Title: Access to the Neotoma Paleoecological Database Through R
Description: Access paleoecological datasets from the Neotoma Paleoecological
Database using the published API (<http://api.neotomadb.org/>). The functions
in this package access various pre-built API functions and attempt to return
the results from Neotoma in a usable format for researchers and the public.
Author: Simon J. Goring [aut, cre],
Gavin L. Simpson [aut],
Jeremiah P. Marsicek [ctb],
Karthik Ram [aut],
Luke Sosalla [ctb]
Maintainer: Simon J. Goring <goring@wisc.edu>
Diff between neotoma versions 1.7.2 dated 2018-09-26 and 1.7.4 dated 2019-01-04
DESCRIPTION | 10 MD5 | 26 +- NAMESPACE | 4 NEWS | 9 R/compile_downloads.R | 4 R/get_dataset.R | 124 ++++++++++ R/get_site.R | 98 ++++++++ R/param_check.R | 15 - README.md | 27 +- man/compile_downloads.Rd | 7 man/get_dataset.integer.Rd |only man/get_dataset.numeric.Rd |only man/get_site.dataset.Rd | 2 man/get_site.integer.Rd |only man/get_site.numeric.Rd |only tests/testthat/test_neotoma.R | 482 +++++++++++++++++++++--------------------- 16 files changed, 538 insertions(+), 270 deletions(-)
Title: Measuring Multivariate Dependence Using Distance Multivariance
Description: Distance multivariance is a measure of dependence which can be used to detect
and quantify dependence. The necessary functions are implemented in this packages,
and examples are given. For the theoretic background we refer to the papers:
B. Böttcher, M. Keller-Ressel, R.L. Schilling, Detecting independence of random vectors: generalized distance covariance and Gaussian covariance. VMSTA, 2018, Vol. 5, No. 3, 353-383. <arXiv:1711.07778>.
B. Böttcher, M. Keller-Ressel, R.L. Schilling, Distance multivariance: New dependence measures for random vectors. <arXiv:1711.07775>.
B. Böttcher, Dependence Structures - Estimation and Visualization Using Distance Multivariance. <arXiv:1712.06532>.
G. Berschneider, B. Böttcher, On complex Gaussian random fields, Gaussian quadratic forms and sample distance multivariance. <arXiv:1808.07280>.
Author: Björn Böttcher [aut, cre],
Martin Keller-Ressel [ctb]
Maintainer: Björn Böttcher <bjoern.boettcher@tu-dresden.de>
Diff between multivariance versions 1.2.0 dated 2018-09-13 and 1.2.1 dated 2019-01-04
DESCRIPTION | 18 +++++++++--------- MD5 | 12 ++++++------ R/multivariance-functions.R | 19 +++++++++++-------- inst/NEWS | 14 ++++++++++++++ man/multivariance-package.Rd | 12 ++++++------ man/multivariance.pvalue.Rd | 2 +- man/multivariances.all.Rd | 3 +++ 7 files changed, 50 insertions(+), 30 deletions(-)
Title: A Fast Solver for Henderson Mixed Model Equation via Row
Operations
Description: Consider the linear mixed model with normal random effects. A typical method to solve Henderson's Mixed Model Equations (HMME) is recursive estimation of the fixed effects and random effects. We provide a fast, stable, and scalable solver to the HMME without computing matrix inverse. See Kim (2017) <arXiv:1710.09663> for more details.
Author: Jiwoong Kim [aut, cre]
Maintainer: Jiwoong Kim <jwboys26@gmail.com>
Diff between HMMEsolver versions 0.1.1 dated 2018-09-11 and 0.1.2 dated 2019-01-04
DESCRIPTION | 16 +++++++--------- MD5 | 6 +++--- R/SolveHMME.R | 2 +- build/partial.rdb |binary 4 files changed, 11 insertions(+), 13 deletions(-)
Title: Exemplar Data Sets for Student Growth Percentiles (SGP) Analyses
Description: Data sets utilized by the 'SGP' package as exemplars for users to conduct their own student growth percentiles (SGP) analyses.
Author: Damian W. Betebenner [aut, cre],
Adam R. Van Iwaarden [aut],
Ben Domingue [aut]
Maintainer: Damian W. Betebenner <dbetebenner@nciea.org>
Diff between SGPdata versions 20.0-0.0 dated 2018-04-10 and 21.0-0.0 dated 2019-01-04
DESCRIPTION | 8 MD5 | 23 +- R/zzz.R | 2 build/vignette.rds |binary data/sgpData.rda |binary data/sgpData_INSTRUCTOR_NUMBER.rda |binary data/sgpData_LONG.rda |binary inst/CITATION | 8 inst/NEWS | 4 inst/doc/SGPdata.html | 348 +++++++++++++++++++++++++------- man/SGPdata-package.Rd | 4 man/sgpData.Rd | 20 - vignettes/releases/SGPdata-21.0-0.0.Rmd |only 13 files changed, 316 insertions(+), 101 deletions(-)
Title: Tools for Parsing, Manipulating, and Graphing Taxonomic
Abundance Data
Description: A set of tools for parsing, manipulating, and graphing data
classified by a hierarchy (e.g. a taxonomy).
Author: Zachary Foster [aut, cre],
Niklaus Grunwald [ths],
Rob Gilmore [ctb]
Maintainer: Zachary Foster <zacharyfoster1989@gmail.com>
Diff between metacoder versions 0.3.0.1 dated 2018-11-19 and 0.3.1 dated 2019-01-04
DESCRIPTION | 26 ++++------- MD5 | 68 +++++++++++++++-------------- NAMESPACE | 3 + NEWS.md | 17 +++++++ R/calculations.R | 6 ++ R/heat_tree--legend.R | 2 R/heat_tree--mapping.R | 2 R/heat_tree.R | 21 ++++++-- R/heat_tree_matrix.R | 14 ++++- R/parsers.R | 56 +++++++++++++++++++++++ R/remove_ambiguous.R | 3 - R/writers.R | 68 ++++++++++++++++++++++++++--- build/vignette.rds |binary man/heat_tree_matrix.Rd | 15 +++++- man/make_dada2_asv_table.Rd |only man/make_dada2_tax_table.Rd |only man/ncbi_taxon_sample.Rd | 27 +++++------ man/parse_dada2.Rd |only man/parse_edge_list.Rd | 3 - man/parse_greengenes.Rd | 3 - man/parse_mothur_tax_summary.Rd | 3 - man/parse_mothur_taxonomy.Rd | 3 - man/parse_newick.Rd | 3 - man/parse_phylo.Rd | 3 - man/parse_phyloseq.Rd | 26 ++++------- man/parse_qiime_biom.Rd | 26 ++++------- man/parse_rdp.Rd | 3 - man/parse_silva_fasta.Rd | 3 - man/parse_ubiome.Rd | 3 - man/parse_unite_general.Rd | 3 - man/write_greengenes.Rd | 6 +- man/write_mothur_taxonomy.Rd | 11 ++-- man/write_rdp.Rd | 5 +- man/write_silva_fasta.Rd | 9 +++ man/write_unite_general.Rd | 6 +- tests/testthat/example_data/dada2.RData |only tests/testthat/test--parsers_and_writers.R | 13 +++++ 37 files changed, 326 insertions(+), 134 deletions(-)
More information about EditImputeCont at CRAN
Permanent link
Title: Combined Model Selection Criteria
Description: Functions for computing optimal convex combinations of
model selection criteria based on ranks, along with utility
functions for constructing model lists, MSCs, and priors on
model lists.
Author: Andrew K. Smith
Maintainer: Andrew K. Smith <andrewsmith81@gmail.com>
Diff between CombMSC versions 1.4.2 dated 2008-02-26 and 1.4.2.1 dated 2019-01-04
DESCRIPTION | 30 ++++++++++++++++++------------ MD5 |only NAMESPACE |only 3 files changed, 18 insertions(+), 12 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-07-01 0.9.4
2012-05-05 0.9.3
Title: Classification and Clustering of Sequencing Data Based on a
Poisson Model
Description: Implements the methods described in the paper, Witten (2011) Classification and Clustering of Sequencing Data using a Poisson Model, Annals of Applied Statistics 5(4) 2493-2518.
Author: Daniela Witten
Maintainer: Daniela Witten <dwitten@u.washington.edu>
Diff between PoiClaClu versions 1.0.2 dated 2013-12-02 and 1.0.2.1 dated 2019-01-04
DESCRIPTION | 10 +++++----- MD5 | 4 ++-- NAMESPACE | 14 +++++++++++++- 3 files changed, 20 insertions(+), 8 deletions(-)
Title: Lassoed Principal Components for Testing Significance of
Features
Description: Implements the LPC method of Witten&Tibshirani(Annals of Applied Statistics 2008) for identification of significant genes in a microarray experiment.
Author: Daniela M Witten and Robert Tibshirani
Maintainer: Daniela M Witten <dwitten@uw.edu>
Diff between lpc versions 1.0.2 dated 2013-12-15 and 1.0.2.1 dated 2019-01-04
DESCRIPTION | 10 +++++----- MD5 | 4 ++-- NAMESPACE | 11 ++++++++++- 3 files changed, 17 insertions(+), 8 deletions(-)
Title: World Register of Marine Species (WoRMS) Client
Description: Client for World Register of Marine Species
(<http://www.marinespecies.org/>). Includes functions for each
of the API methods, including searching for names by name, date and
common names, searching using external identifiers, fetching
synonyms, as well as fetching taxonomic children and
taxonomic classification.
Author: Scott Chamberlain [aut, cre] (<https://orcid.org/0000-0003-1444-9135>)
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between worrms versions 0.3.0 dated 2018-11-07 and 0.3.2 dated 2019-01-04
worrms-0.3.0/worrms/tests/fixtures/vcr_cassettes/wm_records_date.yml |only worrms-0.3.2/worrms/DESCRIPTION | 12 - worrms-0.3.2/worrms/LICENSE | 2 worrms-0.3.2/worrms/MD5 | 21 +-- worrms-0.3.2/worrms/NEWS.md | 11 + worrms-0.3.2/worrms/README.md | 65 +++++----- worrms-0.3.2/worrms/build/vignette.rds |binary worrms-0.3.2/worrms/inst/doc/worrms_vignette.Rmd | 49 ++++--- worrms-0.3.2/worrms/inst/doc/worrms_vignette.html | 49 ++++--- worrms-0.3.2/worrms/tests/testthat/helper-worrms.R | 13 ++ worrms-0.3.2/worrms/tests/testthat/test-wm_records_date.R | 17 +- worrms-0.3.2/worrms/vignettes/worrms_vignette.Rmd | 49 ++++--- 12 files changed, 166 insertions(+), 122 deletions(-)
Title: Simple Data Frames
Description: Provides a 'tbl_df' class (the 'tibble') that provides
stricter checking and better formatting than the traditional data frame.
Author: Kirill Müller [aut, cre],
Hadley Wickham [aut],
Romain Francois [ctb],
Jennifer Bryan [ctb],
RStudio [cph]
Maintainer: Kirill Müller <krlmlr+r@mailbox.org>
Diff between tibble versions 1.4.2 dated 2018-01-22 and 2.0.0 dated 2019-01-04
tibble-1.4.2/tibble/man/tibble-options.Rd |only tibble-1.4.2/tibble/man/tidy_names.Rd |only tibble-1.4.2/tibble/tests/testthat/test-repair_names.R |only tibble-1.4.2/tibble/tests/testthat/test-utils-format.R |only tibble-2.0.0/tibble/DESCRIPTION | 30 tibble-2.0.0/tibble/MD5 | 201 +-- tibble-2.0.0/tibble/NAMESPACE | 24 tibble-2.0.0/tibble/NEWS.md | 164 ++ tibble-2.0.0/tibble/R/add.R | 43 tibble-2.0.0/tibble/R/as_tibble.R | 308 +++-- tibble-2.0.0/tibble/R/check-names.R | 98 - tibble-2.0.0/tibble/R/compat-lazyeval.R | 36 tibble-2.0.0/tibble/R/compat-lifecycle.R |only tibble-2.0.0/tibble/R/deprecated.R |only tibble-2.0.0/tibble/R/enframe.R | 47 tibble-2.0.0/tibble/R/glimpse.R | 59 tibble-2.0.0/tibble/R/lst.R | 86 - tibble-2.0.0/tibble/R/msg-format.R |only tibble-2.0.0/tibble/R/msg.R |only tibble-2.0.0/tibble/R/new.R | 189 +-- tibble-2.0.0/tibble/R/repair-names.R | 513 +++++++- tibble-2.0.0/tibble/R/rownames.R | 58 tibble-2.0.0/tibble/R/subsetting.R |only tibble-2.0.0/tibble/R/tbl-df.r | 172 +- tibble-2.0.0/tibble/R/tibble-package.R | 68 - tibble-2.0.0/tibble/R/tibble.R | 266 ++-- tibble-2.0.0/tibble/R/tribble.R | 55 tibble-2.0.0/tibble/R/type-sum.r | 13 tibble-2.0.0/tibble/R/utils-format.r | 144 +- tibble-2.0.0/tibble/R/utils.r | 81 - tibble-2.0.0/tibble/R/view.R |only tibble-2.0.0/tibble/R/wrap.R | 12 tibble-2.0.0/tibble/R/zzz.R |only tibble-2.0.0/tibble/README.md | 82 - tibble-2.0.0/tibble/build/tibble.pdf |only tibble-2.0.0/tibble/build/vignette.rds |binary tibble-2.0.0/tibble/inst/doc/extending.R | 3 tibble-2.0.0/tibble/inst/doc/extending.Rmd | 4 tibble-2.0.0/tibble/inst/doc/extending.html | 103 - tibble-2.0.0/tibble/inst/doc/tibble.R | 63 - tibble-2.0.0/tibble/inst/doc/tibble.Rmd | 66 - tibble-2.0.0/tibble/inst/doc/tibble.html | 276 +++- tibble-2.0.0/tibble/man/add_column.Rd | 6 tibble-2.0.0/tibble/man/add_row.Rd | 23 tibble-2.0.0/tibble/man/as_tibble.Rd | 138 +- tibble-2.0.0/tibble/man/deprecated.Rd |only tibble-2.0.0/tibble/man/enframe.Rd | 21 tibble-2.0.0/tibble/man/figures/lifecycle-archived.svg |only tibble-2.0.0/tibble/man/figures/lifecycle-defunct.svg |only tibble-2.0.0/tibble/man/figures/lifecycle-deprecated.svg |only tibble-2.0.0/tibble/man/figures/lifecycle-experimental.svg |only tibble-2.0.0/tibble/man/figures/lifecycle-maturing.svg |only tibble-2.0.0/tibble/man/figures/lifecycle-questioning.svg |only tibble-2.0.0/tibble/man/figures/lifecycle-soft-deprecated.svg |only tibble-2.0.0/tibble/man/figures/lifecycle-stable.svg |only tibble-2.0.0/tibble/man/formatting.Rd | 118 + tibble-2.0.0/tibble/man/frame_matrix.Rd | 5 tibble-2.0.0/tibble/man/glimpse.Rd | 9 tibble-2.0.0/tibble/man/is.tibble.Rd |only tibble-2.0.0/tibble/man/is_tibble.Rd | 4 tibble-2.0.0/tibble/man/lst.Rd |only tibble-2.0.0/tibble/man/name-repair-retired.Rd |only tibble-2.0.0/tibble/man/name-repair.Rd |only tibble-2.0.0/tibble/man/new_tibble.Rd | 82 - tibble-2.0.0/tibble/man/print.tbl_df.Rd |only tibble-2.0.0/tibble/man/reexports.Rd | 3 tibble-2.0.0/tibble/man/rownames.Rd | 23 tibble-2.0.0/tibble/man/subsetting.Rd |only tibble-2.0.0/tibble/man/tbl_df-class.Rd |only tibble-2.0.0/tibble/man/tbl_sum.Rd | 9 tibble-2.0.0/tibble/man/tibble-package.Rd | 53 tibble-2.0.0/tibble/man/tibble.Rd | 174 ++ tibble-2.0.0/tibble/man/tribble.Rd | 10 tibble-2.0.0/tibble/man/view.Rd |only tibble-2.0.0/tibble/src/Makevars.win |only tibble-2.0.0/tibble/src/matrixToDataFrame.c | 35 tibble-2.0.0/tibble/src/tibble.h | 2 tibble-2.0.0/tibble/tests/testthat/helper-api.R |only tibble-2.0.0/tibble/tests/testthat/helper-output.R | 12 tibble-2.0.0/tibble/tests/testthat/helper-type-sum.R | 10 tibble-2.0.0/tibble/tests/testthat/output/glimpse/all-35.txt | 6 tibble-2.0.0/tibble/tests/testthat/output/glimpse/all-50.txt | 2 tibble-2.0.0/tibble/tests/testthat/output/glimpse/iris-70-na-nrow.txt | 10 tibble-2.0.0/tibble/tests/testthat/output/glimpse/iris-70.txt | 10 tibble-2.0.0/tibble/tests/testthat/output/glimpse/iris-nested-df-70.txt |only tibble-2.0.0/tibble/tests/testthat/output/glimpse/iris-nested-tbl-70.txt |only tibble-2.0.0/tibble/tests/testthat/output/glimpse/mtcars-70.txt | 22 tibble-2.0.0/tibble/tests/testthat/output/trunc_mat/POSIXlt-8-60.txt | 2 tibble-2.0.0/tibble/tests/testthat/output/trunc_mat/all--30.txt | 2 tibble-2.0.0/tibble/tests/testthat/output/trunc_mat/all-1-30-0.txt | 2 tibble-2.0.0/tibble/tests/testthat/output/trunc_mat/all-1-30-2.txt | 2 tibble-2.0.0/tibble/tests/testthat/output/trunc_mat/iris--70.txt | 2 tibble-2.0.0/tibble/tests/testthat/output/trunc_mat/iris-3-5.txt | 2 tibble-2.0.0/tibble/tests/testthat/output/trunc_mat/iris-5-30.txt | 4 tibble-2.0.0/tibble/tests/testthat/output/trunc_mat/iris-inf-30.txt |only tibble-2.0.0/tibble/tests/testthat/output/trunc_mat/iris-neg-30.txt |only tibble-2.0.0/tibble/tests/testthat/output/trunc_mat/iris_10_unk-10-70.txt |only tibble-2.0.0/tibble/tests/testthat/output/trunc_mat/iris_11_unk-10-70.txt |only tibble-2.0.0/tibble/tests/testthat/output/trunc_mat/iris_9_unk-10-70.txt |only tibble-2.0.0/tibble/tests/testthat/output/trunc_mat/iris_unk-10-70.txt | 2 tibble-2.0.0/tibble/tests/testthat/output/trunc_mat/long-5-30.txt | 2 tibble-2.0.0/tibble/tests/testthat/output/trunc_mat/long_unk-5-30.txt | 2 tibble-2.0.0/tibble/tests/testthat/output/trunc_mat/mtcars-8-30.txt | 4 tibble-2.0.0/tibble/tests/testthat/output/trunc_mat/zero-cols_unk-5-30.txt | 2 tibble-2.0.0/tibble/tests/testthat/output/trunc_mat/zero-rows_unk-5-30.txt | 2 tibble-2.0.0/tibble/tests/testthat/output/trunc_mat/zero_rows--30.txt | 2 tibble-2.0.0/tibble/tests/testthat/test-add.R | 32 tibble-2.0.0/tibble/tests/testthat/test-data-frame.R | 593 +++++++--- tibble-2.0.0/tibble/tests/testthat/test-enframe.R | 55 tibble-2.0.0/tibble/tests/testthat/test-glimpse.R | 52 tibble-2.0.0/tibble/tests/testthat/test-matrix.R | 68 - tibble-2.0.0/tibble/tests/testthat/test-msg-format.R |only tibble-2.0.0/tibble/tests/testthat/test-msg.R |only tibble-2.0.0/tibble/tests/testthat/test-name_repair.R |only tibble-2.0.0/tibble/tests/testthat/test-options.R | 3 tibble-2.0.0/tibble/tests/testthat/test-rownames.R | 49 tibble-2.0.0/tibble/tests/testthat/test-syntactic_names.R |only tibble-2.0.0/tibble/tests/testthat/test-tbl-df.R | 206 ++- tibble-2.0.0/tibble/tests/testthat/test-tribble.R | 26 tibble-2.0.0/tibble/tests/testthat/test-trunc-mat.R | 37 tibble-2.0.0/tibble/vignettes/extending.Rmd | 4 tibble-2.0.0/tibble/vignettes/tibble.Rmd | 66 - tibble-2.0.0/tibble/vignettes/timing.rds |only 123 files changed, 3572 insertions(+), 1702 deletions(-)
Title: Database Interface and 'MySQL' Driver for R
Description: Legacy 'DBI' interface to 'MySQL' / 'MariaDB' based on old code
ported from S-PLUS. A modern 'MySQL' client based on 'Rcpp' is available
from the 'RMariaDB' package.
Author: Jeroen Ooms [aut, cre] (<https://orcid.org/0000-0002-4035-0289>),
David James [aut],
Saikat DebRoy [aut],
Hadley Wickham [aut],
Jeffrey Horner [aut],
RStudio [cph]
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>
Diff between RMySQL versions 0.10.15 dated 2018-05-13 and 0.10.16 dated 2019-01-04
RMySQL-0.10.15/RMySQL/tools/mysql-connector-c.rb |only RMySQL-0.10.16/RMySQL/DESCRIPTION | 6 +++--- RMySQL-0.10.16/RMySQL/MD5 | 11 +++++------ RMySQL-0.10.16/RMySQL/NEWS.md | 8 +++++++- RMySQL-0.10.16/RMySQL/src/Makevars.win | 18 +++++++++++------- RMySQL-0.10.16/RMySQL/src/RS-MySQL.h | 4 ++++ RMySQL-0.10.16/RMySQL/tools/winlibs.R | 8 ++++---- 7 files changed, 34 insertions(+), 21 deletions(-)
Title: Tools to Manage a Parametric Function that Describes Phenology
Description: Functions used to fit and test the phenology of species based on counts.
