Title: Interchange Tools for Multi-Parameter Spatiotemporal Data
Description: Formatting and structuring multi-parameter spatiotemporal data
is often a time-consuming task. This package offers functions and data structures
designed to easily organize and visualize these data for applications in geology,
paleolimnology, dendrochronology, and paleoclimate. See Dunnington and Spooner (2018)
<doi:10.1139/facets-2017-0026>.
Author: Dewey Dunnington [aut, cre] (<https://orcid.org/0000-0002-9415-4582>)
Maintainer: Dewey Dunnington <dewey@fishandwhistle.net>
Diff between mudata2 versions 1.0.4 dated 2018-12-08 and 1.0.5 dated 2019-01-11
DESCRIPTION | 15 +++++++++------ MD5 | 10 +++++----- inst/doc/mudata.html | 5 ++--- inst/doc/mudata_create.html | 4 ++-- tests/testthat/Rplots.pdf |binary tests/testthat/test_biplot.R | 3 ++- 6 files changed, 20 insertions(+), 17 deletions(-)
Title: Tools for Message Passing Between Processes
Description: Provides tools for passing messages between R processes.
Shiny Examples are provided showing how to perform useful tasks such as:
updating reactive values from within a future, progress bars for long running
async tasks, and interrupting async tasks based on user input.
Author: Ian E. Fellows
Maintainer: Ian E. Fellows <ian@fellstat.com>
Diff between ipc versions 0.1.1 dated 2018-11-05 and 0.1.2 dated 2019-01-11
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- R/consumer.R | 3 ++- R/text-file-source.R | 8 ++++---- build/vignette.rds |binary inst/doc/shinymp.html | 28 +++++++++++++++++++++++++--- 6 files changed, 39 insertions(+), 16 deletions(-)
Title: An R-Tool for Comprehensive Science Mapping Analysis
Description: Tool for quantitative research in scientometrics and bibliometrics.
It provides various routines for importing bibliographic data from SCOPUS (<http://scopus.com>),
Clarivate Analytics Web of Science (<http://www.webofknowledge.com/>), Cochrane Library (<http://www.cochranelibrary.com/>)
and PubMed (<https://www.ncbi.nlm.nih.gov/pubmed/>) databases, performing bibliometric analysis
and building networks for co-citation, coupling, scientific collaboration and co-word analysis.
Author: Massimo Aria [cre, aut],
Corrado Cuccurullo [aut]
Maintainer: Massimo Aria <aria@unina.it>
Diff between bibliometrix versions 2.0.2 dated 2018-11-16 and 2.1.0 dated 2019-01-11
DESCRIPTION | 8 MD5 | 83 +- NAMESPACE | 2 NEWS | 20 R/Hindex.R | 45 - R/authorProdOverTime.R |only R/bib2df.R |only R/biblioshiny.R | 1 R/bibtag.R |only R/bradford.R | 4 R/convert2df.R | 17 R/countries.R | 2 R/dominance.R | 43 - R/isi2df.R | 1 R/isibib2df.R | 111 -- R/networkPlot.R | 31 R/plot.bibliometrix.R | 4 R/plotThematicEvolution.R | 11 R/scopus2df.R | 86 -- R/summary.bibliometrix.R | 18 R/thematicEvolution.R | 15 R/thematicMap.R | 1 build/partial.rdb |binary data/bibtag.rda |only data/datalist | 1 inst/biblioshiny/server.R | 1494 ++++++++++++++++++++++++------------ inst/biblioshiny/ui.R | 895 +++++++++++++++------ inst/doc/bibliometrix-vignette.R | 16 inst/doc/bibliometrix-vignette.Rmd | 24 inst/doc/bibliometrix-vignette.html | 254 +++--- man/Hindex.Rd | 16 man/authorProdOverTime.Rd |only man/bib2df.Rd |only man/bibtag.Rd |only man/cochrane2df.Rd | 7 man/convert2df.Rd | 7 man/countries.Rd | 2 man/dominance.Rd | 5 man/isi2df.Rd | 7 man/isibib2df.Rd | 11 man/networkPlot.Rd | 2 man/plotThematicEvolution.Rd | 4 man/pubmed2df.Rd | 7 man/scopus2df.Rd | 7 vignettes/bibliometrix-vignette.Rmd | 24 vignettes/figures/cr1.png |binary 46 files changed, 2079 insertions(+), 1207 deletions(-)
Title: Functions for R Beginners
Description: Useful functions for R beginners, including hints for the arguments of the 'plot()' function, self-defined functions for error bars, user-customized pair plots and hist plots, enhanced linear regression figures, etc.. This package could be helpful to R experts as well.
Author: Peng Zhao
Maintainer: Peng Zhao <pzhao@pzhao.net>
Diff between beginr versions 0.1.3 dated 2018-06-12 and 0.1.4 dated 2019-01-11
DESCRIPTION | 10 +++++----- MD5 | 6 +++--- R/foo.R | 43 +++++++++++++++++++++++++++++++++---------- man/readdir.Rd | 13 ++++++++++--- 4 files changed, 51 insertions(+), 21 deletions(-)
Title: A Tool for Processing Steem Data
Description: Steem is a blockchain-based social media platform (see <https://en.wikipedia.org/wiki/Steemit>). The Steem social activity data are saved in the Steem blockchain, the SteemDB database, the SteemSQL database, and so on. 'steemr' is an R package that downloads the Steem data from the SteemDB and SteemSQL servers, re-organizes the data in a user-friendly way, and visualizes the data for further analysis.
Author: Peng Zhao <pzhao@pzhao.net>
Maintainer: Peng Zhao <pzhao@pzhao.net>
Diff between steemr versions 0.0.5 dated 2018-09-11 and 0.1.2 dated 2019-01-11
steemr-0.0.5/steemr/R/steemr.R |only steemr-0.0.5/steemr/README.md |only steemr-0.0.5/steemr/man/follower.Rd |only steemr-0.0.5/steemr/man/follower_df.Rd |only steemr-0.0.5/steemr/man/following.Rd |only steemr-0.0.5/steemr/man/id_info.Rd |only steemr-0.0.5/steemr/man/post_df.Rd |only steemr-0.0.5/steemr/man/post_id.Rd |only steemr-0.0.5/steemr/man/post_info.Rd |only steemr-0.0.5/steemr/man/post_links.Rd |only steemr-0.0.5/steemr/man/vote.Rd |only steemr-0.1.2/steemr/DESCRIPTION | 16 steemr-0.1.2/steemr/LICENSE | 597 +++++++++++++++++++++++++- steemr-0.1.2/steemr/MD5 | 92 +++- steemr-0.1.2/steemr/NAMESPACE | 87 +++ steemr-0.1.2/steemr/R/analysis.r |only steemr-0.1.2/steemr/R/build.r |only steemr-0.1.2/steemr/R/get.r |only steemr-0.1.2/steemr/R/import.r |only steemr-0.1.2/steemr/R/internal.r |only steemr-0.1.2/steemr/R/plot.r |only steemr-0.1.2/steemr/R/plothour.r |only steemr-0.1.2/steemr/R/shiny.r |only steemr-0.1.2/steemr/R/steemrdata.R |only steemr-0.1.2/steemr/inst |only steemr-0.1.2/steemr/man/accountCount.Rd |only steemr-0.1.2/steemr/man/acnsub.Rd |only steemr-0.1.2/steemr/man/adailyf.Rd |only steemr-0.1.2/steemr/man/avotenot.Rd |only steemr-0.1.2/steemr/man/avotep.Rd |only steemr-0.1.2/steemr/man/bblog.Rd |only steemr-0.1.2/steemr/man/bmd.Rd |only steemr-0.1.2/steemr/man/charsplit.Rd |only steemr-0.1.2/steemr/man/clear_title.Rd |only steemr-0.1.2/steemr/man/clearferfing.Rd |only steemr-0.1.2/steemr/man/gaccounts.Rd |only steemr-0.1.2/steemr/man/gblog.Rd |only steemr-0.1.2/steemr/man/gcner.Rd |only steemr-0.1.2/steemr/man/gcomments.Rd |only steemr-0.1.2/steemr/man/gdelegation.Rd |only steemr-0.1.2/steemr/man/getAccount.Rd |only steemr-0.1.2/steemr/man/getAccountVotes.Rd |only steemr-0.1.2/steemr/man/getBlog.Rd |only steemr-0.1.2/steemr/man/getComments.Rd |only steemr-0.1.2/steemr/man/getDelegation.Rd |only steemr-0.1.2/steemr/man/getNodes.Rd |only steemr-0.1.2/steemr/man/getPost.Rd |only steemr-0.1.2/steemr/man/getPostsByTag.Rd |only steemr-0.1.2/steemr/man/getReplies.Rd |only steemr-0.1.2/steemr/man/getSteemProperties.Rd |only steemr-0.1.2/steemr/man/getTransactions.Rd |only steemr-0.1.2/steemr/man/getTrending.Rd |only steemr-0.1.2/steemr/man/getWitnesses.Rd |only steemr-0.1.2/steemr/man/gfollow.Rd |only steemr-0.1.2/steemr/man/gfollower.Rd |only steemr-0.1.2/steemr/man/gfollowing.Rd |only steemr-0.1.2/steemr/man/gid.Rd |only steemr-0.1.2/steemr/man/gidpostl.Rd |only steemr-0.1.2/steemr/man/gidposts.Rd |only steemr-0.1.2/steemr/man/gpost.Rd |only steemr-0.1.2/steemr/man/gposts.Rd |only steemr-0.1.2/steemr/man/gspmv.Rd |only steemr-0.1.2/steemr/man/gur.Rd |only steemr-0.1.2/steemr/man/gvotep.Rd |only steemr-0.1.2/steemr/man/gvoter.Rd |only steemr-0.1.2/steemr/man/idlink.Rd | 11 steemr-0.1.2/steemr/man/pcner.Rd |only steemr-0.1.2/steemr/man/pdate.Rd |only steemr-0.1.2/steemr/man/phist.Rd |only steemr-0.1.2/steemr/man/phour.Rd |only steemr-0.1.2/steemr/man/repcalc.Rd |only steemr-0.1.2/steemr/man/scner.Rd |only steemr-0.1.2/steemr/man/scner_ui.Rd |only steemr-0.1.2/steemr/man/sfollow.Rd |only steemr-0.1.2/steemr/man/sfollow_server.Rd |only steemr-0.1.2/steemr/man/sfollow_ui.Rd |only steemr-0.1.2/steemr/man/skewness.Rd |only steemr-0.1.2/steemr/man/sposts.Rd |only steemr-0.1.2/steemr/man/sposts_server.Rd |only steemr-0.1.2/steemr/man/sposts_ui.Rd |only steemr-0.1.2/steemr/man/ssql.Rd |only steemr-0.1.2/steemr/man/tag_of_post.Rd |only steemr-0.1.2/steemr/man/unitconvert.Rd |only steemr-0.1.2/steemr/man/whale.Rd |only steemr-0.1.2/steemr/man/xatf.Rd |only 85 files changed, 763 insertions(+), 40 deletions(-)
Title: Datasets and Functions Relating to Star Trek
Description: Provides datasets related to the Star Trek fictional universe and functions for working with the data.
