Sat, 15 Dec 2018

Package schoRsch updated to version 1.5 with previous version 1.4 dated 2017-02-14

Title: Tools for Analyzing Factorial Experiments
Description: Offers a helping hand to psychologists and other behavioral scientists who routinely deal with experimental data from factorial experiments. It includes several functions to format output from other R functions according to the style guidelines of the APA (American Psychological Association). This formatted output can be copied directly into manuscripts to facilitate data reporting. These features are backed up by a toolkit of several small helper functions, e.g., offering out-of-the-box outlier removal. The package lends its name to Georg "Schorsch" Schuessler, ingenious technician at the Department of Psychology III, University of Wuerzburg. For details on the implemented methods, see Roland Pfister and Markus Janczyk (2016) <doi: 10.20982/tqmp.12.2.p147>.
Author: Roland Pfister, Markus Janczyk
Maintainer: Roland Pfister <roland.pfister@psychologie.uni-wuerzburg.de>

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Package foolbox updated to version 0.1.1 with previous version 0.1.0 dated 2018-04-27

Title: Function Manipulation Toolbox
Description: Provides functionality for manipulating functions and translating them in metaprogramming.
Author: Thomas Mailund [aut, cre]
Maintainer: Thomas Mailund <mailund@birc.au.dk>

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Package conf updated to version 1.5.0 with previous version 1.4.0 dated 2018-11-02

Title: Visualization and Analysis of Statistical Measures of Confidence
Description: Enables: (1) plotting two-dimensional confidence regions, (2) coverage analysis of confidence region simulations and (3) calculating confidence intervals and the associated actual coverage for binomial proportions. Each is given in greater detail next. (1) Plots the two-dimensional confidence region for probability distribution parameters (supported distribution suffixes: cauchy, gamma, invgauss, logis, llogis, lnorm, norm, unif, weibull) corresponding to a user-given complete or right-censored dataset and level of significance. The crplot() algorithm plots more points in areas of greater curvature to ensure a smooth appearance throughout the confidence region boundary. An alternative heuristic plots a specified number of points at roughly uniform intervals along its boundary. Both heuristics build upon the radial profile log-likelihood ratio technique for plotting confidence regions given by Jaeger (2016) <doi:10.1080/00031305.2016.1182946>. (2) Performs confidence region coverage simulations for a random sample drawn from a user- specified parametric population distribution, or for a user-specified dataset and point of interest with coversim(). (3) Calculates confidence interval bounds for a binomial proportion with binomTest(), calculates the actual coverage with binomTestCoverage(), and plots the actual coverage with binomTestCoveragePlot(). Calculates confidence interval bounds for the binomial proportion using an ensemble of constituent confidence intervals with binomTestEnsemble().
Author: Christopher Weld [aut, cre] (<https://orcid.org/0000-0001-5902-9738>), Hayeon Park [aut], Lawrence Leemis [aut], Andrew Loh [ctb], Yuan Chang [ctb], Brock Crook [ctb], Xin Zhang [ctb]
Maintainer: Christopher Weld <ceweld@email.wm.edu>

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Package AdvDif4 updated to version 0.4.18 with previous version 0.3.18 dated 2018-09-13

Title: Solving 1D Advection Bi-Flux Diffusion Equation
Description: This software solves an Advection Bi-Flux Diffusive Problem using the Finite Difference Method FDM. Vasconcellos, J.F.V., Marinho, G.M., Zanni, J.H., 2016, Numerical analysis of an anomalous diffusion with a bimodal flux distribution. <doi:10.1016/j.rimni.2016.05.001>. Silva, L.G., Knupp, D.C., Bevilacqua, L., Galeao, A.C.N.R., Silva Neto, A.J., 2014, Formulation and solution of an Inverse Anomalous Diffusion Problem with Stochastic Techniques. <doi:10.5902/2179460X13184>. In this version, it is possible to include a source as a function depending on space and time, that is, s(x,t).
Author: Jader Lugon Junior, Pedro Paulo Gomes Watts Rodrigues, Luiz Bevilacqua, Gisele Moraes Marinho, Diego Campos Knupp, Joao Flavio Vieira Vasconcellos and Antonio Jose da Silva Neto.
Maintainer: Jader Lugon Junior <jlugonjr@gmail.com>