Author: Marc Girondot
Maintainer: Marc Girondot <marc.girondot@u-psud.fr>
Diff between phenology versions 7.2 dated 2018-09-27 and 7.3 dated 2019-01-04
phenology-7.2/phenology/R/add_SD.R |only phenology-7.2/phenology/man/add_SD.Rd |only phenology-7.3/phenology/DESCRIPTION | 12 phenology-7.3/phenology/MD5 | 70 +- phenology-7.3/phenology/NAMESPACE | 4 phenology-7.3/phenology/NEWS | 14 phenology-7.3/phenology/R/ECFOCF_f.R | 16 phenology-7.3/phenology/R/Lnegbin.R | 4 phenology-7.3/phenology/R/Tagloss_L.R | 25 - phenology-7.3/phenology/R/Tagloss_LengthObs.R | 8 phenology-7.3/phenology/R/Tagloss_cumul.R |only phenology-7.3/phenology/R/Tagloss_daymax.R | 69 +- phenology-7.3/phenology/R/Tagloss_fit.R | 92 +++ phenology-7.3/phenology/R/Tagloss_format.R | 1 phenology-7.3/phenology/R/Tagloss_model.R | 432 +++++++++++++++++- phenology-7.3/phenology/R/add_SE.R |only phenology-7.3/phenology/R/daily_count.R | 50 +- phenology-7.3/phenology/R/fitRMU.R | 1 phenology-7.3/phenology/R/fit_phenology.R | 112 ++-- phenology-7.3/phenology/R/format_par.R | 221 ++++++--- phenology-7.3/phenology/R/lnLCF.R | 3 phenology-7.3/phenology/R/phenology-package.R | 4 phenology-7.3/phenology/R/plot.ECFOCF.R | 4 phenology-7.3/phenology/R/plot.Tagloss.R | 539 +++++++++-------------- phenology-7.3/phenology/R/plot.TaglossData.R |only phenology-7.3/phenology/R/summary.phenology.R | 11 phenology-7.3/phenology/man/Tagloss_L.Rd | 5 phenology-7.3/phenology/man/Tagloss_LengthObs.Rd | 11 phenology-7.3/phenology/man/Tagloss_cumul.Rd |only phenology-7.3/phenology/man/Tagloss_daymax.Rd | 12 phenology-7.3/phenology/man/Tagloss_fit.Rd | 101 +++- phenology-7.3/phenology/man/Tagloss_format.Rd | 9 phenology-7.3/phenology/man/Tagloss_model.Rd | 68 ++ phenology-7.3/phenology/man/Tagloss_simulate.Rd | 9 phenology-7.3/phenology/man/add_SE.Rd |only phenology-7.3/phenology/man/fit_phenology.Rd | 29 + phenology-7.3/phenology/man/logLik.Tagloss.Rd | 6 phenology-7.3/phenology/man/phenology-package.Rd | 4 phenology-7.3/phenology/man/plot.Tagloss.Rd | 41 + phenology-7.3/phenology/man/plot.TaglossData.Rd |only 40 files changed, 1331 insertions(+), 656 deletions(-)
Title: Spatial Pattern Detection in Genetic Distance Data Using Moran's
Eigenvector Maps
Description: Can detect relatively weak spatial genetic patterns by using Moran's Eigenvector Maps (MEM) to extract only the spatial component of genetic variation. Has applications in landscape genetics where the movement and dispersal of organisms are studied using neutral genetic variation.
Author: Pedro Peres-Neto, Paul Galpern
Maintainer: Paul Galpern <pgalpern@ucalgary.ca>
Diff between memgene versions 1.0 dated 2014-06-05 and 1.0.1 dated 2019-01-04
DESCRIPTION | 10 +++++----- MD5 | 8 ++++---- NAMESPACE | 7 +++++++ build/vignette.rds |binary inst/doc/memgeneTutorial.pdf |binary 5 files changed, 16 insertions(+), 9 deletions(-)
Title: GNU Privacy Guard for R
Description: Bindings to GnuPG for working with OpenGPG (RFC4880) cryptographic methods.
Includes utilities for public key encryption, creating and verifying digital signatures,
and managing your local keyring. Note that some functionality depends on the version of
GnuPG that is installed on the system. On Windows this package can be used together with
'GPG4Win' which provides a GUI for managing keys and entering passphrases.
Author: Jeroen Ooms [aut, cre] (<https://orcid.org/0000-0002-4035-0289>)
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>
Diff between gpg versions 0.5 dated 2017-03-21 and 1.0 dated 2019-01-04
DESCRIPTION | 13 MD5 | 40 - NEWS | 7 R/encrypt.R | 7 R/keys.R | 2 R/signing.R | 11 build/vignette.rds |binary inst/doc/intro.R | 2 inst/doc/intro.Rmd | 2 inst/doc/intro.html | 1711 +++++++++++++++++++++++++++++++++++++++++++++------- man/gpg_encrypt.Rd | 5 man/gpg_info.Rd | 3 man/gpg_keygen.Rd | 1 man/gpg_keys.Rd | 1 man/gpg_sign.Rd | 2 src/Makevars.win | 10 src/common.h | 1 src/encrypt.c | 21 src/engine.c | 18 tools/winlibs.R | 5 vignettes/intro.Rmd | 2 21 files changed, 1601 insertions(+), 263 deletions(-)
Title: The Generalized DINA Model Framework
Description: A set of psychometric tools for cognitive diagnosis modeling for both dichotomous and polytomous responses. Various cognitive diagnosis models can be estimated, include the generalized deterministic inputs, noisy and gate (G-DINA) model by de la Torre (2011) <DOI:10.1007/s11336-011-9207-7>, the sequential G-DINA model by Ma and de la Torre (2016) <DOI:10.1111/bmsp.12070>, and many other models they subsume. Joint attribute distribution can be independent, saturated, higher-order, loglinear smoothed or structured. Q-matrix validation, item and model fit statistics, model comparison at test and item level and differential item functioning can also be conducted. A graphical user interface is also provided.
Author: Wenchao Ma [aut, cre, cph],
Jimmy de la Torre [aut, cph],
Miguel Sorrel [ctb]
Maintainer: Wenchao Ma <wenchao.ma@ua.edu>
Diff between GDINA versions 2.2.0 dated 2018-10-30 and 2.3.2 dated 2019-01-04
GDINA-2.2.0/GDINA/R/Est.R |only GDINA-2.2.0/GDINA/R/Louis.R |only GDINA-2.2.0/GDINA/R/att.struc.R |only GDINA-2.2.0/GDINA/R/designmatrix.R |only GDINA-2.2.0/GDINA/R/initials.R |only GDINA-2.3.2/GDINA/DESCRIPTION | 32 - GDINA-2.3.2/GDINA/MD5 | 118 +-- GDINA-2.3.2/GDINA/NAMESPACE | 1 GDINA-2.3.2/GDINA/NEWS.md | 7 GDINA-2.3.2/GDINA/R/DTM.R | 7 GDINA-2.3.2/GDINA/R/ExportedFuncs.R | 195 +++++- GDINA-2.3.2/GDINA/R/GDI.R | 44 + GDINA-2.3.2/GDINA/R/GDINA-package.R | 16 GDINA-2.3.2/GDINA/R/GDINA.R | 205 +++--- GDINA-2.3.2/GDINA/R/GMSCDM.R |only GDINA-2.3.2/GDINA/R/HO.R | 51 + GDINA-2.3.2/GDINA/R/M2.R | 9 GDINA-2.3.2/GDINA/R/Mstep.R | 12 GDINA-2.3.2/GDINA/R/MultipleGroup_Estimation.R |only GDINA-2.3.2/GDINA/R/RcppExports.R | 52 + GDINA-2.3.2/GDINA/R/SingleGroup_Estimation.R |only GDINA-2.3.2/GDINA/R/autoGDINA.R | 11 GDINA-2.3.2/GDINA/R/bootSE.R | 54 - GDINA-2.3.2/GDINA/R/coef.R | 9 GDINA-2.3.2/GDINA/R/ecpe.R | 2 GDINA-2.3.2/GDINA/R/extract.R | 10 GDINA-2.3.2/GDINA/R/itemfit.R | 2 GDINA-2.3.2/GDINA/R/modelcomp.R | 11 GDINA-2.3.2/GDINA/R/monocheck.R | 2 GDINA-2.3.2/GDINA/R/personparm.GDINA.R | 29 GDINA-2.3.2/GDINA/R/plotIRF.GDINA.R | 4 GDINA-2.3.2/GDINA/R/print.GDINA.R | 20 GDINA-2.3.2/GDINA/R/score.R | 5 GDINA-2.3.2/GDINA/R/simGDINA.R | 59 - GDINA-2.3.2/GDINA/R/structuralparm.R | 150 +++- GDINA-2.3.2/GDINA/R/utils.R | 350 ++++++++++- GDINA-2.3.2/GDINA/R/zzz.R | 4 GDINA-2.3.2/GDINA/README.md | 13 GDINA-2.3.2/GDINA/build/vignette.rds |binary GDINA-2.3.2/GDINA/inst/CITATION | 4 GDINA-2.3.2/GDINA/inst/doc/GDINA.html | 4 GDINA-2.3.2/GDINA/man/DTM.Rd | 11 GDINA-2.3.2/GDINA/man/GDINA-package.Rd | 16 GDINA-2.3.2/GDINA/man/GDINA.Rd | 174 ++--- GDINA-2.3.2/GDINA/man/GMSCDM.Rd |only GDINA-2.3.2/GDINA/man/LC2LG.Rd | 4 GDINA-2.3.2/GDINA/man/Qval.Rd | 35 - GDINA-2.3.2/GDINA/man/att.structure.Rd | 6 GDINA-2.3.2/GDINA/man/autoGDINA.Rd | 11 GDINA-2.3.2/GDINA/man/designmatrix.Rd | 2 GDINA-2.3.2/GDINA/man/ecpe.Rd | 2 GDINA-2.3.2/GDINA/man/itemfit.Rd | 2 GDINA-2.3.2/GDINA/man/modelcomp.Rd | 2 GDINA-2.3.2/GDINA/man/modelfit.Rd | 2 GDINA-2.3.2/GDINA/man/plot.GDINA.Rd | 2 GDINA-2.3.2/GDINA/man/plot.Qval.Rd | 2 GDINA-2.3.2/GDINA/man/simGDINA.Rd | 4 GDINA-2.3.2/GDINA/src/Lik.cpp | 6 GDINA-2.3.2/GDINA/src/Lik2.cpp |only GDINA-2.3.2/GDINA/src/Makevars | 1 GDINA-2.3.2/GDINA/src/Makevars.win | 2 GDINA-2.3.2/GDINA/src/RcppExports.cpp | 182 ++++- GDINA-2.3.2/GDINA/src/util.cpp | 250 +++++-- GDINA-2.3.2/GDINA/tests/testthat/text-GDINAextract.R | 2 GDINA-2.3.2/GDINA/vignettes/OnlineExercises/LCDM_example.Rmd | 4 65 files changed, 1562 insertions(+), 652 deletions(-)
Title: Fit ARMA or ARIMA Using Fast MLE Algorithm
Description: Implements fast maximum likelihood algorithm for fitting ARMA time series. Uses S3 methods print, summary, fitted, residuals. Fast exact Gaussian ARMA simulation.
Author: A.I. McLeod
Maintainer: A.I. McLeod <aimcleod@uwo.ca>
Diff between FitARMA versions 1.6 dated 2013-09-27 and 1.6.1 dated 2019-01-04
DESCRIPTION | 10 +++++----- MD5 | 4 ++-- NAMESPACE | 12 ++++++++---- 3 files changed, 15 insertions(+), 11 deletions(-)
Title: Build Error Correction Models
Description: Functions for easy building of error correction models (ECM) for time series regression.
Author: Gaurav Bansal
Maintainer: Gaurav Bansal <gaurbans@gmail.com>
Diff between ecm versions 4.3.0 dated 2018-09-28 and 4.4.0 dated 2019-01-04
DESCRIPTION | 7 ++++--- MD5 | 22 ++++++++++++---------- NAMESPACE | 1 + R/cumcount.r |only R/ecm.R | 13 ++++++++++++- R/ecmave.R | 18 +++++++++++++++--- R/ecmaveback.r | 9 ++++++++- R/ecmback.r | 6 ++++++ R/lmave.R | 53 +++++++++++++++++++++++++++-------------------------- man/cumcount.Rd |only man/ecmave.Rd | 5 +++-- man/ecmaveback.Rd | 2 +- man/lmave.Rd | 10 ++++++---- 13 files changed, 95 insertions(+), 51 deletions(-)
Title: Supplementary Item Response Theory Models
Description: Supplementary functions for item response models aiming
to complement existing R packages. The functionality includes among others
multidimensional compensatory and noncompensatory IRT models
(Reckase, 2009, <doi:10.1007/978-0-387-89976-3>),
MCMC for hierarchical IRT models and testlet models
(Fox, 2010, <doi:10.1007/978-1-4419-0742-4>),
NOHARM (Fraser & McDonald, 1982, <doi:10.1207/s15327906mbr2302_9>),
Rasch copula model (Braeken, 2011, <doi:10.1007/s11336-010-9190-4>;
Schroeders, Robitzsch & Schipolowski, 2014, <doi:10.1111/jedm.12054>),
faceted and hierarchical rater models (DeCarlo, Kim & Johnson, 2011,
<doi:10.1111/j.1745-3984.2011.00143.x>),
ordinal IRT model (ISOP; Scheiblechner, 1995, <doi:10.1007/BF02301417>),
DETECT statistic (Stout, Habing, Douglas & Kim, 1996,
<doi:10.1177/014662169602000403>), local structural equation modeling
(LSEM; Hildebrandt, Luedtke, Robitzsch, Sommer & Wilhelm, 2016,
<doi:10.1080/00273171.2016.1142856>).
Author: Alexander Robitzsch [aut,cre] (<https://orcid.org/0000-0002-8226-3132>)
Maintainer: Alexander Robitzsch <robitzsch@ipn.uni-kiel.de>
Diff between sirt versions 3.0-32 dated 2018-11-22 and 3.1-80 dated 2019-01-04
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sirt-3.1-80/sirt/R/IRT.factor.scores.sirt.R | 6 sirt-3.1-80/sirt/R/IRT.factor.scores.xxirt.R | 2 sirt-3.1-80/sirt/R/IRT.irfprob.sirt.R | 31 sirt-3.1-80/sirt/R/IRT.likelihood_sirt.R | 24 sirt-3.1-80/sirt/R/IRT.mle.R | 2 sirt-3.1-80/sirt/R/IRT.modelfit.sirt.R | 2 sirt-3.1-80/sirt/R/IRT.posterior_sirt.R | 22 sirt-3.1-80/sirt/R/Probtrace_sirt.R | 2 sirt-3.1-80/sirt/R/Q3.R | 2 sirt-3.1-80/sirt/R/Q3.testlet.R | 2 sirt-3.1-80/sirt/R/R2conquest.R | 2 sirt-3.1-80/sirt/R/R2noharm-utility.R | 2 sirt-3.1-80/sirt/R/R2noharm.EAP.R | 2 sirt-3.1-80/sirt/R/R2noharm.R | 2 sirt-3.1-80/sirt/R/R2noharm.jackknife.R | 15 sirt-3.1-80/sirt/R/RcppExports.R | 130 - sirt-3.1-80/sirt/R/Rhat_sirt.R | 2 sirt-3.1-80/sirt/R/amh_plot.R | 262 -- sirt-3.1-80/sirt/R/anova_sirt.R | 37 sirt-3.1-80/sirt/R/attach.environment.sirt.R | 2 sirt-3.1-80/sirt/R/automatic.recode.R | 2 sirt-3.1-80/sirt/R/bounds_parameters.R | 2 sirt-3.1-80/sirt/R/brm.irf.R | 2 sirt-3.1-80/sirt/R/brm.sim.R | 2 sirt-3.1-80/sirt/R/btm.R | 2 sirt-3.1-80/sirt/R/btm_fit.R | 2 sirt-3.1-80/sirt/R/btm_fit_combine_tables.R | 2 sirt-3.1-80/sirt/R/btm_trim_increment.R | 2 sirt-3.1-80/sirt/R/categorize.R | 2 sirt-3.1-80/sirt/R/ccov.np.R | 173 - sirt-3.1-80/sirt/R/class.accuracy.rasch.R | 2 sirt-3.1-80/sirt/R/coef.rasch.evm.pcm.R |only sirt-3.1-80/sirt/R/conf.detect.R | 33 sirt-3.1-80/sirt/R/confint.xxirt.R | 2 sirt-3.1-80/sirt/R/create.ccov.R | 14 sirt-3.1-80/sirt/R/data.prep.R | 2 sirt-3.1-80/sirt/R/data.wide2long.R | 2 sirt-3.1-80/sirt/R/decategorize.R | 2 sirt-3.1-80/sirt/R/detect.index.R | 20 sirt-3.1-80/sirt/R/diag2.R | 2 sirt-3.1-80/sirt/R/dif.logisticregression.R | 31 sirt-3.1-80/sirt/R/dif.variance.R | 4 sirt-3.1-80/sirt/R/dimproper.R | 2 sirt-3.1-80/sirt/R/dirichlet.R | 2 sirt-3.1-80/sirt/R/eigenvalues.manymatrices.R | 2 sirt-3.1-80/sirt/R/equating.rasch.R | 141 - sirt-3.1-80/sirt/R/equating.rasch.jackknife.R |only sirt-3.1-80/sirt/R/expl.detect.R | 39 sirt-3.1-80/sirt/R/f1d.irt.R | 2 sirt-3.1-80/sirt/R/fit.adisop.R | 2 sirt-3.1-80/sirt/R/fit.gradedresponse.R | 2 sirt-3.1-80/sirt/R/fit.gradedresponse_alg.R | 2 sirt-3.1-80/sirt/R/fit.isop.R | 2 sirt-3.1-80/sirt/R/fit.logistic.R | 2 sirt-3.1-80/sirt/R/fit.logistic_alg.R | 2 sirt-3.1-80/sirt/R/fuzcluster.R | 2 sirt-3.1-80/sirt/R/fuzcluster_alg.R | 2 sirt-3.1-80/sirt/R/fuzdiscr.R | 2 sirt-3.1-80/sirt/R/ginverse_sym.R | 2 sirt-3.1-80/sirt/R/gom.em.R | 2 sirt-3.1-80/sirt/R/gom.em.alg.R | 2 sirt-3.1-80/sirt/R/gom.jml.R | 4 sirt-3.1-80/sirt/R/gom.jml_alg.R | 2 sirt-3.1-80/sirt/R/greenyang.reliability.R | 2 sirt-3.1-80/sirt/R/hard_thresholding.R | 2 sirt-3.1-80/sirt/R/invariance.alignment.R | 357 -- sirt-3.1-80/sirt/R/invariance_alignment_aligned_parameters_summary.R |only sirt-3.1-80/sirt/R/invariance_alignment_calc_corr.R |only sirt-3.1-80/sirt/R/invariance_alignment_center_parameters.R |only sirt-3.1-80/sirt/R/invariance_alignment_constraints.R |only sirt-3.1-80/sirt/R/invariance_alignment_constraints_summary_print_item_summary.R |only 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sirt-3.1-80/sirt/R/linking.robust.R | 64 sirt-3.1-80/sirt/R/linking_haberman_als.R | 39 sirt-3.1-80/sirt/R/linking_haberman_als_residual_weights.R | 4 sirt-3.1-80/sirt/R/linking_haberman_als_vcov.R | 2 sirt-3.1-80/sirt/R/linking_haberman_vcov_transformation.R | 2 sirt-3.1-80/sirt/R/linking_haebara_gradient_function_R.R |only sirt-3.1-80/sirt/R/linking_haebara_optim_function_R.R |only sirt-3.1-80/sirt/R/linking_haebara_summary_optimization.R |only sirt-3.1-80/sirt/R/linking_proc_itempars.R |only sirt-3.1-80/sirt/R/logLik_sirt.R | 2 sirt-3.1-80/sirt/R/lsdm.R | 191 - sirt-3.1-80/sirt/R/lsdm_est_logist_2pl.R |only sirt-3.1-80/sirt/R/lsdm_est_logist_quant.R |only sirt-3.1-80/sirt/R/lsdm_est_logist_rasch.R |only sirt-3.1-80/sirt/R/lsdm_extract_probquantile.R |only sirt-3.1-80/sirt/R/lsdm_irf_distance_mad.R |only sirt-3.1-80/sirt/R/lsem.MGM.stepfunctions.R | 2 sirt-3.1-80/sirt/R/lsem.estimate.R | 2 sirt-3.1-80/sirt/R/lsem.permutationTest.R | 2 