Title: Soft Clustering Algorithms
Description: It contains soft clustering algorithms, in particular approaches derived from rough set theory: Lingras & West original rough k-means, Peters' refined rough k-means, and PI rough k-means. It also contains classic k-means and a corresponding illustrative demo.
Author: G. Peters (Ed.)
Maintainer: G. Peters <peters.projects@outlook.com>
Diff between SoftClustering versions 1.1902 dated 2019-02-03 and 1.1902.2 dated 2019-02-03
DESCRIPTION | 6 +++--- MD5 | 20 ++++++++++---------- R/HardkMeansDemo.r | 4 ++-- R/RoughClustering.r | 42 ++++++++++++++++++++++++++++-------------- man/HardKMeans.Rd | 4 ++-- man/HardKMeansDemo.Rd | 4 ++-- man/RoughKMeans_LW.Rd | 14 +++++++++----- man/RoughKMeans_PE.Rd | 8 +++++--- man/RoughKMeans_PI.Rd | 8 +++++--- man/RoughKMeans_SHELL.Rd | 17 +++++++++++++++++ man/normalizeMatrix.Rd | 2 +- 11 files changed, 84 insertions(+), 45 deletions(-)
More information about SoftClustering at CRAN
Permanent link
Title: Aligned Rank Transform
Description: The Aligned Rank Transform for nonparametric
factorial ANOVAs as described by J. O. Wobbrock,
L. Findlater, D. Gergle, & J. J. Higgins, "The Aligned
Rank Transform for nonparametric factorial analyses
using only ANOVA procedures", CHI 2011 <DOI:10.1145/1978942.1978963>.
Author: Matthew Kay [aut, cre],
Jacob O. Wobbrock [aut]
Maintainer: Matthew Kay <mjskay@umich.edu>
Diff between ARTool versions 0.10.5 dated 2018-07-09 and 0.10.6 dated 2019-02-03
DESCRIPTION | 11 MD5 | 36 +- NEWS.md |only R/anova.art.R | 414 +++++++++++++-------------- R/art.R | 562 ++++++++++++++++++------------------ R/artlm.R | 168 +++++----- README.md |only build/vignette.rds |binary inst/CITATION | 64 ++-- inst/doc/art-contrasts.Rmd | 604 +++++++++++++++++++-------------------- inst/doc/art-contrasts.html | 612 +++++++++++++++++++++++++++------------- inst/doc/art-effect-size.Rmd | 358 +++++++++++------------ inst/doc/art-effect-size.html | 418 +++++++++++++++++++++------ man/anova.art.Rd | 7 tests/testthat.R | 8 tests/testthat/test.anova.art.R | 4 tests/testthat/test.art.R | 338 +++++++++++----------- tests/testthat/test.artlm.R | 15 vignettes/art-contrasts.Rmd | 604 +++++++++++++++++++-------------------- vignettes/art-effect-size.Rmd | 358 +++++++++++------------ 20 files changed, 2526 insertions(+), 2055 deletions(-)
Title: Raster Time Series Analysis
Description: This framework aims to provide classes and methods for manipulating and processing of raster time series data (e.g. a time series of satellite images).
Author: Babak Naimi
Maintainer: Babak Naimi <naimi.b@gmail.com>
Diff between rts versions 1.0-47 dated 2018-10-19 and 1.0-49 dated 2019-02-03
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/cellFrom.R | 22 +++++++++++++++------- inst/external/ModisLPV6.rds |binary man/cellFromXY.Rd | 9 +++++---- 5 files changed, 28 insertions(+), 19 deletions(-)
Title: Development Tools for 'SpaDES' and 'SpaDES' Modules
Description: Provides 'RStudio' addins for 'SpaDES' packages and 'SpaDES' module
development. See '?SpaDES.addins' for an overview of the tools provided.
Author: Alex M Chubaty [aut, cre] (<https://orcid.org/0000-0001-7146-8135>),
Her Majesty the Queen in Right of Canada, as represented by the
Minister of Natural Resources Canada [cph]
Maintainer: Alex M Chubaty <alex.chubaty@gmail.com>
Diff between SpaDES.addins versions 0.1.1 dated 2018-02-02 and 0.1.2 dated 2019-02-03
DESCRIPTION | 19 +-- MD5 | 23 ++-- NAMESPACE | 1 NEWS.md | 6 + R/reproducible-cache.R |only R/spades-modules.R | 2 build/vignette.rds |binary inst/WORDLIST |only inst/doc/i-rstudio-addins.Rmd | 4 inst/doc/i-rstudio-addins.html | 229 +++++------------------------------------ inst/rstudio/addins.dcf | 5 man/addin_clearCache.Rd |only man/spades-addins-package.Rd | 2 vignettes/i-rstudio-addins.Rmd | 4 14 files changed, 69 insertions(+), 226 deletions(-)
Title: Access to the 'Vagalume' API
Description: Provides access to the 'Vagalume' API <https://api.vagalume.com.br>.
The data extracted is basically lyrics of songs and information about
artists/bands.
Author: Bruna Wundervald
Maintainer: Bruna Wundervald <brunadaviesw@gmail.com>
Diff between vagalumeR versions 0.1.4 dated 2018-11-22 and 0.1.6 dated 2019-02-03
vagalumeR-0.1.4/vagalumeR/R/discography.R |only vagalumeR-0.1.4/vagalumeR/man/discography.Rd |only vagalumeR-0.1.6/vagalumeR/DESCRIPTION | 10 ++-- vagalumeR-0.1.6/vagalumeR/MD5 | 14 +++--- vagalumeR-0.1.6/vagalumeR/NAMESPACE | 3 - vagalumeR-0.1.6/vagalumeR/R/albums.R |only vagalumeR-0.1.6/vagalumeR/R/genre.R |only vagalumeR-0.1.6/vagalumeR/R/lyrics.R | 59 ++++++++++++++------------- vagalumeR-0.1.6/vagalumeR/R/utils.R | 5 +- vagalumeR-0.1.6/vagalumeR/man/albums.Rd |only vagalumeR-0.1.6/vagalumeR/man/genre.Rd |only 11 files changed, 51 insertions(+), 40 deletions(-)
Title: Robust Linear Mixed Effects Models
Description: A method to fit linear mixed effects models robustly.
