat/R/options.R | 11 - packrat-0.5.0/packrat/R/packrat-mode.R | 10 packrat-0.5.0/packrat/R/packrat.R | 24 +- packrat-0.5.0/packrat/R/pkg.R | 16 + packrat-0.5.0/packrat/R/recursive-package-dependencies.R | 42 +++ packrat-0.5.0/packrat/R/restore-routines.R | 39 +++ packrat-0.5.0/packrat/R/restore.R | 109 +++++++++- packrat-0.5.0/packrat/R/snapshot.R | 38 ++- packrat-0.5.0/packrat/R/status.R | 2 packrat-0.5.0/packrat/R/utils.R | 21 + packrat-0.5.0/packrat/README.md | 4 packrat-0.5.0/packrat/inst/resources/init-rprofile.R | 2 packrat-0.5.0/packrat/inst/resources/init.R | 2 packrat-0.5.0/packrat/inst/resources/mac_r_userlib.sh | 4 packrat-0.5.0/packrat/man/bitbucket_pwd.Rd |only packrat-0.5.0/packrat/man/bitbucket_user.Rd |only packrat-0.5.0/packrat/man/bundle.Rd | 4 packrat-0.5.0/packrat/man/lockfile-metadata.Rd | 4 packrat-0.5.0/packrat/man/packrat-external.Rd | 20 + packrat-0.5.0/packrat/man/packrat-mode.Rd | 2 packrat-0.5.0/packrat/man/packrat-options.Rd | 6 packrat-0.5.0/packrat/man/repository-management.Rd | 5 packrat-0.5.0/packrat/man/restore.Rd | 4 packrat-0.5.0/packrat/tests/testthat/lockfiles/lockfile-multipleRepos.txt | 10 packrat-0.5.0/packrat/tests/testthat/packages/packrat/DESCRIPTION | 5 packrat-0.5.0/packrat/tests/testthat/repo/src/contrib/PACKAGES | 15 - packrat-0.5.0/packrat/tests/testthat/repo/src/contrib/PACKAGES.gz |binary packrat-0.5.0/packrat/tests/testthat/repo/src/contrib/PACKAGES.rds |binary packrat-0.5.0/packrat/tests/testthat/repo/src/contrib/bread/bread_1.0.0.tar.gz |binary packrat-0.5.0/packrat/tests/testthat/repo/src/contrib/breakfast/breakfast_1.0.0.tar.gz |binary packrat-0.5.0/packrat/tests/testthat/repo/src/contrib/egg/egg_1.0.0.tar.gz |binary packrat-0.5.0/packrat/tests/testthat/repo/src/contrib/oatmeal/oatmeal_1.0.0.tar.gz |binary packrat-0.5.0/packrat/tests/testthat/repo/src/contrib/packrat/packrat_0.4.9-15.tar.gz |only packrat-0.5.0/packrat/tests/testthat/repo/src/contrib/toast/toast_1.0.0.tar.gz |binary packrat-0.5.0/packrat/tests/testthat/resources/interactive-doc-example.Rmd | 2 packrat-0.5.0/packrat/tests/testthat/resources/knitr-minimal.Rnw | 2 packrat-0.5.0/packrat/tests/testthat/test-bitbucket.R |only packrat-0.5.0/packrat/tests/testthat/test-cache.R | 18 + packrat-0.5.0/packrat/tests/testthat/test-lockfile.R | 10 packrat-0.5.0/packrat/tests/testthat/test-shiny.R | 2 packrat-0.5.0/packrat/tests/testthat/test-with_extlib.R |only 58 files changed, 551 insertions(+), 175 deletions(-)
Title: Latent Variable Gaussian Process Modeling with Qualitative and
Quantitative Input Variables
Description: Fit response surfaces for datasets with latent-variable Gaussian process modeling, predict responses for new inputs, and plot latent variables locations in the latent space (only 1D or 2D).
The input variables of the datasets can be quantitative, qualitative/categorical or mixed.
The output variable of the datasets is a scalar (quantitative).
The optimization of the likelihood function is done using a successive approximation/relaxation algorithm similar to another GP modeling package "GPM".