The package also provides access to real world datasets based on the televised series and other related licensed media productions.
It interfaces with the Star Trek API (STAPI) (<http://stapi.co/>),
Memory Alpha (<http://memory-alpha.wikia.com/>), and Memory Beta (<http://memory-beta.wikia.com/>)
to retrieve data, metadata and other information relating to Star Trek.
It also contains several local datasets covering a variety of topics.
The package also provides functions for working with data from other Star Trek-related
R data packages containing larger datasets not stored in 'rtrek'.
Author: Matthew Leonawicz [aut, cre] (<https://orcid.org/0000-0001-9452-2771>)
Maintainer: Matthew Leonawicz <matt_leonawicz@esource.com>
Diff between rtrek versions 0.1.0 dated 2018-06-06 and 0.2.0 dated 2019-01-11
rtrek-0.1.0/rtrek/data/stBooksWP.rda |only rtrek-0.1.0/rtrek/inst/doc/rr.Rmd |only rtrek-0.1.0/rtrek/inst/doc/rr.html |only rtrek-0.1.0/rtrek/man/stBooksWP.Rd |only rtrek-0.1.0/rtrek/man/st_book_series.Rd |only rtrek-0.1.0/rtrek/vignettes/rr.Rmd |only rtrek-0.2.0/rtrek/DESCRIPTION | 28 - rtrek-0.2.0/rtrek/MD5 | 84 ++- rtrek-0.2.0/rtrek/NAMESPACE | 13 rtrek-0.2.0/rtrek/NEWS.md | 23 + rtrek-0.2.0/rtrek/R/api.R | 32 + rtrek-0.2.0/rtrek/R/data.R | 100 +++- rtrek-0.2.0/rtrek/R/ma_support.R |only rtrek-0.2.0/rtrek/R/mb_support.R |only rtrek-0.2.0/rtrek/R/mb_timeline.R |only rtrek-0.2.0/rtrek/R/memory_alpha.R |only rtrek-0.2.0/rtrek/R/memory_beta.R |only rtrek-0.2.0/rtrek/R/novels.R | 12 rtrek-0.2.0/rtrek/R/rtrek.R | 20 rtrek-0.2.0/rtrek/R/sysdata.rda |binary rtrek-0.2.0/rtrek/R/tiles.R | 6 rtrek-0.2.0/rtrek/README.md | 120 ++++- rtrek-0.2.0/rtrek/build/vignette.rds |binary rtrek-0.2.0/rtrek/data/stBooks.rda |binary rtrek-0.2.0/rtrek/data/stBooksWiki.rda |only rtrek-0.2.0/rtrek/data/stSeries.rda |only rtrek-0.2.0/rtrek/data/stTiles.rda |binary rtrek-0.2.0/rtrek/data/tlBooks.rda |only rtrek-0.2.0/rtrek/data/tlEvents.rda |only rtrek-0.2.0/rtrek/data/tlFootnotes.rda |only rtrek-0.2.0/rtrek/inst/doc/rtrek.R | 30 + rtrek-0.2.0/rtrek/inst/doc/rtrek.Rmd | 127 +++++ rtrek-0.2.0/rtrek/inst/doc/rtrek.html | 405 +++++++++++++------ rtrek-0.2.0/rtrek/man/figures |only rtrek-0.2.0/rtrek/man/has_internet.Rd |only rtrek-0.2.0/rtrek/man/ma_article.Rd |only rtrek-0.2.0/rtrek/man/ma_image.Rd |only rtrek-0.2.0/rtrek/man/ma_search.Rd |only rtrek-0.2.0/rtrek/man/mb_article.Rd |only rtrek-0.2.0/rtrek/man/mb_image.Rd |only rtrek-0.2.0/rtrek/man/mb_search.Rd |only rtrek-0.2.0/rtrek/man/mb_timeline.Rd |only rtrek-0.2.0/rtrek/man/memory_alpha.Rd |only rtrek-0.2.0/rtrek/man/memory_beta.Rd |only rtrek-0.2.0/rtrek/man/pipe.Rd | 8 rtrek-0.2.0/rtrek/man/rtrek.Rd | 10 rtrek-0.2.0/rtrek/man/stBooks.Rd | 13 rtrek-0.2.0/rtrek/man/stBooksWiki.Rd |only rtrek-0.2.0/rtrek/man/stSeries.Rd |only rtrek-0.2.0/rtrek/man/st_books_wiki.Rd |only rtrek-0.2.0/rtrek/man/stapi.Rd | 10 rtrek-0.2.0/rtrek/man/tlBooks.Rd |only rtrek-0.2.0/rtrek/man/tlEvents.Rd |only rtrek-0.2.0/rtrek/man/tlFootnotes.Rd |only rtrek-0.2.0/rtrek/tests/testthat/test-api.R | 19 rtrek-0.2.0/rtrek/tests/testthat/test-data.R | 10 rtrek-0.2.0/rtrek/tests/testthat/test-mb_timeline.R |only rtrek-0.2.0/rtrek/tests/testthat/test-memory-alpha.R |only rtrek-0.2.0/rtrek/tests/testthat/test-memory-beta.R |only rtrek-0.2.0/rtrek/tests/testthat/test-tiles.R | 6 rtrek-0.2.0/rtrek/vignettes/rtrek.Rmd | 127 +++++ 61 files changed, 893 insertions(+), 310 deletions(-)
Title: Gaussian Process Modeling of Multi-Response and Possibly Noisy
Datasets
Description: Provides a general and efficient tool for fitting a response surface to a dataset via Gaussian processes. The dataset can have multiple responses and be noisy (with stationary variance). The fitted GP model can predict the gradient as well. The package is based on the work of Bostanabad, R., Kearney, T., Tao, S. Y., Apley, D. W. & Chen, W. (2018) Leveraging the nugget parameter for efficient Gaussian process modeling. International Journal for Numerical Methods in Engineering, 114, 501-516.
Author: Ramin Bostanabad, Tucker Kearney, Siyo Tao, Daniel Apley, and Wei Chen (IDEAL)
Maintainer: Ramin Bostanabad <bostanabad@u.northwestern.edu>
Diff between GPM versions 2.0.0 dated 2018-11-14 and 3.0.0 dated 2019-01-11
DESCRIPTION | 20 ++-- MD5 | 24 +++-- NAMESPACE | 6 + R/Auxil.R |only R/Draw.R | 30 ------ R/Fit.R | 257 ++++++++++++++++++++++++--------------------------------- R/NLogL.R | 75 +++------------- R/NLogL_G.R |only R/Predict.R | 72 ++------------- man/Auxil.Rd |only man/Draw.Rd | 8 - man/Fit.Rd | 60 ++++++++----- man/NLogL.Rd | 11 -- man/NLogL_G.Rd |only man/Predict.Rd | 13 +- 15 files changed, 220 insertions(+), 356 deletions(-)
Title: Functions to Automate Downloading Geospatial Data Available from
Several Federated Data Sources
Description: Functions to automate downloading geospatial data available from
several federated data sources (mainly sources maintained by the US Federal
government). Currently, the package enables extraction from seven datasets:
The National Elevation Dataset digital elevation models (1 and 1/3 arc-second;
USGS); The National Hydrography Dataset (USGS); The Soil Survey Geographic
(SSURGO) database from the National Cooperative Soil Survey (NCSS), which is
led by the Natural Resources Conservation Service (NRCS) under the USDA; the
Global Historical Climatology Network (GHCN), coordinated by National Climatic
Data Center at NOAA; the Daymet gridded estimates of daily weather parameters
for North America, version 3, available from the Oak Ridge National Laboratory's
Distributed Active Archive Center (DAAC); the International Tree Ring Data Bank;
and the National Land Cover Database (NLCD).
Author: R. Kyle Bocinsky [aut, cre],
Dylan Beaudette [ctb],
Scott Chamberlain [ctb]
Maintainer: R. Kyle Bocinsky <bocinsky@gmail.com>
Diff between FedData versions 2.5.5 dated 2018-08-09 and 2.5.6 dated 2019-01-11
DESCRIPTION | 17 ++-- LICENSE | 2 MD5 | 46 ++++++------ NAMESPACE | 4 + NEWS.md | 4 + R/NLCD_FUNCTIONS.R | 62 +++++++++++++++++ R/SSURGO_FUNCTIONS.R | 107 ++++++++++++++++++------------ R/UTILITY_FUNCTIONS.R | 4 - man/SDA_query.Rd |only man/figures/README-unnamed-chunk-10-1.png |binary man/figures/README-unnamed-chunk-11-1.png |binary man/figures/README-unnamed-chunk-12-1.png |binary man/figures/README-unnamed-chunk-13-1.png |binary man/figures/README-unnamed-chunk-13-2.png |binary man/figures/README-unnamed-chunk-13-3.png |binary man/figures/README-unnamed-chunk-13-4.png |binary man/figures/README-unnamed-chunk-13-5.png |binary man/figures/README-unnamed-chunk-13-6.png |binary man/figures/README-unnamed-chunk-5-1.png |binary man/figures/README-unnamed-chunk-6-1.png |binary man/figures/README-unnamed-chunk-7-1.png |binary man/figures/README-unnamed-chunk-8-1.png |binary man/figures/README-unnamed-chunk-9-1.png |binary man/pal_nlcd.Rd |only tests/testthat/test.SSURGO.R | 7 - 25 files changed, 176 insertions(+), 77 deletions(-)
More information about voronoiTreemap at CRAN
Permanent link
Title: Tables so Beautifully Fine-Tuned You Will Believe It's Magic
Description: The introduction of the 'broom' package has made converting model
objects into data frames as simple as a single function. While the 'broom'
package focuses on providing tidy data frames that can be used in advanced
analysis, it deliberately stops short of providing functionality for reporting
models in publication-ready tables. 'pixiedust' provides this functionality with
a programming interface intended to be similar to 'ggplot2's system of layers
with fine tuned control over each cell of the table. Options for output include
printing to the console and to the common markdown formats (markdown, HTML, and
LaTeX). With a little 'pixiedust' (and happy thoughts) tables can really fly.