Robustness is achieved by modification of the scoring equations
combined with the Design Adaptive Scale approach.
Author: Manuel Koller
Maintainer: Manuel Koller <koller.manuel@gmail.com>
Diff between robustlmm versions 2.2-1 dated 2018-04-29 and 2.3 dated 2019-02-03
DESCRIPTION | 11 - MD5 | 24 +-- R/helpers.R | 10 - R/rlmer.R | 244 ++++++++++---------------------- build/vignette.rds |binary inst/doc/rlmer.pdf |binary man/rlmer.Rd | 4 tests/compare-methods.R | 5 tests/compare-methods.Rout.save | 25 +-- tests/genericFunctions.R | 5 tests/getME.R | 2 tests/getME.Rout.save | 9 - tests/multipleGroupingFactorsTestData.R | 8 - 13 files changed, 130 insertions(+), 217 deletions(-)
Title: Imprecise Imputation for Statistical Matching
Description: Imputing blockwise missing data by imprecise imputation,
featuring a domain-based, variable-wise, and case-wise strategy.
Furthermore, the estimation of lower and upper bounds for
unconditional and conditional probabilities based on the obtained
imprecise data is implemented.
Additionally, two utility functions are supplied: one to check
whether variables in a data set contain set-valued observations;
and another to merge two already imprecisely imputed data.
The method is described in a technical report by Endres, Fink and
Augustin (2018, <doi:10.5282/ubm/epub.42423>).
Author: Paul Fink [aut, cre],
Eva Endres [aut],
Melissa Schmoll [ctb]
Maintainer: Paul Fink <paul.fink@stat.uni-muenchen.de>
Diff between impimp versions 0.3.0 dated 2018-11-23 and 0.3.1 dated 2019-02-03
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- R/imimp_event.R | 22 +++++++++++++++++----- R/impreciseImputation.R | 14 +++++++++++--- R/rbindimpimp.R | 36 ++++++++++++++++++++++++++++++------ inst/NEWS.Rd | 26 ++++++++++++++++++++++++++ man/impimp.Rd | 4 +++- man/impimp_event.Rd | 19 ++++++++++++++----- 8 files changed, 112 insertions(+), 31 deletions(-)
Title: Access EPA 'ECHO' Data
Description: An R interface to United States Environmental
Protection Agency (EPA) Environmental Compliance
History Online ('ECHO') Application Program Interface
(API). 'ECHO' provides information about EPA permitted
facilities, discharges, and other reporting info
associated with permitted entities. Data are obtained
from <https://echo.epa.gov/>.
Author: Michael Schramm [aut, cre]
Maintainer: Michael Schramm <michael.schramm@ag.tamu.edu>
Diff between echor versions 0.1.1 dated 2018-09-11 and 0.1.2 dated 2019-02-03
echor-0.1.1/echor/vignettes/introduction |only echor-0.1.2/echor/DESCRIPTION | 10 echor-0.1.2/echor/MD5 | 48 echor-0.1.2/echor/NAMESPACE | 6 echor-0.1.2/echor/NEWS.md | 10 echor-0.1.2/echor/R/helpers.R |only echor-0.1.2/echor/R/water.R | 148 - echor-0.1.2/echor/README.md | 105 - echor-0.1.2/echor/build/vignette.rds |binary echor-0.1.2/echor/inst/doc/introduction.R | 21 echor-0.1.2/echor/inst/doc/introduction.Rmd | 25 echor-0.1.2/echor/inst/doc/introduction.html | 1249 +++---------- echor-0.1.2/echor/man/downloadDMRs.Rd |only echor-0.1.2/echor/man/echoGetEffluent.Rd | 4 echor-0.1.2/echor/man/figures/README-example3-1.png |binary echor-0.1.2/echor/man/figures/README-unnamed-chunk-2-1.png |binary echor-0.1.2/echor/vignettes/int |only echor-0.1.2/echor/vignettes/introduction.Rmd | 25 18 files changed, 577 insertions(+), 1074 deletions(-)
Title: Core Utilities for Developing and Running Spatially Explicit
Discrete Event Simulation Models
Description: Provide the core discrete event simulation (DES) framework for
implementing spatially explicit simulation models. The core DES components
facilitate modularity, and easily enable the user to include additional
functionality by running user-built simulation modules. Now includes (experimental)
conditional scheduling.
