Title: Time Indexes and Time Indexed Series
Description: Functions and S3 classes for time indexes and time indexed
series, which are compatible with FAME frequencies.
Author: Jeff Hallman <jeffhallman@gmail.com>
Maintainer: Brian Salzer <brian.m.salzer@frb.gov>
Diff between tis versions 1.34 dated 2017-12-19 and 1.37 dated 2019-02-07
tis-1.34/tis/src/Makevars.in |only tis-1.34/tis/src/Makevars.win |only tis-1.37/tis/DESCRIPTION | 8 ++++---- tis-1.37/tis/MD5 | 8 +++----- tis-1.37/tis/NEWS | 14 ++++++++++++++ tis-1.37/tis/R/ti.R | 9 ++++++++- 6 files changed, 29 insertions(+), 10 deletions(-)
Title: Rho for Inter Rater Reliability
Description: Rho is used to test the generalization of inter rater reliability
(IRR) statistics. Calculating rho starts by generating a large number of
simulated, fully-coded data sets: a sizable collection of hypothetical
populations, all of which have a kappa value below a given threshold -- which
indicates unacceptable agreement. Then kappa is calculated on a sample from
each of those sets in the collection to see if it is equal to or higher than
the kappa in then real sample. If less than five percent of the distribution
of samples from the simulated data sets is greater than actual observed kappa,
the null hypothesis is rejected and one can conclude that if the two raters had
coded the rest of the data, we would have acceptable agreement (kappa above the
threshold).
Author: Brendan Eagan [aut],
Brad Rogers [aut],
Rebecca Pozen [aut],
Cody L Marquart [cre, aut],
David Williamson Shaffer [aut]
Maintainer: Cody L Marquart <cody.marquart@wisc.edu>
Diff between rhoR versions 1.2.0.0 dated 2018-07-09 and 1.2.1.0 dated 2019-02-07
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- R/kappaSet.R | 2 +- R/rhoSet.R | 6 +++--- data/codeSet.rda |binary data/contingencyTable.rda |binary man/rhoCT.Rd | 7 ++++--- man/rhoK.Rd | 7 ++++--- 8 files changed, 23 insertions(+), 21 deletions(-)
Title: Functions for Tabular Reporting
Description: Create pretty tables for 'HTML', 'Microsoft Word' and 'Microsoft PowerPoint' documents.
Functions are provided to let users create tables, modify and format their content.
It extends package 'officer' that does not contain any feature for customized tabular reporting
and can be used within R markdown documents.
Author: David Gohel [aut, cre],
Maxim Nazarov [ctb] (rmarkdown for docx output)
Maintainer: David Gohel <david.gohel@ardata.fr>
Diff between flextable versions 0.5.0 dated 2019-01-31 and 0.5.1 dated 2019-02-07
flextable-0.5.0/flextable/inst/doc/examples.R |only flextable-0.5.0/flextable/inst/doc/examples.Rmd |only flextable-0.5.0/flextable/inst/doc/examples.html |only flextable-0.5.0/flextable/vignettes/examples.Rmd |only flextable-0.5.1/flextable/DESCRIPTION | 6 flextable-0.5.1/flextable/MD5 | 112 ++-- flextable-0.5.1/flextable/NAMESPACE | 14 flextable-0.5.1/flextable/NEWS | 22 flextable-0.5.1/flextable/R/00_utils.R | 3 flextable-0.5.1/flextable/R/01_fpstruct.R | 61 +- flextable-0.5.1/flextable/R/05_content.R | 12 flextable-0.5.1/flextable/R/as_flextable.R |only flextable-0.5.1/flextable/R/border_fix.R |only flextable-0.5.1/flextable/R/borders.R |only flextable-0.5.1/flextable/R/display.R | 3 flextable-0.5.1/flextable/R/docx_str.R | 6 flextable-0.5.1/flextable/R/flextable.R | 13 flextable-0.5.1/flextable/R/html_str.R | 6 flextable-0.5.1/flextable/R/merge_flextable.R | 44 + flextable-0.5.1/flextable/R/ph_with_flextable.R | 6 flextable-0.5.1/flextable/R/set_headers.R | 102 ++++ flextable-0.5.1/flextable/R/styles.R | 497 +-------------------- flextable-0.5.1/flextable/R/tabpart_add_rows.R | 4 flextable-0.5.1/flextable/R/tabpart_tools.R | 2 flextable-0.5.1/flextable/R/themes.R | 118 ++++ flextable-0.5.1/flextable/build/vignette.rds |binary flextable-0.5.1/flextable/inst/doc/format.R | 75 +-- flextable-0.5.1/flextable/inst/doc/format.Rmd | 150 ++++-- flextable-0.5.1/flextable/inst/doc/format.html | 210 ++++---- flextable-0.5.1/flextable/inst/doc/layout.R | 211 ++++++-- flextable-0.5.1/flextable/inst/doc/layout.Rmd | 436 ++++++++++++++---- flextable-0.5.1/flextable/inst/doc/layout.html | 444 ++++++++++++------ flextable-0.5.1/flextable/inst/doc/overview.R | 31 - flextable-0.5.1/flextable/inst/doc/overview.Rmd | 56 +- flextable-0.5.1/flextable/inst/doc/overview.html | 71 ++- flextable-0.5.1/flextable/man/add_header_footer.Rd | 34 + flextable-0.5.1/flextable/man/align.Rd | 12 flextable-0.5.1/flextable/man/as_flextable.Rd |only flextable-0.5.1/flextable/man/as_grouped_data.Rd |only flextable-0.5.1/flextable/man/border.Rd | 16 flextable-0.5.1/flextable/man/border_inner_h.Rd |only flextable-0.5.1/flextable/man/border_inner_v.Rd |only flextable-0.5.1/flextable/man/border_outer.Rd |only flextable-0.5.1/flextable/man/border_remove.Rd |only flextable-0.5.1/flextable/man/borders.Rd | 169 ------- flextable-0.5.1/flextable/man/fix_border_issues.Rd |only flextable-0.5.1/flextable/man/hline_bottom.Rd |only flextable-0.5.1/flextable/man/hline_top.Rd |only flextable-0.5.1/flextable/man/merge_at.Rd | 11 flextable-0.5.1/flextable/man/merge_h.Rd | 6 flextable-0.5.1/flextable/man/merge_h_range.Rd |only flextable-0.5.1/flextable/man/merge_none.Rd | 6 flextable-0.5.1/flextable/man/merge_v.Rd | 6 flextable-0.5.1/flextable/man/minibar.Rd | 2 flextable-0.5.1/flextable/man/theme_alafoli.Rd |only flextable-0.5.1/flextable/man/theme_booktabs.Rd | 11 flextable-0.5.1/flextable/man/theme_box.Rd | 8 flextable-0.5.1/flextable/man/theme_tron.Rd | 8 flextable-0.5.1/flextable/man/theme_tron_legacy.Rd | 7 flextable-0.5.1/flextable/man/theme_vader.Rd |only flextable-0.5.1/flextable/man/theme_vanilla.Rd | 8 flextable-0.5.1/flextable/man/theme_zebra.Rd | 8 flextable-0.5.1/flextable/man/vline.Rd |only flextable-0.5.1/flextable/man/vline_left.Rd |only flextable-0.5.1/flextable/man/vline_right.Rd |only flextable-0.5.1/flextable/vignettes/format.Rmd | 150 ++++-- flextable-0.5.1/flextable/vignettes/layout.Rmd | 436 ++++++++++++++---- flextable-0.5.1/flextable/vignettes/overview.Rmd | 56 +- 68 files changed, 2239 insertions(+), 1430 deletions(-)
Title: Produce Descriptive and Comparative Tables Easily
Description: Easily create descriptive and comparative tables.
It makes use and integrates directly with the tidyverse family of packages, and pipes.
Tables are produced as data frames/lists of data frames for easy manipulation after creation,
and ready to be saved as csv, or piped to DT::datatable() or pander::pander() to integrate into reports.
Author: Maxime Wack [aut, cre]
Maintainer: Maxime Wack <maximewack@free.fr>
Diff between desctable versions 0.1.3 dated 2018-07-11 and 0.1.4 dated 2019-02-07
DESCRIPTION | 6 MD5 | 12 - NEWS | 11 + R/imports.R | 2 R/stats.R | 5 build/vignette.rds |binary inst/doc/desctable.html | 350 +++++++++++++++++++++++++++--------------------- 7 files changed, 223 insertions(+), 163 deletions(-)
Title: Weighted Dependence Measures
Description: Provides efficient implementations of weighted dependence measures
and related asymptotic tests for independence. Implemented measures are
the Pearson correlation, Spearman's rho, Kendall's tau, Blomqvist's beta, and
Hoeffding's D; see, e.g., Nelsen (2006) <doi:10.1007/0-387-28678-0> and
Hollander et al. (2015, ISBN:9780470387375).
Author: Thomas Nagler [aut, cre]
Maintainer: Thomas Nagler <mail@tnagler.com>
Diff between wdm versions 0.1.1 dated 2018-06-12 and 0.2.0 dated 2019-02-07
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- NEWS.md | 10 ++++++++++ R/indep_test.R | 18 +++++++++++------- R/wdm.R | 14 +++++++++----- build/partial.rdb |binary inst/include/wdm/prho.hpp | 7 +++---- man/indep_test.Rd | 20 +++++++++++++------- man/wdm.Rd | 16 +++++++++++----- 9 files changed, 69 insertions(+), 40 deletions(-)
Title: Training of Neural Networks
Description: Training of neural networks using backpropagation,
resilient backpropagation with (Riedmiller, 1994) or without
weight backtracking (Riedmiller and Braun, 1993) or the
modified globally convergent version by Anastasiadis et al.