Author: Benjamin Nutter [aut, cre],
David Kretch [ctb]
Maintainer: Benjamin Nutter <benjamin.nutter@gmail.com>
Diff between pixiedust versions 0.8.5 dated 2018-07-16 and 0.8.6 dated 2019-01-11
DESCRIPTION | 8 +-- MD5 | 82 +++++++++++++++++----------------- NAMESPACE | 5 +- R/dust.R | 6 ++ R/knit_print.dust.R | 3 + R/sysdata.rda |binary build/vignette.rds |binary inst/doc/advancedMagic.html | 28 ++++++++++- inst/doc/pixiedust.html | 29 ++++++++++-- inst/doc/sprinkles.html | 4 - man/dust.Rd | 16 +++--- man/gaze.Rd | 4 - man/glance_foot.Rd | 3 - man/index_to_sprinkle.Rd | 4 - man/knit_print.dust.Rd | 4 - man/pixieply.Rd | 3 - man/pval_string.Rd | 7 +- man/sprinkle.Rd | 4 - man/sprinkle_align.Rd | 13 ++--- man/sprinkle_bg.Rd | 16 +++--- man/sprinkle_bookdown.Rd | 4 - man/sprinkle_border.Rd | 22 ++++----- man/sprinkle_discrete.Rd | 18 +++---- man/sprinkle_fixed_header.Rd | 15 +++--- man/sprinkle_float.Rd | 8 +-- man/sprinkle_fn.Rd | 16 +++--- man/sprinkle_font.Rd | 25 +++++----- man/sprinkle_gradient.Rd | 12 ++-- man/sprinkle_height.Rd | 16 +++--- man/sprinkle_html_preserve.Rd | 4 - man/sprinkle_justify.Rd | 8 +-- man/sprinkle_longtable.Rd | 3 - man/sprinkle_merge.Rd | 12 ++-- man/sprinkle_na_string.Rd | 18 +++---- man/sprinkle_pad.Rd | 14 ++--- man/sprinkle_replace.Rd | 18 +++---- man/sprinkle_rotate_degree.Rd | 15 +++--- man/sprinkle_round.Rd | 4 - man/sprinkle_sanitize.Rd | 16 +++--- man/sprinkle_width.Rd | 12 ++-- man/tidy_levels_labels.Rd | 4 - tests/testthat/test-dust.grouped_df.R | 2 42 files changed, 285 insertions(+), 220 deletions(-)
Title: Hybrid Bayesian Networks Using R and JAGS
Description: Facilities for easy implementation of hybrid Bayesian networks
using R. Bayesian networks are directed acyclic graphs representing joint
probability distributions, where each node represents a random variable and
each edge represents conditionality. The full joint distribution is therefore
factorized as a product of conditional densities, where each node is assumed
to be independent of its non-descendents given information on its parent nodes.
Since exact, closed-form algorithms are computationally burdensome for inference
within hybrid networks that contain a combination of continuous and discrete
nodes, particle-based approximation techniques like Markov Chain Monte Carlo
are popular. We provide a user-friendly interface to constructing these networks
and running inference using the 'rjags' package. Econometric analyses (maximum
expected utility under competing policies, value of information) involving
decision and utility nodes are also supported.
Author: Jarrod E. Dalton <daltonj@ccf.org> and Benjamin Nutter
<benjamin.nutter@gmail.com>
Maintainer: Benjamin Nutter <benjamin.nutter@gmail.com>
Diff between HydeNet versions 0.10.8 dated 2018-07-19 and 0.10.9 dated 2019-01-11
DESCRIPTION | 8 - MD5 | 40 +++--- R/bindPosterior.R | 4 R/sysdata.rda |binary build/vignette.rds |binary data/BJDealer.RData |binary data/BlackJack.RData |binary data/BlackJackTrain.RData |binary data/PE.RData |binary data/Resolution.cpt.RData |binary data/SE.cpt.RData |binary data/inputCPTExample.RData |binary data/jagsDists.RData |binary data/jagsFunctions.RData |binary inst/doc/DecisionNetworks.html | 184 +++++++++++++++++--------------- inst/doc/GettingStartedWithHydeNet.html | 68 +++++++---- inst/doc/HydeNetPlots.html | 28 ++++ inst/doc/WorkingWithHydeNetObjects.html | 30 ++++- man/HydeSim.Rd | 4 man/plot.HydeNetwork.Rd | 4 man/setNode.Rd | 4 21 files changed, 231 insertions(+), 143 deletions(-)
Title: Generalized Linear Mixed Models using Template Model Builder
Description: Fit linear and generalized linear mixed models with various
extensions, including zero-inflation. The models are fitted using maximum
likelihood estimation via 'TMB' (Template Model Builder). Random effects are
assumed to be Gaussian on the scale of the linear predictor and are integrated
out using the Laplace approximation. Gradients are calculated using automatic
differentiation.
Author: Arni Magnusson [aut] (<https://orcid.org/0000-0003-2769-6741>),
Hans Skaug [aut],
Anders Nielsen [aut] (<https://orcid.org/0000-0001-9683-9262>),
Casper Berg [aut] (<https://orcid.org/0000-0002-3812-5269>),
Kasper Kristensen [aut],
Martin Maechler [aut] (<https://orcid.org/0000-0002-8685-9910>),
Koen van Bentham [aut],
Nafis Sadat [ctb] (<https://orcid.org/0000-0001-5715-616X>),
Ben Bolker [aut] (<https://orcid.org/0000-0002-2127-0443>),
Mollie Brooks [aut, cre] (<https://orcid.org/0000-0001-6963-8326>)
Maintainer: Mollie Brooks <mollieebrooks@gmail.com>
Diff between glmmTMB versions 0.2.2.0 dated 2018-07-03 and 0.2.3 dated 2019-01-11
glmmTMB-0.2.2.0/glmmTMB/vignettes/covstruct.md |only glmmTMB-0.2.2.0/glmmTMB/vignettes/mcmc.md |only glmmTMB-0.2.2.0/glmmTMB/vignettes/miscEx.md |only glmmTMB-0.2.2.0/glmmTMB/vignettes/sim.md |only glmmTMB-0.2.2.0/glmmTMB/vignettes/troubleshooting.md |only glmmTMB-0.2.3/glmmTMB/DESCRIPTION | 51 - glmmTMB-0.2.3/glmmTMB/MD5 | 136 +- glmmTMB-0.2.3/glmmTMB/NAMESPACE | 33 glmmTMB-0.2.3/glmmTMB/R/Anova.R |only glmmTMB-0.2.3/glmmTMB/R/VarCorr.R | 2 glmmTMB-0.2.3/glmmTMB/R/effects.R |only glmmTMB-0.2.3/glmmTMB/R/emmeans.R |only glmmTMB-0.2.3/glmmTMB/R/family.R | 131 ++ glmmTMB-0.2.3/glmmTMB/R/glmmTMB.R | 113 +- glmmTMB-0.2.3/glmmTMB/R/lme4_utils_temp.R |only glmmTMB-0.2.3/glmmTMB/R/methods.R | 483 ++++++++-- glmmTMB-0.2.3/glmmTMB/R/predict.R | 40 glmmTMB-0.2.3/glmmTMB/R/profile.R | 6 glmmTMB-0.2.3/glmmTMB/R/utils.R | 98 +- glmmTMB-0.2.3/glmmTMB/R/utils_covstruct.R | 3 glmmTMB-0.2.3/glmmTMB/build/vignette.rds |binary glmmTMB-0.2.3/glmmTMB/inst/NEWS.Rd | 34 glmmTMB-0.2.3/glmmTMB/inst/doc/covstruct.R | 207 ++-- glmmTMB-0.2.3/glmmTMB/inst/doc/covstruct.html | 245 ----- glmmTMB-0.2.3/glmmTMB/inst/doc/covstruct.rmd | 10 glmmTMB-0.2.3/glmmTMB/inst/doc/glmmTMB.pdf |binary glmmTMB-0.2.3/glmmTMB/inst/doc/mcmc.R | 110 +- glmmTMB-0.2.3/glmmTMB/inst/doc/mcmc.html | 152 ++- glmmTMB-0.2.3/glmmTMB/inst/doc/mcmc.rmd | 115 +- glmmTMB-0.2.3/glmmTMB/inst/doc/miscEx.html | 28 glmmTMB-0.2.3/glmmTMB/inst/doc/model_evaluation.R |only glmmTMB-0.2.3/glmmTMB/inst/doc/model_evaluation.html |only glmmTMB-0.2.3/glmmTMB/inst/doc/model_evaluation.rmd |only glmmTMB-0.2.3/glmmTMB/inst/doc/sim.R | 2 glmmTMB-0.2.3/glmmTMB/inst/doc/sim.html | 36 glmmTMB-0.2.3/glmmTMB/inst/doc/sim.rmd | 2 glmmTMB-0.2.3/glmmTMB/inst/doc/troubleshooting.R | 44 glmmTMB-0.2.3/glmmTMB/inst/doc/troubleshooting.html | 85 - glmmTMB-0.2.3/glmmTMB/inst/doc/troubleshooting.rmd | 30 glmmTMB-0.2.3/glmmTMB/inst/other_methods/effectsglmmTMB.R |only glmmTMB-0.2.3/glmmTMB/inst/test_data/IC_comp_data.rds |only glmmTMB-0.2.3/glmmTMB/inst/test_data/cov_struct_order.rds |only glmmTMB-0.2.3/glmmTMB/inst/vignette_data/mcmc.R |only glmmTMB-0.2.3/glmmTMB/inst/vignette_data/mcmc.rda |binary glmmTMB-0.2.3/glmmTMB/inst/vignette_data/model_evaluation.rda |only glmmTMB-0.2.3/glmmTMB/inst/vignette_data/tmbstan_traceplot.png |only glmmTMB-0.2.3/glmmTMB/man/Salamanders.Rd | 10 glmmTMB-0.2.3/glmmTMB/man/bootmer_methods.Rd |only glmmTMB-0.2.3/glmmTMB/man/confint.glmmTMB.Rd | 16 glmmTMB-0.2.3/glmmTMB/man/dot-collectDuplicates.Rd |only glmmTMB-0.2.3/glmmTMB/man/downstream_methods.Rd |only glmmTMB-0.2.3/glmmTMB/man/fbx.Rd | 3 glmmTMB-0.2.3/glmmTMB/man/formatVC.Rd | 4 glmmTMB-0.2.3/glmmTMB/man/formula.glmmTMB.Rd |only glmmTMB-0.2.3/glmmTMB/man/getME.glmmTMB.Rd | 2 glmmTMB-0.2.3/glmmTMB/man/getXReTrms.Rd | 4 glmmTMB-0.2.3/glmmTMB/man/get_cor.Rd |only