sirt-3.1-80/sirt/R/lsem_fitsem.R | 2 sirt-3.1-80/sirt/R/lsem_group_moderator.R | 2 sirt-3.1-80/sirt/R/lsem_parameter_summary.R | 2 sirt-3.1-80/sirt/R/lsem_residualize.R | 2 sirt-3.1-80/sirt/R/lsem_weighted_cov.R | 2 sirt-3.1-80/sirt/R/lsem_weighted_mean.R | 2 sirt-3.1-80/sirt/R/lsem_wtdSD.R | 2 sirt-3.1-80/sirt/R/marginal.truescore.reliability.R | 29 sirt-3.1-80/sirt/R/matrix_functions.R | 2 sirt-3.1-80/sirt/R/matrixfunctions_sirt.R | 2 sirt-3.1-80/sirt/R/mcmc.2pno.R | 2 sirt-3.1-80/sirt/R/mcmc.2pno.ml.R | 2 sirt-3.1-80/sirt/R/mcmc.2pno.ml_alg.R | 2 sirt-3.1-80/sirt/R/mcmc.2pno.ml_output.R | 2 sirt-3.1-80/sirt/R/mcmc.2pno_alg.R | 2 sirt-3.1-80/sirt/R/mcmc.2pnoh.R | 2 sirt-3.1-80/sirt/R/mcmc.2pnoh_alg.R | 2 sirt-3.1-80/sirt/R/mcmc.3pno.testlet.R | 2 sirt-3.1-80/sirt/R/mcmc.3pno.testlet_alg.R | 2 sirt-3.1-80/sirt/R/mcmc.3pno.testlet_output.R | 2 sirt-3.1-80/sirt/R/mcmc.aux.R | 2 sirt-3.1-80/sirt/R/mcmc.list.descriptives.R | 2 sirt-3.1-80/sirt/R/mcmc_3pno_testlet_draw_itempars.R | 2 sirt-3.1-80/sirt/R/mcmc_Rhat.R | 2 sirt-3.1-80/sirt/R/mcmc_WaldTest.R | 2 sirt-3.1-80/sirt/R/mcmc_as_formula.R | 2 sirt-3.1-80/sirt/R/mcmc_coef.R | 2 sirt-3.1-80/sirt/R/mcmc_confint.R | 2 sirt-3.1-80/sirt/R/mcmc_derivedPars.R | 2 sirt-3.1-80/sirt/R/mcmc_extract_samples_first_chain.R | 2 sirt-3.1-80/sirt/R/mcmc_plot.R | 2 sirt-3.1-80/sirt/R/mcmc_rename_define_symbols.R | 2 sirt-3.1-80/sirt/R/mcmc_rename_helper.R | 2 sirt-3.1-80/sirt/R/mcmc_rename_parameter_names.R | 2 sirt-3.1-80/sirt/R/mcmc_rename_undo_parameter_names.R | 2 sirt-3.1-80/sirt/R/mcmc_summary.R | 2 sirt-3.1-80/sirt/R/mcmc_summary_print_information_criteria.R | 2 sirt-3.1-80/sirt/R/mcmc_vcov.R | 2 sirt-3.1-80/sirt/R/mcmclist2coda.R | 14 sirt-3.1-80/sirt/R/md.pattern.sirt.R | 18 sirt-3.1-80/sirt/R/mirt.IRT.functions.R | 2 sirt-3.1-80/sirt/R/mirt.model.vars.R | 2 sirt-3.1-80/sirt/R/mirt.specify.partable.R | 2 sirt-3.1-80/sirt/R/mirt.wrapper.calc.counts.R | 2 sirt-3.1-80/sirt/R/mirt.wrapper.coef.R | 2 sirt-3.1-80/sirt/R/mirt.wrapper.fscores.R | 2 sirt-3.1-80/sirt/R/mirt.wrapper.itemplot.R | 2 sirt-3.1-80/sirt/R/mirt.wrapper.posterior.R | 2 sirt-3.1-80/sirt/R/mirt_prodterms.R | 2 sirt-3.1-80/sirt/R/mle.pcm.group.R | 78 sirt-3.1-80/sirt/R/mle.reliability.R | 2 sirt-3.1-80/sirt/R/modelfit.cor.R | 2 sirt-3.1-80/sirt/R/modelfit.cor.poly.R | 2 sirt-3.1-80/sirt/R/modelfit.sirt.R | 2 sirt-3.1-80/sirt/R/monoreg.colwise.R |only sirt-3.1-80/sirt/R/monoreg.rowwise.R | 18 sirt-3.1-80/sirt/R/nedelsky.irf.R | 2 sirt-3.1-80/sirt/R/nedelsky.latresp.R | 14 sirt-3.1-80/sirt/R/nedelsky.sim.R | 2 sirt-3.1-80/sirt/R/noharm.sirt.R | 299 +- sirt-3.1-80/sirt/R/noharm.sirt.est.aux.R | 37 sirt-3.1-80/sirt/R/noharm_sirt_compute_chi_square_statistics.R |only sirt-3.1-80/sirt/R/noharm_sirt_compute_final_constants.R |only sirt-3.1-80/sirt/R/noharm_sirt_efa_rotated_solution.R |only sirt-3.1-80/sirt/R/noharm_sirt_est_residuals.R |only sirt-3.1-80/sirt/R/noharm_sirt_number_estimated_parameters.R |only sirt-3.1-80/sirt/R/noharm_sirt_outer_coefs.R |only sirt-3.1-80/sirt/R/noharm_sirt_preproc.R |only sirt-3.1-80/sirt/R/normal2.cw.R | 40 sirt-3.1-80/sirt/R/np.dich.R | 2 sirt-3.1-80/sirt/R/nr.numdiff.R | 12 sirt-3.1-80/sirt/R/package_version_date.R | 2 sirt-3.1-80/sirt/R/parmsummary_extend.R | 2 sirt-3.1-80/sirt/R/pbivnorm2.R | 2 sirt-3.1-80/sirt/R/pcm.conversion.R | 35 sirt-3.1-80/sirt/R/pcm.fit.R | 2 sirt-3.1-80/sirt/R/personfit.R | 2 sirt-3.1-80/sirt/R/personfit.stat.R | 2 sirt-3.1-80/sirt/R/pgenlogis.R | 2 sirt-3.1-80/sirt/R/plausible.values.raschtype.R | 2 sirt-3.1-80/sirt/R/plot.isop.R | 2 sirt-3.1-80/sirt/R/plot.linking.robust.R |only sirt-3.1-80/sirt/R/plot.lsdm.R |only sirt-3.1-80/sirt/R/plot.lsem.R | 2 sirt-3.1-80/sirt/R/plot.lsem.permutationTest.R | 2 sirt-3.1-80/sirt/R/plot.mcmc.sirt.R | 66 sirt-3.1-80/sirt/R/plot.rasch.mml.R | 2 sirt-3.1-80/sirt/R/plot.rm.sdt.R | 2 sirt-3.1-80/sirt/R/polychoric2.R | 20 sirt-3.1-80/sirt/R/pow.R | 2 sirt-3.1-80/sirt/R/print.xxirt.R | 15 sirt-3.1-80/sirt/R/prior_extract_density.R | 2 sirt-3.1-80/sirt/R/prior_model_pars_CleanString.R | 2 sirt-3.1-80/sirt/R/prior_model_parse.R | 2 sirt-3.1-80/sirt/R/prmse.subscores.R | 2 sirt-3.1-80/sirt/R/prob.guttman.R | 2 sirt-3.1-80/sirt/R/prob_genlogis_4pl.R | 5 sirt-3.1-80/sirt/R/qmc.nodes.R | 10 sirt-3.1-80/sirt/R/rasch.conquest.R | 2 sirt-3.1-80/sirt/R/rasch.copula.R | 215 - sirt-3.1-80/sirt/R/rasch.copula2.R | 9 sirt-3.1-80/sirt/R/rasch.copula2_aux.R | 13 sirt-3.1-80/sirt/R/rasch.copula3.R | 9 sirt-3.1-80/sirt/R/rasch.copula3.covariance.R | 2 sirt-3.1-80/sirt/R/rasch.copula3_aux.R | 2 sirt-3.1-80/sirt/R/rasch.evm.pcm.R | 183 - sirt-3.1-80/sirt/R/rasch.jml.R | 2 sirt-3.1-80/sirt/R/rasch.jml.biascorr.R | 2 sirt-3.1-80/sirt/R/rasch.mirtlc.R | 2 sirt-3.1-80/sirt/R/rasch.mirtlc_aux.R | 2 sirt-3.1-80/sirt/R/rasch.mml.R | 2 sirt-3.1-80/sirt/R/rasch.mml.npirt.R | 2 sirt-3.1-80/sirt/R/rasch.mml.ramsay.R | 2 sirt-3.1-80/sirt/R/rasch.mml.raschtype.R | 2 sirt-3.1-80/sirt/R/rasch.mml2.R | 2 sirt-3.1-80/sirt/R/rasch.mml2.missing1.R | 2 sirt-3.1-80/sirt/R/rasch.pairwise.R | 161 - sirt-3.1-80/sirt/R/rasch.pairwise.itemcluster.R | 95 sirt-3.1-80/sirt/R/rasch.pml.R | 2 sirt-3.1-80/sirt/R/rasch.pml2.R | 2 sirt-3.1-80/sirt/R/rasch.pml2_aux.R | 2 sirt-3.1-80/sirt/R/rasch.pml3.R | 6 sirt-3.1-80/sirt/R/rasch.pml3_aux.R | 2 sirt-3.1-80/sirt/R/rasch.pml_aux.R | 2 sirt-3.1-80/sirt/R/rasch.prox.R | 2 sirt-3.1-80/sirt/R/rasch.va.R | 13 sirt-3.1-80/sirt/R/rasch_evm_pcm_dif.R |only sirt-3.1-80/sirt/R/rasch_jml_centeritems.R | 2 sirt-3.1-80/sirt/R/rasch_jml_centerpersons.R | 2 sirt-3.1-80/sirt/R/rasch_jml_emp_discrim.R | 2 sirt-3.1-80/sirt/R/rasch_jml_itemfit.R | 2 sirt-3.1-80/sirt/R/rasch_jml_person_parameters_summary.R | 2 sirt-3.1-80/sirt/R/rasch_jml_update_b.R | 2 sirt-3.1-80/sirt/R/rasch_mml2_calc_prob.R | 2 sirt-3.1-80/sirt/R/rasch_mml2_difference_quotient.R | 4 sirt-3.1-80/sirt/R/rasch_mml2_modify_list_element.R | 2 sirt-3.1-80/sirt/R/rasch_mml2_mstep_calc_likelihood.R | 2 sirt-3.1-80/sirt/R/read.fwf2.R | 2 sirt-3.1-80/sirt/R/reliability.nonlinear.sem.R | 2 sirt-3.1-80/sirt/R/rm.facets.R | 5 sirt-3.1-80/sirt/R/rm.sdt.R | 2 sirt-3.1-80/sirt/R/rm_calclike.R | 2 sirt-3.1-80/sirt/R/rm_center_vector.R | 2 sirt-3.1-80/sirt/R/rm_determine_fixed_tau_parameters.R | 2 sirt-3.1-80/sirt/R/rm_eap_reliability.R | 2 sirt-3.1-80/sirt/R/rm_facets_calc_loglikelihood.R | 2 sirt-3.1-80/sirt/R/rm_facets_calcprobs.R | 2 sirt-3.1-80/sirt/R/rm_facets_center_value.R | 2 sirt-3.1-80/sirt/R/rm_facets_center_value_aggregate.R | 2 sirt-3.1-80/sirt/R/rm_facets_est_a_item.R | 2 sirt-3.1-80/sirt/R/rm_facets_est_a_rater.R | 2 sirt-3.1-80/sirt/R/rm_facets_est_b_rater.R | 2 sirt-3.1-80/sirt/R/rm_facets_est_tau_item.R | 2 sirt-3.1-80/sirt/R/rm_facets_ic.R | 2 sirt-3.1-80/sirt/R/rm_facets_itempar_expanded.R | 2 sirt-3.1-80/sirt/R/rm_facets_pem_acceleration.R | 2 sirt-3.1-80/sirt/R/rm_facets_pem_inits.R | 2 sirt-3.1-80/sirt/R/rm_facets_postproc_person.R | 2 sirt-3.1-80/sirt/R/rm_facets_postproc_rater_parameters.R | 2 sirt-3.1-80/sirt/R/rm_facets_pp_mle.R |only sirt-3.1-80/sirt/R/rm_facets_pp_mle_calc_ll.R |only sirt-3.1-80/sirt/R/rm_facets_pp_mle_calc_ll_theta.R |only sirt-3.1-80/sirt/R/rm_facets_pp_mle_calc_pcm.R |only sirt-3.1-80/sirt/R/rm_facets_print_progress.R | 2 sirt-3.1-80/sirt/R/rm_facets_print_progress_deviance.R | 2 sirt-3.1-80/sirt/R/rm_facets_print_progress_parameter.R | 2 sirt-3.1-80/sirt/R/rm_facets_print_progress_trait_distribution.R | 2 sirt-3.1-80/sirt/R/rm_facets_string_part_extract.R | 2 sirt-3.1-80/sirt/R/rm_grouped_expected_likelihood.R | 2 sirt-3.1-80/sirt/R/rm_ic_criteria.R | 2 sirt-3.1-80/sirt/R/rm_numdiff_discrete_differences.R | 2 sirt-3.1-80/sirt/R/rm_numdiff_index.R | 2 sirt-3.1-80/sirt/R/rm_numdiff_trim_increment.R | 9 sirt-3.1-80/sirt/R/rm_pcm_calcprobs.R |only sirt-3.1-80/sirt/R/rm_posterior.R | 2 sirt-3.1-80/sirt/R/rm_proc_create_pseudoraters.R | 2 sirt-3.1-80/sirt/R/rm_proc_data.R | 2 sirt-3.1-80/sirt/R/rm_proc_fixed_values_reference_rater.R | 2 sirt-3.1-80/sirt/R/rm_sdt_calc_expected_likelihood_item.R | 2 sirt-3.1-80/sirt/R/rm_sdt_calc_gradient_likelihood_item.R | 2 sirt-3.1-80/sirt/R/rm_sdt_calc_gradient_likelihood_item_llgrad.R | 2 sirt-3.1-80/sirt/R/rm_sdt_calc_gradient_likelihood_item_llgrad2.R | 2 sirt-3.1-80/sirt/R/rm_sdt_calc_probs_gpcm.R | 4 sirt-3.1-80/sirt/R/rm_sdt_calc_probs_gpcm_rcpp.R | 2 sirt-3.1-80/sirt/R/rm_sdt_calc_probs_grm_item_rcpp.R | 2 sirt-3.1-80/sirt/R/rm_sdt_calc_probs_grm_rcpp.R | 2 sirt-3.1-80/sirt/R/rm_sdt_create_parm_index_modify_elements.R | 2 sirt-3.1-80/sirt/R/rm_sdt_create_parm_index_rater.R | 2 sirt-3.1-80/sirt/R/rm_sdt_create_partable.R | 2 sirt-3.1-80/sirt/R/rm_sdt_create_partable_define_pargroups.R | 2 sirt-3.1-80/sirt/R/rm_sdt_create_partable_include_fixed_item_category_parameters.R | 2 sirt-3.1-80/sirt/R/rm_sdt_create_partable_include_index.R | 2 sirt-3.1-80/sirt/R/rm_sdt_create_partable_include_priors.R | 2 sirt-3.1-80/sirt/R/rm_sdt_create_partable_pargroup_indices.R | 2 sirt-3.1-80/sirt/R/rm_sdt_evaluate_prior.R | 2 sirt-3.1-80/sirt/R/rm_sdt_evaluate_prior_derivative.R | 2 sirt-3.1-80/sirt/R/rm_sdt_extract_par_from_partable.R | 2 sirt-3.1-80/sirt/R/rm_sdt_extract_par_from_partable_add_increment.R | 2 sirt-3.1-80/sirt/R/rm_sdt_fill_init_partable.R | 2 sirt-3.1-80/sirt/R/rm_sdt_fill_init_partables.R | 2 sirt-3.1-80/sirt/R/rm_sdt_fill_par_to_partable.R | 2 sirt-3.1-80/sirt/R/rm_sdt_mstep_include_probs_args.R | 2 sirt-3.1-80/sirt/R/rm_sdt_mstep_item_function_gradient.R | 2 sirt-3.1-80/sirt/R/rm_sdt_mstep_item_function_value.R | 2 sirt-3.1-80/sirt/R/rm_sdt_mstep_numdiff_diffindex.R | 2 sirt-3.1-80/sirt/R/rm_sdt_mstep_rater_function_gradient.R | 2 sirt-3.1-80/sirt/R/rm_sdt_mstep_rater_function_value.R | 2 sirt-3.1-80/sirt/R/rm_sdt_mstep_type_function_gradient.R | 2 sirt-3.1-80/sirt/R/rm_sdt_mstep_type_function_value.R | 2 sirt-3.1-80/sirt/R/rm_sdt_pem_inits.R | 2 sirt-3.1-80/sirt/R/rm_sdt_postproc_ic.R | 2 sirt-3.1-80/sirt/R/rm_sdt_prepare_diffindex.R | 2 sirt-3.1-80/sirt/R/rm_sdt_print_progress.R | 2 sirt-3.1-80/sirt/R/rm_smooth_distribution.R | 2 sirt-3.1-80/sirt/R/rm_squeeze.R | 2 sirt-3.1-80/sirt/R/rm_summary_information_criteria.R | 2 sirt-3.1-80/sirt/R/rm_summary_information_criteria_print_one_criterium.R | 2 sirt-3.1-80/sirt/R/rm_summary_trait_distribution.R | 2 sirt-3.1-80/sirt/R/rm_trim_increments_mstep.R | 2 sirt-3.1-80/sirt/R/sia.sirt.R | 107 sirt-3.1-80/sirt/R/sia_sirt_remove_transitive.R |only sirt-3.1-80/sirt/R/sim.rasch.dep.R | 23 sirt-3.1-80/sirt/R/sim.raschtype.R | 23 sirt-3.1-80/sirt/R/sirt_abs_smooth.R |only sirt-3.1-80/sirt/R/sirt_antifisherz.R | 2 sirt-3.1-80/sirt/R/sirt_attach_list_elements.R | 2 sirt-3.1-80/sirt/R/sirt_colMaxs.R | 9 sirt-3.1-80/sirt/R/sirt_colMeans.R |only sirt-3.1-80/sirt/R/sirt_colMedians.R |only sirt-3.1-80/sirt/R/sirt_colMins.R |only sirt-3.1-80/sirt/R/sirt_colSDs.R |only sirt-3.1-80/sirt/R/sirt_csink.R | 2 sirt-3.1-80/sirt/R/sirt_dnorm_discrete.R | 2 sirt-3.1-80/sirt/R/sirt_eigenvalues.R |only sirt-3.1-80/sirt/R/sirt_fisherz.R | 2 sirt-3.1-80/sirt/R/sirt_format_numb.R |only sirt-3.1-80/sirt/R/sirt_matrix2.R | 2 sirt-3.1-80/sirt/R/sirt_matrix_names.R |only sirt-3.1-80/sirt/R/sirt_moving_average.R |only sirt-3.1-80/sirt/R/sirt_optimizer.R | 17 sirt-3.1-80/sirt/R/sirt_osink.R | 2 sirt-3.1-80/sirt/R/sirt_pem_adjust_dimension.R | 2 sirt-3.1-80/sirt/R/sirt_pem_algorithm_compute_Pnew.R | 2 sirt-3.1-80/sirt/R/sirt_pem_algorithm_compute_t.R | 2 sirt-3.1-80/sirt/R/sirt_pem_collect_parameters.R | 2 sirt-3.1-80/sirt/R/sirt_pem_create_parameter_index.R | 2 sirt-3.1-80/sirt/R/sirt_pem_extract_dimension.R | 2 sirt-3.1-80/sirt/R/sirt_pem_extract_parameters.R | 2 sirt-3.1-80/sirt/R/sirt_pem_include_ll_args.R | 2 sirt-3.1-80/sirt/R/sirt_pem_parameter_sequence_initial_iterations.R | 2 sirt-3.1-80/sirt/R/sirt_permutations.R |only sirt-3.1-80/sirt/R/sirt_print_helper.R |only sirt-3.1-80/sirt/R/sirt_progress_cat.R |only sirt-3.1-80/sirt/R/sirt_rbind_fill.R | 2 sirt-3.1-80/sirt/R/sirt_rmvnorm.R | 2 sirt-3.1-80/sirt/R/sirt_round_vector.R | 2 sirt-3.1-80/sirt/R/sirt_rsquared.R |only sirt-3.1-80/sirt/R/sirt_sign_space.R | 2 sirt-3.1-80/sirt/R/sirt_sum.R |only sirt-3.1-80/sirt/R/sirt_sum_norm.R |only sirt-3.1-80/sirt/R/sirt_summary_cat_label_equal_value.R | 2 sirt-3.1-80/sirt/R/sirt_summary_label_equal_value.R | 2 sirt-3.1-80/sirt/R/sirt_summary_print_call.R | 2 sirt-3.1-80/sirt/R/sirt_summary_print_computation_time.R | 2 sirt-3.1-80/sirt/R/sirt_summary_print_computation_time_s1.R | 2 sirt-3.1-80/sirt/R/sirt_summary_print_display.R |only sirt-3.1-80/sirt/R/sirt_summary_print_objects.R | 21 sirt-3.1-80/sirt/R/sirt_summary_print_package.R | 2 sirt-3.1-80/sirt/R/sirt_summary_print_package_rsession.R | 4 sirt-3.1-80/sirt/R/sirt_summary_print_packages.R | 2 sirt-3.1-80/sirt/R/sirt_summary_print_rsession.R | 2 sirt-3.1-80/sirt/R/sirt_summary_print_vector_summary.R |only sirt-3.1-80/sirt/R/sirt_vector_with_names.R | 6 sirt-3.1-80/sirt/R/sirtcat.R | 2 sirt-3.1-80/sirt/R/smirt.R | 2 sirt-3.1-80/sirt/R/smirt_alg_comp.R | 2 sirt-3.1-80/sirt/R/smirt_alg_noncomp.R | 2 sirt-3.1-80/sirt/R/smirt_alg_partcomp.R | 2 sirt-3.1-80/sirt/R/smirt_postproc.R | 2 sirt-3.1-80/sirt/R/smirt_preproc.R | 2 sirt-3.1-80/sirt/R/smirt_squeeze.R | 2 sirt-3.1-80/sirt/R/soft_thresholding.R | 2 sirt-3.1-80/sirt/R/stratified.cronbach.alpha.R | 2 sirt-3.1-80/sirt/R/summary.R2noharm.R | 2 sirt-3.1-80/sirt/R/summary.R2noharm.jackknife.R | 2 sirt-3.1-80/sirt/R/summary.btm.R | 2 sirt-3.1-80/sirt/R/summary.conf.detect.R | 28 sirt-3.1-80/sirt/R/summary.fuzcluster.R | 2 sirt-3.1-80/sirt/R/summary.gom.em.R | 2 sirt-3.1-80/sirt/R/summary.invariance.alignment.R | 115 sirt-3.1-80/sirt/R/summary.invariance_alignment_constraints.R |only sirt-3.1-80/sirt/R/summary.isop.R | 2 sirt-3.1-80/sirt/R/summary.isop.test.R | 5 sirt-3.1-80/sirt/R/summary.latent.regression.R | 2 sirt-3.1-80/sirt/R/summary.linking.haberman.R | 54 sirt-3.1-80/sirt/R/summary.linking.haebara.R |only sirt-3.1-80/sirt/R/summary.linking.robust.R |only sirt-3.1-80/sirt/R/summary.lsdm.R | 89 sirt-3.1-80/sirt/R/summary.lsem.R | 2 sirt-3.1-80/sirt/R/summary.lsem.permutationTest.R | 22 sirt-3.1-80/sirt/R/summary.mcmc.sirt.R | 11 sirt-3.1-80/sirt/R/summary.modelfit.sirt.R | 2 sirt-3.1-80/sirt/R/summary.noharm.sirt.R | 117 sirt-3.1-80/sirt/R/summary.rasch.copula2.R |only sirt-3.1-80/sirt/R/summary.rasch.copula3.R |only sirt-3.1-80/sirt/R/summary.rasch.evm.pcm.R | 52 sirt-3.1-80/sirt/R/summary.rasch.jml.R | 2 sirt-3.1-80/sirt/R/summary.rasch.mirtlc.R | 2 sirt-3.1-80/sirt/R/summary.rasch.mml2.R | 2 sirt-3.1-80/sirt/R/summary.rasch.pairwise.R |only sirt-3.1-80/sirt/R/summary.rasch.pml.R | 6 sirt-3.1-80/sirt/R/summary.rm.facets.R | 9 sirt-3.1-80/sirt/R/summary.rm.sdt.R | 8 sirt-3.1-80/sirt/R/summary.smirt.R | 2 sirt-3.1-80/sirt/R/summary.xxirt.R | 2 sirt-3.1-80/sirt/R/summary_round_helper.R | 2 sirt-3.1-80/sirt/R/tam2mirt.R | 2 sirt-3.1-80/sirt/R/tam2mirt_fix.R | 2 sirt-3.1-80/sirt/R/tam2mirt_freed.R | 2 sirt-3.1-80/sirt/R/testlet.marginalized.R | 18 sirt-3.1-80/sirt/R/testlet.yen.q3.R | 2 sirt-3.1-80/sirt/R/tetrachoric2.R | 2 sirt-3.1-80/sirt/R/tracemat.R | 4 sirt-3.1-80/sirt/R/truescore.irt.R | 2 sirt-3.1-80/sirt/R/unidim.csn.R | 20 sirt-3.1-80/sirt/R/vcov.rasch.evm.pcm.R |only sirt-3.1-80/sirt/R/weighted_colMeans.R | 2 sirt-3.1-80/sirt/R/weighted_colSums.R | 2 sirt-3.1-80/sirt/R/weighted_rowMeans.R | 2 sirt-3.1-80/sirt/R/weighted_rowSums.R | 2 sirt-3.1-80/sirt/R/weighted_stats_extend_wgt.R | 2 sirt-3.1-80/sirt/R/wle.rasch.R | 2 sirt-3.1-80/sirt/R/wle.rasch.jackknife.R | 2 sirt-3.1-80/sirt/R/write.format2.R | 2 sirt-3.1-80/sirt/R/write.fwf2.R | 2 sirt-3.1-80/sirt/R/xxirt.R | 56 sirt-3.1-80/sirt/R/xxirt_EAP.R | 2 sirt-3.1-80/sirt/R/xxirt_IRT.se.R | 2 sirt-3.1-80/sirt/R/xxirt_ThetaDistribution_extract_freeParameters.R | 2 sirt-3.1-80/sirt/R/xxirt_coef.R | 2 sirt-3.1-80/sirt/R/xxirt_compute_itemprobs.R | 2 sirt-3.1-80/sirt/R/xxirt_compute_likelihood.R | 2 sirt-3.1-80/sirt/R/xxirt_compute_posterior.R | 2 sirt-3.1-80/sirt/R/xxirt_compute_priorDistribution.R | 2 sirt-3.1-80/sirt/R/xxirt_createDiscItem.R | 2 sirt-3.1-80/sirt/R/xxirt_createItemList.R | 2 sirt-3.1-80/sirt/R/xxirt_createParTable.R | 2 sirt-3.1-80/sirt/R/xxirt_createThetaDistribution.R | 2 sirt-3.1-80/sirt/R/xxirt_data_proc.R | 2 sirt-3.1-80/sirt/R/xxirt_hessian.R | 2 sirt-3.1-80/sirt/R/xxirt_ic.R | 2 sirt-3.1-80/sirt/R/xxirt_modifyParTable.R | 2 sirt-3.1-80/sirt/R/xxirt_mstep_ThetaParameters.R | 2 sirt-3.1-80/sirt/R/xxirt_mstep_itemParameters.R | 2 sirt-3.1-80/sirt/R/xxirt_mstep_itemParameters_evalPrior.R | 2 sirt-3.1-80/sirt/R/xxirt_parTheta_extract_freeParameters.R | 2 sirt-3.1-80/sirt/R/xxirt_partable_extract_freeParameters.R | 2 sirt-3.1-80/sirt/R/xxirt_partable_include_freeParameters.R | 2 sirt-3.1-80/sirt/R/xxirt_postproc_parameters.R | 2 sirt-3.1-80/sirt/R/xxirt_prepare_response_data.R | 2 sirt-3.1-80/sirt/R/xxirt_proc_ParTable.R | 2 sirt-3.1-80/sirt/R/xxirt_vcov.R | 2 sirt-3.1-80/sirt/R/yen.q3.R | 2 sirt-3.1-80/sirt/R/zzz.R | 11 sirt-3.1-80/sirt/build/partial.rdb |binary sirt-3.1-80/sirt/inst/NEWS | 30 sirt-3.1-80/sirt/inst/include |only sirt-3.1-80/sirt/man/IRT.mle.Rd | 12 sirt-3.1-80/sirt/man/Q3.Rd | 17 sirt-3.1-80/sirt/man/Q3.testlet.Rd | 19 sirt-3.1-80/sirt/man/R2conquest.Rd | 16 sirt-3.1-80/sirt/man/R2noharm.EAP.Rd | 14 sirt-3.1-80/sirt/man/R2noharm.Rd | 15 sirt-3.1-80/sirt/man/R2noharm.jackknife.Rd | 15 sirt-3.1-80/sirt/man/automatic.recode.Rd | 10 sirt-3.1-80/sirt/man/brm.sim.Rd | 10 sirt-3.1-80/sirt/man/btm.Rd | 12 sirt-3.1-80/sirt/man/categorize.Rd | 10 sirt-3.1-80/sirt/man/ccov.np.Rd | 12 sirt-3.1-80/sirt/man/class.accuracy.rasch.Rd | 10 sirt-3.1-80/sirt/man/conf.detect.Rd | 10 sirt-3.1-80/sirt/man/data.activity.itempars.Rd | 4 sirt-3.1-80/sirt/man/data.befki.Rd | 2 sirt-3.1-80/sirt/man/data.big5.Rd | 4 sirt-3.1-80/sirt/man/data.bs.Rd | 4 sirt-3.1-80/sirt/man/data.eid.Rd | 4 sirt-3.1-80/sirt/man/data.ess2005.Rd | 4 sirt-3.1-80/sirt/man/data.g308.Rd | 4 sirt-3.1-80/sirt/man/data.inv4gr.Rd | 4 sirt-3.1-80/sirt/man/data.liking.science.Rd | 4 sirt-3.1-80/sirt/man/data.long.Rd | 4 sirt-3.1-80/sirt/man/data.lsem.Rd | 4 sirt-3.1-80/sirt/man/data.math.Rd | 4 sirt-3.1-80/sirt/man/data.mcdonald.Rd | 4 sirt-3.1-80/sirt/man/data.mixed1.Rd | 4 sirt-3.1-80/sirt/man/data.ml.Rd | 4 sirt-3.1-80/sirt/man/data.noharm.Rd | 4 sirt-3.1-80/sirt/man/data.pars1.rasch.Rd | 4 sirt-3.1-80/sirt/man/data.pirlsmissing.Rd | 4 sirt-3.1-80/sirt/man/data.pisaMath.Rd | 4 sirt-3.1-80/sirt/man/data.pisaPars.Rd | 4 sirt-3.1-80/sirt/man/data.pisaRead.Rd | 4 sirt-3.1-80/sirt/man/data.pw01.Rd | 4 sirt-3.1-80/sirt/man/data.ratings1.Rd | 4 sirt-3.1-80/sirt/man/data.raw1.Rd | 4 sirt-3.1-80/sirt/man/data.read.Rd | 4 sirt-3.1-80/sirt/man/data.reck.Rd | 4 sirt-3.1-80/sirt/man/data.si.Rd | 4 sirt-3.1-80/sirt/man/data.timss.Rd | 4 sirt-3.1-80/sirt/man/data.timss07.G8.RUS.Rd | 4 sirt-3.1-80/sirt/man/data.wide2long.Rd | 10 sirt-3.1-80/sirt/man/detect.index.Rd | 11 sirt-3.1-80/sirt/man/dif.logistic.regression.Rd | 12 sirt-3.1-80/sirt/man/dif.strata.variance.Rd | 12 sirt-3.1-80/sirt/man/dif.variance.Rd | 13 sirt-3.1-80/sirt/man/dirichlet.mle.Rd | 11 sirt-3.1-80/sirt/man/dirichlet.simul.Rd | 10 sirt-3.1-80/sirt/man/eigenvalues.manymatrices.Rd | 11 sirt-3.1-80/sirt/man/equating.rasch.Rd | 15 sirt-3.1-80/sirt/man/equating.rasch.jackknife.Rd | 15 sirt-3.1-80/sirt/man/expl.detect.Rd | 12 sirt-3.1-80/sirt/man/f1d.irt.Rd | 13 sirt-3.1-80/sirt/man/fit.isop.Rd | 15 sirt-3.1-80/sirt/man/fuzcluster.Rd | 16 sirt-3.1-80/sirt/man/fuzdiscr.Rd | 15 sirt-3.1-80/sirt/man/gom.em.Rd | 17 sirt-3.1-80/sirt/man/gom.jml.Rd | 13 sirt-3.1-80/sirt/man/greenyang.reliability.Rd | 12 sirt-3.1-80/sirt/man/invariance.alignment.Rd | 219 - sirt-3.1-80/sirt/man/isop.Rd | 19 sirt-3.1-80/sirt/man/isop.scoring.Rd | 14 sirt-3.1-80/sirt/man/isop.test.Rd | 17 sirt-3.1-80/sirt/man/latent.regression.em.raschtype.Rd | 19 sirt-3.1-80/sirt/man/lavaan2mirt.Rd | 15 sirt-3.1-80/sirt/man/lc.2raters.Rd | 17 sirt-3.1-80/sirt/man/likelihood.adjustment.Rd | 12 sirt-3.1-80/sirt/man/linking.haberman.Rd | 70 sirt-3.1-80/sirt/man/linking.haebara.Rd |only sirt-3.1-80/sirt/man/linking.robust.Rd | 19 sirt-3.1-80/sirt/man/lsdm.Rd | 307 +- sirt-3.1-80/sirt/man/lsem.estimate.Rd | 4 sirt-3.1-80/sirt/man/lsem.permutationTest.Rd | 11 sirt-3.1-80/sirt/man/marginal.truescore.reliability.Rd | 13 sirt-3.1-80/sirt/man/matrixfunctions.sirt.Rd | 4 sirt-3.1-80/sirt/man/mcmc.2pno.Rd | 13 sirt-3.1-80/sirt/man/mcmc.2pno.ml.Rd | 17 sirt-3.1-80/sirt/man/mcmc.2pnoh.Rd | 13 sirt-3.1-80/sirt/man/mcmc.3pno.testlet.Rd | 17 sirt-3.1-80/sirt/man/mcmc.list.descriptives.Rd | 11 sirt-3.1-80/sirt/man/mcmc_Rhat.Rd | 2 sirt-3.1-80/sirt/man/mcmc_coef.Rd | 11 sirt-3.1-80/sirt/man/mcmclist2coda.Rd | 13 sirt-3.1-80/sirt/man/md.pattern.sirt.Rd | 12 sirt-3.1-80/sirt/man/mirt.specify.partable.Rd | 4 sirt-3.1-80/sirt/man/mirt.wrapper.Rd | 12 sirt-3.1-80/sirt/man/mle.pcm.group.Rd | 15 sirt-3.1-80/sirt/man/modelfit.sirt.Rd | 13 sirt-3.1-80/sirt/man/monoreg.rowwise.Rd | 6 sirt-3.1-80/sirt/man/nedelsky.sim.Rd | 13 sirt-3.1-80/sirt/man/noharm.sirt.Rd | 16 sirt-3.1-80/sirt/man/np.dich.Rd | 13 sirt-3.1-80/sirt/man/parmsummary_extend.Rd | 2 sirt-3.1-80/sirt/man/pbivnorm2.Rd | 13 sirt-3.1-80/sirt/man/pcm.conversion.Rd | 13 sirt-3.1-80/sirt/man/pcm.fit.Rd | 6 sirt-3.1-80/sirt/man/person.parameter.rasch.copula.Rd | 15 sirt-3.1-80/sirt/man/personfit.stat.Rd | 13 sirt-3.1-80/sirt/man/pgenlogis.Rd | 15 sirt-3.1-80/sirt/man/plausible.value.imputation.raschtype.Rd | 19 sirt-3.1-80/sirt/man/plot.mcmc.sirt.Rd | 13 sirt-3.1-80/sirt/man/plot.np.dich.Rd | 15 sirt-3.1-80/sirt/man/polychoric2.Rd | 14 sirt-3.1-80/sirt/man/prior_model_parse.Rd | 11 sirt-3.1-80/sirt/man/prmse.subscores.scales.Rd | 13 sirt-3.1-80/sirt/man/prob.guttman.Rd | 15 sirt-3.1-80/sirt/man/qmc.nodes.Rd | 13 sirt-3.1-80/sirt/man/rasch.copula.Rd | 64 sirt-3.1-80/sirt/man/rasch.evm.pcm.Rd | 27 sirt-3.1-80/sirt/man/rasch.jml.Rd | 15 sirt-3.1-80/sirt/man/rasch.jml.biascorr.Rd | 13 sirt-3.1-80/sirt/man/rasch.jml.jackknife1.Rd | 13 sirt-3.1-80/sirt/man/rasch.mirtlc.Rd | 15 sirt-3.1-80/sirt/man/rasch.mml.Rd | 16 sirt-3.1-80/sirt/man/rasch.pairwise.Rd | 21 sirt-3.1-80/sirt/man/rasch.pairwise.itemcluster.Rd | 30 sirt-3.1-80/sirt/man/rasch.pml3.Rd | 17 sirt-3.1-80/sirt/man/rasch.prox.Rd | 13 sirt-3.1-80/sirt/man/rasch.va.Rd | 13 sirt-3.1-80/sirt/man/reliability.nonlinearSEM.Rd | 13 sirt-3.1-80/sirt/man/rinvgamma2.Rd | 11 sirt-3.1-80/sirt/man/rm.facets.Rd | 17 sirt-3.1-80/sirt/man/rm.sdt.Rd | 17 sirt-3.1-80/sirt/man/sia.sirt.Rd | 14 sirt-3.1-80/sirt/man/sim.qm.ramsay.Rd | 13 sirt-3.1-80/sirt/man/sim.rasch.dep.Rd | 13 sirt-3.1-80/sirt/man/sim.raschtype.Rd | 10 sirt-3.1-80/sirt/man/sirt-defunct.Rd | 2 sirt-3.1-80/sirt/man/sirt-package.Rd | 17 sirt-3.1-80/sirt/man/sirt-utilities.Rd | 102 sirt-3.1-80/sirt/man/sirt_eigenvalues.Rd |only sirt-3.1-80/sirt/man/smirt.Rd | 15 sirt-3.1-80/sirt/man/stratified.cronbach.alpha.Rd | 13 sirt-3.1-80/sirt/man/summary.mcmc.sirt.Rd | 13 sirt-3.1-80/sirt/man/tam2mirt.Rd | 15 sirt-3.1-80/sirt/man/testlet.marginalized.Rd | 15 sirt-3.1-80/sirt/man/tetrachoric2.Rd | 4 sirt-3.1-80/sirt/man/truescore.irt.Rd | 13 sirt-3.1-80/sirt/man/unidim.test.csn.Rd | 13 sirt-3.1-80/sirt/man/wle.rasch.Rd | 14 sirt-3.1-80/sirt/man/wle.rasch.jackknife.Rd | 15 sirt-3.1-80/sirt/man/xxirt.Rd | 11 sirt-3.1-80/sirt/man/xxirt_createParTable.Rd | 11 sirt-3.1-80/sirt/man/xxirt_createThetaDistribution.Rd | 11 sirt-3.1-80/sirt/src/RcppExports.cpp | 784 ++++-- sirt-3.1-80/sirt/src/gooijer_isop_rcpp.cpp | 12 sirt-3.1-80/sirt/src/matrixfunctions_sirt_rcpp.cpp | 86 sirt-3.1-80/sirt/src/mle_pcm_group_rcpp.cpp | 2 sirt-3.1-80/sirt/src/polychoric2_tetrachoric2_rcpp.cpp | 147 - sirt-3.1-80/sirt/src/probs_multcat_items_counts_rcpp.cpp | 2 sirt-3.1-80/sirt/src/rm_smirt_mml2_rcpp.cpp | 2 sirt-3.1-80/sirt/src/sirt_rcpp_eigenvalues.cpp |only sirt-3.1-80/sirt/src/sirt_rcpp_eigenvalues.h |only sirt-3.1-80/sirt/src/sirt_rcpp_evm_comp_poly.cpp |only sirt-3.1-80/sirt/src/sirt_rcpp_inference_jackknife.cpp |only sirt-3.1-80/sirt/src/sirt_rcpp_inference_jackknife.h |only sirt-3.1-80/sirt/src/sirt_rcpp_invariance_alignment.cpp |only sirt-3.1-80/sirt/src/sirt_rcpp_linking_haebara.cpp |only sirt-3.1-80/sirt/src/sirt_rcpp_monoreg.cpp |only sirt-3.1-80/sirt/src/sirt_rcpp_noharm.cpp | 37 sirt-3.1-80/sirt/src/sirt_rcpp_rm_proc_data.cpp | 2 sirt-3.1-80/sirt/src/sirt_rcpp_rm_sdt.cpp | 2 sirt-3.1-80/sirt/src/sirt_rcpp_xxirt.cpp | 2 664 files changed, 4974 insertions(+), 4465 deletions(-)
Title: Tools for Earth Meteorological Analysis
Description: Contains many functions useful for managing 'NetCDF' files (see <http://en.wikipedia.org/wiki/NetCDF>), get tide levels on any point of the globe, get moon phase and time for sun rise and fall, analyse and reconstruct periodic time series of temperature with irregular sinusoidal pattern, show scales and wind rose in plot with change of color of text, Metropolis-Hastings algorithm for Bayesian MCMC analysis, plot graphs or boxplot with error bars, search files in disk by there names or their content, read the contents of all files from a folder at one time.
Author: Marc Girondot
Maintainer: Marc Girondot <marc.girondot@u-psud.fr>
Diff between HelpersMG versions 3.3 dated 2018-10-16 and 3.5 dated 2019-01-04
DESCRIPTION | 12 ++++++------ MD5 | 16 ++++++++++------ NAMESPACE | 5 +++++ NEWS | 7 +++++++ R/HelpersMG-package.R | 4 ++-- R/cArrows.R |only R/qvlmer.R |only R/tide.info.R | 22 ++++++++++++++++++---- man/HelpersMG-package.Rd | 4 ++-- man/cArrows.Rd |only man/qvlmer.Rd |only 11 files changed, 50 insertions(+), 20 deletions(-)
Title: Toolbox for Model Building and Forecasting
Description: Implements functions and instruments for regression model building and its
application to forecasting. The main scope of the package is in variables selection
and models specification for cases of time series data. This includes promotional
modelling, selection between different dynamic regressions with non-standard
distributions of errors, selection based on cross validation, solutions to the fat
regression model problem and more. Models developed in the package are tailored
specifically for forecasting purposes. So as a results there are several methods
that allow producing forecasts from these models and visualising them.
Author: Ivan Svetunkov [aut, cre] (Lecturer at Centre for Marketing Analytics
and Forecasting, Lancaster University, UK)
Maintainer: Ivan Svetunkov <ivan@svetunkov.ru>
Diff between greybox versions 0.3.3 dated 2018-11-30 and 0.4.0 dated 2019-01-04
DESCRIPTION | 8 MD5 | 79 +++++---- NAMESPACE | 26 +++ NEWS | 40 ++++ R/alm.R | 424 ++++++++++++++++++++++++++++++++++++-------------- R/association.R | 175 +++++++++++++++++--- R/cramer.R |only R/determination.R | 41 ++-- R/graphmaker.R | 138 ++++++++++------ R/greybox-package.R | 4 R/lmCombine.R | 129 +++++++++++---- R/lmDynamic.R | 19 -- R/mcor.R |only R/methods.R | 318 +++++++++++++++++++++++++++++++------ R/nemenyi.R | 6 R/rmc.R | 218 ++++++++++++++++--------- R/spread.R |only R/stepwise.R | 8 R/tableplot.R |only R/xregExpander.R | 93 +++++++--- R/xregMultiplier.R |only R/xregTransformer.R | 8 README.md | 42 +++- build/partial.rdb |binary build/vignette.rds |binary inst/doc/alm.Rmd | 2 inst/doc/alm.html | 84 +++++---- inst/doc/greybox.R | 2 inst/doc/greybox.Rmd | 15 + inst/doc/greybox.html | 76 ++++++-- inst/doc/ro.html | 24 +- man/alm.Rd | 66 ++++++- man/association.Rd |only man/cramer.Rd |only man/determination.Rd | 3 man/greybox.Rd | 4 man/lmCombine.Rd | 4 man/mcor.Rd |only man/rmc.Rd | 77 ++++----- man/spread.Rd |only man/tableplot.Rd |only man/xregExpander.Rd | 8 man/xregMultiplier.Rd |only vignettes/alm.Rmd | 2 vignettes/greybox.Rmd | 15 + vignettes/library.bib | 12 + 46 files changed, 1572 insertions(+), 598 deletions(-)
Title: Delaunay Triangulation and Dirichlet (Voronoi) Tessellation
Description: Calculates the Delaunay triangulation and the Dirichlet
or Voronoi tessellation (with respect to the entire plane) of
a planar point set. Plots triangulations and tessellations in
various ways. Clips tessellations to sub-windows. Calculates
perimeters of tessellations. Summarises information about the
tiles of the tessellation.