Author: Alex M Chubaty [aut, cre] (<https://orcid.org/0000-0001-7146-8135>),
Eliot J B McIntire [aut] (<https://orcid.org/0000-0002-6914-8316>),
Yong Luo [ctb],
Steve Cumming [ctb],
Ceres Barros [ctb] (<https://orcid.org/0000-0003-4036-977X>),
Her Majesty the Queen in Right of Canada, as represented by the
Minister of Natural Resources Canada [cph]
Maintainer: Alex M Chubaty <alex.chubaty@gmail.com>
Diff between SpaDES.core versions 0.2.3 dated 2018-11-18 and 0.2.4 dated 2019-02-03
SpaDES.core-0.2.3/SpaDES.core/man/makeMemoiseable.Rd |only SpaDES.core-0.2.4/SpaDES.core/DESCRIPTION | 34 SpaDES.core-0.2.4/SpaDES.core/MD5 | 139 +- SpaDES.core-0.2.4/SpaDES.core/NAMESPACE | 15 SpaDES.core-0.2.4/SpaDES.core/NEWS.md | 48 SpaDES.core-0.2.4/SpaDES.core/R/POM.R | 14 SpaDES.core-0.2.4/SpaDES.core/R/cache.R | 216 ++-- SpaDES.core-0.2.4/SpaDES.core/R/check.R | 26 SpaDES.core-0.2.4/SpaDES.core/R/code-checking.R | 56 - SpaDES.core-0.2.4/SpaDES.core/R/copy.R | 51 - SpaDES.core-0.2.4/SpaDES.core/R/downloadData.R | 9 SpaDES.core-0.2.4/SpaDES.core/R/load.R | 9 SpaDES.core-0.2.4/SpaDES.core/R/misc-methods.R | 92 + SpaDES.core-0.2.4/SpaDES.core/R/module-define.R | 9 SpaDES.core-0.2.4/SpaDES.core/R/module-dependencies-methods.R | 5 SpaDES.core-0.2.4/SpaDES.core/R/module-repository.R | 10 SpaDES.core-0.2.4/SpaDES.core/R/module-template.R | 11 SpaDES.core-0.2.4/SpaDES.core/R/moduleMetadata.R | 60 - SpaDES.core-0.2.4/SpaDES.core/R/objectSynonyms.R |only SpaDES.core-0.2.4/SpaDES.core/R/plotting-diagrams.R | 22 SpaDES.core-0.2.4/SpaDES.core/R/plotting.R | 7 SpaDES.core-0.2.4/SpaDES.core/R/save.R | 2 SpaDES.core-0.2.4/SpaDES.core/R/simList-accessors.R | 123 +- SpaDES.core-0.2.4/SpaDES.core/R/simList-class.R | 3 SpaDES.core-0.2.4/SpaDES.core/R/simulation-parseModule.R | 129 +- SpaDES.core-0.2.4/SpaDES.core/R/simulation-simInit.R | 299 ++++- SpaDES.core-0.2.4/SpaDES.core/R/simulation-spades.R | 418 ++++++-- SpaDES.core-0.2.4/SpaDES.core/R/spades-core-package.R | 25 SpaDES.core-0.2.4/SpaDES.core/R/suppliedElsewhere.R | 34 SpaDES.core-0.2.4/SpaDES.core/R/times.R | 19 SpaDES.core-0.2.4/SpaDES.core/R/zzz.R | 55 - SpaDES.core-0.2.4/SpaDES.core/build/vignette.rds |binary SpaDES.core-0.2.4/SpaDES.core/inst/WORDLIST | 153 ++- SpaDES.core-0.2.4/SpaDES.core/inst/doc/i-introduction.Rmd | 2 SpaDES.core-0.2.4/SpaDES.core/inst/doc/i-introduction.html | 28 SpaDES.core-0.2.4/SpaDES.core/inst/doc/ii-modules.R | 7 SpaDES.core-0.2.4/SpaDES.core/inst/doc/ii-modules.Rmd | 11 SpaDES.core-0.2.4/SpaDES.core/inst/doc/ii-modules.html | 50 SpaDES.core-0.2.4/SpaDES.core/inst/doc/iii-cache.R |only SpaDES.core-0.2.4/SpaDES.core/inst/doc/iii-cache.Rmd |only SpaDES.core-0.2.4/SpaDES.core/inst/doc/iii-cache.html |only SpaDES.core-0.2.4/SpaDES.core/man/SpaDES.core-package.Rd | 16 SpaDES.core-0.2.4/SpaDES.core/man/checkParams.Rd | 11 SpaDES.core-0.2.4/SpaDES.core/man/doEvent.Rd | 2 SpaDES.core-0.2.4/SpaDES.core/man/downloadData.Rd | 2 SpaDES.core-0.2.4/SpaDES.core/man/downloadModule.Rd | 6 SpaDES.core-0.2.4/SpaDES.core/man/makeMemoisable.Rd |only SpaDES.core-0.2.4/SpaDES.core/man/objSize.simList.Rd | 4 SpaDES.core-0.2.4/SpaDES.core/man/objectSynonyms.Rd |only SpaDES.core-0.2.4/SpaDES.core/man/paddedFloatToChar.Rd | 3 SpaDES.core-0.2.4/SpaDES.core/man/remoteFileSize.Rd | 2 SpaDES.core-0.2.4/SpaDES.core/man/robustDigest.Rd | 16 SpaDES.core-0.2.4/SpaDES.core/man/scheduleConditionalEvent.Rd |only SpaDES.core-0.2.4/SpaDES.core/man/scheduleEvent.Rd | 10 SpaDES.core-0.2.4/SpaDES.core/man/setPaths.Rd | 6 SpaDES.core-0.2.4/SpaDES.core/man/simInit.Rd | 24 SpaDES.core-0.2.4/SpaDES.core/man/simInitAnd.Rd | 4 SpaDES.core-0.2.4/SpaDES.core/man/simList-accessors-events.Rd | 9 SpaDES.core-0.2.4/SpaDES.core/man/simList-accessors-inout.Rd | 11 SpaDES.core-0.2.4/SpaDES.core/man/simList-accessors-paths.Rd | 10 SpaDES.core-0.2.4/SpaDES.core/man/suppliedElsewhere.Rd | 8 SpaDES.core-0.2.4/SpaDES.core/tests/testthat/helper-initTests.R | 2 SpaDES.core-0.2.4/SpaDES.core/tests/testthat/test-cache.R | 56 - SpaDES.core-0.2.4/SpaDES.core/tests/testthat/test-conditionalEvents.R |only SpaDES.core-0.2.4/SpaDES.core/tests/testthat/test-load.R | 16 SpaDES.core-0.2.4/SpaDES.core/tests/testthat/test-mod.R |only SpaDES.core-0.2.4/SpaDES.core/tests/testthat/test-module-deps-methods.R | 12 SpaDES.core-0.2.4/SpaDES.core/tests/testthat/test-multipleModulePaths.R |only SpaDES.core-0.2.4/SpaDES.core/tests/testthat/test-objectSynonyms.R |only SpaDES.core-0.2.4/SpaDES.core/tests/testthat/test-paths.R | 17 SpaDES.core-0.2.4/SpaDES.core/tests/testthat/test-simList.R | 9 SpaDES.core-0.2.4/SpaDES.core/tests/testthat/test-simulation.R | 509 ++++++---- SpaDES.core-0.2.4/SpaDES.core/tests/testthat/test-timeunits.R | 39 SpaDES.core-0.2.4/SpaDES.core/tests/testthat/test-userSuppliedObjs.R | 10 SpaDES.core-0.2.4/SpaDES.core/vignettes/i-introduction.Rmd | 2 SpaDES.core-0.2.4/SpaDES.core/vignettes/ii-modules.Rmd | 11 SpaDES.core-0.2.4/SpaDES.core/vignettes/iii-cache.Rmd |only 77 files changed, 2073 insertions(+), 945 deletions(-)
Title: Develop and Run Spatially Explicit Discrete Event Simulation
Models
Description: Metapackage for implementing a variety of event-based models, with
a focus on spatially explicit models. These include raster-based,
event-based, and agent-based models. The core simulation components
(provided by 'SpaDES.core') are built upon a discrete event simulation (DES;
see Matloff (2011) ch 7.8.3 <https://nostarch.com/artofr.htm>)
framework that facilitates modularity, and easily enables the user to
include additional functionality by running user-built simulation modules
(see also 'SpaDES.tools'). Included are numerous tools to visualize rasters
and other maps (via 'quickPlot'), and caching methods for reproducible
simulations (via 'reproducible'). Additional functionality is provided by
the 'SpaDES.addins' and 'SpaDES.shiny' packages.