glmmTMB-0.2.3/glmmTMB/man/glmmTMB.Rd | 19 glmmTMB-0.2.3/glmmTMB/man/mkTMBStruc.Rd | 10 glmmTMB-0.2.3/glmmTMB/man/nbinom2.Rd | 6 glmmTMB-0.2.3/glmmTMB/man/predict.glmmTMB.Rd | 21 glmmTMB-0.2.3/glmmTMB/man/print.VarCorr.glmmTMB.Rd | 4 glmmTMB-0.2.3/glmmTMB/man/profile.glmmTMB.Rd | 11 glmmTMB-0.2.3/glmmTMB/man/ranef.glmmTMB.Rd | 68 + glmmTMB-0.2.3/glmmTMB/man/simulate.glmmTMB.Rd | 4 glmmTMB-0.2.3/glmmTMB/man/splitForm.Rd | 2 glmmTMB-0.2.3/glmmTMB/src/glmmTMB.cpp | 2 glmmTMB-0.2.3/glmmTMB/tests/testthat/test-VarCorr.R | 10 glmmTMB-0.2.3/glmmTMB/tests/testthat/test-basics.R | 31 glmmTMB-0.2.3/glmmTMB/tests/testthat/test-downstream.R |only glmmTMB-0.2.3/glmmTMB/tests/testthat/test-edgecases.R |only glmmTMB-0.2.3/glmmTMB/tests/testthat/test-families.R | 34 glmmTMB-0.2.3/glmmTMB/tests/testthat/test-methods.R | 189 +++ glmmTMB-0.2.3/glmmTMB/tests/testthat/test-predict.R | 149 ++- glmmTMB-0.2.3/glmmTMB/tests/testthat/test-reml.R | 13 glmmTMB-0.2.3/glmmTMB/tests/testthat/test-varstruc.R | 27 glmmTMB-0.2.3/glmmTMB/tests/testthat/test-weight.R | 6 glmmTMB-0.2.3/glmmTMB/vignettes/covstruct.rmd | 10 glmmTMB-0.2.3/glmmTMB/vignettes/mcmc.rmd | 115 +- glmmTMB-0.2.3/glmmTMB/vignettes/model_evaluation.rmd |only glmmTMB-0.2.3/glmmTMB/vignettes/sim.rmd | 2 glmmTMB-0.2.3/glmmTMB/vignettes/troubleshooting.rmd | 30 82 files changed, 2013 insertions(+), 985 deletions(-)
Title: Methods to Enrich R Objects with Extra Components
Description: Provides the "enrich" method to enrich list-like R objects with new, relevant components. The current version has methods for enriching objects of class 'family', 'link-glm', 'lm', 'glm' and 'betareg'. The resulting objects preserve their class, so all methods associated with them still apply. The package also provides the 'enriched_glm' function that has the same interface as 'glm' but results in objects of class 'enriched_glm'. In addition to the usual components in a `glm` object, 'enriched_glm' objects carry an object-specific simulate method and functions to compute the scores, the observed and expected information matrix, the first-order bias, as well as model densities, probabilities, and quantiles at arbitrary parameter values. The package can also be used to produce customizable source code templates for the structured implementation of methods to compute new components and enrich arbitrary objects.
Author: Ioannis Kosmidis [aut, cre]
Maintainer: Ioannis Kosmidis <ioannis.kosmidis@warwick.ac.uk>
Diff between enrichwith versions 0.1.1 dated 2018-05-06 and 0.2 dated 2019-01-11
DESCRIPTION | 13 ++-- MD5 | 50 ++++++++--------- NEWS.md | 17 +++++ R/data.R | 2 R/enrich.betareg.R | 65 +++++++++++++++++----- R/enrich.glm.R | 23 +++++-- R/enrich.lm.R | 13 +++- R/enriched_glm.R | 16 ++++- build/vignette.rds |binary inst/doc/GLMs.Rmd | 2 inst/doc/GLMs.html | 94 ++++++++++++++++---------------- inst/doc/bias.Rmd | 2 inst/doc/bias.html | 30 ++++------ inst/doc/exponential_family.R | 1 inst/doc/exponential_family.Rmd | 3 - inst/doc/exponential_family.html | 53 ++++++++---------- man/coef.enriched_glm.Rd | 4 - man/coef.enriched_lm.Rd | 4 - man/endometrial.Rd | 2 man/enriched_glm.Rd | 21 ++++--- man/get_information_function.betareg.Rd | 7 ++ man/get_information_function.glm.Rd | 4 + vignettes/GLMs.Rmd | 2 vignettes/bias.Rmd | 2 vignettes/enrichwith.bib | 2 vignettes/exponential_family.Rmd | 3 - 26 files changed, 269 insertions(+), 166 deletions(-)
Title: Curve Linear Regression via Dimension Reduction
Description: A new methodology for linear regression with both curve response
and curve regressors, which is described in Cho, Goude, Brossat and Yao
(2013) <doi:10.1080/01621459.2012.722900> and (2015)
<doi:10.1007/978-3-319-18732-7_3>. The key idea behind this methodology is
dimension reduction based on a singular value decomposition in a Hilbert
space, which reduces the curve regression problem to several scalar linear
regression problems.
Author: Amandine Pierrot
with contributions and/or help from Qiwei Yao, Haeran Cho, Yannig Goude and
Tony Aldon.
Maintainer: Amandine Pierrot <amandine.m.pierrot@gmail.com>
Diff between clr versions 0.1.0 dated 2018-12-03 and 0.1.1 dated 2019-01-11
DESCRIPTION | 6 +++--- MD5 | 11 ++++++----- NEWS.md |only R/manage-data.R | 4 +++- R/predict-clr.R | 2 +- man/clrdata.Rd | 2 ++ man/predict.clr.Rd | 2 +- 7 files changed, 16 insertions(+), 11 deletions(-)
Title: Nested and Crossed Block Designs for Factorial, Fractional
Factorial and Unstructured Treatment Sets
Description: Constructs D-optimal or near D-optimal nested and crossed
block designs for unstructured or general factorial treatment designs.
The treatment design, if required, is found from a defined model
design formula. The block design is found from a defined
set of block factors and is conditional on the defined treatment design.
The block factors are added in sequence and each added block factor
is optimized conditional on all previously added block factors.
The block design can have repeated nesting down to any required
depth of nesting with either simple nested blocks or a
crossed blocks design at each level of nesting. Outputs include a table
showing the allocation of treatments to blocks and tables showing
the achieved D-efficiency factors for each block and treatment design.
Author: R. N. Edmondson.
Maintainer: Rodney Edmondson <rodney.edmondson@gmail.com>
Diff between blocksdesign versions 3.2 dated 2018-12-18 and 3.3 dated 2019-01-11
blocksdesign-3.2/blocksdesign/R/blocksdesign-deprecated.R |only blocksdesign-3.2/blocksdesign/R/efficiencies.R |only blocksdesign-3.2/blocksdesign/man/blocksdesign-deprecated.Rd |only blocksdesign-3.2/blocksdesign/man/upper_bounds.Rd |only blocksdesign-3.3/blocksdesign/DESCRIPTION | 12 blocksdesign-3.3/blocksdesign/MD5 | 36 blocksdesign-3.3/blocksdesign/NAMESPACE | 8 blocksdesign-3.3/blocksdesign/R/Efficiencies.R |only blocksdesign-3.3/blocksdesign/R/MOLS.R |only blocksdesign-3.3/blocksdesign/R/blockEfficiencies.R |only blocksdesign-3.3/blocksdesign/R/blocks.r | 377 +-- blocksdesign-3.3/blocksdesign/R/design.r | 1199 +++++------ blocksdesign-3.3/blocksdesign/R/fullModel.R |only blocksdesign-3.3/blocksdesign/R/hcf.R |only blocksdesign-3.3/blocksdesign/R/isPrime.R |only blocksdesign-3.3/blocksdesign/R/upper_bounds.r | 4 blocksdesign-3.3/blocksdesign/build |only blocksdesign-3.3/blocksdesign/inst |only blocksdesign-3.3/blocksdesign/man/A_bound.Rd |only blocksdesign-3.3/blocksdesign/man/EstEffics.Rd |only blocksdesign-3.3/blocksdesign/man/HCF.Rd |only blocksdesign-3.3/blocksdesign/man/blockEfficiencies.Rd | 2 blocksdesign-3.3/blocksdesign/man/blocks.Rd | 7 blocksdesign-3.3/blocksdesign/man/design.Rd | 107 blocksdesign-3.3/blocksdesign/man/fullModel.Rd |only blocksdesign-3.3/blocksdesign/man/isPrime.Rd |only blocksdesign-3.3/blocksdesign/man/orthogLS.Rd |only blocksdesign-3.3/blocksdesign/vignettes |only 28 files changed, 859 insertions(+), 893 deletions(-)
Title: Minimal Working Examples for Particle Metropolis-Hastings
Description: Routines for state estimate in a linear
Gaussian state space model and a simple stochastic volatility model using
particle filtering. Parameter inference is also carried out in these models
using the particle Metropolis-Hastings algorithm that includes the particle
filter to provided an unbiased estimator of the likelihood. This package is
a collection of minimal working examples of these algorithms and is only
meant for educational use and as a start for learning to them on your own.