The modeling method is published in "A Latent Variable Approach to Gaussian Process Modeling with Qualitative and Quantitative Factors"
by Yichi Zhang, Siyu Tao, Wei Chen, and Daniel W. Apley (2018) <arXiv:1806.07504>. The package is developed in IDEAL of Northwestern University.
Author: Siyu Tao, Yichi Zhang
Maintainer: Siyu Tao <siyutao2020@u.northwestern.edu>
Diff between LVGP versions 2.1.3 dated 2018-07-31 and 2.1.4 dated 2018-11-14
DESCRIPTION | 19 ++++++++++--------- MD5 | 14 +++++++------- R/LVGP_fit.R | 34 ++++++++++++++++++---------------- R/LVGP_predict.R | 14 +++++++------- R/neg_log_l.R | 21 +++++++++++---------- R/to_latent.R | 2 +- data/math_example.rda |binary man/to_latent.Rd | 2 +- 8 files changed, 55 insertions(+), 51 deletions(-)
Title: A Menu-Driven GUI for Data Analysis of Just Finance and
Econometrics
Description: Support the decision analysis of international assets selection and portfolio backtesting.
Author: Ho Tsung-wu
Maintainer: Ho Tsung-wu <tsungwu@ntnu.edu.tw>
Diff between JFE versions 1.2 dated 2018-03-02 and 1.3 dated 2018-11-14
JFE-1.2/JFE/R/02price.R |only JFE-1.2/JFE/R/03returns.R |only JFE-1.2/JFE/R/05Portfolio-covFunctions.R |only JFE-1.2/JFE/data |only JFE-1.2/JFE/man/Portfolio-covFunctions.Rd |only JFE-1.2/JFE/man/data-sets.Rd |only JFE-1.3/JFE/DESCRIPTION | 22 ++--- JFE-1.3/JFE/MD5 | 22 ++--- JFE-1.3/JFE/NAMESPACE | 3 JFE-1.3/JFE/R/02returns.R |only JFE-1.3/JFE/R/03price.R |only JFE-1.3/JFE/R/04assetsSelection.R | 42 +++++------ JFE-1.3/JFE/R/05Portfolio.R | 111 ++++++++++++++++++++++++++++-- JFE-1.3/JFE/R/JFE.R | 22 ++--- JFE-1.3/JFE/man/JFE.Rd | 13 +-- 15 files changed, 160 insertions(+), 75 deletions(-)
Title: Enhanced Command History Tracking for R Sessions and Dynamic
Documents
Description: Automatically tracks and makes programmatically available code
evaluation history in R sessions and dynamic documents.
Author: Gabriel Becker [aut, cre]
Maintainer: Gabriel Becker <gabembecker@gmail.com>
Diff between histry versions 0.2.2 dated 2018-06-25 and 0.2.4 dated 2018-11-14
DESCRIPTION | 12 ++++++------ MD5 | 10 +++++----- build/vignette.rds |binary inst/doc/vignette.html | 4 ++-- inst/doc/vignette2.pdf |binary inst/examples/basicprov.R | 2 +- 6 files changed, 14 insertions(+), 14 deletions(-)
Title: Generalised Joint Regression Modelling
Description: Routines for fitting various joint (and univariate) regression models, with several types of covariate effects, in the presence of equations' errors association, endogeneity, non-random sample selection or partial observability.