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Package redist updated to version 1.3-3 with previous version 1.3-2 dated 2018-10-17

Title: Markov Chain Monte Carlo Methods for Redistricting Simulation
Description: Enables researchers to sample redistricting plans from a pre- specified target distribution using a Markov Chain Monte Carlo algorithm. The package allows for the implementation of various constraints in the redistricting process such as geographic compactness and population parity requirements. The algorithm also can be used in combination with efficient simulation methods such as simulated and parallel tempering algorithms. Tools for analysis such as inverse probability reweighting and plotting functionality are included. The package implements methods described in Fifield, Higgins, Imai and Tarr (2016) ``A New Automated Redistricting Simulator Using Markov Chain Monte Carlo,'' working paper available at <https://imai.fas.harvard.edu/research/files/redist.pdf>.
Author: Ben Fifield <bfifield@princeton.edu>, Alexander Tarr <atarr@princeton.edu>, Michael Higgins <mikehiggins@k-state.edu>, and Kosuke Imai <imai@harvard.edu>
Maintainer: Ben Fifield <bfifield@princeton.edu>

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Package MHTdiscrete updated to version 1.0.1 with previous version 1.0.0 dated 2017-11-23

Title: Multiple Hypotheses Testing for Discrete Data
Description: A comprehensive tool for almost all existing multiple testing methods for discrete data. The package also provides some novel multiple testing procedures controlling FWER/FDR for discrete data. Given discrete p-values and their domains, the [method].p.adjust function returns adjusted p-values, which can be used to compare with the nominal significant level alpha and make decisions. For users' convenience, the functions also provide the output option for printing decision rules.
Author: Yalin Zhu, Wenge Guo
Maintainer: Yalin Zhu <yalin.zhu@outlook.com>

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Package QuantumOps updated to version 2.0 with previous version 1.0 dated 2018-11-19

Title: Performs Common Linear Algebra Operations Used in Quantum Computing
Description: Contains basic structures and operations used frequently in quantum computing. Intended to be a convenient tool to help in practicing the linear algebra involved in quantum operations. Has functionality for the creation of arbitrarily sized kets, bras, matrices and implements quantum gates, inner products, and tensor products. Can convert functions into equivalent quantum gates.
Author: Salonik Resch
Maintainer: Salonik Resch <resc0059@umn.edu>

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Package pillar updated to version 1.3.1 with previous version 1.3.0 dated 2018-07-14

Title: Coloured Formatting for Columns
Description: Provides a 'pillar' generic designed for formatting columns of data using the full range of colours provided by modern terminals.
Author: Kirill Müller [aut, cre], Hadley Wickham [aut], RStudio [cph]
Maintainer: Kirill Müller <krlmlr+r@mailbox.org>

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Package hunspell updated to version 3.0 with previous version 2.9 dated 2017-12-16

Title: High-Performance Stemmer, Tokenizer, and Spell Checker
Description: Low level spell checker and morphological analyzer based on the famous 'hunspell' library <https://hunspell.github.io>. The package can analyze or check individual words as well as parse text, latex, html or xml documents. For a more user-friendly interface use the 'spelling' package which builds on this package to automate checking of files, documentation and vignettes in all common formats.
Author: Jeroen Ooms [aut, cre], Authors of libhunspell [cph] (see AUTHORS file)
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>

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Package rscala updated to version 3.2.6 with previous version 3.2.5 dated 2018-12-08

Title: Bridge Between 'R' and 'Scala' with Callbacks
Description: 'Scala' <http://www.scala-lang.org/> is embedded in 'R' and callbacks from 'Scala' to 'R' are available. Support is provided to write 'R' packages that access 'Scala'. After installation, please run 'rscala::scalaConfig()'.
Author: David B. Dahl [aut, cre]
Maintainer: David B. Dahl <dahl@stat.byu.edu>

Diff between rscala versions 3.2.5 dated 2018-12-08 and 3.2.6 dated 2018-12-15

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Package ragtop updated to version 1.0.0 with previous version 0.5 dated 2016-09-28