Author: Johan Dahlin
Maintainer: Johan Dahlin <uni@johandahlin.com>
Diff between pmhtutorial versions 1.3 dated 2018-10-18 and 1.4 dated 2019-01-11
DESCRIPTION | 8 +++--- MD5 | 18 +++++++------- R/example1-lgss.R | 63 +++++++++++++++++++++++++-------------------------- R/example2-lgss.R | 57 +++++++++++++++++++++++----------------------- R/example3-sv.R | 5 ++-- R/example4-sv.R | 6 +++- R/example5-sv.R | 2 - man/example1_lgss.Rd | 26 ++++++++++----------- man/example2_lgss.Rd | 24 +++++++++---------- man/example3_sv.Rd | 1 10 files changed, 108 insertions(+), 102 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-12-13 0.8-5
2013-11-14 0.7-9
Title: Create Panels of Independent States
Description: Create panel data consisting of independent states from 1816 to
the present. The package includes the Gleditsch & Ward (G&W) and Correlates
of War (COW) lists of independent states, as well as helper functions for
working with state panel data and standardizing other data sources to
create country-year/month/etc. data.
Author: Andreas Beger [cre, aut] (<https://orcid.org/0000-0003-1883-3169>)
Maintainer: Andreas Beger <adbeger@gmail.com>
Diff between states versions 0.2.1 dated 2018-05-06 and 0.2.2 dated 2019-01-11
DESCRIPTION | 13 ++-- MD5 | 31 ++++++---- NEWS.md | 32 +++++++--- R/data.R | 26 ++++++-- R/plot-missing.R | 108 ++++++++++++++++++++++++++++++------- R/state-panel.R | 40 +++++++++++-- README.md |only build/vignette.rds |binary data/gwstates.rda |binary inst/doc/differences-gw-cow.html | 20 +++--- man/dot-warner.Rd |only man/figures |only man/plot_missing.Rd | 49 +++++++++------- man/sfind.Rd | 2 man/state_panel.Rd | 13 +++- tests/testthat/test-plot-missing.R | 91 ++++++++++++++++++++++++++----- tests/testthat/test-sfind.R |only tests/testthat/test-state-panel.R | 42 ++++++++++++++ tests/testthat/test-utils.R |only 19 files changed, 358 insertions(+), 109 deletions(-)
Title: Testing and Plotting Procedures for Biostatistics
Description: Contains miscellaneous functions useful in biostatistics, mostly univariate and multivariate testing procedures with a special emphasis on permutation tests. Many functions intend to simplify user's life by shortening existing procedures or by implementing plotting functions that can be used with as many methods from different packages as possible.
Author: Maxime Hervé
Maintainer: Maxime Hervé <maxime.herve@univ-rennes1.fr>
Diff between RVAideMemoire versions 0.9-70 dated 2018-11-06 and 0.9-71 dated 2019-01-11
DESCRIPTION | 8 ++++---- MD5 | 20 ++++++++++---------- NEWS | 4 ++++ R/MVA.cmv.R | 18 ++++++++++++++++-- R/MVA.cv.R | 18 ++++++++++++++++-- R/least.rect.R | 2 +- R/print.RVtest.R | 2 +- R/zzz.R | 2 +- man/MVA.cmv.Rd | 1 + man/MVA.cv.Rd | 1 + man/RVAideMemoire-package.Rd | 4 ++-- 11 files changed, 57 insertions(+), 23 deletions(-)
Title: Read and Write from the System Clipboard
Description: Simple utility functions to read from and write to
the Windows, OS X, and X11 clipboards.
Author: Matthew Lincoln [aut, cre] (<https://orcid.org/0000-0002-4387-3384>),
Louis Maddox [ctb],
Steve Simpson [ctb],
Jennifer Bryan [ctb]
Maintainer: Matthew Lincoln <matthew.d.lincoln@gmail.com>
Diff between clipr versions 0.4.1 dated 2018-06-23 and 0.5.0 dated 2019-01-11
clipr-0.4.1/clipr/R/sys_type.R |only clipr-0.5.0/clipr/DESCRIPTION | 48 ++++++++++++-------- clipr-0.5.0/clipr/MD5 | 20 ++++---- clipr-0.5.0/clipr/NEWS.md | 9 +++ clipr-0.5.0/clipr/R/clipboard.R | 40 +++++++++++++--- clipr-0.5.0/clipr/R/utils.R |only clipr-0.5.0/clipr/README.md | 28 +++++++++-- clipr-0.5.0/clipr/man/clear_clip.Rd | 5 +- clipr-0.5.0/clipr/man/clipr_available.Rd | 15 +++++- clipr-0.5.0/clipr/man/write_clip.Rd | 32 ++++++++++--- clipr-0.5.0/clipr/tests/testthat/setup.R | 1 clipr-0.5.0/clipr/tests/testthat/test-diagnostics.R | 44 +++++++++++------- 12 files changed, 174 insertions(+), 68 deletions(-)
Title: Raw Accelerometer Data Analysis
Description: A tool to process and analyse data collected with wearable raw acceleration sensors as described in van Hees and colleagues (2014) <doi: 10.1152/japplphysiol.00421.2014> and (2015) <doi: 10.1371/journal.pone.0142533>. The package has been developed and tested for binary data from 'GENEActiv' <https://www.activinsights.com/> and GENEA devices (not for sale), .csv-export data from 'Actigraph' <http://actigraphcorp.com> devices, and .cwa and .wav-format data from 'Axivity' <https://axivity.com/product/ax3>. These devices are currently widely used in research on human daily physical activity.
Author: Vincent T van Hees [aut, cre],
Zhou Fang [ctb],
Jing Hua Zhao [ctb],
Joe Heywood [ctb],
Evgeny Mirkes [ctb],
Severine Sabia [ctb],
Joan Capdevila Pujol [ctb],
Jairo H Migueles [ctb]
Maintainer: Vincent T van Hees <vincentvanhees@gmail.com>
Diff between GGIR versions 1.7-1 dated 2018-11-25 and 1.8-1 dated 2019-01-11
DESCRIPTION | 10 + MD5 | 54 +++++---- NAMESPACE | 3 R/g.calibrate.R | 71 +++++------- R/g.cwaread.R | 61 +++++----- R/g.dotorcomma.R | 4 R/g.getmeta.R | 78 ++++++-------- R/g.inspectfile.R | 13 +- R/g.intensitygradient.R | 15 +- R/g.part1.R | 39 +++---- R/g.part2.R | 31 +---- R/g.part4.R | 50 ++++++-- R/g.part5.R | 6 - R/g.readaccfile.R | 189 +++++++++++++++++----------------- R/g.report.part2.R | 50 +++++--- R/g.report.part4.R | 55 --------- R/g.report.part5.R | 27 +++- R/is.ISO8601.R |only R/updateBlocksize.R |only build/vignette.rds |binary inst/NEWS.Rd | 17 +++ man/GGIR-package.Rd | 7 - man/g.cwaread.Rd | 5 man/g.dotorcomma.Rd | 5 man/g.inspectfile.Rd | 10 + man/g.readaccfile.Rd | 20 ++- man/is.ISO8601.Rd |only man/updateBlocksize.Rd |only tests/testthat/test_chainof5parts.R | 12 +- tests/testthat/test_isISO8601.R |only tests/testthat/test_updateBlocksize.R |only 31 files changed, 422 insertions(+), 410 deletions(-)
Title: Dynamic Hazard Models using State Space Models
Description: Contains functions that lets you fit dynamic hazard models using
state space models. The first implemented model is described in Fahrmeir
(1992) <doi:10.1080/01621459.1992.10475232> and Fahrmeir (1994)
<doi:10.1093/biomet/81.2.317>. Extensions hereof are available where the
Extended Kalman filter is replaced by an unscented Kalman filter and other
options including particle filters. The implemented particle filters support
more general state space models.
Author: Benjamin Christoffersen [cre, aut],
Alan Miller [cph],
Anthony Williams [cph],
Boost developers [cph],
R-core [cph]
Maintainer: Benjamin Christoffersen <boennecd@gmail.com>
Diff between dynamichazard versions 0.6.2 dated 2019-01-10 and 0.6.3 dated 2019-01-11
dynamichazard-0.6.2/dynamichazard/vignettes/Bootstrap_illustration.pdf |only dynamichazard-0.6.2/dynamichazard/vignettes/Particle_filtering.pdf |only dynamichazard-0.6.3/dynamichazard/DESCRIPTION | 6 +- dynamichazard-0.6.3/dynamichazard/MD5 | 24 +++++---- dynamichazard-0.6.3/dynamichazard/build/vignette.rds |binary dynamichazard-0.6.3/dynamichazard/inst/doc/Bootstrap_illustration.pdf |only dynamichazard-0.6.3/dynamichazard/inst/doc/Bootstrap_illustration.pdf.asis |only dynamichazard-0.6.3/dynamichazard/inst/doc/Comparing_methods_for_logistic_models.pdf |binary dynamichazard-0.6.3/dynamichazard/inst/doc/Diagnostics.pdf |binary dynamichazard-0.6.3/dynamichazard/inst/doc/Particle_filtering.pdf |only dynamichazard-0.6.3/dynamichazard/inst/doc/Particle_filtering.pdf.asis |only dynamichazard-0.6.3/dynamichazard/inst/doc/ddhazard.pdf |binary dynamichazard-0.6.3/dynamichazard/src/BLAS_LAPACK/R_BLAS_LAPACK.cpp | 25 ++++++---- dynamichazard-0.6.3/dynamichazard/src/PF/dmvnrm.cpp | 6 +- dynamichazard-0.6.3/dynamichazard/src/sample_funcs.cpp | 3 - dynamichazard-0.6.3/dynamichazard/vignettes/Bootstrap_illustration.pdf.asis |only dynamichazard-0.6.3/dynamichazard/vignettes/Particle_filtering.pdf.asis |only 17 files changed, 38 insertions(+), 26 deletions(-)
Title: Surrogate-Based Optimization
Description: Multi-Objective optimization based on surrogate models.
Important functions: build_surmodel, train_hego, train_mego, train_sme.
Author: Adriano Passos [aut, cre],
Marco Luersen [ctb]
Maintainer: Adriano Passos <adriano.utfpr@gmail.com>
Diff between suropt versions 0.1.0 dated 2018-11-26 and 0.1.1 dated 2019-01-11
DESCRIPTION | 6 +++--- MD5 | 4 ++-- R/model.R | 29 +++++++++++++++++++++-------- 3 files changed, 26 insertions(+), 13 deletions(-)
Title: Different Tensor Factorization (Decomposition) Techniques for
RDF Tensors (Three-Mode-Tensors)
Description: Different Tensor Factorization techniques suitable for RDF Tensors.
RDF Tensors are three-mode-tensors, binary tensors and usually very sparse.