(2005). The package allows flexible settings through
custom-choice of error and activation function. Furthermore,
the calculation of generalized weights (Intrator O & Intrator
N, 1993) is implemented.
Author: Stefan Fritsch [aut],
Frauke Guenther [aut],
Marvin N. Wright [aut, cre],
Marc Suling [ctb],
Sebastian M. Mueller [ctb]
Maintainer: Marvin N. Wright <wright@leibniz-bips.de>
Diff between neuralnet versions 1.33 dated 2016-08-16 and 1.44.2 dated 2019-02-07
DESCRIPTION | 31 - MD5 | 40 - NAMESPACE | 16 NEWS |only R/compute.r | 56 - R/confidence.interval.r | 708 +++++++++++++----------- R/convert_functions.R |only R/fit_neuralnet.R |only R/gwplot.r | 208 ++++--- R/neuralnet-package.R |only R/neuralnet.r | 1282 +++++++++++++-------------------------------- R/plot.nn.r | 480 +++++++++------- R/predict.R |only R/prediction.r | 233 ++++---- R/print.R |only man/compute.Rd | 60 -- man/confidence.interval.Rd | 100 +-- man/gwplot.Rd | 118 ++-- man/neuralnet-package.Rd | 187 +++--- man/neuralnet.Rd | 284 ++++++--- man/plot.nn.Rd | 142 +++- man/predict.nn.Rd |only man/prediction.Rd | 89 +-- tests |only 24 files changed, 1927 insertions(+), 2107 deletions(-)
Title: Simulation of Study Data
Description: Simulates data sets in order to explore modeling techniques or
better understand data generating processes. The user specifies a set of
relationships between covariates, and generates data based on these
specifications. The final data sets can represent data from randomized
control trials, repeated measure (longitudinal) designs, and cluster
randomized trials. Missingness can be generated using various
mechanisms (MCAR, MAR, NMAR).
Author: Keith Goldfeld [aut, cre]
Maintainer: Keith Goldfeld <Keith.Goldfeld@nyumc.org>
Diff between simstudy versions 0.1.10 dated 2018-09-16 and 0.1.11 dated 2019-02-07
DESCRIPTION | 14 MD5 | 47 +- NEWS.md | 16 R/addCondition.R | 21 R/addCorFlex.R | 16 R/addCorGen.R | 79 ++- R/catProbs.R | 8 R/defData.R | 7 R/genCorFlex.R | 16 R/genCorGen.R | 9 R/genFactor.R | 21 R/genMiss.R | 248 +++++----- R/genSpline.R | 2 R/int_addLags.R |only R/int_genNegBinom.R | 11 R/int_gengamma.R | 2 R/int_gennorm.R | 54 +- build/vignette.rds |binary inst/doc/simstudy.R | 863 -------------------------------------- inst/doc/simstudy.Rmd | 1106 ------------------------------------------------- inst/doc/simstudy.html | 896 +-------------------------------------- man/defData.Rd | 6 man/genCorFlex.Rd | 1 man/genSpline.Rd | 2 vignettes/simstudy.Rmd | 1106 ------------------------------------------------- 25 files changed, 378 insertions(+), 4173 deletions(-)
Title: Modeling, Imputing and Generating Synthetic Versions of Nested
Categorical Data in the Presence of Impossible Combinations
Description: This tool set provides a set of functions to fit the nested Dirichlet process mixture of products of multinomial distributions (NDPMPM) model for nested categorical household data in the presence of impossible combinations. It has direct applications in imputing missing values for and generating synthetic versions of nested household data.