Author: Alex M Chubaty [aut, cre] (<https://orcid.org/0000-0001-7146-8135>),
Eliot J B McIntire [aut] (<https://orcid.org/0000-0002-6914-8316>),
Yong Luo [ctb],
Steve Cumming [ctb],
Her Majesty the Queen in Right of Canada, as represented by the
Minister of Natural Resources Canada [cph]
Maintainer: Alex M Chubaty <alex.chubaty@gmail.com>
Diff between SpaDES versions 2.0.2 dated 2018-06-15 and 2.0.3 dated 2019-02-03
SpaDES-2.0.2/SpaDES/inst/dict |only SpaDES-2.0.2/SpaDES/inst/doc/iii-cache.R |only SpaDES-2.0.2/SpaDES/inst/doc/iii-cache.Rmd |only SpaDES-2.0.2/SpaDES/inst/doc/iii-cache.html |only SpaDES-2.0.2/SpaDES/tests |only SpaDES-2.0.2/SpaDES/vignettes/iii-cache.Rmd |only SpaDES-2.0.3/SpaDES/DESCRIPTION | 23 ++++----- SpaDES-2.0.3/SpaDES/MD5 | 24 ++++----- SpaDES-2.0.3/SpaDES/NEWS.md | 53 ++++++++++++---------- SpaDES-2.0.3/SpaDES/R/spades-package.R | 2 SpaDES-2.0.3/SpaDES/README.md | 27 +++++------ SpaDES-2.0.3/SpaDES/build/vignette.rds |binary SpaDES-2.0.3/SpaDES/inst/WORDLIST |only SpaDES-2.0.3/SpaDES/inst/doc/getting-started.R |only SpaDES-2.0.3/SpaDES/inst/doc/getting-started.Rmd |only SpaDES-2.0.3/SpaDES/inst/doc/getting-started.html |only SpaDES-2.0.3/SpaDES/man/SpaDES-package.Rd | 4 - SpaDES-2.0.3/SpaDES/vignettes/getting-started.Rmd |only 18 files changed, 70 insertions(+), 63 deletions(-)
Title: Access London Natural History Museum Host-Helminth Record
Database
Description: Access to large host-parasite data is often hampered by the
availability of data and difficulty in obtaining it in a programmatic way
to encourage analyses. 'helminthR' provides a programmatic interface to the
London Natural History Museum's host-parasite database, one of the largest
host-parasite databases existing currently <http://www.nhm.ac.uk/research-curation/scientific-resources/taxonomy-systematics/host-parasites/>. The package allows the user
to query by host species, parasite species, and geographic location.
Author: Tad Dallas
Maintainer: Tad Dallas <tad.a.dallas@gmail.com>
Diff between helminthR versions 1.0.6 dated 2018-08-15 and 1.0.7 dated 2019-02-03
helminthR-1.0.6/helminthR/R/listLocations.R |only helminthR-1.0.6/helminthR/man/listLocations.Rd |only helminthR-1.0.7/helminthR/DESCRIPTION | 13 ++-- helminthR-1.0.7/helminthR/MD5 | 38 ++++++------- helminthR-1.0.7/helminthR/NAMESPACE | 3 - helminthR-1.0.7/helminthR/NEWS.md | 10 +++ helminthR-1.0.7/helminthR/R/cleanData.R | 9 ++- helminthR-1.0.7/helminthR/R/findHost.R | 6 +- helminthR-1.0.7/helminthR/R/findLocation.R | 10 ++- helminthR-1.0.7/helminthR/R/findParasite.R | 12 ++-- helminthR-1.0.7/helminthR/R/helminthR-package.R | 2 helminthR-1.0.7/helminthR/R/locations.R | 9 ++- helminthR-1.0.7/helminthR/build/vignette.rds |binary helminthR-1.0.7/helminthR/inst/doc/helminthR_vignette.Rmd | 6 +- helminthR-1.0.7/helminthR/inst/doc/helminthR_vignette.html | 22 +++---- helminthR-1.0.7/helminthR/man/cleanData.Rd | 2 helminthR-1.0.7/helminthR/man/findHost.Rd | 4 - helminthR-1.0.7/helminthR/man/findLocation.Rd | 5 - helminthR-1.0.7/helminthR/man/findParasite.Rd | 9 +-- helminthR-1.0.7/helminthR/man/locations.Rd | 8 ++ helminthR-1.0.7/helminthR/vignettes/helminthR_vignette.Rmd | 6 +- 21 files changed, 101 insertions(+), 73 deletions(-)
Title: A Collection of Graphon Estimation Methods
Description: Provides a not-so-comprehensive list of methods for estimating graphon,
a symmetric measurable function, from a single or multiple of observed networks.
For a detailed introduction on graphon and popular estimation techniques,
see the paper by Orbanz, P. and Roy, D.M.(2014) <doi:10.1109/TPAMI.2014.2334607>.
It also contains several auxiliary functions for generating sample networks
using various network models and graphons.