Currently implemented methods are
'RESCAL' Maximilian Nickel, Volker Tresp, and Hans-Peter Kriegel (2012) <doi:10.1145/2187836.2187874>,
'NMU' Daniel D. Lee and H. Sebastian Seung (1999) <doi:10.1038/44565>,
'ALS', Alternating Least Squares
'parCube' Papalexakis, Evangelos, C. Faloutsos, and N. Sidiropoulos (2012) <doi:10.1007/978-3-642-33460-3_39>,
'CP_APR' C. Chi and T. G. Kolda (2012) <doi:10.1137/110859063>.
The code is mostly converted from MATLAB and Python implementations of these methods.
The package also contains functions to get Boolean (Binary) transformation of the real-number-decompositions.
These methods also are for general tensors, so with few modifications they can be applied for other types of tensor.
Author: Abdelmoneim Amer Desouki
Maintainer: Abdelmoneim Amer Desouki <desouki@mail.upb.de>
Diff between RDFTensor versions 1.0 dated 2018-11-27 and 1.1 dated 2019-01-11
DESCRIPTION | 8 ++++---- MD5 | 14 ++++++++------ NAMESPACE | 1 + NEWS |only R/CP_01.R | 37 ++++++++++++++++++++++++++++++++++++- R/cp_als.R | 2 +- R/cp_nmu.R | 2 +- build/partial.rdb |binary man/getTensor3m.Rd |only 9 files changed, 51 insertions(+), 13 deletions(-)
Title: Model Based Treatment of Missing Data
Description: Contains model-based treatment of missing data for regression
models with missing values in covariates or the dependent
variable using maximum likelihood or Bayesian estimation
(Ibrahim et al., 2005; <doi:10.1198/016214504000001844>).
The regression model can be nonlinear (e.g., interaction
effects, quadratic effects or B-spline functions).
Multilevel models with missing data in predictors are
available for Bayesian estimation. Substantive-model compatible
multiple imputation can be also conducted.
Author: Alexander Robitzsch [aut, cre], Oliver Luedtke [aut]
Maintainer: Alexander Robitzsch <robitzsch@ipn.uni-kiel.de>
Diff between mdmb versions 1.1-51 dated 2019-01-07 and 1.2-4 dated 2019-01-11
DESCRIPTION | 8 ++++---- MD5 | 17 +++++++++-------- R/RcppExports.R | 2 +- R/frm_fb.R | 2 +- R/frm_fb_mh_refresh_imputed_values.R | 6 ++---- R/frm_proposal_refresh_helper.R | 16 ++++++++-------- R/mdmb_refresh_proposal_sd.R |only build/partial.rdb |binary inst/NEWS | 9 +++++++++ src/RcppExports.cpp | 2 +- 10 files changed, 35 insertions(+), 27 deletions(-)
Title: Joint Segmentation of Multivariate (Copy Number) Signals
Description: Methods for fast segmentation of multivariate
signals into piecewise constant profiles and for generating realistic
copy-number profiles. A typical application is the joint segmentation of total
DNA copy numbers and allelic ratios obtained from Single Nucleotide Polymorphism
(SNP) microarrays in cancer studies. The methods are described in Pierre-Jean,
Rigaill and Neuvial (2015) <doi:10.1093/bib/bbu026>.
Author: Morgane Pierre-Jean [aut, cre],
Pierre Neuvial [aut],
Guillem Rigaill [aut]
Maintainer: Morgane Pierre-Jean <mpierrejean.pro@gmail.com>
Diff between jointseg versions 1.0.1 dated 2017-11-28 and 1.0.2 dated 2019-01-11
DESCRIPTION | 8 ++-- MD5 | 24 ++++++------ NEWS.md | 4 ++ build/vignette.rds |binary inst/doc/PSSeg.html | 81 +++++++++++++++++++++++------------------- inst/doc/dataGeneration.Rmd | 4 +- inst/doc/dataGeneration.html | 54 ++++++++++++++++------------ man/jointSeg.Rd | 9 ++-- man/leftMultiplyByInvXAtXA.Rd | 3 + man/multiplyXtXBySparse.Rd | 3 + man/pruneByDP.Rd | 4 +- man/segmentByGFLars.Rd | 4 +- vignettes/dataGeneration.Rmd | 4 +- 13 files changed, 113 insertions(+), 89 deletions(-)
Title: Mining Rigs for Specialized Subset Sum, Multi-Subset Sum,
Multidimensional Subset Sum, Multidimensional Knapsack,
Generalized Assignment Problems
Description: Specialized solvers for combinatorial optimization problems in the Subset Sum family. These solvers differ from the mainstream in the options of (i) restricting subset size, (ii) bounding subset elements, (iii) mining real-value sets with predefined subset sum errors, and (iv) finding one or more subsets in limited time. A novel algorithm for mining the one-dimensional Subset Sum induced algorithms for the multi-Subset Sum and the multidimensional Subset Sum. The latter decomposes the problem in a novel approach, and the multi-threaded framework offers exact algorithms to the multidimensional Knapsack and the Generalized Assignment problems. Package updates include (a) renewed implementation of the multi-Subset Sum, multidimensional Knapsack and Generalized Assignment solvers; (b) availability of bounding solution space in the multidimensional Subset Sum; (c) fundamental data structure and architectural changes for enhanced cache locality and better chance of SIMD vectorization; (d) an option of mapping real-domain problems to the integer domain with user-controlled precision loss, and those integers are further zipped non-uniformly in 64-bit buffers. Arithmetic on compressed integers is done by bit-manipulation and the design has virtually zero speed lag relative to normal integers arithmetic. The consequent reduction in dimensionality may yield substantial acceleration. Compilation with g++ '-Ofast' is recommended. See package vignette (<arXiv:1612.04484v3>) for details. Functions prefixed with 'aux' (auxiliary) are or will be implementations of existing foundational or cutting-edge algorithms for solving optimization problems of interest.
Author: Charlie Wusuo Liu
Maintainer: Charlie Wusuo Liu <liuwusuo@gmail.com>
Diff between FLSSS versions 8.3 dated 2019-01-08 and 8.5.2 dated 2019-01-11
DESCRIPTION | 6 MD5 | 122 +++++----- NAMESPACE | 17 - R/RcppExports.R | 4 R/auxGAP.r | 36 +++ inst/NEWS.Rd | 50 ++-- man/auxGAPbb.Rd | 16 - man/auxGAPga.Rd |only src/BaB01kp.cpp | 15 + src/BaBgapMulthreadKPs.cpp | 25 +- src/BaBgapMulthreadNodes.cpp | 23 + src/DP01kp.cpp | 1 src/DPgapMultithreadKPs.cpp | 1 src/DPgapMultithreadNodes.cpp | 1 src/GAP.cpp | 1 src/GAgap.cpp |only src/Gknapsack.cpp | 1 src/RcppExports.cpp | 19 + src/findBoundInterface.cpp | 1 src/flsss.cpp | 1 src/flsssVariableTree.cpp | 1 src/header/BaB01kp.hpp | 1 src/header/DP01kp.hpp | 1 src/header/PATclass.hpp | 1 src/header/dnyTasking.hpp | 1 src/header/integerize.hpp | 1 src/header/mPATclass.hpp | 1 src/header/macros.hpp | 1 src/header/mflsssOBJ.hpp | 1 src/header/mvalFindBound.hpp | 1 src/header/mvalOperation.hpp | 1 src/header/oneDfindBound.hpp | 1 src/header/oneDoperation.hpp | 1 src/header/raiseSupressBound.hpp | 1 src/header/singleDstack.hpp | 1 src/header/triMat.hpp | 1 src/header/triMatOneD.hpp | 1 src/legacy/BaB01kpOld.cpp | 1 src/legacy/GAP.cpp | 1 src/legacy/GAPintegerized.Rd | 1 src/legacy/PATclass.hpp | 1 src/legacy/gap.r | 1 src/legacy/gapBaBold.cpp | 1 src/legacy/mPATclass.hpp | 1 src/legacy/macros.hpp | 1 src/legacy/mflsssComo.cpp | 1 src/legacy/multiDIO.hpp | 1 src/legacy/multiDstack.hpp | 1 src/legacy/multiDstack02.hpp | 1 src/legacy/mvalFindBound.hpp | 1 src/legacy/mvalOperation.hpp | 1 src/legacy/oneDfindBound.hpp | 1 src/legacy/oneDoperation.hpp | 1 src/legacy/raiseSupressBound.hpp | 1 src/legacy/singleDIO.hpp | 1 src/legacy/singleDstack.hpp | 1 src/legacy/triMat.hpp | 1 src/legacy/triMatOneD.hpp | 1 src/mflsss.cpp | 1 src/mflsssComoPar.cpp | 1 src/mflsssVariableTree.cpp | 1 src/testIntegerize.cpp | 1 tests/debugTests/gapnew.r | 455 +++++++++++++-------------------------- 63 files changed, 425 insertions(+), 412 deletions(-)
Title: Read EPUB File Metadata and Text
Description: Provides functions supporting the reading and parsing of internal e-book content from EPUB files.
The 'epubr' package provides functions supporting the reading and parsing of internal e-book content from EPUB files.
E-book metadata and text content are parsed separately and joined together in a tidy, nested tibble data frame.
E-book formatting is not completely standardized across all literature.
It can be challenging to curate parsed e-book content across an arbitrary collection of e-books
perfectly and in completely general form, to yield a singular, consistently formatted output.
Many EPUB files do not even contain all the same pieces of information in their respective metadata.
EPUB file parsing functionality in this package is intended for relatively general application to arbitrary EPUB e-books.
However, poorly formatted e-books or e-books with highly uncommon formatting may not work with this package.
There may even be cases where an EPUB file has DRM or some other property that makes it impossible to read with 'epubr'.
Text is read 'as is' for the most part. The only nominal changes are minor substitutions, for example curly quotes changed to straight quotes.
Substantive changes are expected to be performed subsequently by the user as part of their text analysis.
Additional text cleaning can be performed at the user's discretion, such as with functions from packages like 'tm' or 'qdap'.