Author: Quanli Wang, Olanrewaju Akande, Jingchen Hu, Jerry Reiter and Andres Barrientos
Maintainer: Olanrewaju Akande <akandelanre13@gmail.com>
Diff between NestedCategBayesImpute versions 1.1.0 dated 2017-12-01 and 1.2.1 dated 2019-02-07
NestedCategBayesImpute-1.1.0/NestedCategBayesImpute/R/ImpossibleHouseholds.R |only NestedCategBayesImpute-1.1.0/NestedCategBayesImpute/R/samplers.R |only NestedCategBayesImpute-1.1.0/NestedCategBayesImpute/man/samplehouseholds_HHhead_at_group_level.Rd |only NestedCategBayesImpute-1.1.0/NestedCategBayesImpute/src/checkSZ.cpp |only NestedCategBayesImpute-1.1.0/NestedCategBayesImpute/src/samplehouseholds_imp.cpp |only NestedCategBayesImpute-1.2.1/NestedCategBayesImpute/DESCRIPTION | 22 NestedCategBayesImpute-1.2.1/NestedCategBayesImpute/MD5 | 83 +- NestedCategBayesImpute-1.2.1/NestedCategBayesImpute/NAMESPACE | 1 NestedCategBayesImpute-1.2.1/NestedCategBayesImpute/R/NewFunctions.R |only NestedCategBayesImpute-1.2.1/NestedCategBayesImpute/R/RcppExports.R | 80 ++ NestedCategBayesImpute-1.2.1/NestedCategBayesImpute/R/RunModel.R | 153 +++- NestedCategBayesImpute-1.2.1/NestedCategBayesImpute/R/init.R | 144 ++-- NestedCategBayesImpute-1.2.1/NestedCategBayesImpute/demo/example.R | 147 +--- NestedCategBayesImpute-1.2.1/NestedCategBayesImpute/man/GetImpossibleHouseholds.Rd | 9 NestedCategBayesImpute-1.2.1/NestedCategBayesImpute/man/RunModel.Rd | 112 --- NestedCategBayesImpute-1.2.1/NestedCategBayesImpute/man/SampleMissing.Rd | 5 NestedCategBayesImpute-1.2.1/NestedCategBayesImpute/man/UpdateLambda.Rd | 14 NestedCategBayesImpute-1.2.1/NestedCategBayesImpute/man/UpdateLambdaWeighted.Rd | 15 NestedCategBayesImpute-1.2.1/NestedCategBayesImpute/man/UpdatePhi.Rd | 8 NestedCategBayesImpute-1.2.1/NestedCategBayesImpute/man/UpdatePhiWeighted.Rd | 9 NestedCategBayesImpute-1.2.1/NestedCategBayesImpute/man/checkSZ2.Rd |only NestedCategBayesImpute-1.2.1/NestedCategBayesImpute/man/checkconstraints_HHhead_at_group_level.Rd | 5 NestedCategBayesImpute-1.2.1/NestedCategBayesImpute/man/initData.Rd | 12 NestedCategBayesImpute-1.2.1/NestedCategBayesImpute/man/initMissing.Rd | 9 NestedCategBayesImpute-1.2.1/NestedCategBayesImpute/man/sampleG.Rd | 5 NestedCategBayesImpute-1.2.1/NestedCategBayesImpute/man/sampleM.Rd | 5 NestedCategBayesImpute-1.2.1/NestedCategBayesImpute/man/samplehouseholds.Rd | 9 NestedCategBayesImpute-1.2.1/NestedCategBayesImpute/src/Makevars |only NestedCategBayesImpute-1.2.1/NestedCategBayesImpute/src/RcppExports.cpp | 316 ++++++++-- NestedCategBayesImpute-1.2.1/NestedCategBayesImpute/src/SampleMatrix.cpp |only NestedCategBayesImpute-1.2.1/NestedCategBayesImpute/src/SampleMising.cpp |only NestedCategBayesImpute-1.2.1/NestedCategBayesImpute/src/SpecialFunctions.cpp |only NestedCategBayesImpute-1.2.1/NestedCategBayesImpute/src/SpecialFunctions.h |only NestedCategBayesImpute-1.2.1/NestedCategBayesImpute/src/checkconstraints.cpp | 151 +++- NestedCategBayesImpute-1.2.1/NestedCategBayesImpute/src/checkconstraints.h | 13 NestedCategBayesImpute-1.2.1/NestedCategBayesImpute/src/checkconstraints_imp.cpp | 129 ++-- NestedCategBayesImpute-1.2.1/NestedCategBayesImpute/src/generateData.cpp |only NestedCategBayesImpute-1.2.1/NestedCategBayesImpute/src/groupcount.cpp | 12 NestedCategBayesImpute-1.2.1/NestedCategBayesImpute/src/groupcount.h |only NestedCategBayesImpute-1.2.1/NestedCategBayesImpute/src/sampleG.cpp | 140 +++- NestedCategBayesImpute-1.2.1/NestedCategBayesImpute/src/sampleLambda.cpp |only NestedCategBayesImpute-1.2.1/NestedCategBayesImpute/src/sampleM.cpp | 95 ++- NestedCategBayesImpute-1.2.1/NestedCategBayesImpute/src/samplePhi.cpp |only NestedCategBayesImpute-1.2.1/NestedCategBayesImpute/src/sampleW.cpp | 50 + NestedCategBayesImpute-1.2.1/NestedCategBayesImpute/src/sampleW.h | 9 NestedCategBayesImpute-1.2.1/NestedCategBayesImpute/src/sample_households_imp.cpp |only NestedCategBayesImpute-1.2.1/NestedCategBayesImpute/src/samplealpha.cpp |only NestedCategBayesImpute-1.2.1/NestedCategBayesImpute/src/samplehhparallel.cpp |only NestedCategBayesImpute-1.2.1/NestedCategBayesImpute/src/samplehouseholds.cpp | 78 -- NestedCategBayesImpute-1.2.1/NestedCategBayesImpute/src/samplehouseholds.h | 37 - NestedCategBayesImpute-1.2.1/NestedCategBayesImpute/src/sampleomega.cpp |only NestedCategBayesImpute-1.2.1/NestedCategBayesImpute/src/samplepi.cpp |only NestedCategBayesImpute-1.2.1/NestedCategBayesImpute/src/utils.cpp |only NestedCategBayesImpute-1.2.1/NestedCategBayesImpute/src/utils.h |only 54 files changed, 1155 insertions(+), 722 deletions(-)
More information about NestedCategBayesImpute at CRAN
Permanent link
Title: Useful Tools for Jurimetrical Analysis Used by the Brazilian
Jurimetrics Association
Description: The Brazilian Jurimetrics Association (ABJ in
Portuguese, see <http://www.abjur.org.br/en/> for more information) is
a non-profit organization which aims to investigate and promote the
use of statistics and probability in the study of Law and its
institutions. This package implements general purpose tools used by
ABJ, such as functions for sampling and basic manipulation of
Brazilian lawsuits identification number. It also implements functions
for text cleaning, such as accentuation removal.