Author: Rolf Turner
Maintainer: Rolf Turner <r.turner@auckland.ac.nz>
Diff between deldir versions 0.1-15 dated 2018-04-01 and 0.1-16 dated 2019-01-04
ChangeLog | 18 ++++++++++ DESCRIPTION | 8 ++-- MD5 | 85 +++++++++++++++++++++++++++----------------------- data/niProperties.rda |only data/seaweed.rda |binary inst/ratfor/addpt.r | 4 +- inst/ratfor/cross.r | 6 +-- inst/ratfor/dirseg.r | 5 +- inst/ratfor/fexitf.r |only inst/ratfor/initad.r | 4 +- inst/ratfor/master.r | 7 ++-- inst/ratfor/trifnd.r | 27 ++++++++++++++- inst/ratfor/xsucc.r |only man/deldir.Rd | 79 ++++++++++++++++++++++++++++++++++++++++++++++ man/niProperties.Rd |only man/seaweed.Rd | 2 - src/acchk.f | 2 - src/addpt.f | 6 +-- src/adjchk.f | 2 - src/binsrt.f | 2 - src/circen.f | 2 - src/cross.f | 4 +- src/delet.f | 2 - src/delet1.f | 2 - src/delout.f | 2 - src/delseg.f | 2 - src/dirout.f | 2 - src/dirseg.f | 9 ++--- src/dldins.f | 2 - src/fexitc.c |only src/fexitf.f |only src/initad.f | 6 +-- src/insrt.f | 2 - src/insrt1.f | 2 - src/locn.f | 2 - src/master.f | 11 ++---- src/mnnd.f | 2 - src/pred.f | 2 - src/qtest.f | 2 - src/qtest1.f | 2 - src/stoke.f | 2 - src/succ.f | 2 - src/swap.f | 2 - src/testeq.f | 2 - src/triar.f | 2 - src/trifnd.f | 34 +++++++++++++++----- src/xsucc.f |only 47 files changed, 251 insertions(+), 108 deletions(-)
Title: A Mixture Model-Based Approach to the Clustering of Microarray
Expression Data
Description: Provides unsupervised selection and clustering of microarray data
using mixture models. Following the methods described in McLachlan, Bean and
Peel (2002) <doi:10.1093/bioinformatics/18.3.413> a subset of genes are selected
based one the likelihood ratio statistic for the test of one versus two
components when fitting mixtures of t-distributions to the expression data
for each gene. The dimensionality of this gene subset is further reduced through
the use of mixtures of factor analyzers, allowing the tissue samples to be
clustered by fitting mixtures of normal distributions.
Author: Andrew Thomas Jones
Maintainer: Andrew Thomas Jones <andrewthomasjones@gmail.com>
Diff between EMMIXgene versions 0.1.0 dated 2018-04-03 and 0.1.1 dated 2019-01-04
DESCRIPTION | 6 +++--- MD5 | 11 ++++++----- NEWS.md | 4 ++++ README.md |only build/vignette.rds |binary inst/include/tkmeans.h | 2 +- src/emmix.cpp | 4 ++-- 7 files changed, 16 insertions(+), 11 deletions(-)
Title: Data and Methods Around Reference Values in Pediatrics
Description: Calculation of standard deviation scores and percentiles adduced from different
growth standards (WHO, UK, Germany, Italy, China, etc). Therefore, the calculation of SDS-values
for different measures like BMI, weight, height, head circumference, different
ratios, etc. are easy to carry out. Also, references for laboratory values in
children and adults are available, e.g., serum lipids, iron-related blood parameters, IGF, liver enzymes. In the
new version, there are also functions combining the lms() function from package 'gamlss' with
resampling methods for using with repeated measurements and family dependencies. A searchable list
of items can be found here: <https://github.com/mvogel78/childsds/wiki>.
Author: Mandy Vogel [aut, cre]
Maintainer: Mandy Vogel <mandy.vogel@googlemail.com>
Diff between childsds versions 0.6.7 dated 2017-10-01 and 0.7.0 dated 2019-01-04
DESCRIPTION | 12 +-- MD5 | 45 ++++++++---- NAMESPACE | 2 NEWS.md | 17 ++++ R/createlms.R | 161 ++++++++++++++++++++++++++++++++++++++++--- R/data.R | 38 ++++++++++ R/misc.R | 2 R/mock.R |only R/sdsvals.r | 77 ++++++++++++++++++++ R/zzz.R | 2 data/aga_15.ref.rda |only data/bp_wuehl_age.ref.rda |only data/bp_wuehl_height.ref.rda |only data/kiggs.ref.rda |binary data/kiggs_bp.ref.rda |binary data/life_circ.ref.rda |only data/life_skinfold.ref.rda |only man/aga_15.ref.Rd |only man/bp_wuehl_age.ref.Rd |only man/bp_wuehl_height.ref.Rd |only man/do_iterations.Rd | 23 +++++- man/fit_gamlss.Rd | 4 - man/fit_gamlss1.Rd |only man/fit_vgam.Rd |only man/life_circ.ref.Rd |only man/life_skinfold.ref.Rd |only man/make_percentile_tab.Rd | 4 - man/mock_df.Rd |only man/mock_value.Rd |only man/mock_values.Rd |only man/one_iteration.Rd | 22 ++++- man/sdsold.Rd |only 32 files changed, 363 insertions(+), 46 deletions(-)
Title: Pretty Timeline Creation
Description: Create interactive timelines or Gantt charts that
are usable in the 'RStudio' viewer pane, in 'R Markdown' documents and in 'Shiny'
apps. Hover the mouse pointer over a point or task to show details or drag a rectangle to zoom in.
Timelines and their components can afterwards be manipulated using 'plotly_build()', which
transforms the plot into a mutable list.
Author: Sandro Raabe [aut, cre]
Maintainer: Sandro Raabe <shosaco_nospam@hotmail.com>
Diff between vistime versions 0.6.0 dated 2018-10-28 and 0.7.0 dated 2019-01-04
DESCRIPTION | 16 + MD5 | 39 +++- NAMESPACE | 8 NEWS.md | 8 R/fix_columns.R |only R/plot_events.R |only R/plot_glued.R |only R/plot_ranges.R |only R/set_colors.R |only R/set_subplots.R |only R/set_y_values.R |only R/validate_input.R |only R/vistime-package.R | 4 R/vistime.R | 410 +++++++++++--------------------------------- README.md | 129 +++++++++---- build |only inst/doc |only inst/img/ex2-yfontsize.png |only inst/img/ex3-markersize.png |only inst/img/ex3.png |binary man/fix_columns.Rd |only man/plot_events.Rd |only man/plot_glued.Rd |only man/plot_ranges.Rd |only man/set_colors.Rd |only man/set_subplots.Rd |only man/set_y_values.Rd |only man/validate_input.Rd |only man/vistime.Rd | 137 +++++++++----- vignettes |only 30 files changed, 344 insertions(+), 407 deletions(-)
Title: Linear Models for Panel Data
Description: A set of estimators and tests for panel data econometrics.
Author: Yves Croissant [aut, cre],
Giovanni Millo [aut],
Kevin Tappe [aut],
Ott Toomet [ctb],
Christian Kleiber [ctb],
Achim Zeileis [ctb],
Arne Henningsen [ctb],
Liviu Andronic [ctb],
Nina Schoenfelder [ctb]
Maintainer: Yves Croissant <yves.croissant@univ-reunion.fr>
Diff between plm versions 1.6-6 dated 2017-11-07 and 1.7-0 dated 2019-01-04
plm-1.6-6/plm/R/lagt.R |only plm-1.6-6/plm/inst/doc/plm.R |only plm-1.6-6/plm/inst/doc/plm.pdf |only plm-1.6-6/plm/inst/doc/plm.rnw |only plm-1.6-6/plm/tests/test_pdata.frame_assign_storage_mode.R |only plm-1.6-6/plm/vignettes/plm.rnw |only plm-1.7-0/plm/DESCRIPTION | 16 plm-1.7-0/plm/MD5 | 239 + plm-1.7-0/plm/NAMESPACE | 86 plm-1.7-0/plm/NEWS | 875 +++--- plm-1.7-0/plm/R/attributes.R | 7 plm-1.7-0/plm/R/cipstest.R | 36 plm-1.7-0/plm/R/deprecated.R | 57 plm-1.7-0/plm/R/detect_lin_dep_alias.R | 24 plm-1.7-0/plm/R/divers.R | 111 plm-1.7-0/plm/R/ercomp.R | 21 plm-1.7-0/plm/R/groupGenerics_pseries.R |only plm-1.7-0/plm/R/index.R | 21 plm-1.7-0/plm/R/make.pconsecutive_pbalanced.R | 10 plm-1.7-0/plm/R/options.R | 20 plm-1.7-0/plm/R/pFormula.R | 92 plm-1.7-0/plm/R/pcce.R | 134 - plm-1.7-0/plm/R/pcdtest.R | 38 plm-1.7-0/plm/R/pdata.frame.R | 1270 +++++----- plm-1.7-0/plm/R/pfunctions.R | 861 +++--- plm-1.7-0/plm/R/pggls.R | 62 plm-1.7-0/plm/R/pgmm.R | 159 - plm-1.7-0/plm/R/pgrangertest.R | 38 plm-1.7-0/plm/R/piest.R | 13 plm-1.7-0/plm/R/pldv.R | 26 plm-1.7-0/plm/R/plm.R | 317 +- plm-1.7-0/plm/R/pmg.R | 68 plm-1.7-0/plm/R/pserial.R | 236 + plm-1.7-0/plm/R/ptest.R | 50 plm-1.7-0/plm/R/purtest.R | 64 plm-1.7-0/plm/R/pvcm.R | 46 plm-1.7-0/plm/R/ranef.R | 10 plm-1.7-0/plm/R/vcovG.R | 28 plm-1.7-0/plm/build/vignette.rds |binary plm-1.7-0/plm/data/Cigar.rda |binary plm-1.7-0/plm/data/Crime.rda |binary plm-1.7-0/plm/data/EmplUK.rda |binary plm-1.7-0/plm/data/Gasoline.rda |binary plm-1.7-0/plm/data/Grunfeld.rda |binary plm-1.7-0/plm/data/Hedonic.rda |binary plm-1.7-0/plm/data/LaborSupply.rda |binary plm-1.7-0/plm/data/Males.rda |binary plm-1.7-0/plm/data/Parity.rda |binary plm-1.7-0/plm/data/Produc.rda |binary plm-1.7-0/plm/data/RiceFarms.rda |binary plm-1.7-0/plm/data/Snmesp.rda |binary plm-1.7-0/plm/data/SumHes.rda |binary plm-1.7-0/plm/data/Wages.rda |binary plm-1.7-0/plm/inst/doc/plmFunction.Rmd |only plm-1.7-0/plm/inst/doc/plmFunction.html |only plm-1.7-0/plm/inst/doc/plmPackage.Rmd |only plm-1.7-0/plm/inst/doc/plmPackage.html |only plm-1.7-0/plm/man/Crime.Rd | 29 plm-1.7-0/plm/man/aneweytest.Rd | 2 plm-1.7-0/plm/man/detect_lin_dep_alias.Rd | 142 - plm-1.7-0/plm/man/dynformula.Rd | 5 plm-1.7-0/plm/man/is.pconsecutive.Rd | 6 plm-1.7-0/plm/man/is.pseries.Rd |only plm-1.7-0/plm/man/lag_lead_diff.Rd | 87 plm-1.7-0/plm/man/make.pbalanced.Rd | 2 plm-1.7-0/plm/man/make.pconsecutive.Rd | 2 plm-1.7-0/plm/man/pFormula.Rd | 2 plm-1.7-0/plm/man/pbnftest.Rd |only plm-1.7-0/plm/man/pbsytest.Rd | 7 plm-1.7-0/plm/man/pcce.Rd | 23 plm-1.7-0/plm/man/pcdtest.Rd | 11 plm-1.7-0/plm/man/pdata.frame.Rd | 9 plm-1.7-0/plm/man/pdwtest.Rd | 14 plm-1.7-0/plm/man/pggls.Rd | 5 plm-1.7-0/plm/man/pgmm.Rd | 6 plm-1.7-0/plm/man/pgrangertest.Rd | 23 plm-1.7-0/plm/man/pht.Rd | 49 plm-1.7-0/plm/man/pldv.Rd | 9 plm-1.7-0/plm/man/plm.Rd | 31 plm-1.7-0/plm/man/plmtest.Rd | 2 plm-1.7-0/plm/man/pmodel.response.Rd | 9 plm-1.7-0/plm/man/pseries.Rd | 8 plm-1.7-0/plm/man/purtest.Rd | 4 plm-1.7-0/plm/man/pvcm.Rd | 24 plm-1.7-0/plm/man/pwaldtest.Rd | 29 plm-1.7-0/plm/man/r.squared.Rd | 4 plm-1.7-0/plm/man/reexports.Rd | 4 plm-1.7-0/plm/man/summary.plm.Rd | 23 plm-1.7-0/plm/man/vcovBK.Rd | 18 plm-1.7-0/plm/man/vcovG.Rd | 12 plm-1.7-0/plm/man/vcovHC.Rd | 20 plm-1.7-0/plm/man/within_intercept.Rd | 2 plm-1.7-0/plm/tests/Examples |only plm-1.7-0/plm/tests/test_Estimators.R | 72 plm-1.7-0/plm/tests/test_Estimators.Rout.save | 353 +- plm-1.7-0/plm/tests/test_FD_models.R |only plm-1.7-0/plm/tests/test_FD_models.Rout.save |only plm-1.7-0/plm/tests/test_IV.R | 43 plm-1.7-0/plm/tests/test_IV.Rout.save | 517 +++- plm-1.7-0/plm/tests/test_clubSandwich_interoperability.Rout.save | 8 plm-1.7-0/plm/tests/test_detect_lin_dep_alias.R | 34 plm-1.7-0/plm/tests/test_groupGenerics_pseries.R |only plm-1.7-0/plm/tests/test_groupGenerics_pseries.Rout.save |only plm-1.7-0/plm/tests/test_lag_lead.R | 199 - plm-1.7-0/plm/tests/test_lag_lead.Rout.save |only plm-1.7-0/plm/tests/test_lagt_leadt.R | 97 plm-1.7-0/plm/tests/test_lagt_leadt.Rout.save |only plm-1.7-0/plm/tests/test_make.pconsecutive_pbalanced.R | 9 plm-1.7-0/plm/tests/test_misc.R | 52 plm-1.7-0/plm/tests/test_nested.Rout.save | 42 plm-1.7-0/plm/tests/test_pbnftest.R |only plm-1.7-0/plm/tests/test_pbnftest.Rout.save |only plm-1.7-0/plm/tests/test_pdata.frame_extract_class_est_mod.R | 6 plm-1.7-0/plm/tests/test_pdata.frame_subsetting.R | 81 plm-1.7-0/plm/tests/test_pdata.frame_subsetting.Rout.save | 95 plm-1.7-0/plm/tests/test_pdiff_fd.R | 23 plm-1.7-0/plm/tests/test_pdwtest.R | 2 plm-1.7-0/plm/tests/test_pggls.R |only plm-1.7-0/plm/tests/test_pgmm.R | 67 plm-1.7-0/plm/tests/test_pgmm.Rout.save |only plm-1.7-0/plm/tests/test_pgrangertest.Rout.save | 10 plm-1.7-0/plm/tests/test_pht.R |only plm-1.7-0/plm/tests/test_pht.Rout.save |only plm-1.7-0/plm/tests/test_phtest_Hausman_regression.R | 4 plm-1.7-0/plm/tests/test_phtest_Hausman_regression.Rout.save |only plm-1.7-0/plm/tests/test_plmtest_unbalanced.R | 65 plm-1.7-0/plm/tests/test_plmtest_unbalanced.Rout.save | 71 plm-1.7-0/plm/tests/test_pvar.R | 4 plm-1.7-0/plm/tests/test_pvcm.R |only plm-1.7-0/plm/tests/test_pvcm.Rout.save |only plm-1.7-0/plm/tests/test_pwfdtest_pwartest.R | 95 plm-1.7-0/plm/tests/test_ranef.Rout.save | 38 plm-1.7-0/plm/tests/test_vcovG_lin_dep.R | 10 plm-1.7-0/plm/vignettes/bibliojss.bib | 95 plm-1.7-0/plm/vignettes/plmFunction.Rmd |only plm-1.7-0/plm/vignettes/plmPackage.Rmd |only 136 files changed, 4545 insertions(+), 3205 deletions(-)
Title: Pretty Heatmaps
Description: Implementation of heatmaps that offers more control
over dimensions and appearance.
Author: Raivo Kolde
Maintainer: Raivo Kolde <rkolde@gmail.com>
Diff between pheatmap versions 1.0.10 dated 2018-05-19 and 1.0.12 dated 2019-01-04
DESCRIPTION | 8 ++-- MD5 | 8 ++-- NEWS | 9 +++++ R/pheatmap.r | 94 +++++++++++++++++++++++++++++++++++++++++++------------- man/pheatmap.Rd | 23 +++++++++---- 5 files changed, 106 insertions(+), 36 deletions(-)
Title: Global Soil Information Facilities
Description: Global Soil Information Facilities - tools (standards and functions) and sample datasets for global soil mapping.
Author: Tomislav Hengl [cre, aut],
Bas Kempen [ctb],
Gerard Heuvelink [ctb],
Brendan Malone [ctb]
Maintainer: Tomislav Hengl <tom.hengl@opengeohub.org>
Diff between GSIF versions 0.5-4 dated 2017-05-14 and 0.5-5 dated 2019-01-04
DESCRIPTION | 19 - MD5 | 102 +++--- R/AAAA.R | 7 R/AWCPTF.R | 110 +++---- R/LRI.R | 303 +++++++++---------- R/OCSKGM.R | 55 +-- R/RESTSoilGrids.R | 7 R/SAGA.R | 91 ++--- R/SoilGrid.validator.R | 370 +++++++++++------------- R/TT2tri.R | 101 +++--- R/WPSworldgrids.R | 206 ++++++------- R/as.data.frame.R | 171 +++++------ R/as.geosamples.R | 750 ++++++++++++++++++++++++------------------------- R/autopredict.R | 382 ++++++++++++------------ R/buffer.dist.R | 7 R/extract.list.R | 190 ++++++------ R/fit.gstatModel.R | 411 +++++++++++++------------- R/fit.regModel.R | 541 +++++++++++++++++------------------ R/fit.vgmModel.R | 297 +++++++++---------- R/fkmeans.R | 201 ++++++------- R/getID.R | 93 ++---- R/gstat.R | 276 ++++++++---------- R/make.3Dgrid.R | 299 +++++++++---------- R/merge.R | 178 +++++------ R/mpspline.R | 8 R/predict.gstatModel.R | 8 R/sample.grid.R | 101 +++--- R/spc.R | 7 R/spline.krige.R | 256 ++++++++-------- R/spmultinom.R | 177 +++++------ R/spsample.prob.R | 87 ++--- R/summary.R | 201 ++++++------- R/test.gstatModel.R | 296 +++++++++---------- R/tile.R | 440 ++++++++++++++-------------- R/validate.R | 170 +++++------ R/warp.R | 386 ++++++++++++------------- data/USDA.TT.im.rda |binary data/afsp.rda |binary data/cookfarm.rda |binary data/edgeroi.rda |binary data/geochm.rda |binary data/isis.rda |binary data/landmask.rda |binary data/landmask20km.rda |binary data/munsell.rda |binary data/soil.classes.rda |binary data/soil.dom.rda |binary data/soil.legends.rda |binary data/soil.vars.rda |binary man/GlobalSoilMap.Rd | 4 man/SoilGrids.Rd | 2 man/autopredict.Rd | 2 52 files changed, 3548 insertions(+), 3764 deletions(-)
Title: A Future API for Parallel and Distributed Processing using
'batchtools'
Description: Implementation of the Future API on top of the 'batchtools' package.
This allows you to process futures, as defined by the 'future' package,
in parallel out of the box, not only on your local machine or ad-hoc
cluster of machines, but also via high-performance compute ('HPC') job
schedulers such as 'LSF', 'OpenLava', 'Slurm', 'SGE', and 'TORQUE' / 'PBS',
e.g. 'y <- future.apply::future_lapply(files, FUN = process)'.
Author: Henrik Bengtsson [aut, cre, cph]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between future.batchtools versions 0.7.1 dated 2018-07-18 and 0.7.2 dated 2019-01-04
DESCRIPTION | 10 +++--- MD5 | 31 +++++++++--------- NAMESPACE | 2 + NEWS | 68 ++++++++++++++++++++++++++--------------- R/BatchtoolsFuture-class.R | 14 +++----- R/batchtools_custom.R | 2 + R/utils.R | 15 +++++++++ inst/WORDLIST |only man/BatchtoolsFuture.Rd | 4 +- man/batchtools_custom.Rd | 16 ++++++++- man/batchtools_multicore.Rd | 4 +- man/batchtools_template.Rd | 20 ++++++------ man/delete.BatchtoolsFuture.Rd | 4 +- tests/BatchtoolsFutureError.R | 2 - tests/batchtools_multicore.R | 2 - tests/future,lazy.R | 7 ++++ tests/stdout.R | 33 +++++++------------ 17 files changed, 140 insertions(+), 94 deletions(-)
More information about future.batchtools at CRAN
Permanent link
Title: Independence Testing via Hilbert Schmidt Independence Criterion
Description: Contains an implementation of the
d-variable Hilbert Schmidt independence criterion
and several hypothesis tests based on it, as described
in Pfister et al. (2017) <doi:10.1111/rssb.12235>.