Author: Matthew Leonawicz [aut, cre] (<https://orcid.org/0000-0001-9452-2771>)
Maintainer: Matthew Leonawicz <matt_leonawicz@esource.com>
Diff between epubr versions 0.5.0 dated 2018-10-22 and 0.6.0 dated 2019-01-11
DESCRIPTION | 25 ++- MD5 | 39 +++- NAMESPACE | 4 NEWS.md | 11 + R/epub.R | 32 ++-- R/epubr.R | 16 +- R/helpers.R | 41 ++++- R/recombine.R |only R/reorder.R |only R/sift.R |only README.md | 66 ++++---- build/vignette.rds |binary inst/doc/epubr.R | 50 +++++- inst/doc/epubr.Rmd | 127 ++++++++++++++-- inst/doc/epubr.html | 301 +++++++++++++++++++++++++++++--------- man/count_words.Rd |only man/epub.Rd | 6 man/epub_recombine.Rd |only man/epub_reorder.Rd |only man/epub_sift.Rd |only man/epubr.Rd | 16 +- man/figures |only tests/testthat/test-epub.R | 17 +- tests/testthat/test-restructure.R |only vignettes/epubr.Rmd | 127 ++++++++++++++-- 25 files changed, 690 insertions(+), 188 deletions(-)
Title: Gaussian Mixture Models, K-Means, Mini-Batch-Kmeans, K-Medoids
and Affinity Propagation Clustering
Description: Gaussian mixture models, k-means, mini-batch-kmeans, k-medoids and affinity propagation clustering with the option to plot, validate, predict (new data) and estimate the optimal number of clusters. The package takes advantage of 'RcppArmadillo' to speed up the computationally intensive parts of the functions. For more information, see (i) "Clustering in an Object-Oriented Environment" by Anja Struyf, Mia Hubert, Peter Rousseeuw (1997), Journal of Statistical Software, <doi:10.18637/jss.v001.i04>; (ii) "Web-scale k-means clustering" by D. Sculley (2010), ACM Digital Library, <doi:10.1145/1772690.1772862>; (iii) "Armadillo: a template-based C++ library for linear algebra" by Sanderson et al (2016), The Journal of Open Source Software, <doi:10.21105/joss.00026>; (iv) "Clustering by Passing Messages Between Data Points" by Brendan J. Frey and Delbert Dueck, Science 16 Feb 2007: Vol. 315, Issue 5814, pp. 972-976, <doi:10.1126/science.1136800>.
Author: Lampros Mouselimis [aut, cre],
Conrad Sanderson [cph] (Author of the C++ Armadillo library),
Ryan Curtin [cph] (Author of the C++ Armadillo library),
Siddharth Agrawal [cph] (Author of the C code of the Mini-Batch-Kmeans
algorithm
(https://github.com/siddharth-agrawal/Mini-Batch-K-Means)),
Brendan Frey [cph] (Author of the matlab code of the Affinity
propagation algorithm (for commercial use please contact the
author)),
Delbert Dueck [cph] (Author of the matlab code of the Affinity
propagation algorithm)
Maintainer: Lampros Mouselimis <mouselimislampros@gmail.com>
Diff between ClusterR versions 1.1.7 dated 2018-12-09 and 1.1.8 dated 2019-01-11
DESCRIPTION | 14 +++++++------- MD5 | 8 ++++---- NAMESPACE | 1 - NEWS.md | 5 +++++ inst/doc/the_clusterR_package.html | 12 ++++++------ 5 files changed, 22 insertions(+), 18 deletions(-)
Title: 'Shiny' Applications for the R Package 'Luminescence'
Description: A collection of 'shiny' applications for the R package
'Luminescence'. These mainly, but not exclusively, include applications for
plotting chronometric data from e.g. luminescence or radiocarbon dating. It
further provides access to bootstraps tooltip and popover functionality and
contains the 'jscolor.js' library with a custom 'shiny' output binding.
Author: Christoph Burow [aut, cre] (<https://orcid.org/0000-0002-5023-4046>),
Urs Tilmann Wolpert [aut],
Sebastian Kreutzer [aut] (<https://orcid.org/0000-0002-0734-2199>),
R Luminescence Package Team [ctb],
Jan Odvarko [cph] (jscolor.js in www/jscolor),
AnalytixWare [cph] (ShinySky package),
RStudio [cph] (chooser_inputBinding.js in www/ and chooser.R in R/)
Maintainer: Christoph Burow <christoph.burow@uni-koeln.de>
Diff between RLumShiny versions 0.2.1 dated 2018-06-18 and 0.2.2 dated 2019-01-11
DESCRIPTION | 21 ++++++++-------- MD5 | 27 +++++++++++++++------ NEWS | 62 ++++++++++++++++++++++++++++++++------------------ R/addin.R | 12 ++++++++- R/app_RLum.R | 11 +++++++- R/module_aboutTab.R | 4 --- R/zzz.R | 3 ++ inst/shiny/RCarb |only inst/shiny/scalegamma |only man/app_RLum.Rd | 6 ++++ man/jscolorInput.Rd | 3 +- 11 files changed, 101 insertions(+), 48 deletions(-)
Title: 'pinp' is not 'PNAS'
Description: A 'PNAS'-alike style for 'rmarkdown', derived from the
'Proceedings of the National Academy of Sciences of the United States
of America' ('PNAS', see <https://www.pnas.org>) 'LaTeX' style, and
adapted for use with 'markdown' and 'pandoc'.
Author: Dirk Eddelbuettel and James Balamuta
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between pinp versions 0.0.6 dated 2018-07-17 and 0.0.7 dated 2019-01-11
ChangeLog | 40 ++++++++++++++++++++ DESCRIPTION | 8 ++-- MD5 | 20 +++++----- build/vignette.rds |binary inst/NEWS.Rd | 11 +++++ inst/doc/pinp.Rmd | 25 +++++++++++- inst/doc/pinp.pdf |binary inst/rmarkdown/templates/pdf/resources/template.tex | 14 ++++++- inst/rmarkdown/templates/pdf/skeleton/pinp.cls | 13 ++++-- inst/rmarkdown/templates/pdf/skeleton/skeleton.Rmd | 10 ++++- vignettes/pinp.Rmd | 25 +++++++++++- 11 files changed, 137 insertions(+), 29 deletions(-)
Title: Cache 'CRAN'-Like Metadata and R Packages
Description: Metadata and package cache for CRAN-like repositories.
This is a utility package to be used by package management tools
that want to take advantage of caching.
Author: Gábor Csárdi [aut, cre]
Maintainer: Gábor Csárdi <csardi.gabor@gmail.com>
Diff between pkgcache versions 1.0.2 dated 2018-12-31 and 1.0.3 dated 2019-01-11
pkgcache-1.0.2/pkgcache/man/async.Rd |only pkgcache-1.0.2/pkgcache/man/async_constant.Rd |only pkgcache-1.0.2/pkgcache/man/async_debug.Rd |only pkgcache-1.0.2/pkgcache/man/async_detect.Rd |only pkgcache-1.0.2/pkgcache/man/async_every.Rd |only pkgcache-1.0.2/pkgcache/man/async_filter.Rd |only pkgcache-1.0.2/pkgcache/man/async_map.Rd |only pkgcache-1.0.2/pkgcache/man/async_reflect.Rd |only pkgcache-1.0.2/pkgcache/man/async_replicate.Rd |only pkgcache-1.0.2/pkgcache/man/async_retry.Rd |only pkgcache-1.0.2/pkgcache/man/async_retryable.Rd |only pkgcache-1.0.2/pkgcache/man/async_sequence.Rd |only pkgcache-1.0.2/pkgcache/man/async_timeout.Rd |only pkgcache-1.0.2/pkgcache/man/async_timer.Rd |only pkgcache-1.0.2/pkgcache/man/async_try_each.Rd |only pkgcache-1.0.2/pkgcache/man/async_until.Rd |only pkgcache-1.0.2/pkgcache/man/async_whilst.Rd |only pkgcache-1.0.2/pkgcache/man/deferred.Rd |only pkgcache-1.0.2/pkgcache/man/delay.Rd |only pkgcache-1.0.2/pkgcache/man/download_file.Rd |only pkgcache-1.0.2/pkgcache/man/download_if_newer.Rd |only pkgcache-1.0.2/pkgcache/man/download_one_of.Rd |only pkgcache-1.0.2/pkgcache/man/event_emitter.Rd |only pkgcache-1.0.2/pkgcache/man/http_get.Rd |only pkgcache-1.0.2/pkgcache/man/http_head.Rd |only pkgcache-1.0.2/pkgcache/man/http_stop_for_status.Rd |only pkgcache-1.0.2/pkgcache/man/is_async.Rd |only pkgcache-1.0.2/pkgcache/man/is_deferred.Rd |only pkgcache-1.0.2/pkgcache/man/run_event_loop.Rd |only pkgcache-1.0.2/pkgcache/man/synchronise.Rd |only pkgcache-1.0.2/pkgcache/man/when_all.Rd |only pkgcache-1.0.2/pkgcache/man/when_some.Rd |only pkgcache-1.0.3/pkgcache/DESCRIPTION | 6 pkgcache-1.0.3/pkgcache/MD5 | 60 ++------ pkgcache-1.0.3/pkgcache/NAMESPACE | 51 ------- pkgcache-1.0.3/pkgcache/NEWS.md | 11 + pkgcache-1.0.3/pkgcache/R/aaa-async.R | 98 +++++++------- pkgcache-1.0.3/pkgcache/R/async-http.R | 6 pkgcache-1.0.3/pkgcache/R/cache-api.R | 10 - pkgcache-1.0.3/pkgcache/R/cache-dirs.R | 1 pkgcache-1.0.3/pkgcache/R/metadata-cache.R | 114 +++++++++++------ pkgcache-1.0.3/pkgcache/R/onload.R | 11 - pkgcache-1.0.3/pkgcache/R/package-cache.R | 6 pkgcache-1.0.3/pkgcache/R/utils.R | 9 + pkgcache-1.0.3/pkgcache/man/cranlike_metadata_cache.Rd | 29 ++-- pkgcache-1.0.3/pkgcache/man/meta_cache_deps.Rd | 6 pkgcache-1.0.3/pkgcache/man/package_cache.Rd | 4 47 files changed, 208 insertions(+), 214 deletions(-)
Title: Extra Image Processing Library Based on 'imager'
Description: Providing advanced functions for image processing based on the package 'imager'.