Author: Julio Trecenti [aut],
Athos Damiani [ctb],
Fernando Correa [aut],
Caio Lente [aut, cre],
Brazilian Jurimetrics Association [cph]
Maintainer: Caio Lente <caio.lente@usp.br>
Diff between abjutils versions 0.2.1 dated 2018-01-19 and 0.2.3 dated 2019-02-07
abjutils-0.2.1/abjutils/R/rm_accent_from_names.R |only abjutils-0.2.1/abjutils/man/carefully.Rd |only abjutils-0.2.1/abjutils/man/dvec.Rd |only abjutils-0.2.1/abjutils/man/rm_accent_from_names.Rd |only abjutils-0.2.3/abjutils/DESCRIPTION | 65 ++- abjutils-0.2.3/abjutils/MD5 | 50 +- abjutils-0.2.3/abjutils/NAMESPACE | 17 abjutils-0.2.3/abjutils/R/carf.R |only abjutils-0.2.3/abjutils/R/cnj.R | 80 +++- abjutils-0.2.3/abjutils/R/esaj.R |only abjutils-0.2.3/abjutils/R/escape_unicode.R | 20 - abjutils-0.2.3/abjutils/R/pvec.R |only abjutils-0.2.3/abjutils/R/sample_cnj.R | 103 ++--- abjutils-0.2.3/abjutils/R/tabela.R | 22 - abjutils-0.2.3/abjutils/R/table_utils.R | 40 +- abjutils-0.2.3/abjutils/R/test_fun.R |only abjutils-0.2.3/abjutils/R/utils.R | 285 ++++----------- abjutils-0.2.3/abjutils/README.md | 10 abjutils-0.2.3/abjutils/man/calc_dig.Rd | 2 abjutils-0.2.3/abjutils/man/carf_build_id.Rd |only abjutils-0.2.3/abjutils/man/carf_calc_dig.Rd |only abjutils-0.2.3/abjutils/man/carf_check_dig.Rd |only abjutils-0.2.3/abjutils/man/check_dig_vet.Rd |only abjutils-0.2.3/abjutils/man/chrome_to_body.Rd |only abjutils-0.2.3/abjutils/man/clean_cnj.Rd |only abjutils-0.2.3/abjutils/man/file_sans_ext.Rd |only abjutils-0.2.3/abjutils/man/gather_subjects.Rd |only abjutils-0.2.3/abjutils/man/pattern_cnj.Rd |only abjutils-0.2.3/abjutils/man/pvec.Rd |only abjutils-0.2.3/abjutils/man/reais.Rd |only abjutils-0.2.3/abjutils/man/sample_cnj.Rd | 39 +- abjutils-0.2.3/abjutils/man/test_fun.Rd |only abjutils-0.2.3/abjutils/man/verify_cnj.Rd |only abjutils-0.2.3/abjutils/man/write_data.Rd |only abjutils-0.2.3/abjutils/tests/testthat/test-check_dig.R | 2 abjutils-0.2.3/abjutils/tests/testthat/test-rm_accent.R | 49 +- abjutils-0.2.3/abjutils/tests/testthat/test-sample_cnj.R | 29 - 37 files changed, 429 insertions(+), 384 deletions(-)
Title: Constrained Inference for Linear Mixed Effects Models
Description: Estimation and inference for linear models where some or all of the
fixed-effects coefficients are subject to order restrictions. This package uses
the robust residual bootstrap methodology for inference, and can handle some
structure in the residual variance matrix.