Author: Kisung You [aut, cre] (<https://orcid.org/0000-0002-8584-459X>)
Maintainer: Kisung You <kyou@nd.edu>
Diff between graphon versions 0.3.0 dated 2018-09-16 and 0.3.1 dated 2019-02-03
DESCRIPTION | 9 +++++---- MD5 | 32 +++++++++++++++++--------------- NEWS.md |only R/auxiliary.R | 6 +++++- R/est.LG.R | 2 +- R/est.SBA.R | 2 ++ R/est.USVT.R | 2 ++ R/est.nbdsmooth.R | 2 +- R/gmodel.block.R | 4 ++-- R/gmodel.preset.R | 1 - README.md |only build/partial.rdb |binary inst/REFERENCES.bib | 13 +++---------- man/est.LG.Rd | 2 +- man/est.SBA.Rd | 2 ++ man/est.USVT.Rd | 2 ++ man/est.nbdsmooth.Rd | 2 +- man/gmodel.block.Rd | 4 ++-- 18 files changed, 46 insertions(+), 39 deletions(-)
Title: Create Tables from Different Types of Regression
Description: Create regression tables from generalized linear model(GLM), generalized estimating equation(GEE), generalized linear mixed-effects model(GLMM), Cox proportional hazards model, survey-weighted generalized linear model(svyglm) and survey-weighted Cox model results for publication.
Author: Jinseob Kim [aut, cre] (<https://orcid.org/0000-0002-9403-605X>),
Anpanman [cph, fnd]
Maintainer: Jinseob Kim <jinseob2kim@gmail.com>
Diff between jstable versions 0.7.6 dated 2019-02-01 and 0.7.7 dated 2019-02-03
DESCRIPTION | 10 MD5 | 12 NEWS.md | 8 README.md | 12 inst/doc/jstable.html | 1358 +++++++++++++-------------------- tests/testthat/test-CreateTableOneJS.R |only tests/testthat/test-label.R |only tests/testthat/test-regtable.R | 29 8 files changed, 625 insertions(+), 804 deletions(-)
Title: 'fastText' Wrapper for Text Classification and Word
Representation
Description: Learning text representations and text classifiers may rely
on the same simple and efficient approach. 'fastText' is an open-source, free,
lightweight library that allows users to perform both tasks.
It transforms text into continuous vectors that can later
be used on many language related task.
It works on standard, generic hardware (no 'GPU' required).
It also includes model size reduction feature.
'fastText' original source code is available
at <https://github.com/facebookresearch/fastText>.
Author: Michaël Benesty [aut, cre, cph],
Facebook, Inc [cph]
Maintainer: Michaël Benesty <michael@benesty.fr>
Diff between fastrtext versions 0.2.5 dated 2018-01-04 and 0.2.6 dated 2019-02-03
DESCRIPTION | 10 MD5 | 24 - NEWS.md | 10 R/API.R | 3 build/vignette.rds |binary inst/doc/list_commands.html | 320 ++++++++++++++++++++---- inst/doc/supervised_learning.html | 428 ++++++++++++++++++++++++-------- inst/doc/unsupervised_learning.html | 474 ++++++++++++++++++++++++++---------- man/fastrtext.Rd | 17 - man/predict.Rcpp_fastrtext.Rd | 4 src/Makevars | 4 src/fastrtext.cpp | 33 +- src/fasttext/args.cc | 2 13 files changed, 1016 insertions(+), 313 deletions(-)
Title: Easy Use of 'GADM' Shapefiles
Description: Manipulate, assemble, export <http://www.gadm.org> shapefiles. Create choropleth, heatmaps, dots plot, proportional dots and more.
Author: Jean Pierre Decorps [aut, cre],
Morgane Vallee [ctb]
Maintainer: Jean Pierre Decorps <jp.decorps@epiconcept.fr>
Diff between GADMTools versions 3.0-1 dated 2018-11-20 and 3.5-1 dated 2019-02-03
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Title: Credible Visualization for Two-Dimensional Projections of Data
Description: Projections are common dimensionality reduction methods, which represent high-dimensional data in a two-dimensional space. However, when restricting the output space to two dimensions, which results in a two dimensional scatter plot (projection) of the data, low dimensional similarities do not represent high dimensional distances coercively [Thrun, 2018]. This could lead to a misleading interpretation of the underlying structures [Thrun, 2018]. By means of the 3D topographic map the generalized Umatrix is able to depict errors of these two-dimensional scatter plots. The package is based on the book of Thrun, M.C.: "Projection Based Clustering through Self-Organization and Swarm Intelligence" (2018) <DOI:10.1007/978-3-658-20540-9>.
Author: Michael Thrun [aut, cre, cph],
Alfred Ultsch [ths]
Maintainer: Michael Thrun <m.thrun@gmx.net>
Diff between GeneralizedUmatrix versions 1.1.4 dated 2019-01-27 and 1.1.5 dated 2019-02-03
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ build/partial.rdb |binary inst/doc/GeneralizedUmatrix.R | 2 +- inst/doc/GeneralizedUmatrix.Rmd | 2 +- inst/doc/GeneralizedUmatrix.html | 10 +++++----- vignettes/GeneralizedUmatrix.Rmd | 2 +- 7 files changed, 18 insertions(+), 18 deletions(-)
More information about GeneralizedUmatrix at CRAN
Permanent link
Title: Soft Clustering Algorithms
Description: It contains soft clustering algorithms, in particular approaches derived from rough set theory: Lingras & West original rough k-means, Peters' refined rough k-means, and PI rough k-means. It also contains classic k-means and a corresponding illustrative demo.
Author: G. Peters (Ed.)