Author: Niklas Pfister and Jonas Peters
Maintainer: Niklas Pfister <pfister@stat.math.ethz.ch>
Diff between dHSIC versions 2.0 dated 2017-07-27 and 2.1 dated 2019-01-04
dHSIC-2.0/dHSIC/src/dHSIC_init.c |only dHSIC-2.1/dHSIC/DESCRIPTION | 10 +++++----- dHSIC-2.1/dHSIC/MD5 | 15 +++++++-------- dHSIC-2.1/dHSIC/NAMESPACE | 6 +++--- dHSIC-2.1/dHSIC/R/RcppExports.R | 8 ++++---- dHSIC-2.1/dHSIC/R/dhsic.R | 9 ++------- dHSIC-2.1/dHSIC/R/dhsic.test.R | 21 +++------------------ dHSIC-2.1/dHSIC/build/partial.rdb |binary dHSIC-2.1/dHSIC/src/RcppExports.cpp | 21 +++++++++++++++++---- 9 files changed, 41 insertions(+), 49 deletions(-)
Title: HTTP Client
Description: A simple HTTP client, with tools for making HTTP requests,
and mocking HTTP requests. The package is built on R6, and takes
inspiration from Ruby's 'faraday' gem (<https://rubygems.org/gems/faraday>).
The package name is a play on curl, the widely used command line tool
for HTTP, and this package is built on top of the R package 'curl', an
interface to 'libcurl' (<https://curl.haxx.se/libcurl>).
Author: Scott Chamberlain [aut, cre] (<https://orcid.org/0000-0003-1444-9135>)
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between crul versions 0.6.0 dated 2018-07-10 and 0.7.0 dated 2019-01-04
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Title: An R Interface to the NOAA Operational Model Archive and
Distribution System
Description: An interface to the National Oceanic and Atmospheric Administration's Operational Model Archive and Distribution System (NOMADS, see <http://nomads.ncep.noaa.gov/> for more information) that allows R users to quickly and efficiently download global and regional weather model data for processing. rNOMADS currently supports a variety of models ranging from global weather data to an altitude of over 40 km, to high resolution regional weather models, to wave and sea ice models. It can also retrieve archived NOMADS models. rNOMADS can retrieve binary data in grib format as well as import ascii data directly into R by interfacing with the GrADS-DODS system.
Author: Daniel C. Bowman [aut, cre]
Maintainer: Daniel C. Bowman <danny.c.bowman@gmail.com>
Diff between rNOMADS versions 2.3.10 dated 2018-07-18 and 2.4.0 dated 2019-01-04
DESCRIPTION | 10 ++--- MD5 | 20 +++++------ NEWS | 4 ++ R/GetDODS.R | 5 +- R/GetRealTimeGrib.R | 45 +++++++++++++++++++------ R/Models.R | 81 +++++++++++++++++++++++++++------------------- R/RNomadsTools.R | 11 +++++- R/onAttach.R | 4 +- man/CrawlModels.Rd | 4 +- man/GetDODSDates.Rd | 5 ++ man/NOMADSRealTimeList.Rd | 9 +++-- 11 files changed, 127 insertions(+), 71 deletions(-)
Title: Visualizing and Analyzing Mass Spectrometry Related Data in
Proteomics
Description: Helps with quality checks, visualizations
and analysis of mass spectrometry data, coming from proteomics
experiments. The package is developed, tested and used at the Functional
Genomics Center Zurich. We use this package mainly for prototyping,
teaching, and having fun with proteomics data. But it can also be
used to do data analysis for small scale data sets.
Author: Christian Panse [aut, cre] (<https://orcid.org/0000-0003-1975-3064>),
Jonas Grossmann [aut] (<https://orcid.org/0000-0002-6899-9020>),
Simon Barkow-Oesterreicher [ctb]
Maintainer: Christian Panse <cp@fgcz.ethz.ch>
Diff between protViz versions 0.3.1 dated 2018-06-22 and 0.4.0 dated 2019-01-04
DESCRIPTION | 6 +- MD5 | 57 +++++++++++++------------- NAMESPACE | 8 --- R/fragmentIon.R | 69 +++++++++++++++++++++++++++----- R/peakplot.R | 4 - R/ssrc.R | 7 +-- R/sysdata.rda |binary build/vignette.rds |binary data/AA.RData |binary data/HexNAc.RData |binary data/averagine.RData |binary data/fetuinLFQ.RData |binary data/iRTpeptides.RData |binary data/iTRAQ.RData |binary data/msms.RData |binary data/pgLFQfeature.RData |binary data/pgLFQprot.RData |binary data/pressureProfile.RData |binary inst/CITATION | 73 ++++------------------------------ inst/NEWS.Rd | 7 +++ inst/doc/PTM_MarkerFinder.pdf |binary inst/doc/poster.pdf |binary inst/doc/protViz.R | 57 +++++++++++++++----------- inst/doc/protViz.Rnw | 28 ++++++++----- inst/doc/protViz.pdf |binary inst/shiny-examples/peakplot/global.R |only man/fragmentIons.Rd | 31 +++++++------- man/peakplot.Rd | 4 + src/Makevars | 8 --- vignettes/protViz.Rnw | 28 ++++++++----- 30 files changed, 208 insertions(+), 179 deletions(-)
Title: Modeling and Analysis of Stochastic Systems
Description: Compute important quantities when we consider stochastic systems that are observed continuously. Such as, Cost model, Limiting distribution, Transition matrix, Transition distribution and Occupancy matrix. The methods are described, for example, Ross S. (2014), Introduction to Probability Models. Eleven Edition. Academic Press.
Author: Carlos Alberto Cardozo Delgado
Maintainer: Carlos Alberto Cardozo Delgado <cardozorpackages@gmail.com>
Diff between modesto versions 0.1.1 dated 2018-11-09 and 0.1.2 dated 2019-01-04
DESCRIPTION | 6 +++--- MD5 | 24 ++++++++++++++---------- NAMESPACE | 3 +++ R/ETCt.R | 2 +- R/LRC.R |only R/LimDist.R | 40 ++++++++++++++++++++++++++-------------- R/Mt.R | 2 +- R/PXt.R | 3 ++- R/summary.R |only man/ETCt.Rd | 2 +- man/LRC.Rd |only man/LimDist.Rd | 8 ++++++-- man/Mt.Rd | 2 +- man/PXt.Rd | 3 ++- man/summary.modesto.Rd |only 15 files changed, 60 insertions(+), 35 deletions(-)
Title: A 'ggplot2'-Plot of Composition of Solvency II SCR: SF and IM
Description: An implementation of 'ggplot2'-methods to present the composition of Solvency II Solvency Capital Requirement (SCR) as a series of concentric circle-parts.
Solvency II (Solvency 2) is European insurance legislation, coming in force by the delegated acts of October 10, 2014.
<https://eur-lex.europa.eu/legal-content/EN/TXT/?uri=OJ%3AL%3A2015%3A012%3ATOC>.
Additional files, defining the structure of the Standard Formula (SF) method of the SCR-calculation are provided.
The structure files can be adopted for localization or for insurance companies who use Internal Models (IM).
Options are available for combining smaller components, horizontal and vertical scaling, rotation, and plotting only some circle-parts.
With outlines and connectors several SCR-compositions can be compared, for example in ORSA-scenarios (Own Risk and Solvency Assessment).
Author: Marco van Zanden [aut, cre]
Maintainer: Marco van Zanden <git@vanzanden.nl>
Diff between ggsolvencyii versions 0.1.1 dated 2018-11-19 and 0.1.2 dated 2019-01-04
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Title: Datasets for Stat2
Description: Datasets for the textbook Stat2: Modeling with Regression and ANOVA (second edition).
The package also includes data for the first edition, Stat2: Building Models for a World of Data
and a few functions for plotting diagnostics.
Author: Ann Cannon, George Cobb, Bradley Hartlaub, Julie Legler, Robin Lock, Thomas Moore, Allan Rossman, Jeffrey Witmer
Maintainer: Robin Lock <rlock@stlawu.edu>
Diff between Stat2Data versions 1.6 dated 2013-01-05 and 2.0.0 dated 2019-01-04
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Stat2Data-2.0.0/Stat2Data/data/DiabeticDogs.rda |only Stat2Data-2.0.0/Stat2Data/data/Diamonds.rda |binary Stat2Data-2.0.0/Stat2Data/data/Diamonds2.rda |binary Stat2Data-2.0.0/Stat2Data/data/Dinosaurs.rda |only Stat2Data-2.0.0/Stat2Data/data/Election08.rda |binary Stat2Data-2.0.0/Stat2Data/data/Election16.rda |only Stat2Data-2.0.0/Stat2Data/data/ElephantsFB.rda |only Stat2Data-2.0.0/Stat2Data/data/ElephantsMF.rda |only Stat2Data-2.0.0/Stat2Data/data/Ethanol.rda |binary Stat2Data-2.0.0/Stat2Data/data/Eyes.rda |only Stat2Data-2.0.0/Stat2Data/data/FGByDistance.rda |binary Stat2Data-2.0.0/Stat2Data/data/Faces.rda |only Stat2Data-2.0.0/Stat2Data/data/FaithfulFaces.rda |only Stat2Data-2.0.0/Stat2Data/data/FantasyBaseball.rda |binary Stat2Data-2.0.0/Stat2Data/data/FatRats.rda |only Stat2Data-2.0.0/Stat2Data/data/Fertility.rda |binary Stat2Data-2.0.0/Stat2Data/data/Film.rda |binary Stat2Data-2.0.0/Stat2Data/data/FinalFourIzzo.rda |binary Stat2Data-2.0.0/Stat2Data/data/FinalFourIzzo17.rda |only Stat2Data-2.0.0/Stat2Data/data/FinalFourLong.rda |binary Stat2Data-2.0.0/Stat2Data/data/FinalFourLong17.rda |only Stat2Data-2.0.0/Stat2Data/data/FinalFourShort.rda |binary Stat2Data-2.0.0/Stat2Data/data/FinalFourShort17.rda |only Stat2Data-2.0.0/Stat2Data/data/Fingers.rda |binary Stat2Data-2.0.0/Stat2Data/data/FirstYearGPA.rda |binary Stat2Data-2.0.0/Stat2Data/data/FishEggs.rda |binary Stat2Data-2.0.0/Stat2Data/data/Fitch.rda |only Stat2Data-2.0.0/Stat2Data/data/FlightResponse.rda |binary Stat2Data-2.0.0/Stat2Data/data/FloridaDP.rda |only Stat2Data-2.0.0/Stat2Data/data/Fluorescence.rda |binary Stat2Data-2.0.0/Stat2Data/data/FranticFingers.rda |only Stat2Data-2.0.0/Stat2Data/data/FruitFlies.rda |binary Stat2Data-2.0.0/Stat2Data/data/FruitFlies2.rda |only Stat2Data-2.0.0/Stat2Data/data/FunnelDrop.rda |only Stat2Data-2.0.0/Stat2Data/data/GlowWorms.rda |only Stat2Data-2.0.0/Stat2Data/data/Goldenrod.rda |binary Stat2Data-2.0.0/Stat2Data/data/GrinnellHouses.rda |only Stat2Data-2.0.0/Stat2Data/data/Grocery.rda |binary Stat2Data-2.0.0/Stat2Data/data/Gunnels.rda |binary Stat2Data-2.0.0/Stat2Data/data/Handwriting.rda |only Stat2Data-2.0.0/Stat2Data/data/HawkTail.rda |binary Stat2Data-2.0.0/Stat2Data/data/HawkTail2.rda |binary Stat2Data-2.0.0/Stat2Data/data/Hawks.rda |binary Stat2Data-2.0.0/Stat2Data/data/HearingTest.rda |binary Stat2Data-2.0.0/Stat2Data/data/HeatingOil.rda |only Stat2Data-2.0.0/Stat2Data/data/HighPeaks.rda |binary Stat2Data-2.0.0/Stat2Data/data/Hoops.rda |binary Stat2Data-2.0.0/Stat2Data/data/HorsePrices.rda |binary Stat2Data-2.0.0/Stat2Data/data/Houses.rda |binary Stat2Data-2.0.0/Stat2Data/data/HousesNY.rda |only Stat2Data-2.0.0/Stat2Data/data/ICU.rda |binary Stat2Data-2.0.0/Stat2Data/data/IQGuessing.rda |only Stat2Data-2.0.0/Stat2Data/data/InfantMortality2010.rda |only Stat2Data-2.0.0/Stat2Data/data/Inflation.rda |only Stat2Data-2.0.0/Stat2Data/data/InsuranceVote.rda |binary Stat2Data-2.0.0/Stat2Data/data/Jurors.rda |binary Stat2Data-2.0.0/Stat2Data/data/Kershaw.rda |only Stat2Data-2.0.0/Stat2Data/data/KeyWestWater.rda |only Stat2Data-2.0.0/Stat2Data/data/Kids198.rda |binary Stat2Data-2.0.0/Stat2Data/data/LeafWidth.rda |only Stat2Data-2.0.0/Stat2Data/data/Leafhoppers.rda |only Stat2Data-2.0.0/Stat2Data/data/Leukemia.rda |binary Stat2Data-2.0.0/Stat2Data/data/LeveeFailures.rda |only Stat2Data-2.0.0/Stat2Data/data/LewyBody2Groups.rda |only Stat2Data-2.0.0/Stat2Data/data/LewyDLBad.rda |only Stat2Data-2.0.0/Stat2Data/data/LongJumpOlympics.rda |binary Stat2Data-2.0.0/Stat2Data/data/LongJumpOlympics2016.rda |only Stat2Data-2.0.0/Stat2Data/data/LosingSleep.rda |only Stat2Data-2.0.0/Stat2Data/data/LostLetter.rda |binary Stat2Data-2.0.0/Stat2Data/data/MLB2007Standings.rda |binary Stat2Data-2.0.0/Stat2Data/data/MLBStandings2016.rda |only Stat2Data-2.0.0/Stat2Data/data/Marathon.rda |binary Stat2Data-2.0.0/Stat2Data/data/Markets.rda |binary Stat2Data-2.0.0/Stat2Data/data/MathEnrollment.rda |binary Stat2Data-2.0.0/Stat2Data/data/MathPlacement.rda |binary Stat2Data-2.0.0/Stat2Data/data/MedGPA.rda |binary Stat2Data-2.0.0/Stat2Data/data/Meniscus.rda |only Stat2Data-2.0.0/Stat2Data/data/MentalHealth.rda |binary Stat2Data-2.0.0/Stat2Data/data/MetabolicRate.rda |binary Stat2Data-2.0.0/Stat2Data/data/MetroCommutes.rda |only Stat2Data-2.0.0/Stat2Data/data/MetroHealth83.rda |binary Stat2Data-2.0.0/Stat2Data/data/Migraines.rda |only Stat2Data-2.0.0/Stat2Data/data/Milgram.rda |binary Stat2Data-2.0.0/Stat2Data/data/MothEggs.rda |binary Stat2Data-2.0.0/Stat2Data/data/MouseBrain.rda |only Stat2Data-2.0.0/Stat2Data/data/MusicTime.rda |only Stat2Data-2.0.0/Stat2Data/data/NCbirths.rda |binary Stat2Data-2.0.0/Stat2Data/data/NFL2007Standings.rda |binary Stat2Data-2.0.0/Stat2Data/data/NFLStandings2016.rda |only Stat2Data-2.0.0/Stat2Data/data/Nursing.rda |binary Stat2Data-2.0.0/Stat2Data/data/OilDeapsorbtion.rda |only Stat2Data-2.0.0/Stat2Data/data/Olives.rda |binary 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Stat2Data-2.0.0/Stat2Data/data/Undoing.rda |only Stat2Data-2.0.0/Stat2Data/data/VisualVerbal.rda |only Stat2Data-2.0.0/Stat2Data/data/Volts.rda |binary Stat2Data-2.0.0/Stat2Data/data/WalkTheDogs.rda |only Stat2Data-2.0.0/Stat2Data/data/WalkingBabies.rda |binary Stat2Data-2.0.0/Stat2Data/data/WeightLossIncentive.rda |binary Stat2Data-2.0.0/Stat2Data/data/WeightLossIncentive4.rda |binary Stat2Data-2.0.0/Stat2Data/data/WeightLossIncentive7.rda |binary Stat2Data-2.0.0/Stat2Data/data/Whickham2.rda |only Stat2Data-2.0.0/Stat2Data/data/WordMemory.rda |binary Stat2Data-2.0.0/Stat2Data/data/WordsWithFriends.rda |only Stat2Data-2.0.0/Stat2Data/data/Wrinkle.rda |only Stat2Data-2.0.0/Stat2Data/data/YouthRisk.rda |only Stat2Data-2.0.0/Stat2Data/data/YouthRisk2007.rda |binary Stat2Data-2.0.0/Stat2Data/data/YouthRisk2009.rda |binary Stat2Data-2.0.0/Stat2Data/data/Zimmerman.rda |only Stat2Data-2.0.0/Stat2Data/man/AHCAvote2017.Rd |only Stat2Data-2.0.0/Stat2Data/man/AccordPrice.Rd |only Stat2Data-2.0.0/Stat2Data/man/Airlines.Rd |only Stat2Data-2.0.0/Stat2Data/man/Alfalfa.Rd | 13 Stat2Data-2.0.0/Stat2Data/man/AlitoConfirmation.Rd |only Stat2Data-2.0.0/Stat2Data/man/Amyloid.Rd |only Stat2Data-2.0.0/Stat2Data/man/AppleStock.Rd |only Stat2Data-2.0.0/Stat2Data/man/ArcheryData.Rd | 4 Stat2Data-2.0.0/Stat2Data/man/AthleteGrad.Rd |only Stat2Data-2.0.0/Stat2Data/man/AudioVisual.Rd |only Stat2Data-2.0.0/Stat2Data/man/AutoPollution.Rd | 9 Stat2Data-2.0.0/Stat2Data/man/Backpack.Rd | 9 Stat2Data-2.0.0/Stat2Data/man/BaseballTimes.Rd | 11 Stat2Data-2.0.0/Stat2Data/man/BaseballTimes2017.Rd |only Stat2Data-2.0.0/Stat2Data/man/BeeStings.Rd | 17 Stat2Data-2.0.0/Stat2Data/man/BirdCalcium.Rd |only Stat2Data-2.0.0/Stat2Data/man/BirdNest.Rd | 11 Stat2Data-2.0.0/Stat2Data/man/Blood1.Rd | 11 Stat2Data-2.0.0/Stat2Data/man/BlueJays.Rd | 7 Stat2Data-2.0.0/Stat2Data/man/BrainpH.Rd |only Stat2Data-2.0.0/Stat2Data/man/BreesPass.Rd |only Stat2Data-2.0.0/Stat2Data/man/BritishUnions.Rd | 5 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Stat2Data-2.0.0/Stat2Data/man/CrabShip.Rd |only Stat2Data-2.0.0/Stat2Data/man/CrackerFiber.Rd | 8 Stat2Data-2.0.0/Stat2Data/man/CreditRisk.Rd |only Stat2Data-2.0.0/Stat2Data/man/Cuckoo.Rd | 11 Stat2Data-2.0.0/Stat2Data/man/Day1Survey.Rd | 11 Stat2Data-2.0.0/Stat2Data/man/DiabeticDogs.Rd |only Stat2Data-2.0.0/Stat2Data/man/Diamonds.Rd | 11 Stat2Data-2.0.0/Stat2Data/man/Diamonds2.Rd | 15 Stat2Data-2.0.0/Stat2Data/man/Dinosaurs.Rd |only Stat2Data-2.0.0/Stat2Data/man/Election08.Rd | 19 Stat2Data-2.0.0/Stat2Data/man/Election16.Rd |only Stat2Data-2.0.0/Stat2Data/man/ElephantsFB.Rd |only Stat2Data-2.0.0/Stat2Data/man/ElephantsMF.Rd |only Stat2Data-2.0.0/Stat2Data/man/Ethanol.Rd | 16 Stat2Data-2.0.0/Stat2Data/man/Eyes.Rd |only Stat2Data-2.0.0/Stat2Data/man/FGByDistance.Rd | 15 Stat2Data-2.0.0/Stat2Data/man/Faces.Rd |only Stat2Data-2.0.0/Stat2Data/man/FaithfulFaces.Rd |only Stat2Data-2.0.0/Stat2Data/man/FantasyBaseball.Rd | 9 Stat2Data-2.0.0/Stat2Data/man/FatRats.Rd |only Stat2Data-2.0.0/Stat2Data/man/Fertility.Rd | 13 Stat2Data-2.0.0/Stat2Data/man/Film.Rd | 11 Stat2Data-2.0.0/Stat2Data/man/FinalFourIzzo.Rd | 16 Stat2Data-2.0.0/Stat2Data/man/FinalFourIzzo17.Rd |only Stat2Data-2.0.0/Stat2Data/man/FinalFourLong.Rd | 20 Stat2Data-2.0.0/Stat2Data/man/FinalFourLong17.Rd |only Stat2Data-2.0.0/Stat2Data/man/FinalFourShort.Rd | 20 Stat2Data-2.0.0/Stat2Data/man/FinalFourShort17.Rd |only Stat2Data-2.0.0/Stat2Data/man/Fingers.Rd | 27 Stat2Data-2.0.0/Stat2Data/man/FirstYearGPA.Rd | 9 Stat2Data-2.0.0/Stat2Data/man/FishEggs.Rd | 10 Stat2Data-2.0.0/Stat2Data/man/Fitch.Rd |only Stat2Data-2.0.0/Stat2Data/man/FlightResponse.Rd | 5 Stat2Data-2.0.0/Stat2Data/man/FloridaDP.Rd |only Stat2Data-2.0.0/Stat2Data/man/Fluorescence.Rd | 7 Stat2Data-2.0.0/Stat2Data/man/FranticFingers.Rd |only Stat2Data-2.0.0/Stat2Data/man/FruitFlies.Rd | 13 Stat2Data-2.0.0/Stat2Data/man/FruitFlies2.Rd |only Stat2Data-2.0.0/Stat2Data/man/FunnelDrop.Rd |only Stat2Data-2.0.0/Stat2Data/man/GlowWorms.Rd |only Stat2Data-2.0.0/Stat2Data/man/Goldenrod.Rd | 3 