Author: Casey M. Jelsema [aut, cre],
Shyamal D. Peddada [aut]
Maintainer: Casey M. Jelsema <jelsema.casey@gmail.com>
Diff between CLME versions 2.0-10 dated 2018-05-23 and 2.0-11 dated 2019-02-07
CLME-2.0-10/CLME/data/rat.blood.csv |only CLME-2.0-11/CLME/DESCRIPTION | 11 ++++--- CLME-2.0-11/CLME/MD5 | 42 +++++++++++++++--------------- CLME-2.0-11/CLME/NEWS | 8 +++++ CLME-2.0-11/CLME/R/create.constraints.r | 2 + CLME-2.0-11/CLME/R/summary_clme.r | 2 - CLME-2.0-11/CLME/R/utilities.r | 2 - CLME-2.0-11/CLME/data/rat.blood.csv.gz |only CLME-2.0-11/CLME/man/VarCorr.Rd | 4 -- CLME-2.0-11/CLME/man/as.clme.Rd | 2 - CLME-2.0-11/CLME/man/clme_em.Rd | 10 ++++--- CLME-2.0-11/CLME/man/fixef.clme.Rd | 19 ------------- CLME-2.0-11/CLME/man/logLik.clme.Rd | 2 - CLME-2.0-11/CLME/man/minque.Rd | 5 ++- CLME-2.0-11/CLME/man/model.matrix.clme.Rd | 2 - CLME-2.0-11/CLME/man/nobs.clme.Rd | 2 - CLME-2.0-11/CLME/man/plot.summary.clme.Rd | 4 +- CLME-2.0-11/CLME/man/ranef.clme.Rd | 7 ----- CLME-2.0-11/CLME/man/residuals.clme.Rd | 2 - CLME-2.0-11/CLME/man/summary.clme.Rd | 4 +- CLME-2.0-11/CLME/man/vcov.clme.Rd | 2 - CLME-2.0-11/CLME/man/w.stat.Rd | 2 - CLME-2.0-11/CLME/tests |only 23 files changed, 53 insertions(+), 81 deletions(-)
Title: Precise and Accurate Power of the Wilcoxon-Mann-Whitney Rank-Sum
Test for a Continuous Variable
Description: Power calculator for the two-sample Wilcoxon-Mann-Whitney rank-sum test for a continuous outcome (Mollan, Trumble, Reifeis et. al., Jan. 2019) <arXiv:1901.04597>, (Mann and Whitney 1947) <doi:10.1214/aoms/1177730491>, (Shieh, Jan, and Randles 2006) <doi:10.1080/10485250500473099>.
Author: Ilana Trumble, Orlando Ferrer, Camden Bay, Katie Mollan
Maintainer: Ilana Trumble <ilana.trumble@ucdenver.edu>
Diff between wmwpow versions 0.1.1 dated 2019-01-25 and 0.1.2 dated 2019-02-07
DESCRIPTION | 10 +++++----- MD5 | 10 +++++----- R/wmwpowd.R | 8 ++++---- R/wmwpowp.R | 8 ++++---- man/wmwpowd.Rd | 4 ++-- man/wmwpowp.Rd | 4 ++-- 6 files changed, 22 insertions(+), 22 deletions(-)
Title: Interface to the 'Daymet' Web Services
Description: Programmatic interface to the 'Daymet' web services
(<http://daymet.ornl.gov>). Allows for easy downloads of
'Daymet' climate data directly to your R workspace or your computer.
Routines for both single pixel data downloads and
gridded (netCDF) data are provided.
Author: Hufkens Koen [aut, cre]
Maintainer: Hufkens Koen <koen.hufkens@gmail.com>
Diff between daymetr versions 1.3.3 dated 2018-05-01 and 1.4 dated 2019-02-07
daymetr-1.3.3/daymetr/tests/run_tests.r |only daymetr-1.4/daymetr/DESCRIPTION | 17 daymetr-1.4/daymetr/MD5 | 70 - daymetr-1.4/daymetr/R/calc_nd.r | 24 daymetr-1.4/daymetr/R/daymet_grid_agg.r | 18 daymetr-1.4/daymetr/R/daymet_grid_offset.r | 16 daymetr-1.4/daymetr/R/daymet_grid_tmean.r | 43 daymetr-1.4/daymetr/R/daymetr.r | 2 daymetr-1.4/daymetr/R/download_daymet.r | 55 - daymetr-1.4/daymetr/R/download_daymet_batch.r | 51 daymetr-1.4/daymetr/R/download_daymet_ncss.r | 114 +- daymetr-1.4/daymetr/R/download_daymet_tiles.r | 56 - daymetr-1.4/daymetr/R/nc2tif.r | 59 - daymetr-1.4/daymetr/R/read_daymet.r | 137 +- daymetr-1.4/daymetr/R/zzz.r |only daymetr-1.4/daymetr/build/vignette.rds |binary daymetr-1.4/daymetr/inst/doc/daymetr-vignette.R | 80 - daymetr-1.4/daymetr/inst/doc/daymetr-vignette.Rmd | 73 - daymetr-1.4/daymetr/inst/doc/daymetr-vignette.html | 516 +++++++--- daymetr-1.4/daymetr/inst/extdata |only daymetr-1.4/daymetr/man/calc_nd.Rd | 8 daymetr-1.4/daymetr/man/daymet_grid_agg.Rd | 2 daymetr-1.4/daymetr/man/daymet_grid_offset.Rd | 7 daymetr-1.4/daymetr/man/daymet_grid_tmean.Rd | 19 