Title: Pricing Equity Derivatives with Extensions of Black-Scholes
Description: Algorithms to price American and European equity options, convertible bonds and a variety of other financial derivatives. It uses an extension of the usual Black-Scholes model in which jump to default may occur at a probability specified by a power-law link between stock price and hazard rate as found in the paper by Takahashi, Kobayashi, and Nakagawa (2001) <doi:10.3905/jfi.2001.319302>. We use ideas and techniques from Andersen and Buffum (2002) <doi:10.2139/ssrn.355308> and Linetsky (2006) <doi:10.1111/j.1467-9965.2006.00271.x>.
Author: Brian K. Boonstra
Maintainer: Brian K. Boonstra <ragtop@boonstra.org>

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Package psda updated to version 1.2.0 with previous version 1.0.1 dated 2018-10-08

Title: Polygonal Symbolic Data Analysis
Description: An implementation of symbolic polygonal data analysis. The package presents the estimation of main descriptive statistical measures, e.g, mean, covariance, variance, correlation and coefficient of variation. In addition, transformation of the data in polygons. Empirical probability distribution function based on polygonal histogram and regression models are presented.
Author: Wagner Silva [aut, cre, ths], Renata Souza [aut], Francisco Cysneiros [aut]
Maintainer: Wagner Silva <wjfs@cin.ufpe.br>

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Package GMCM updated to version 1.3.0 with previous version 1.2.4 dated 2017-01-13

Title: Fast Estimation of Gaussian Mixture Copula Models
Description: Unsupervised Clustering and Meta-analysis using Gaussian Mixture Copula Models.
Author: Anders Ellern Bilgrau, Martin Boegsted, Poul Svante Eriksen
Maintainer: Anders Ellern Bilgrau <anders.ellern.bilgrau@gmail.com>

Diff between GMCM versions 1.2.4 dated 2017-01-13 and 1.3.0 dated 2018-12-15

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Package WordPools updated to version 1.1-1 with previous version 1.0-2 dated 2012-12-16

Title: Classical Word Pools Used in Studies of Learning and Memory
Description: Collects several classical word pools used most often to provide lists of words in psychological studies of learning and memory. It provides a simple function, 'pickList' for selecting random samples of words within given ranges.
Author: Michael Friendly [aut, cre] (<https://orcid.org/0000-0002-3237-0941>)
Maintainer: Michael Friendly <friendly@yorku.ca>

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Package linl updated to version 0.0.3 with previous version 0.0.2 dated 2017-10-29

Title: 'linl' is not 'Letter'
Description: A 'LaTeX' Letter class for 'rmarkdown', using the 'pandoc-letter' template adapted for use with 'markdown'.
Author: Dirk Eddelbuettel and Aaron Wolen
Maintainer: Dirk Eddelbuettel <edd@debian.org>

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Package PowerUpR updated to version 1.0.2 with previous version 1.0.1 dated 2018-10-18

Title: Power Analysis Tools for Multilevel Randomized Experiments
Description: Includes tools to calculate statistical power, minimum detectable effect size, and minimum required sample size for various multilevel randomized experiments with continuous outcomes. Some of the functions can assist with planning two- and three-level cluster-randomized trials (CRTs) sensitive to moderation effects, and with planning two-level CRTs sensitive to 2-2-1 and 2-1-1 mediation effects. See 'PowerUp!' Excel series at <https://www.causalevaluation.org/>.
Author: Metin Bulus [aut, cre], Nianbo Dong [aut], Benjamin Kelcey [aut], Jessaca Spybrook [aut]
Maintainer: Metin Bulus <bulusmetin@gmail.com>

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Package iNEXT updated to version 2.0.18 with previous version 2.0.17 dated 2018-09-19

Title: Interpolation and Extrapolation for Species Diversity
Description: Provides simple functions to compute and plot two types (sample-size- and coverage-based) rarefaction and extrapolation of species diversity (Hill numbers) for individual-based (abundance) data or sampling-unit- based (incidence) data.
Author: T. C. Hsieh, K. H. Ma and Anne Chao
Maintainer: T. C. Hsieh <euler96@gmail.com>

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Package spacyr updated to version 1.0 with previous version 0.9.91 dated 2018-07-16