Stat2Data-2.0.0/Stat2Data/man/GrinnellHouses.Rd |only Stat2Data-2.0.0/Stat2Data/man/Grocery.Rd | 9 Stat2Data-2.0.0/Stat2Data/man/Gunnels.Rd | 13 Stat2Data-2.0.0/Stat2Data/man/Handwriting.Rd |only Stat2Data-2.0.0/Stat2Data/man/HawkTail.Rd | 9 Stat2Data-2.0.0/Stat2Data/man/HawkTail2.Rd | 12 Stat2Data-2.0.0/Stat2Data/man/Hawks.Rd | 19 Stat2Data-2.0.0/Stat2Data/man/HearingTest.Rd | 21 Stat2Data-2.0.0/Stat2Data/man/HeatingOil.Rd |only Stat2Data-2.0.0/Stat2Data/man/HighPeaks.Rd | 17 Stat2Data-2.0.0/Stat2Data/man/Hoops.Rd | 7 Stat2Data-2.0.0/Stat2Data/man/HorsePrices.Rd | 9 Stat2Data-2.0.0/Stat2Data/man/Houses.Rd | 11 Stat2Data-2.0.0/Stat2Data/man/HousesNY.Rd |only Stat2Data-2.0.0/Stat2Data/man/ICU.Rd | 11 Stat2Data-2.0.0/Stat2Data/man/IQGuessing.Rd |only Stat2Data-2.0.0/Stat2Data/man/InfantMortality2010.Rd |only Stat2Data-2.0.0/Stat2Data/man/Inflation.Rd |only Stat2Data-2.0.0/Stat2Data/man/InsuranceVote.Rd | 15 Stat2Data-2.0.0/Stat2Data/man/Jurors.Rd | 9 Stat2Data-2.0.0/Stat2Data/man/Kershaw.Rd |only Stat2Data-2.0.0/Stat2Data/man/KeyWestWater.Rd |only Stat2Data-2.0.0/Stat2Data/man/Kids198.Rd | 13 Stat2Data-2.0.0/Stat2Data/man/LeafWidth.Rd |only Stat2Data-2.0.0/Stat2Data/man/Leafhoppers.Rd |only Stat2Data-2.0.0/Stat2Data/man/Leukemia.Rd | 7 Stat2Data-2.0.0/Stat2Data/man/LeveeFailures.Rd |only Stat2Data-2.0.0/Stat2Data/man/LewyBody2Groups.Rd |only Stat2Data-2.0.0/Stat2Data/man/LewyDLBad.Rd |only Stat2Data-2.0.0/Stat2Data/man/LongJumpOlympics.Rd | 15 Stat2Data-2.0.0/Stat2Data/man/LongJumpOlympics2016.Rd |only Stat2Data-2.0.0/Stat2Data/man/LosingSleep.Rd |only Stat2Data-2.0.0/Stat2Data/man/LostLetter.Rd | 15 Stat2Data-2.0.0/Stat2Data/man/MLB2007Standings.Rd | 12 Stat2Data-2.0.0/Stat2Data/man/MLBStandings2016.Rd |only Stat2Data-2.0.0/Stat2Data/man/Marathon.Rd | 6 Stat2Data-2.0.0/Stat2Data/man/Markets.Rd | 17 Stat2Data-2.0.0/Stat2Data/man/MathEnrollment.Rd | 8 Stat2Data-2.0.0/Stat2Data/man/MathPlacement.Rd | 6 Stat2Data-2.0.0/Stat2Data/man/MedGPA.Rd | 4 Stat2Data-2.0.0/Stat2Data/man/Meniscus.Rd |only Stat2Data-2.0.0/Stat2Data/man/MentalHealth.Rd | 6 Stat2Data-2.0.0/Stat2Data/man/MetabolicRate.Rd | 2 Stat2Data-2.0.0/Stat2Data/man/MetroCommutes.Rd |only Stat2Data-2.0.0/Stat2Data/man/MetroHealth83.Rd | 14 Stat2Data-2.0.0/Stat2Data/man/Migraines.Rd |only Stat2Data-2.0.0/Stat2Data/man/Milgram.Rd | 15 Stat2Data-2.0.0/Stat2Data/man/MothEggs.Rd | 2 Stat2Data-2.0.0/Stat2Data/man/MouseBrain.Rd |only Stat2Data-2.0.0/Stat2Data/man/MusicTime.Rd |only Stat2Data-2.0.0/Stat2Data/man/NCbirths.Rd | 4 Stat2Data-2.0.0/Stat2Data/man/NFL2007Standings.Rd | 8 Stat2Data-2.0.0/Stat2Data/man/NFLStandings2016.Rd |only Stat2Data-2.0.0/Stat2Data/man/Nursing.Rd | 10 Stat2Data-2.0.0/Stat2Data/man/OilDeapsorbtion.Rd |only Stat2Data-2.0.0/Stat2Data/man/Olives.Rd | 4 Stat2Data-2.0.0/Stat2Data/man/Orings.Rd | 10 Stat2Data-2.0.0/Stat2Data/man/Overdrawn.Rd | 9 Stat2Data-2.0.0/Stat2Data/man/Oysters.Rd |only Stat2Data-2.0.0/Stat2Data/man/PKU.Rd |only Stat2Data-2.0.0/Stat2Data/man/PalmBeach.Rd | 15 Stat2Data-2.0.0/Stat2Data/man/PeaceBridge2003.Rd |only Stat2Data-2.0.0/Stat2Data/man/PeaceBridge2012.Rd |only Stat2Data-2.0.0/Stat2Data/man/Pedometer.Rd | 5 Stat2Data-2.0.0/Stat2Data/man/Perch.Rd | 4 Stat2Data-2.0.0/Stat2Data/man/PigFeed.Rd | 7 Stat2Data-2.0.0/Stat2Data/man/Pines.Rd | 5 Stat2Data-2.0.0/Stat2Data/man/Political.Rd | 7 Stat2Data-2.0.0/Stat2Data/man/Pollster08.Rd | 8 Stat2Data-2.0.0/Stat2Data/man/Popcorn.Rd | 7 Stat2Data-2.0.0/Stat2Data/man/PorscheJaguar.Rd | 5 Stat2Data-2.0.0/Stat2Data/man/PorschePrice.Rd | 15 Stat2Data-2.0.0/Stat2Data/man/Pulse.Rd | 12 Stat2Data-2.0.0/Stat2Data/man/Putts1.Rd | 11 Stat2Data-2.0.0/Stat2Data/man/Putts2.Rd | 12 Stat2Data-2.0.0/Stat2Data/man/Putts3.Rd |only Stat2Data-2.0.0/Stat2Data/man/RacialAnimus.Rd |only Stat2Data-2.0.0/Stat2Data/man/RadioactiveTwins.Rd |only Stat2Data-2.0.0/Stat2Data/man/RailsTrails.Rd |only Stat2Data-2.0.0/Stat2Data/man/Rectangles.Rd |only Stat2Data-2.0.0/Stat2Data/man/ReligionGDP.Rd | 6 Stat2Data-2.0.0/Stat2Data/man/RepeatedPulse.Rd |only Stat2Data-2.0.0/Stat2Data/man/ResidualOil.Rd |only Stat2Data-2.0.0/Stat2Data/man/Retirement.Rd | 4 Stat2Data-2.0.0/Stat2Data/man/Ricci.Rd |only Stat2Data-2.0.0/Stat2Data/man/RiverElements.Rd | 16 Stat2Data-2.0.0/Stat2Data/man/RiverIron.Rd | 15 Stat2Data-2.0.0/Stat2Data/man/SATGPA.Rd | 6 Stat2Data-2.0.0/Stat2Data/man/SampleFG.Rd | 9 Stat2Data-2.0.0/Stat2Data/man/SandwichAnts.Rd | 37 Stat2Data-2.0.0/Stat2Data/man/SeaIce.Rd |only Stat2Data-2.0.0/Stat2Data/man/SeaSlugs.Rd | 3 Stat2Data-2.0.0/Stat2Data/man/SleepingShrews.Rd |only Stat2Data-2.0.0/Stat2Data/man/Sparrows.Rd | 3 Stat2Data-2.0.0/Stat2Data/man/SpeciesArea.Rd | 8 Stat2Data-2.0.0/Stat2Data/man/Speed.Rd | 11 Stat2Data-2.0.0/Stat2Data/man/Stat2Data-package.Rd | 11 Stat2Data-2.0.0/Stat2Data/man/SugarEthanol.Rd |only Stat2Data-2.0.0/Stat2Data/man/SuicideChina.Rd |only Stat2Data-2.0.0/Stat2Data/man/Swahili.Rd | 4 Stat2Data-2.0.0/Stat2Data/man/TMS.Rd | 9 Stat2Data-2.0.0/Stat2Data/man/Tadpoles.Rd |only Stat2Data-2.0.0/Stat2Data/man/TechStocks.Rd |only Stat2Data-2.0.0/Stat2Data/man/TeenPregnancy.Rd |only Stat2Data-2.0.0/Stat2Data/man/TextPrices.Rd | 2 Stat2Data-2.0.0/Stat2Data/man/ThomasConfirmation.Rd |only Stat2Data-2.0.0/Stat2Data/man/ThreeCars.Rd | 8 Stat2Data-2.0.0/Stat2Data/man/ThreeCars2017.Rd |only Stat2Data-2.0.0/Stat2Data/man/TipJoke.Rd | 11 Stat2Data-2.0.0/Stat2Data/man/Titanic.Rd | 7 Stat2Data-2.0.0/Stat2Data/man/TomlinsonRush.Rd | 11 Stat2Data-2.0.0/Stat2Data/man/TukeyNonaddPlot.Rd |only Stat2Data-2.0.0/Stat2Data/man/TwinsLungs.Rd | 15 Stat2Data-2.0.0/Stat2Data/man/USstamps.Rd | 7 Stat2Data-2.0.0/Stat2Data/man/Undoing.Rd |only Stat2Data-2.0.0/Stat2Data/man/VisualVerbal.Rd |only Stat2Data-2.0.0/Stat2Data/man/Volts.Rd | 7 Stat2Data-2.0.0/Stat2Data/man/WalkTheDogs.Rd |only Stat2Data-2.0.0/Stat2Data/man/WalkingBabies.Rd | 9 Stat2Data-2.0.0/Stat2Data/man/WeightLossIncentive.Rd | 3 Stat2Data-2.0.0/Stat2Data/man/WeightLossIncentive4.Rd | 3 Stat2Data-2.0.0/Stat2Data/man/WeightLossIncentive7.Rd | 5 Stat2Data-2.0.0/Stat2Data/man/Whickham2.Rd |only Stat2Data-2.0.0/Stat2Data/man/WordMemory.Rd | 5 Stat2Data-2.0.0/Stat2Data/man/WordsWithFriends.Rd |only Stat2Data-2.0.0/Stat2Data/man/Wrinkle.Rd |only Stat2Data-2.0.0/Stat2Data/man/YouthRisk.Rd |only Stat2Data-2.0.0/Stat2Data/man/YouthRisk2007.Rd | 11 Stat2Data-2.0.0/Stat2Data/man/YouthRisk2009.Rd | 23 Stat2Data-2.0.0/Stat2Data/man/Zimmerman.Rd |only Stat2Data-2.0.0/Stat2Data/man/cooksplot.Rd |only Stat2Data-2.0.0/Stat2Data/man/emplogitplot1.Rd |only Stat2Data-2.0.0/Stat2Data/man/emplogitplot2.Rd |only Stat2Data-2.0.0/Stat2Data/man/sluacf.Rd |only 437 files changed, 1047 insertions(+), 882 deletions(-)
Title: Spatial Forecast Verification
Description: Spatial forecast verification arose from verifying high-resolution forecasts, where coarser-resolution models generally are favored even when a human forecaster finds the higher-resolution model to be considerably better. Most newly proposed methods, which largely come from image analysis, computer vision, and similar, are available, with more on the way.
Author: Eric Gilleland <EricG@ucar.edu>
Maintainer: Eric Gilleland <EricG@ucar.edu>
Diff between SpatialVx versions 0.6-3 dated 2018-07-04 and 0.6-4 dated 2019-01-04
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- R/Geom.R | 8 ++++---- 3 files changed, 10 insertions(+), 10 deletions(-)
Title: Quantum Entanglement of Bipartite System
Description: It computes the Schmidt decomposition of bipartite quantum systems, discrete or continuous,
and their respective entanglement metrics. See Artur Ekert, Peter L. Knight (1995) <doi:10.1119/1.17904>
for more details.
Author: Kwan-Yuet Ho [aut, cre]
Maintainer: Kwan-Yuet Ho <stephenhky@yahoo.com.hk>
Diff between RQEntangle versions 0.1.2 dated 2018-07-31 and 0.1.3 dated 2019-01-04
DESCRIPTION | 6 +++--- MD5 | 18 +++++++++--------- README.md | 4 +++- build/vignette.rds |binary inst/doc/CoupledHarmonics.Rmd | 2 +- inst/doc/CoupledHarmonics.html | 13 +++++-------- inst/doc/CoupledHarmonics2.Rmd | 2 +- inst/doc/CoupledHarmonics2.html | 11 ++++------- vignettes/CoupledHarmonics.Rmd | 2 +- vignettes/CoupledHarmonics2.Rmd | 2 +- 10 files changed, 28 insertions(+), 32 deletions(-)
Title: Polyhedra Database
Description: A polyhedra database scraped from various sources as R6 objects and 'rgl' visualizing capabilities.
Author: Alejandro Baranek [aut, com, cre, cph],
Leonardo Belen [aut, com, cph]
Maintainer: Alejandro Baranek <abaranek@dc.uba.ar>
Diff between Rpolyhedra versions 0.3.0 dated 2018-11-30 and 0.4.0 dated 2019-01-04
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| 5 Rpolyhedra-0.4.0/Rpolyhedra/tests/testthat.R | 7 Rpolyhedra-0.4.0/Rpolyhedra/tests/testthat/test_db_lib.R |only Rpolyhedra-0.4.0/Rpolyhedra/tests/testthat/test_env_lib.R |only Rpolyhedra-0.4.0/Rpolyhedra/tests/testthat/test_ledger_lib.R |only Rpolyhedra-0.4.0/Rpolyhedra/tests/testthat/test_package_lib.R |only Rpolyhedra-0.4.0/Rpolyhedra/tests/testthat/test_polyhedra_lib.R |only Rpolyhedra-0.4.0/Rpolyhedra/tests/testthat/test_serialization_lib.R |only Rpolyhedra-0.4.0/Rpolyhedra/vignettes/Rpolyhedra.Rmd | 48 206 files changed, 4891 insertions(+), 1408 deletions(-)
Title: Spatial Objects of the Czech Republic
Description: Administrative regions, rivers and water bodies of the Czech Republic.
Author: Jindra Lacko
Maintainer: Jindra Lacko <jindra.lacko@gmail.com>
Diff between RCzechia versions 1.3.1 dated 2018-10-30 and 1.3.2 dated 2019-01-04
DESCRIPTION | 14 +++++++------- MD5 | 14 +++++++------- NEWS.md | 3 +++ build/vignette.rds |binary inst/doc/vignette.R | 8 +++++--- inst/doc/vignette.Rmd | 8 +++++--- inst/doc/vignette.html | 42 ++++++++++++++++++++++++++++++++---------- vignettes/vignette.Rmd | 8 +++++--- 8 files changed, 64 insertions(+), 33 deletions(-)
Title: Header-Only C++ Mathematical Optimization Library for
'Armadillo'
Description: 'Ensmallen' is a templated C++ mathematical optimization library
(by the 'MLPACK' team) that provides a simple set of abstractions for writing an
objective function to optimize. Provided within are various standard and
cutting-edge optimizers that include full-batch gradient descent techniques,
small-batch techniques, gradient-free optimizers, and constrained optimization.
The 'RcppEnsmallen' package includes the header files from the 'Ensmallen' library
and pairs the appropriate header files from 'armadillo' through the
'RcppArmadillo' package. Therefore, users do not need to install 'Ensmallen' nor
'Armadillo' to use 'RcppEnsmallen'. Note that 'Ensmallen' is licensed under
3-Clause BSD, 'Armadillo' starting from 7.800.0 is licensed under Apache License 2,
'RcppArmadillo' (the 'Rcpp' bindings/bridge to 'Armadillo') is licensed under
the GNU GPL version 2 or later. Thus, 'RcppEnsmallen' is also licensed under
similar terms. Note that 'Ensmallen' requires a compiler that supports
'C++11' and 'Armadillo' 6.500 or later.
Author: James Joseph Balamuta [aut, cre, cph]
(<https://orcid.org/0000-0003-2826-8458>),
Dirk Eddelbuettel [aut, cph] (<https://orcid.org/0000-0001-6419-907X>)
Maintainer: James Joseph Balamuta <balamut2@illinois.edu>
Diff between RcppEnsmallen versions 0.1.11.1.1 dated 2018-11-30 and 0.1.12.0.1 dated 2019-01-04
RcppEnsmallen-0.1.11.1.1/RcppEnsmallen/inst/include/ensmallen_bits/line_search |only RcppEnsmallen-0.1.11.1.1/RcppEnsmallen/inst/include/ensmallen_bits/proximal |only RcppEnsmallen-0.1.12.0.1/RcppEnsmallen/ChangeLog | 24 ++ RcppEnsmallen-0.1.12.0.1/RcppEnsmallen/DESCRIPTION | 8 RcppEnsmallen-0.1.12.0.1/RcppEnsmallen/MD5 | 106 +++++----- RcppEnsmallen-0.1.12.0.1/RcppEnsmallen/NEWS.md | 13 + RcppEnsmallen-0.1.12.0.1/RcppEnsmallen/inst/CITATION | 14 - RcppEnsmallen-0.1.12.0.1/RcppEnsmallen/inst/include/ensmallen.hpp | 8 RcppEnsmallen-0.1.12.0.1/RcppEnsmallen/inst/include/ensmallen_bits/ada_delta/ada_delta.hpp | 34 +-- RcppEnsmallen-0.1.12.0.1/RcppEnsmallen/inst/include/ensmallen_bits/ada_delta/ada_delta_impl.hpp | 7 RcppEnsmallen-0.1.12.0.1/RcppEnsmallen/inst/include/ensmallen_bits/ada_grad/ada_grad.hpp | 34 +-- RcppEnsmallen-0.1.12.0.1/RcppEnsmallen/inst/include/ensmallen_bits/ada_grad/ada_grad_impl.hpp | 7 RcppEnsmallen-0.1.12.0.1/RcppEnsmallen/inst/include/ensmallen_bits/adam/adam.hpp | 35 +-- RcppEnsmallen-0.1.12.0.1/RcppEnsmallen/inst/include/ensmallen_bits/adam/adam_impl.hpp | 7 RcppEnsmallen-0.1.12.0.1/RcppEnsmallen/inst/include/ensmallen_bits/aug_lagrangian/aug_lagrangian.hpp | 17 - RcppEnsmallen-0.1.12.0.1/RcppEnsmallen/inst/include/ensmallen_bits/bigbatch_sgd/bigbatch_sgd.hpp | 20 - RcppEnsmallen-0.1.12.0.1/RcppEnsmallen/inst/include/ensmallen_bits/cmaes/cmaes.hpp | 18 - RcppEnsmallen-0.1.12.0.1/RcppEnsmallen/inst/include/ensmallen_bits/cne/cne.hpp | 7 RcppEnsmallen-0.1.12.0.1/RcppEnsmallen/inst/include/ensmallen_bits/ens_version.hpp | 6 RcppEnsmallen-0.1.12.0.1/RcppEnsmallen/inst/include/ensmallen_bits/eve |only RcppEnsmallen-0.1.12.0.1/RcppEnsmallen/inst/include/ensmallen_bits/ftml |only RcppEnsmallen-0.1.12.0.1/RcppEnsmallen/inst/include/ensmallen_bits/fw/atoms.hpp | 2 RcppEnsmallen-0.1.12.0.1/RcppEnsmallen/inst/include/ensmallen_bits/fw/frank_wolfe.hpp | 4 RcppEnsmallen-0.1.12.0.1/RcppEnsmallen/inst/include/ensmallen_bits/fw/line_search |only RcppEnsmallen-0.1.12.0.1/RcppEnsmallen/inst/include/ensmallen_bits/fw/proximal |only RcppEnsmallen-0.1.12.0.1/RcppEnsmallen/inst/include/ensmallen_bits/fw/update_linesearch.hpp | 2 RcppEnsmallen-0.1.12.0.1/RcppEnsmallen/inst/include/ensmallen_bits/gradient_descent/gradient_descent.hpp | 9 RcppEnsmallen-0.1.12.0.1/RcppEnsmallen/inst/include/ensmallen_bits/grid_search/grid_search.hpp | 7 RcppEnsmallen-0.1.12.0.1/RcppEnsmallen/inst/include/ensmallen_bits/iqn/iqn.hpp | 18 - RcppEnsmallen-0.1.12.0.1/RcppEnsmallen/inst/include/ensmallen_bits/katyusha/katyusha.hpp | 22 -- RcppEnsmallen-0.1.12.0.1/RcppEnsmallen/inst/include/ensmallen_bits/lbfgs/lbfgs.hpp | 17 - RcppEnsmallen-0.1.12.0.1/RcppEnsmallen/inst/include/ensmallen_bits/padam |only RcppEnsmallen-0.1.12.0.1/RcppEnsmallen/inst/include/ensmallen_bits/parallel_sgd/parallel_sgd.hpp | 22 -- RcppEnsmallen-0.1.12.0.1/RcppEnsmallen/inst/include/ensmallen_bits/rmsprop/rmsprop.hpp | 38 +-- RcppEnsmallen-0.1.12.0.1/RcppEnsmallen/inst/include/ensmallen_bits/sa/sa.hpp | 11 - RcppEnsmallen-0.1.12.0.1/RcppEnsmallen/inst/include/ensmallen_bits/sarah/sarah.hpp | 22 -- RcppEnsmallen-0.1.12.0.1/RcppEnsmallen/inst/include/ensmallen_bits/scd/scd.hpp | 19 - RcppEnsmallen-0.1.12.0.1/RcppEnsmallen/inst/include/ensmallen_bits/sdp/lrsdp.hpp | 4 RcppEnsmallen-0.1.12.0.1/RcppEnsmallen/inst/include/ensmallen_bits/sdp/primal_dual.hpp | 9 RcppEnsmallen-0.1.12.0.1/RcppEnsmallen/inst/include/ensmallen_bits/sgd/sgd.hpp | 26 -- RcppEnsmallen-0.1.12.0.1/RcppEnsmallen/inst/include/ensmallen_bits/sgd/sgd_impl.hpp | 8 RcppEnsmallen-0.1.12.0.1/RcppEnsmallen/inst/include/ensmallen_bits/sgdr/sgdr.hpp | 16 + RcppEnsmallen-0.1.12.0.1/RcppEnsmallen/inst/include/ensmallen_bits/sgdr/sgdr_impl.hpp | 6 RcppEnsmallen-0.1.12.0.1/RcppEnsmallen/inst/include/ensmallen_bits/sgdr/snapshot_sgdr.hpp | 21 + RcppEnsmallen-0.1.12.0.1/RcppEnsmallen/inst/include/ensmallen_bits/sgdr/snapshot_sgdr_impl.hpp | 6 RcppEnsmallen-0.1.12.0.1/RcppEnsmallen/inst/include/ensmallen_bits/smorms3/smorms3.hpp | 35 +-- RcppEnsmallen-0.1.12.0.1/RcppEnsmallen/inst/include/ensmallen_bits/smorms3/smorms3_impl.hpp | 7 RcppEnsmallen-0.1.12.0.1/RcppEnsmallen/inst/include/ensmallen_bits/spalera_sgd/spalera_sgd.hpp | 18 - RcppEnsmallen-0.1.12.0.1/RcppEnsmallen/inst/include/ensmallen_bits/svrg/svrg.hpp | 22 -- RcppEnsmallen-0.1.12.0.1/RcppEnsmallen/inst/include/ensmallen_bits/swats |only RcppEnsmallen-0.1.12.0.1/RcppEnsmallen/inst/include/ensmallen_bits/wn_grad/wn_grad.hpp | 36 +-- RcppEnsmallen-0.1.12.0.1/RcppEnsmallen/inst/include/ensmallen_bits/wn_grad/wn_grad_impl.hpp | 9 RcppEnsmallen-0.1.12.0.1/RcppEnsmallen/inst/include/ensmallen_bits/wn_grad/wn_grad_update.hpp | 2 53 files changed, 353 insertions(+), 430 deletions(-)
Title: A Future API for Parallel and Distributed Processing using
BatchJobs
Description: Implementation of the Future API on top of the 'BatchJobs' package.