daymetr-1.4/daymetr/man/daymetr.Rd | 2 daymetr-1.4/daymetr/man/download_daymet.Rd | 6 daymetr-1.4/daymetr/man/download_daymet_batch.Rd | 12 daymetr-1.4/daymetr/man/download_daymet_ncss.Rd | 9 daymetr-1.4/daymetr/man/download_daymet_tiles.Rd | 2 daymetr-1.4/daymetr/man/nc2tif.Rd | 4 daymetr-1.4/daymetr/man/read_daymet.Rd | 14 daymetr-1.4/daymetr/tests/testthat.r |only daymetr-1.4/daymetr/tests/testthat/test_ancillary_functions.r | 186 +-- daymetr-1.4/daymetr/tests/testthat/test_ncss_downloads.r | 44 daymetr-1.4/daymetr/tests/testthat/test_single_pixel_extractions.r | 58 - daymetr-1.4/daymetr/tests/testthat/test_tile_downloads.r | 147 +- daymetr-1.4/daymetr/vignettes/daymetr-vignette.Rmd | 73 - 37 files changed, 1085 insertions(+), 839 deletions(-)
Title: Construct Rich Tables for Output to 'HTML'/'Excel'
Description: Easily create tables from data
frames/matrices. Create/manipulate tables
row-by-row, column-by-column or cell-by-cell.
Use common formatting/styling to output
rich tables as 'HTML', 'HTML widgets' or to
'Excel'.
Author: Christopher Bailiss [aut, cre]
Maintainer: Christopher Bailiss <cbailiss@gmail.com>
Diff between basictabler versions 0.1.1 dated 2019-01-07 and 0.2.0 dated 2019-02-07
basictabler-0.1.1/basictabler/tests/testthat/testGeneral.R |only basictabler-0.2.0/basictabler/DESCRIPTION | 6 basictabler-0.2.0/basictabler/MD5 | 95 + basictabler-0.2.0/basictabler/NAMESPACE | 3 basictabler-0.2.0/basictabler/NEWS.md | 28 basictabler-0.2.0/basictabler/R/BasicTable.R | 306 +++++ basictabler-0.2.0/basictabler/R/TableCell.R | 45 basictabler-0.2.0/basictabler/R/TableCellRanges.R |only basictabler-0.2.0/basictabler/R/TableCells.R | 117 +- basictabler-0.2.0/basictabler/R/TableHtmlRenderer.R | 20 basictabler-0.2.0/basictabler/R/TableOpenXlsxRenderer.R | 25 basictabler-0.2.0/basictabler/R/TableStyle.R | 16 basictabler-0.2.0/basictabler/R/TableThemes.R | 28 basictabler-0.2.0/basictabler/R/checkArgument.R | 9 basictabler-0.2.0/basictabler/R/quickTable.R | 54 - basictabler-0.2.0/basictabler/R/sample.R |only basictabler-0.2.0/basictabler/README.md | 112 +- basictabler-0.2.0/basictabler/inst/doc/v01-introduction.Rmd | 11 basictabler-0.2.0/basictabler/inst/doc/v01-introduction.html | 43 basictabler-0.2.0/basictabler/inst/doc/v02-workingwithcells.R | 23 basictabler-0.2.0/basictabler/inst/doc/v02-workingwithcells.Rmd | 79 + basictabler-0.2.0/basictabler/inst/doc/v02-workingwithcells.html | 133 +- basictabler-0.2.0/basictabler/inst/doc/v03-outputs.html | 8 basictabler-0.2.0/basictabler/inst/doc/v04-styling.R | 361 +++++-- basictabler-0.2.0/basictabler/inst/doc/v04-styling.Rmd | 471 +++++++-- basictabler-0.2.0/basictabler/inst/doc/v04-styling.html | 512 +++++++--- basictabler-0.2.0/basictabler/inst/doc/v05-findingandformatting.R | 52 - basictabler-0.2.0/basictabler/inst/doc/v05-findingandformatting.Rmd | 60 - basictabler-0.2.0/basictabler/inst/doc/v05-findingandformatting.html | 115 -- basictabler-0.2.0/basictabler/inst/doc/v06-shiny.html | 4 basictabler-0.2.0/basictabler/inst/doc/v07-excelexport.R | 13 basictabler-0.2.0/basictabler/inst/doc/v07-excelexport.Rmd | 15 basictabler-0.2.0/basictabler/inst/doc/v07-excelexport.html | 19 basictabler-0.2.0/basictabler/man/BasicTable.Rd | 33 basictabler-0.2.0/basictabler/man/TableCell.Rd | 6 basictabler-0.2.0/basictabler/man/TableCellRanges.Rd |only basictabler-0.2.0/basictabler/man/TableCells.Rd | 34 basictabler-0.2.0/basictabler/man/basictablerSample.Rd |only basictabler-0.2.0/basictabler/man/getBlankTblTheme.Rd |only basictabler-0.2.0/basictabler/man/qhtbl.Rd | 25 basictabler-0.2.0/basictabler/man/qtbl.Rd | 22 