Author: Shota Ochi [aut, cre],
Guoshen Yu [ctb, cph],
Guillermo Sapiro [ctb, cph],
Catalina Sbert [ctb, cph],
Image Processing On Line [cph],
Pascal Getreuer [ctb, cph]
Maintainer: Shota Ochi <shotaochi1990@gmail.com>
Diff between imagerExtra versions 1.3.0 dated 2018-11-28 and 1.3.1 dated 2019-01-11
DESCRIPTION | 9 ++++---- MD5 | 38 ++++++++++++++++++------------------- R/OCR.R | 7 ++++-- R/local_adaptive_thresholding.R | 2 - R/misc.R | 2 - build/vignette.rds |binary inst/doc/OCR_with_imagerExtra.R | 9 ++++---- inst/doc/OCR_with_imagerExtra.Rmd | 10 +++++---- inst/doc/OCR_with_imagerExtra.html | 30 +++++++++++++++++++++++++---- inst/doc/gettingstarted.R | 2 - inst/doc/gettingstarted.Rmd | 4 +-- inst/doc/gettingstarted.html | 36 ++++++++++++++++++++++++++++------- inst/doc/treat_colorimage.html | 28 ++++++++++++++++++++++++--- man/EqualizeADP.Rd | 3 +- man/OCR.Rd | 8 ++++--- man/ThresholdAdaptive.Rd | 2 - man/imagerExtra.Rd | 2 - tests/testthat/test_OCR.R | 4 +++ vignettes/OCR_with_imagerExtra.Rmd | 10 +++++---- vignettes/gettingstarted.Rmd | 4 +-- 20 files changed, 146 insertions(+), 64 deletions(-)
Title: Hierarchical Climate Regionalization
Description: A tool for Hierarchical Climate Regionalization applicable to any correlation-based clustering.
It adds several features and a new clustering method (called, 'regional' linkage) to hierarchical
clustering in R ('hclust' function in 'stats' library): data regridding, coarsening spatial resolution,
geographic masking, contiguity-constrained clustering, data filtering by mean and/or variance
thresholds, data preprocessing (detrending, standardization, and PCA), faster correlation function
with preliminary big data support, different clustering methods, hybrid hierarchical clustering,
multivariate clustering (MVC), cluster validation, visualization of regionalization results, and
exporting region map and mean timeseries into NetCDF-4 file.
Author: Hamada S. Badr [aut, cre], Benjamin F. Zaitchik [aut], Amin K. Dezfuli [aut]
Maintainer: Hamada S. Badr <badr@jhu.edu>
Diff between HiClimR versions 2.1.1 dated 2019-01-03 and 2.1.3 dated 2019-01-11
DESCRIPTION | 8 ++++---- MD5 | 41 +++++++++++++++++++++-------------------- R/HiClimR.R | 6 ++++-- R/HiClimR2nc.R | 6 ++++-- R/coarseR.R | 4 +++- R/fastCor.R | 4 +++- R/geogMask.R | 8 +++++--- R/grid2D.R | 4 +++- R/minSigCor.R | 4 +++- R/validClimR.R | 4 +++- README.md | 54 +++++++++++++++++++++++++++++++++++------------------- inst/WORDLIST |only man/HiClimR.Rd | 39 +++++++++++++++++++++------------------ man/HiClimR2nc.Rd | 4 ++++ man/TestCase.Rd | 2 +- man/WorldMask.Rd | 2 +- man/coarseR.Rd | 2 +- man/fastCor.Rd | 2 +- man/geogMask.Rd | 12 ++++++------ man/minSigCor.Rd | 6 +++--- man/validClimR.Rd | 6 +++--- src/HiClimR.f90 | 2 ++ 22 files changed, 131 insertions(+), 89 deletions(-)
Title: Bayesian Latent Variable Analysis
Description: Fit a variety of Bayesian latent variable models, including confirmatory
factor analysis, structural equation models, and latent growth curve models.
Author: Edgar Merkle [aut, cre] (<https://orcid.org/0000-0001-7158-0653>),
Yves Rosseel [aut],
Mauricio Garnier-Villarreal [ctb],
Terrence D. Jorgensen [ctb],
Huub Hoofs [ctb],
Rens van de Schoot [ctb]
Maintainer: Edgar Merkle <merklee@missouri.edu>
Diff between blavaan versions 0.3-3 dated 2018-10-31 and 0.3-4 dated 2019-01-11
DESCRIPTION | 6 MD5 | 27 - NAMESPACE | 5 NEWS | 8 R/blav_object_methods.R | 163 ++----- R/blav_utils.R | 10 R/blavaan.R | 3 R/postpred.R | 564 ++++++++++++++++----------- inst/testdata/sysdata.rda |binary man/bcfa.Rd | 3 man/bgrowth.Rd | 3 man/blavaan.Rd | 3 man/bsem.Rd | 3 man/standardizedPosterior.Rd |only tests/testthat/tests.blavaanobject-methods.R | 3 15 files changed, 431 insertions(+), 370 deletions(-)
Title: Import Various Northern and Southern Hemisphere Climate Indices
Description: Downloads Southern Oscillation Index, Oceanic Nino
Index, North Pacific Gyre Oscillation data, North Atlantic Oscillation
and Arctic Oscillation. Data sources are described in the README file.
Author: Sam Albers [aut, cre] (<https://orcid.org/0000-0002-9270-7884>)
Maintainer: Sam Albers <sam.albers@gmail.com>
Diff between rsoi versions 0.4.0 dated 2018-12-02 and 0.5.0 dated 2019-01-11
rsoi-0.4.0/rsoi/R/data.R |only rsoi-0.4.0/rsoi/data |only rsoi-0.4.0/rsoi/man/enso.Rd |only rsoi-0.5.0/rsoi/DESCRIPTION | 10 +- rsoi-0.5.0/rsoi/MD5 | 44 ++++++------ rsoi-0.5.0/rsoi/NEWS.md | 7 ++ rsoi-0.5.0/rsoi/R/download-ao.R | 10 ++ rsoi-0.5.0/rsoi/R/download-enso.R | 8 +- rsoi-0.5.0/rsoi/R/download-nao.R | 10 ++ rsoi-0.5.0/rsoi/R/download-npgo.R | 14 +++- rsoi-0.5.0/rsoi/R/download-oni.R | 16 +++- rsoi-0.5.0/rsoi/R/download-soi.R | 14 +++- rsoi-0.5.0/rsoi/R/utils.R | 20 +++++ rsoi-0.5.0/rsoi/README.md | 69 +++++++------------- rsoi-0.5.0/rsoi/man/download_ao.Rd | 2 rsoi-0.5.0/rsoi/man/download_enso.Rd | 9 +- rsoi-0.5.0/rsoi/man/download_nao.Rd | 2 rsoi-0.5.0/rsoi/man/download_npgo.Rd | 2 rsoi-0.5.0/rsoi/man/download_oni.Rd | 2 rsoi-0.5.0/rsoi/man/download_soi.Rd | 2 rsoi-0.5.0/rsoi/man/figures/plot-1.png |binary rsoi-0.5.0/rsoi/man/rsoi-package.Rd | 2 rsoi-0.5.0/rsoi/tests/testthat/helper.R |only rsoi-0.5.0/rsoi/tests/testthat/test_download_.R | 19 +++-- rsoi-0.5.0/rsoi/tests/testthat/test_download_enso.R | 40 ----------- 25 files changed, 170 insertions(+), 132 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-11-26 1.1.6
2018-05-11 1.0.5
Title: Latent Variable Gaussian Process Modeling with Qualitative and
Quantitative Input Variables
Description: Fit response surfaces for datasets with latent-variable Gaussian process modeling, predict responses for new inputs, and plot latent variables locations in the latent space (only 1D or 2D).
The input variables of the datasets can be quantitative, qualitative/categorical or mixed.
The output variable of the datasets is a scalar (quantitative).
The optimization of the likelihood function is done using a successive approximation/relaxation algorithm similar to another GP modeling package "GPM".
The modeling method is published in "A Latent Variable Approach to Gaussian Process Modeling with Qualitative and Quantitative Factors"
by Yichi Zhang, Siyu Tao, Wei Chen, and Daniel W. Apley (2018) <arXiv:1806.07504>. The package is developed in IDEAL of Northwestern University.
Author: Siyu Tao, Yichi Zhang, Daniel W. Apley, Wei Chen
Maintainer: Siyu Tao <siyutao2020@u.northwestern.edu>
Diff between LVGP versions 2.1.4 dated 2018-11-14 and 2.1.5 dated 2019-01-11
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/LVGP_plot.R | 1 - data/math_example.rda |binary 4 files changed, 7 insertions(+), 8 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-02-01 3.0.0
2016-05-11 2.2.2
2015-07-08 2.2
2014-10-27 2.1
2014-07-04 2.0
2014-03-03 1.8
2013-12-12 1.6.6
2013-09-03 1.6
2013-05-22 1.01
2012-11-28 0.96
Title: Dirichlet Regression in R
Description: Implements Dirichlet regression models in R.
Author: Marco Johannes Maier [cre, aut]
Maintainer: ORPHANED
Diff between DirichletReg versions 0.6-3 dated 2015-11-12 and 0.6-3.1 dated 2019-01-11
DESCRIPTION | 13 MD5 | 17 build/partial.rdb |binary build/vignette.rds |binary inst/doc/DirichletReg-vig.R | 824 ++++++++++++++++++++--------------------- inst/doc/DirichletReg-vig.Rnw | 2 inst/doc/DirichletReg-vig.pdf |binary man/ReadingSkills.Rd | 2 src/init.c |only vignettes/DirichletReg-vig.Rnw | 2 10 files changed, 434 insertions(+), 426 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-06-06 0.1.1
2017-06-02 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-07-19 1.0.4
2018-05-06 1.0.3
2018-04-03 1.0.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-11-18 0.1.7
2016-12-16 0.1.6
2016-11-30 0.1.4
2016-11-26 0.1.2
2016-07-31 0.1.1
2016-07-26 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-11-19 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-07-12 1.2
2017-11-02 1.1
2016-09-30 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-07-10 0.1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-11-03 2.0.7
2014-08-19 2.0.5
2013-12-10 2.0.3
2013-12-10 2.0.4
2013-05-23 2.0.2
2013-04-16 2.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-05-24 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-10-16 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-11-08 1.2.5
2015-10-16 1.2.4
2015-09-12 1.2.3
2015-06-05 1.2.2
2015-05-13 1.2.1
2014-09-09 1.2.0
2014-04-10 1.1.1
2014-03-21 1.1.0
2013-12-08 1.0.1
2013-12-07 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-10-31 0.1.2
2018-10-16 0.1.1.1
2018-07-26 0.1.1
2018-04-17 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-07-13 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-12-16 0.2.0