This allows you to process futures, as defined by the 'future' package,
in parallel out of the box, not only on your local machine or ad-hoc
cluster of machines, but also via high-performance compute ('HPC') job
schedulers such as 'LSF', 'OpenLava', 'Slurm', 'SGE', and 'TORQUE' / 'PBS',
e.g. 'y <- future.apply::future_lapply(files, FUN = process)'.
NOTE: The 'BatchJobs' package is deprecated in favor of the 'batchtools'
package. Because of this, it is recommended to use the 'future.batchtools'
package instead of this package.
Author: Henrik Bengtsson [aut, cre, cph]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between future.BatchJobs versions 0.16.0 dated 2018-07-10 and 0.16.1 dated 2019-01-04
DESCRIPTION | 10 - MD5 | 60 +++++----- NAMESPACE | 2 NEWS | 218 ++++++++++++++++++++------------------ R/BatchJobsFuture-class.R | 17 +- R/utils.R | 14 ++ inst/WORDLIST | 8 + inst/doc/future.BatchJobs.html | 4 inst/doc/future.BatchJobs.md.rsp | 4 man/BatchJobsFuture.Rd | 9 - man/batchjobs_custom.Rd | 5 man/batchjobs_local.Rd | 4 man/batchjobs_multicore.Rd | 4 man/delete.BatchJobsFuture.Rd | 4 tests/BatchJobsFuture.R | 9 - tests/BatchJobsFutureError.R | 4 tests/batchjobs_interactive.R | 8 - tests/batchjobs_job.delay.R | 5 tests/batchjobs_local.R | 8 - tests/batchjobs_multicore.R | 167 +++++++++++++++-------------- tests/demo.R | 11 + tests/dotdotdot.R | 8 + tests/future,labels.R | 4 tests/future,lazy.R |only tests/globals,formulas.R | 7 - tests/globals,manual.R | 6 - tests/globals,subassignment.R | 4 tests/globals,tricky.R | 4 tests/incl/start,load-only.R | 9 + tests/stdout.R |only tests/zzz,future_lapply.R | 198 +++++++++++++++++----------------- vignettes/future.BatchJobs.md.rsp | 4 32 files changed, 452 insertions(+), 367 deletions(-)
More information about future.BatchJobs at CRAN
Permanent link
Title: Track User-Defined Environment Names
Description: Set of functions to keep track of user-defined environment names
(which cannot be retrieved with the built-in function environmentName()).
The package also provides functionality to search for objects in environments,
deal with function calling chains, and retrieve an object's
memory address.
Author: Daniel Mastropietro
Maintainer: Daniel Mastropietro <mastropi@uwalumni.com>
Diff between envnames versions 0.3.0 dated 2018-07-22 and 0.4.0 dated 2019-01-04
envnames-0.3.0/envnames/man/extract_last_member.Rd |only envnames-0.3.0/envnames/man/get_envs.Rd |only envnames-0.4.0/envnames/DESCRIPTION | 31 envnames-0.4.0/envnames/MD5 | 127 envnames-0.4.0/envnames/NAMESPACE | 1 envnames-0.4.0/envnames/NEWS.md |only envnames-0.4.0/envnames/R/environment_name.r | 18 envnames-0.4.0/envnames/R/functions.r | 797 + envnames-0.4.0/envnames/R/get_env_names.r | 725 - envnames-0.4.0/envnames/R/get_fun_calling.r | 5 envnames-0.4.0/envnames/R/get_fun_calling_chain.r | 6 envnames-0.4.0/envnames/R/get_fun_env.r | 35 envnames-0.4.0/envnames/R/get_fun_name.r | 13 envnames-0.4.0/envnames/R/get_obj_address.r | 25 envnames-0.4.0/envnames/R/get_obj_name.r | 184 envnames-0.4.0/envnames/R/get_obj_value.r | 102 envnames-0.4.0/envnames/R/global_definitions.r | 19 envnames-0.4.0/envnames/R/obj_find.r | 97 envnames-0.4.0/envnames/README.md | 8 envnames-0.4.0/envnames/build/vignette.rds |binary envnames-0.4.0/envnames/inst/doc/envnames.R | 228 envnames-0.4.0/envnames/inst/doc/envnames.Rmd | 561 + envnames-0.4.0/envnames/inst/doc/envnames.pdf | 4149 +++++----- envnames-0.4.0/envnames/man/address.Rd | 1 envnames-0.4.0/envnames/man/check_environment.Rd | 6 envnames-0.4.0/envnames/man/check_object_exists.Rd | 3 envnames-0.4.0/envnames/man/check_object_with_path.Rd | 1 envnames-0.4.0/envnames/man/clean_up_matching_environments.Rd | 3 envnames-0.4.0/envnames/man/collapse_root_and_member.Rd |only envnames-0.4.0/envnames/man/crawl_envs.Rd | 45 envnames-0.4.0/envnames/man/crawl_envs_in_env.Rd | 13 envnames-0.4.0/envnames/man/destandardize_env_name.Rd | 10 envnames-0.4.0/envnames/man/environment_name.Rd | 3 envnames-0.4.0/envnames/man/envnames-package.Rd | 6 envnames-0.4.0/envnames/man/extract_root_and_last_member.Rd |only envnames-0.4.0/envnames/man/get_env_names.Rd | 28 envnames-0.4.0/envnames/man/get_environment_name.Rd |only envnames-0.4.0/envnames/man/get_envs_in_env.Rd |only envnames-0.4.0/envnames/man/get_fun_calling.Rd | 6 envnames-0.4.0/envnames/man/get_fun_calling_chain.Rd | 1 envnames-0.4.0/envnames/man/get_fun_env.Rd | 8 envnames-0.4.0/envnames/man/get_fun_name.Rd | 12 envnames-0.4.0/envnames/man/get_namespace_addresses.Rd | 3 envnames-0.4.0/envnames/man/get_namespace_names.Rd |only envnames-0.4.0/envnames/man/get_obj_address.Rd | 1 envnames-0.4.0/envnames/man/get_obj_addresses_from_obj_names.Rd | 9 envnames-0.4.0/envnames/man/get_obj_name.Rd | 154 envnames-0.4.0/envnames/man/get_obj_value.Rd | 107 envnames-0.4.0/envnames/man/get_objects_in_package.Rd | 1 envnames-0.4.0/envnames/man/get_searchpath_environment_addresses.Rd |only envnames-0.4.0/envnames/man/get_user_environment_names_in_env.Rd |only envnames-0.4.0/envnames/man/get_user_environment_names_in_search_path.Rd |only envnames-0.4.0/envnames/man/get_user_environments_in_user_envs_recursively.Rd |only envnames-0.4.0/envnames/man/is_logical.Rd | 7 envnames-0.4.0/envnames/man/is_memory_address.Rd | 3 envnames-0.4.0/envnames/man/is_null_or_na.Rd | 5 envnames-0.4.0/envnames/man/is_string.Rd | 1 envnames-0.4.0/envnames/man/obj_find.Rd | 1 envnames-0.4.0/envnames/man/parse_memory_address.Rd | 1 envnames-0.4.0/envnames/man/reset_option_warn.Rd |only envnames-0.4.0/envnames/man/set_option_warn_to_nowarning.Rd |only envnames-0.4.0/envnames/man/standardize_env_name.Rd | 20 envnames-0.4.0/envnames/man/testenv.Rd |only envnames-0.4.0/envnames/man/unlist_with_names.Rd | 1 envnames-0.4.0/envnames/tests/testthat/test-environment_name.r | 149 envnames-0.4.0/envnames/tests/testthat/test-functions.r | 36 envnames-0.4.0/envnames/tests/testthat/test-get_env_names.r | 230 envnames-0.4.0/envnames/tests/testthat/test-get_fun_calling_chain.r | 41 envnames-0.4.0/envnames/tests/testthat/test-get_obj_name.r | 338 envnames-0.4.0/envnames/tests/testthat/test-get_obj_value.r | 154 envnames-0.4.0/envnames/tests/testthat/test-obj_find.r | 261 envnames-0.4.0/envnames/vignettes/envnames.Rmd | 561 + 72 files changed, 5992 insertions(+), 3369 deletions(-)
Title: Cox Proportional Hazards Regression for Right Truncated Data
Description: Fits Cox regression based on retrospectively ascertained times-to-event. The method uses Inverse-Probability-Weighting estimating equations.
Author: Bella Vakulenko-Lagun
Maintainer: Bella Vakulenko-Lagun <bella.vakulenko-lagun@mail.huji.ac.il>
Diff between coxrt versions 1.0.0 dated 2018-10-07 and 1.0.1 dated 2019-01-04
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ inst/doc/coxrt-vignette.Rmd | 2 +- inst/doc/coxrt-vignette.html | 10 +++++----- src/RT_IPW_functions.cpp | 8 ++++---- vignettes/coxrt-vignette.Rmd | 2 +- vignettes/references.bib | 2 +- 7 files changed, 22 insertions(+), 22 deletions(-)
Title: Simulation and Analysis Tools for Clinical Dose Response
Modeling
Description: Bayesian and ML Emax model fitting, graphics and simulation for clinical dose
response. The summary data from the dose response meta-analyses in
Thomas, Sweeney, and Somayaji (2014) <doi:10.1080/19466315.2014.924876> and
Thomas and Roy (2016) <doi:10.1080/19466315.2016.1256229> are included
in the package. The prior distributions for the Bayesian analyses default to
the posterior predictive distributions derived from these references.
Author: Neal Thomas [aut, cre] (<https://orcid.org/0000-0002-1915-8487>),
Jing Wu [aut]
Maintainer: Neal Thomas <snthomas99@gmail.com>
Diff between clinDR versions 1.8 dated 2018-05-06 and 1.9 dated 2019-01-04
clinDR-1.8/clinDR/INDEX |only clinDR-1.8/clinDR/inst/models/modelbin3.stan |only clinDR-1.8/clinDR/inst/models/modelbin4.stan |only clinDR-1.8/clinDR/inst/models/modelcont3.stan |only clinDR-1.8/clinDR/inst/models/modelcont3NoPbo.stan |only clinDR-1.8/clinDR/inst/models/modelcont4.stan |only clinDR-1.8/clinDR/inst/models/modelcont4NoPbo.stan |only clinDR-1.9/clinDR/DESCRIPTION | 8 clinDR-1.9/clinDR/MD5 | 170 +-- clinDR-1.9/clinDR/NAMESPACE | 4 clinDR-1.9/clinDR/R/Brextract.R | 2 clinDR-1.9/clinDR/R/FixedMean.R | 1 clinDR-1.9/clinDR/R/SeEmax.R | 222 ++-- clinDR-1.9/clinDR/R/checkMonoEmax.R | 137 +- clinDR-1.9/clinDR/R/compileStanModels.R | 55 - clinDR-1.9/clinDR/R/emaxsimB.R | 5 clinDR-1.9/clinDR/R/fitEmax.R | 354 ++++--- clinDR-1.9/clinDR/R/fitEmaxB.R | 264 +++-- clinDR-1.9/clinDR/R/generic.R | 16 clinDR-1.9/clinDR/R/nllogis.R | 70 - clinDR-1.9/clinDR/R/plot.fitEmax.R | 15 clinDR-1.9/clinDR/R/predict.emaxsimB.R | 11 clinDR-1.9/clinDR/R/predict.emaxsimobj.R | 44 clinDR-1.9/clinDR/R/predict.fitEmax.R | 72 - clinDR-1.9/clinDR/R/predict.fitEmaxB.R | 37 clinDR-1.9/clinDR/R/print.emaxsim.R | 2 clinDR-1.9/clinDR/R/print.emaxsimB.R | 2 clinDR-1.9/clinDR/R/print.emaxsimobj.R | 2 clinDR-1.9/clinDR/R/selEstan.R | 18 clinDR-1.9/clinDR/R/showStanModels.R |only clinDR-1.9/clinDR/R/startEmax.R | 38 clinDR-1.9/clinDR/R/summary.emaxsim.R | 16 clinDR-1.9/clinDR/R/summary.emaxsimB.R | 10 clinDR-1.9/clinDR/inst/NEWS | 11 clinDR-1.9/clinDR/inst/models/basemodel.stan |only clinDR-1.9/clinDR/inst/tests/extraGraphics/pdfoutput/output.densityplot_new.pdf |binary clinDR-1.9/clinDR/inst/tests/extraGraphics/pdfoutput/output.densityplot_old.pdf |binary clinDR-1.9/clinDR/inst/tests/extraGraphics/pdfoutput/output.emaxsimBobj_new.pdf |binary clinDR-1.9/clinDR/inst/tests/extraGraphics/pdfoutput/output.emaxsimBobj_old.pdf |binary clinDR-1.9/clinDR/inst/tests/extraGraphics/pdfoutput/output.emaxsimobj_new.pdf |binary clinDR-1.9/clinDR/inst/tests/extraGraphics/pdfoutput/output.emaxsimobj_old.pdf |binary clinDR-1.9/clinDR/inst/tests/extraGraphics/pdfoutput/output.fitEmaxB_new.pdf |binary clinDR-1.9/clinDR/inst/tests/extraGraphics/pdfoutput/output.fitEmaxB_old.pdf |binary clinDR-1.9/clinDR/inst/tests/extraGraphics/pdfoutput/output.fitEmax_new.pdf |binary clinDR-1.9/clinDR/inst/tests/extraGraphics/pdfoutput/output.fitEmax_old.pdf |binary clinDR-1.9/clinDR/inst/tests/extraGraphics/pdfoutput/output.plotB_new.pdf |binary clinDR-1.9/clinDR/inst/tests/extraGraphics/pdfoutput/output.plotB_old.pdf |binary clinDR-1.9/clinDR/inst/tests/extraGraphics/pdfoutput/output.plotD_new.pdf |binary clinDR-1.9/clinDR/inst/tests/extraGraphics/pdfoutput/output.plotD_old.pdf |binary clinDR-1.9/clinDR/inst/tests/extraGraphics/test.plot.fitEmax.R | 77 + clinDR-1.9/clinDR/inst/tests/extraGraphics/test.plot.fitEmaxB.R | 91 + clinDR-1.9/clinDR/inst/tests/test.checkMonoEmax.R | 131 ++ clinDR-1.9/clinDR/inst/tests/test.emaxsim.R | 8 clinDR-1.9/clinDR/inst/tests/test.emaxsimB.R | 4 clinDR-1.9/clinDR/inst/tests/test.fitEmax.R | 501 ++++++++++ clinDR-1.9/clinDR/inst/tests/test.fitEmaxB.R | 394 +++++++ clinDR-1.9/clinDR/man/DRDensityPlot.Rd | 2 clinDR-1.9/clinDR/man/RandEmax.Rd | 16 clinDR-1.9/clinDR/man/SeEmax.Rd | 28 clinDR-1.9/clinDR/man/checkMonoEmax.Rd | 16 clinDR-1.9/clinDR/man/clinDR-package.Rd | 2 clinDR-1.9/clinDR/man/coef.Rd | 4 clinDR-1.9/clinDR/man/compileStanModels.Rd | 7 clinDR-1.9/clinDR/man/emaxalt.Rd | 2 clinDR-1.9/clinDR/man/emaxsim.Rd | 4 clinDR-1.9/clinDR/man/emaxsimB.Rd | 11 clinDR-1.9/clinDR/man/fitEmax.Rd | 20 clinDR-1.9/clinDR/man/fitEmaxB.Rd | 16 clinDR-1.9/clinDR/man/mcmc.control.Rd | 4 clinDR-1.9/clinDR/man/nllogis.Rd | 6 clinDR-1.9/clinDR/man/plot.emaxsimBobj.Rd | 6 clinDR-1.9/clinDR/man/plot.fitEmax.Rd | 8 clinDR-1.9/clinDR/man/plot.fitEmaxB.Rd | 50 clinDR-1.9/clinDR/man/plot.plotB.Rd | 22 clinDR-1.9/clinDR/man/plotB.Rd | 9 clinDR-1.9/clinDR/man/plotD.Rd | 2 clinDR-1.9/clinDR/man/predict.emaxsim.Rd | 5 clinDR-1.9/clinDR/man/predict.emaxsimB.Rd | 3 clinDR-1.9/clinDR/man/predict.emaxsimobj.Rd | 6 clinDR-1.9/clinDR/man/predict.fitEmax.Rd | 21 clinDR-1.9/clinDR/man/predict.fitEmaxB.Rd | 25 clinDR-1.9/clinDR/man/print.emaxsim.Rd | 8 clinDR-1.9/clinDR/man/print.emaxsimB.Rd | 9 clinDR-1.9/clinDR/man/print.emaxsimBobj.Rd | 3 clinDR-1.9/clinDR/man/print.emaxsimobj.Rd | 120 +- clinDR-1.9/clinDR/man/prior.control.Rd | 17 clinDR-1.9/clinDR/man/selEstan.Rd | 17 clinDR-1.9/clinDR/man/showStanModels.Rd |only clinDR-1.9/clinDR/man/sigma.Rd | 4 clinDR-1.9/clinDR/man/startEmax.Rd | 2 clinDR-1.9/clinDR/man/summary.emaxsimB.Rd | 2 91 files changed, 2378 insertions(+), 891 deletions(-)
Title: Bayesian Methods for Image Segmentation using a Potts Model
Description: Various algorithms for segmentation of 2D and 3D images, such
as computed tomography and satellite remote sensing. This package implements
Bayesian image analysis using the hidden Potts model with external field
prior of Moores et al. (2015) <doi:10.1016/j.csda.2014.12.001>.
Latent labels are sampled using chequerboard updating or Swendsen-Wang.
Algorithms for the smoothing parameter include pseudolikelihood, path sampling,
the exchange algorithm, approximate Bayesian computation (ABC-MCMC and ABC-SMC),
and the parametric functional approximate Bayesian (PFAB) algorithm. Refer to
<doi:10.1007/s11222-014-9525-6> and <doi:10.1214/18-BA1130> for further details.
Author: Matt Moores [aut, cre] (<https://orcid.org/0000-0003-4531-3572>),
Kerrie Mengersen [aut, ths] (<https://orcid.org/0000-0001-8625-9168>),
Dai Feng [ctb]
Maintainer: Matt Moores <mmoores@gmail.com>
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Title: Multinomial Sparse Group Lasso
Description: Multinomial logistic regression with sparse group lasso
penalty. Simultaneous feature selection and parameter
estimation for classification. Suitable for high dimensional
multiclass classification with many classes. The algorithm
computes the sparse group lasso penalized maximum likelihood
estimate. Use of parallel computing for cross validation and
subsampling is supported through the 'foreach' and 'doParallel'
packages. Development version is on GitHub, please report
package issues on GitHub.
Author: Martin Vincent [aut],
Niels Richard Hansen [ctb, cre]
Maintainer: Niels Richard Hansen <niels.r.hansen@math.ku.dk>
Diff between msgl versions 2.3.7 dated 2018-10-24 and 2.3.8 dated 2019-01-04
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Title: Estimating Controlled Direct Effects for Explaining Causal
Findings
Description: A set of functions to estimate the controlled direct effect of treatment fixing a potential mediator to a specific value. Implements the sequential g-estimation estimator described in Vansteelandt (2009) <doi:10.1097/EDE.0b013e3181b6f4c9> and Acharya, Blackwell, and Sen (2016) <doi:10.1017/S0003055416000216>.
Author: Matthew Blackwell [aut, cre],
Avidit Acharya [aut],
Maya Sen [aut],
Shiro Kuriwaki [aut],
Jacob Brown [aut]
Maintainer: Matthew Blackwell <mblackwell@gov.harvard.edu>
Diff between DirectEffects versions 0.1 dated 2018-02-26 and 0.2 dated 2019-01-04
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