Maintainer: G. Peters <peters.projects@outlook.com>
Diff between SoftClustering versions 1.1502 dated 2015-02-10 and 1.1902 dated 2019-02-03
SoftClustering-1.1502/SoftClustering/data/DemoDataC2D2a.txt |only SoftClustering-1.1502/SoftClustering/data/initMeansC2D2a.txt |only SoftClustering-1.1502/SoftClustering/data/initMeansC3D2a.txt |only SoftClustering-1.1502/SoftClustering/data/initMeansC4D2a.txt |only SoftClustering-1.1502/SoftClustering/data/initMeansC5D2a.txt |only SoftClustering-1.1902/SoftClustering/DESCRIPTION | 10 + SoftClustering-1.1902/SoftClustering/MD5 | 55 +++++----- SoftClustering-1.1902/SoftClustering/NAMESPACE | 5 SoftClustering-1.1902/SoftClustering/R/DemoDataC2D2a.r |only SoftClustering-1.1902/SoftClustering/R/HardkMeansDemo.r | 13 -- SoftClustering-1.1902/SoftClustering/R/RoughClustering.r | 19 +-- SoftClustering-1.1902/SoftClustering/R/initMeansC2D2a.r |only SoftClustering-1.1902/SoftClustering/R/initMeansC3D2a.r |only SoftClustering-1.1902/SoftClustering/R/initMeansC4D2a.r |only SoftClustering-1.1902/SoftClustering/R/initMeansC5D2a.r |only SoftClustering-1.1902/SoftClustering/data/DemoDataC2D2a.rda |only SoftClustering-1.1902/SoftClustering/data/initMeansC2D2a.rda |only SoftClustering-1.1902/SoftClustering/data/initMeansC3D2a.rda |only SoftClustering-1.1902/SoftClustering/data/initMeansC4D2a.rda |only SoftClustering-1.1902/SoftClustering/data/initMeansC5D2a.rda |only SoftClustering-1.1902/SoftClustering/man/DemoDataC2D2a.Rd | 18 +-- SoftClustering-1.1902/SoftClustering/man/HardKMeans.Rd | 9 - SoftClustering-1.1902/SoftClustering/man/HardKMeansDemo.Rd | 13 +- SoftClustering-1.1902/SoftClustering/man/RoughKMeans_LW.Rd | 9 - SoftClustering-1.1902/SoftClustering/man/RoughKMeans_PE.Rd | 9 - SoftClustering-1.1902/SoftClustering/man/RoughKMeans_PI.Rd | 9 - SoftClustering-1.1902/SoftClustering/man/RoughKMeans_SHELL.Rd | 7 - SoftClustering-1.1902/SoftClustering/man/createLowerMShipMatrix.Rd | 3 SoftClustering-1.1902/SoftClustering/man/datatypeInteger.Rd | 3 SoftClustering-1.1902/SoftClustering/man/initMeansC2D2a.Rd | 18 +-- SoftClustering-1.1902/SoftClustering/man/initMeansC3D2a.Rd | 18 +-- SoftClustering-1.1902/SoftClustering/man/initMeansC4D2a.Rd | 18 +-- SoftClustering-1.1902/SoftClustering/man/initMeansC5D2a.Rd | 18 +-- SoftClustering-1.1902/SoftClustering/man/initializeMeansMatrix.Rd | 3 SoftClustering-1.1902/SoftClustering/man/normalizeMatrix.Rd | 7 - SoftClustering-1.1902/SoftClustering/man/plotRoughKMeans.Rd | 3 36 files changed, 138 insertions(+), 129 deletions(-)
More information about SoftClustering at CRAN
Permanent link
Title: Inference on Prototypes from Clusters of Features
Description: Procedures for testing for group-wide signal in clusters of variables. Tests can be performed for single groups in isolation (univariate) or multiple groups together (multivariate). Specific tests include the exact and approximate (un)selective likelihood ratio tests described in Reid et al (2015), the selective F test and marginal screening prototype test of Reid and Tibshirani (2015). User may pre-specify columns to be included in prototype formation, or allow the function to select them itself. A mixture of these two is also possible. Any variable selection is accounted for using the selective inference framework. Options for non-sampling and hit-and-run null reference distributions.
Author: Stephen Reid
Maintainer: Stephen Reid <sreid1652@gmail.com>
Diff between prototest versions 1.1 dated 2016-01-14 and 1.2 dated 2019-02-03
DESCRIPTION | 10 +++++----- MD5 | 4 ++-- build/partial.rdb |binary 3 files changed, 7 insertions(+), 7 deletions(-)
Title: Partial Least Squares Regression for Cox Models and Related
Techniques
Description: Provides Partial least squares Regression and various regular, sparse or kernel, techniques for fitting Cox models in high dimensional settings <doi:10.1093/bioinformatics/btu660>, Bastien, P., Bertrand, F., Meyer N., Maumy-Bertrand, M. (2015), Deviance residuals-based sparse PLS and sparse kernel PLS regression for censored data, Bioinformatics, 31(3):397-404. Cross validation criteria were studied in <arXiv:1810.02962>, Bertrand, F., Bastien, Ph. and Maumy-Bertrand, M. (2018), Cross validating extensions of kernel, sparse or regular partial least squares regression models to censored data.
Author: Frederic Bertrand [cre, aut] (<https://orcid.org/0000-0002-0837-8281>),
Myriam Maumy-Bertrand [aut] (<https://orcid.org/0000-0002-4615-1512>)
Maintainer: Frederic Bertrand <frederic.bertrand@math.unistra.fr>
Diff between plsRcox versions 1.7.3.1 dated 2018-09-11 and 1.7.4 dated 2019-02-03
DESCRIPTION | 19 ++- MD5 | 85 ++++++++--------- NAMESPACE | 7 + NEWS | 1 NEWS.md |only R/DKplsRcox.R | 2 R/coxDKplsDR.default.R | 2 R/coxDKsplsDR.default.R | 2 R/coxpls.default.R | 150 +++++++++++++++--------------- R/coxplsDR.default.R | 180 ++++++++++++++++++------------------ R/coxsplsDR.default.R | 2 R/plsRcox.R | 2 data/Xmicro.censure_compl_imp.RData |binary data/micro.censure.RData |binary inst/CITATION | 4 man/DKplsRcox.Rd | 4 man/DR_coxph.Rd | 7 + man/Xmicro.censure_compl_imp.Rd | 132 +++++++++++++------------- man/coxDKpls2DR.Rd | 4 man/coxDKplsDR.Rd | 7 + man/coxDKsplsDR.Rd | 7 + man/coxpls.Rd | 4 man/coxpls2.Rd | 4 man/coxpls2DR.Rd | 7 + man/coxpls3.Rd | 4 man/coxpls3DR.Rd | 7 + man/coxplsDR.Rd | 7 + man/coxsplsDR.Rd | 7 + man/cv.autoplsRcox.Rd | 6 + man/cv.coxDKplsDR.Rd | 6 + man/cv.coxDKsplsDR.Rd | 6 + man/cv.coxpls.Rd | 6 + man/cv.coxplsDR.Rd | 6 + man/cv.coxsplsDR.Rd | 8 + man/cv.larsDR.Rd | 4 man/cv.plsRcox.Rd | 6 + man/internal-plsRcox.Rd | 15 +-- man/larsDR_coxph.Rd | 7 + man/micro.censure.Rd | 141 ++++++++++++++-------------- man/plsRcox.Rd | 6 - man/predict.plsRcoxmodel.Rd | 6 - man/print.plsRcoxmodel.Rd | 6 - man/print.summary.plsRcoxmodel.Rd | 6 - man/summary.plsRcoxmodel.Rd | 8 + 44 files changed, 497 insertions(+), 403 deletions(-)
Title: Latin Hypercube Samples
Description: Provides a number of methods for creating and augmenting Latin Hypercube Samples.