Author: Giampiero Marra <giampiero.marra@ucl.ac.uk> and Rosalba Radice <rosalba.radice@city.ac.uk>
Maintainer: Giampiero Marra <giampiero.marra@ucl.ac.uk>
Diff between GJRM versions 0.1-4 dated 2017-12-13 and 0.1-5 dated 2018-11-14
ChangeLog | 9 - DESCRIPTION | 17 + MD5 | 143 +++++++++------- NAMESPACE | 28 +-- R/CopulaCLM.r |only R/PDef.R |only R/PosDefCor.R | 2 R/S.m.r | 45 +++-- R/SemiParBIV.fit.R | 17 + R/SemiParBIV.r | 59 +++++- R/SemiParTRIV.r | 24 +- R/approx.CLM.r |only R/bCopulaCLMgHsCont.R |only R/bcontSurvGuniv.R | 2 R/bcontSurvGunivInform.r |only R/bcorrec.R | 42 ++-- R/bcorrec2.R | 92 +--------- R/bcorrecDiscr.R | 6 R/bcorrecFuncs.R | 74 ++++++++ R/bprobgHsContUniv.r | 36 ++-- R/bprobgHsContUniv3.r | 17 + R/conv.check.r | 4 R/copgHs.r | 8 R/copulaSampleSel.r | 40 +++- R/cv.inform.r |only R/distrHsATDiscr.r | 18 +- R/distrHsATDiscr2.r |only R/distrHsDiscr.r | 6 R/edf.loop.r | 28 ++- R/func.OPT.r | 6 R/gamlss.r | 387 +++++++++++++++++++++++++++++++++++++++----- R/ggm.Deriv.R |only R/ggmtrust.R |only R/ggmtrust.path.R |only R/gjrm.r | 104 ++++++++--- R/imputeCounter.r |only R/imputeSS.r | 231 ++++++++++++++++++++++---- R/inform.setup.r |only R/int.postcheck.R | 2 R/jc.probs.r | 19 +- R/jc.probs2.r | 48 +++++ R/logLik.ggmtrust.r |only R/mice.impute.copulaSS.R |only R/overall.svG.R | 260 ++++++++++++++--------------- R/pen.r | 11 - R/penAprL.R |only R/plot.SemiParBIV.r | 30 ++- R/post.check.R | 5 R/postVb.r | 62 ++++++- R/pream.wm.r | 87 +++++++++ R/pred.mvt.r | 345 ++++++++++++++++++++++++++++++++++++++- R/pred.var.r | 5 R/predict.SemiParBIV.r | 5 R/probm.R | 45 ++++- R/pscr0.r | 5 R/rIC.R |only R/resp.CLM.r |only R/rob.const.R |only R/rob.int.R |only R/sim.resp.R | 4 R/summary.SemiParBIV.r | 8 R/summary.SemiParTRIV.r | 2 R/summary.copulaSampleSel.r | 2 R/summary.gamlss.r | 4 R/summary.gjrm.r | 2 R/susu.r | 50 +++-- R/susutsn.r | 37 +++- R/vis.gam2.r | 184 +++++++++++++++++++- R/vis.gjrm.r | 64 ++++++- man/CopulaCLM.Rd |only man/GJRM-package.Rd | 16 + man/bcont.Rd | 1 man/bprobgHsCont.Rd | 1 man/bprobgHsContUniv.Rd | 1 man/cv.inform.Rd |only man/distrHs.Rd | 1 man/eta.tr.Rd | 10 + man/gamlss.Rd | 33 +++ man/ggmtrust.Rd |only man/gjrm.Rd | 68 ++++++- man/imputeCounter.Rd |only man/imputeSS.Rd | 3 man/logLik.SemiParBIV.Rd | 1 man/rob.const.Rd |only man/rob.int.Rd |only 85 files changed, 2259 insertions(+), 607 deletions(-)
Title: Fitting Point Process Models via the Palm Likelihood
Description: Functions to fit point process models using the Palm likelihood. First proposed by Tanaka, Ogata, and Stoyan (2008) <DOI:10.1002/bimj.200610339>, maximisation of the Palm likelihood can provide computationally efficient parameter estimation for point process models in situations where the full likelihood is intractable. This package is chiefly focused on Neyman-Scott point processes, but can also fit void processes. The development of this package was motivated by the analysis of capture-recapture surveys on which individuals cannot be identified---the data from which can conceptually be seen as a clustered point process. As such, some of the functions in this package are specifically for the estimation of cetacean density from two-camera aerial surveys.