Title: Wrapper to the 'spaCy' 'NLP' Library
Description: An R wrapper to the 'Python' 'spaCy' 'NLP' library, from <http://spacy.io>.
Author: Kenneth Benoit [cre, aut, cph] (<https://orcid.org/0000-0002-0797-564X>), Akitaka Matsuo [aut] (<https://orcid.org/0000-0002-3323-6330>), European Research Council [fnd] (ERC-2011-StG 283794-QUANTESS)
Maintainer: Kenneth Benoit <kbenoit@lse.ac.uk>

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 spacyr-1.0/spacyr/NEWS.md                                      |    8 
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 spacyr-1.0/spacyr/R/entity-functions.R                         |   62 -
 spacyr-1.0/spacyr/R/nounphrase-functions.R                     |only
 spacyr-1.0/spacyr/R/parse-extractor-functions.R                |   49 -
 spacyr-1.0/spacyr/R/spacy_extract_entity.R                     |only
 spacyr-1.0/spacyr/R/spacy_extract_nounphrases.R                |only
 spacyr-1.0/spacyr/R/spacy_initialize.R                         |  136 +--
 spacyr-1.0/spacyr/R/spacy_install.R                            |  235 +----
 spacyr-1.0/spacyr/R/spacy_langmodel_functions.R                |   21 
 spacyr-1.0/spacyr/R/spacy_parse.R                              |  138 ++-
 spacyr-1.0/spacyr/R/spacy_tokenize.R                           |only
 spacyr-1.0/spacyr/R/utils.R                                    |   10 
 spacyr-1.0/spacyr/README.md                                    |  429 +---------
 spacyr-1.0/spacyr/build                                        |only
 spacyr-1.0/spacyr/inst/WORDLIST                                |only
 spacyr-1.0/spacyr/inst/doc/using_spacyr.pdf                    |only
 spacyr-1.0/spacyr/inst/doc/using_spacyr.pdf.asis               |only
 spacyr-1.0/spacyr/inst/python/initialize_spacyPython.py        |   21 
 spacyr-1.0/spacyr/inst/python/spacyr_class.py                  |  274 ++++++
 spacyr-1.0/spacyr/man/entity_extract.Rd                        |    7 
 spacyr-1.0/spacyr/man/get-functions.Rd                         |    7 
 spacyr-1.0/spacyr/man/nounphrase_extract.Rd                    |only
 spacyr-1.0/spacyr/man/process_document.Rd                      |    8 
 spacyr-1.0/spacyr/man/spacy_extract_entity.Rd                  |only
 spacyr-1.0/spacyr/man/spacy_extract_nounphrases.Rd             |only
 spacyr-1.0/spacyr/man/spacy_finalize.Rd                        |    2 
 spacyr-1.0/spacyr/man/spacy_initialize.Rd                      |    4 
 spacyr-1.0/spacyr/man/spacy_install.Rd                         |   14 
 spacyr-1.0/spacyr/man/spacy_parse.Rd                           |   39 
 spacyr-1.0/spacyr/man/spacy_tokenize.Rd                        |only
 spacyr-1.0/spacyr/man/spacy_uninstall.Rd                       |   15 
 spacyr-1.0/spacyr/man/spacy_upgrade.Rd                         |    6 
 spacyr-1.0/spacyr/man/spacyr-package.Rd                        |    4 
 spacyr-1.0/spacyr/tests/spelling.R                             |only
 spacyr-1.0/spacyr/tests/testthat/test-1-spacy_initialize.R     |   26 
 spacyr-1.0/spacyr/tests/testthat/test-2-spacy_parse.R          |   88 +-
 spacyr-1.0/spacyr/tests/testthat/test-3-spacy_tokenize.R       |only
 spacyr-1.0/spacyr/tests/testthat/test-4-entity-functions.R     |only
 spacyr-1.0/spacyr/tests/testthat/test-5-nounphrase-functions.R |only
 spacyr-1.0/spacyr/tests/testthat/test-6-quanteda-methods.R     |only
 spacyr-1.0/spacyr/tests/testthat/test-7-spacy-install.R        |only
 spacyr-1.0/spacyr/tests/testthat/utils.R                       |    9 
 spacyr-1.0/spacyr/vignettes                                    |only
 55 files changed, 855 insertions(+), 887 deletions(-)

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