Author: Rob Carnell [aut, cre]
Maintainer: Rob Carnell <bertcarnell@gmail.com>
Diff between lhs versions 1.0 dated 2019-01-31 and 1.0.1 dated 2019-02-03
ChangeLog | 4 + DESCRIPTION | 6 - MD5 | 94 +++++++++++++------------- R/augmentLHS.R | 4 - R/createOA.R | 6 + R/create_oalhs.R | 4 - R/geneticLHS.R | 3 R/improvedLHS.r | 3 R/maximinLHS.R | 9 +- R/oa_to_oalhs.R | 9 +- R/optAugmentLHS.R | 4 - R/optSeededLHS.R | 4 - R/optimumLHS.R | 2 README.md | 104 +++++++++++++++-------------- inst/doc/augment_lhs.html | 4 - inst/doc/lhs_basics.html | 4 - inst/doc/lhs_faq.html | 4 - man/augmentLHS.Rd | 4 - man/createBusht.Rd | 3 man/create_oalhs.Rd | 4 - man/geneticLHS.Rd | 3 man/improvedLHS.Rd | 3 man/maximinLHS.Rd | 9 +- man/oa_to_oalhs.Rd | 6 - man/optAugmentLHS.Rd | 4 - man/optSeededLHS.Rd | 4 - man/optimumLHS.Rd | 2 src/COrthogonalArray.cpp | 25 +++--- src/COrthogonalArray.h | 4 - src/LHSCommonDefines.h | 33 ++++----- src/OACommonDefines.h | 13 +-- src/ak3.cpp | 3 src/akconst.cpp | 3 src/akn.cpp | 9 +- src/construct.cpp | 68 ++++++++++--------- src/galois.cpp | 49 ++++++------- src/geneticLHS.cpp | 9 +- src/gfields.cpp | 17 +++- src/lhs_r_utilities.cpp | 14 ++- src/matrix.h | 6 - src/oa.cpp | 136 +++++++++++++++++--------------------- src/oaLHS.cpp | 60 +++++++++++----- src/oa_r.cpp | 13 ++- src/optSeededLHS.cpp | 14 +-- src/optimumLHS.cpp | 17 ++-- src/runif.cpp | 6 - src/utilityLHS.h | 6 - tests/testthat/test-oa_to_oalhs.R | 24 +++--- 48 files changed, 445 insertions(+), 394 deletions(-)
Title: Kalman Filter and Smoother for Exponential Family State Space
Models
Description: State space modelling is an efficient and flexible framework for
statistical inference of a broad class of time series and other data. KFAS
includes computationally efficient functions for Kalman filtering, smoothing,
forecasting, and simulation of multivariate exponential family state space models,
with observations from Gaussian, Poisson, binomial, negative binomial, and gamma
distributions. See the paper by Helske (2017) <doi:10.18637/jss.v078.i10> for details.
Author: Jouni Helske [aut, cre] (<https://orcid.org/0000-0001-7130-793X>)
Maintainer: Jouni Helske <jouni.helske@iki.fi>
Diff between KFAS versions 1.3.3 dated 2018-09-19 and 1.3.4 dated 2019-02-03
ChangeLog | 4 DESCRIPTION | 18 MD5 | 54 - R/KFAS-package.R | 1386 ++++++++++++++++++------------------- R/approxSSM.R | 278 +++---- R/importanceSSM.R | 284 +++---- R/initTheta.R | 52 - R/logLik.SSModel.R | 410 +++++----- R/predict.SSModel.R | 5 R/signals.R | 218 ++--- R/simulateSSM.R | 350 ++++----- build/vignette.rds |binary inst/doc/KFAS.pdf |binary src/approx.f95 | 308 ++++---- src/isample.f95 | 344 ++++----- src/isamplefilter.f95 | 426 +++++------ src/kfilter.f95 | 182 ++-- src/kfilter2.f95 | 188 ++--- src/kfstheta.f95 | 250 +++--- src/ngfilter.f95 | 272 +++---- src/ngloglik.f95 | 312 ++++---- src/ngsmooth.f95 | 250 +++--- src/ptheta.f95 | 254 +++--- src/simfilter.f95 | 292 +++---- src/simgaussian.f95 | 550 +++++++------- src/smoothsim.f95 | 206 ++--- tests/testthat/testBasics.R | 100 +- tests/testthat/testImportanceSSM.R | 64 - 28 files changed, 3534 insertions(+), 3523 deletions(-)
Title: Tools for Eurostat Open Data
Description: Tools to download data from the Eurostat database
<http://ec.europa.eu/eurostat> together with search and
manipulation utilities.
Author: Leo Lahti [aut, cre],
Janne Huovari [aut],
Markus Kainu [aut],
Przemyslaw Biecek [aut],
Joona Lehtomaki [ctb],
Francois Briatte [ctb],
Oliver Reiter [ctb]
Maintainer: ORPHANED
Diff between eurostat versions 3.3.1.2 dated 2019-01-24 and 3.3.1.3 dated 2019-02-03
DESCRIPTION | 6 +-- MD5 | 12 +++---- inst/doc/blogposts.html | 4 +- inst/doc/cheatsheet.html | 4 +- inst/doc/eurostat_tutorial.html | 67 ++++++++++------------------------------ inst/doc/publications.html | 4 +- tests/testthat/test-all.R | 2 - 7 files changed, 33 insertions(+), 66 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-03-01 1.1-1
2016-05-09 1.1-0
Title: 'Rcpp' Dynamic Programming
Description: Dynamic Programming implemented in 'Rcpp'. Includes example partition and out of sample fitting applications. Also supplies additional custom coders for the 'vtreat' package.