Author: Ben Stevenson <ben.stevenson@auckland.ac.nz>
Maintainer: Ben Stevenson <ben.stevenson@auckland.ac.nz>
Diff between palm versions 1.1.1 dated 2018-05-03 and 1.1.2 dated 2018-11-14
palm-1.1.1/palm/data/examples.rda |only palm-1.1.2/palm/DESCRIPTION | 11 - palm-1.1.2/palm/MD5 | 38 ++-- palm-1.1.2/palm/NAMESPACE | 1 palm-1.1.2/palm/NEWS | 8 palm-1.1.2/palm/R/fit-ns.r | 75 +++++--- palm-1.1.2/palm/R/palm.r | 25 +- palm-1.1.2/palm/R/refclass.r | 245 ++++++++++++++++++++--------- palm-1.1.2/palm/README.md | 14 + palm-1.1.2/palm/data/examples.r |only palm-1.1.2/palm/man/coef.palm.Rd | 4 palm-1.1.2/palm/man/fit.ns.Rd | 42 ++-- palm-1.1.2/palm/man/fit.twocamera.Rd | 9 - palm-1.1.2/palm/man/fit.void.Rd | 40 ++-- palm-1.1.2/palm/man/palm.Rd | 17 +- palm-1.1.2/palm/man/plot.palm.Rd | 4 palm-1.1.2/palm/man/porpoise.data.Rd | 6 palm-1.1.2/palm/man/sim.ns.Rd | 18 +- palm-1.1.2/palm/man/sim.void.Rd | 6 palm-1.1.2/palm/src/pbc_distances.cpp | 5 palm-1.1.2/palm/tests/testthat/test-fits.r | 28 +++ 21 files changed, 393 insertions(+), 203 deletions(-)
Title: Anything to 'POSIXct' or 'Date' Converter
Description: Convert input in any one of character, integer, numeric, factor,
or ordered type into 'POSIXct' (or 'Date') objects, using one of a number of
predefined formats, and relying on Boost facilities for date and time parsing.
Author: Dirk Eddelbuettel
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between anytime versions 0.3.2 dated 2018-11-06 and 0.3.3 dated 2018-11-14
ChangeLog | 23 +++++++++++++++++++++++ DESCRIPTION | 11 ++++++----- MD5 | 23 ++++++++++++++--------- R/anytime.R | 8 ++++---- README.md | 18 ++++++++++++------ build/partial.rdb |binary build/vignette.rds |only inst/NEWS.Rd | 11 +++++++++++ inst/doc/anytime-introduction.R |only inst/doc/anytime-introduction.Rmd |only inst/doc/anytime-introduction.pdf |binary man/anytime-package.Rd | 12 ++++++------ src/anytime.cpp | 6 +++--- vignettes |only 14 files changed, 79 insertions(+), 33 deletions(-)
Title: Markov Regime Switching Copula Models Estimation and Goodness of
Fit
Description: R functions to estimate and perform goodness of fit test for several
Markov regime switching and mixture bivariate copula models.
The goodness of fit test is based on a Cramer von Mises statistic and
uses the Rosenblatt transform and parametric bootstrap to estimate the p-value.
The estimation of the copula parameters are based on the pseudo-maximum likelihood
method using pseudo-observations defined as normalized ranks.
Author: Mamadou Yamar Thioub <mamadou-yamar.thioub@hec.ca>,
Bouchra Nasri <bouchra.nasri@mail.mcgill.ca>,
Romanic Pieugueu <romanic.pieugueu@gerad.ca>, and
Bruno Remillard <bruno.remillard@hec.ca>
Maintainer: Mamadou Yamar Thioub <mamadou-yamar.thioub@hec.ca>
Diff between HMMcopula versions 1.0.1 dated 2018-10-28 and 1.0.2 dated 2018-11-14
DESCRIPTION | 8 +++---- MD5 | 14 ++++++------ R/EstHMMCop.R | 61 ++++++++++++++++++++++++++++++++++++++++-------------- R/EstMixtureCop.R | 32 +++++++++++++++++++++++----- R/GofHMMCop.R | 3 ++ R/GofMixtureCop.R | 2 - R/SimHMMCop.R | 41 +++++++++++++++++++----------------- R/SimMixtureCop.R | 4 ++- 8 files changed, 112 insertions(+), 53 deletions(-)