Author: John Mount [aut, cre],
Nina Zumel [aut],
Win-Vector LLC [cph]
Maintainer: John Mount <jmount@win-vector.com>
Diff between RcppDynProg versions 0.1.0 dated 2019-01-04 and 0.1.1 dated 2019-02-03
RcppDynProg-0.1.0/RcppDynProg/tests/testthat |only RcppDynProg-0.1.0/RcppDynProg/tests/testthat.R |only RcppDynProg-0.1.1/RcppDynProg/DESCRIPTION | 12 RcppDynProg-0.1.1/RcppDynProg/MD5 | 79 +- RcppDynProg-0.1.1/RcppDynProg/NAMESPACE | 12 RcppDynProg-0.1.1/RcppDynProg/NEWS.md | 9 RcppDynProg-0.1.1/RcppDynProg/R/RcppExports.R | 290 +++++++++- RcppDynProg-0.1.1/RcppDynProg/R/run_package_tests.R |only RcppDynProg-0.1.1/RcppDynProg/R/solve_for_partition.R | 56 + RcppDynProg-0.1.1/RcppDynProg/R/utils.R | 24 RcppDynProg-0.1.1/RcppDynProg/R/xlin_fits_V.R | 42 - RcppDynProg-0.1.1/RcppDynProg/README.md | 13 RcppDynProg-0.1.1/RcppDynProg/inst/doc/RcppDynProg.html | 4 RcppDynProg-0.1.1/RcppDynProg/inst/doc/Segmentation.html | 4 RcppDynProg-0.1.1/RcppDynProg/inst/doc/SegmentationL.html | 4 RcppDynProg-0.1.1/RcppDynProg/inst/unit_tests |only RcppDynProg-0.1.1/RcppDynProg/man/const_cost.Rd | 2 RcppDynProg-0.1.1/RcppDynProg/man/const_cost_logistic.Rd |only RcppDynProg-0.1.1/RcppDynProg/man/const_costs.Rd | 2 RcppDynProg-0.1.1/RcppDynProg/man/const_costs_logistic.Rd |only RcppDynProg-0.1.1/RcppDynProg/man/lin_cost_logistic.Rd |only RcppDynProg-0.1.1/RcppDynProg/man/lin_costs_logistic.Rd |only RcppDynProg-0.1.1/RcppDynProg/man/logistic_fits.Rd |only RcppDynProg-0.1.1/RcppDynProg/man/logistic_solve1.Rd |only RcppDynProg-0.1.1/RcppDynProg/man/run_package_tests.Rd |only RcppDynProg-0.1.1/RcppDynProg/man/solve_for_partition.Rd | 28 RcppDynProg-0.1.1/RcppDynProg/man/solve_for_partitionc.Rd | 28 RcppDynProg-0.1.1/RcppDynProg/man/solve_interval_partition.Rd | 2 RcppDynProg-0.1.1/RcppDynProg/man/solve_interval_partition_k.Rd |only RcppDynProg-0.1.1/RcppDynProg/man/solve_interval_partition_no_k.Rd |only RcppDynProg-0.1.1/RcppDynProg/man/summarize_input.Rd |only RcppDynProg-0.1.1/RcppDynProg/man/xlin_fits.Rd | 6 RcppDynProg-0.1.1/RcppDynProg/man/xlin_pfits.Rd |only RcppDynProg-0.1.1/RcppDynProg/man/xlogistic_fits.Rd |only RcppDynProg-0.1.1/RcppDynProg/src/RcppExports.cpp | 176 ++++++ RcppDynProg-0.1.1/RcppDynProg/src/const_costs.cpp | 59 +- RcppDynProg-0.1.1/RcppDynProg/src/const_costs_logistic.cpp |only RcppDynProg-0.1.1/RcppDynProg/src/input_summary.cpp |only RcppDynProg-0.1.1/RcppDynProg/src/input_summary.h |only RcppDynProg-0.1.1/RcppDynProg/src/lin_costs.cpp | 51 - RcppDynProg-0.1.1/RcppDynProg/src/lin_costs_logistic.cpp |only RcppDynProg-0.1.1/RcppDynProg/src/logistic_regress.cpp |only RcppDynProg-0.1.1/RcppDynProg/src/solve_interval_partition.cpp | 182 +++++- RcppDynProg-0.1.1/RcppDynProg/src/xlin_fits.cpp | 80 +- RcppDynProg-0.1.1/RcppDynProg/src/xlin_pfits.cpp |only RcppDynProg-0.1.1/RcppDynProg/tests/run_tests.R |only 46 files changed, 969 insertions(+), 196 deletions(-)
Title: Generalized Nonlinear Regression Models
Description: A variety of functions to fit linear and nonlinear
regression with a large selection of distributions.
Author: Bruce Swihart [cre, aut],
Jim Lindsey [aut] (Jim created this package, Bruce is maintaining the
CRAN version)
Maintainer: Bruce Swihart <bruce.swihart@gmail.com>
Diff between gnlm versions 1.1.0 dated 2016-12-07 and 1.1.1 dated 2019-02-03
DESCRIPTION | 10 +++++----- MD5 | 29 +++++++++++++++-------------- NAMESPACE | 2 +- NEWS.md | 7 +++++++ R/gnlr.r | 2 +- man/bnlr.Rd | 16 ++++++++-------- man/fit.dist.Rd | 12 ++++++------ man/fmr.Rd | 15 +++++++-------- man/gnlr.Rd | 7 +++---- man/gnlr3.Rd | 15 +++++++-------- man/nlr.Rd | 11 +++++------ man/nordr.Rd | 17 ++++++++--------- man/ordglm.Rd | 9 ++++----- man/rs2.Rd | 7 +++---- man/rs3.Rd | 7 +++---- src/gnlm_init.c |only 16 files changed, 83 insertions(+), 83 deletions(-)