basictabler-0.2.0/basictabler/tests/testthat/test01_basicTests.R |only basictabler-0.2.0/basictabler/tests/testthat/test02_quickTableTests.R |only basictabler-0.2.0/basictabler/tests/testthat/test03_dataFrameTests.R |only basictabler-0.2.0/basictabler/tests/testthat/test04_matrixTests.R |only basictabler-0.2.0/basictabler/tests/testthat/test05_constructionTests.R |only basictabler-0.2.0/basictabler/tests/testthat/test06_themingTests.R |only basictabler-0.2.0/basictabler/tests/testthat/test07_exportTests.R |only basictabler-0.2.0/basictabler/tests/testthat/test08_getCellsTests.R |only basictabler-0.2.0/basictabler/tests/testthat/test09_findCellsTest.R |only basictabler-0.2.0/basictabler/tests/testthat/test10_getValuesTests.R |only basictabler-0.2.0/basictabler/tests/testthat/test11_mergedCellsTests.R |only basictabler-0.2.0/basictabler/vignettes/v01-introduction.Rmd | 11 basictabler-0.2.0/basictabler/vignettes/v02-workingwithcells.Rmd | 79 + basictabler-0.2.0/basictabler/vignettes/v04-styling.Rmd | 471 +++++++-- basictabler-0.2.0/basictabler/vignettes/v05-findingandformatting.Rmd | 60 - basictabler-0.2.0/basictabler/vignettes/v07-excelexport.Rmd | 15 57 files changed, 2659 insertions(+), 880 deletions(-)
Title: A Package for Reconstructing Animal Paths from Solar Geolocation
Loggers
Description: Spatio-temporal locations of an animal are computed
from annotated data with a hidden Markov model via particle
filter algorithm. The package is relatively robust to varying
degrees of shading.
The hidden Markov model is described in Movement Ecology (Rakhimberdiev et al., 2015)<doi:10.1186/s40462-015-0062-5>,
general package description is in the Methods in Ecology and Evolution (Rakhimberdiev et al., 2017)<doi:10.1111/2041-210X.12765>
and package accuracy assessed in the Journal of Avian Biology (Rakhimberdiev et al. 2016)<doi:10.1111/jav.00891>.
Author: Eldar Rakhimberdiev [aut, cre],
Anatoly Saveliev [aut],
Julia Karagicheva [aut],
Simeon Lisovski [ctb]
Maintainer: Eldar Rakhimberdiev <eldar@nioz.nl>
Diff between FLightR versions 0.4.7 dated 2018-10-11 and 0.4.8 dated 2019-02-07
DESCRIPTION | 10 MD5 | 22 R/data_import.R | 19 R/data_preparation.R | 9 R/new_plotting_functions.R | 4 build/vignette.rds |binary inst/doc/FLightR_with_black-tailed_godwit_vignette_from_MEE_2017.html | 698 ++++------ man/make.calibration.Rd | 6 man/plot_util_distr.Rd | 7 man/run.particle.filter.Rd | 7 tests/testthat.R | 1 tests/testthat/test_data_result_summary_and_plotting.R | 16 12 files changed, 406 insertions(+), 393 deletions(-)
Title: A Simple HTTP Server to Serve Static Files or Dynamic Documents
Description: Start an HTTP server in R to serve static files, or dynamic
documents that can be converted to HTML files (e.g., R Markdown) under a
given directory.
Author: Yihui Xie [aut, cre] (<https://orcid.org/0000-0003-0645-5666>),
Carson Sievert [ctb],
Jesse Anderson [ctb],
Ramnath Vaidyanathan [ctb]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between servr versions 0.11 dated 2018-10-23 and 0.12 dated 2019-02-07
DESCRIPTION | 9 ++++---- MD5 | 11 +++++----- NAMESPACE | 1 NEWS | 11 ++++++++++ R/utils.R | 55 ++++++++++++++++++++++++++++++----------------------- man/daemon_stop.Rd | 12 +++++------ man/random_port.Rd |only 7 files changed, 61 insertions(+), 38 deletions(-)
Title: Create Colour Palettes Based on Famous Artworks from the
Rijksmuseum
Description: Create colour palettes based on famous paintings. Using the
function rijksPalette(), you can search for any painting in the collection
of the Dutch Rijksmuseum and generate a colour palette from it. This package
was developed using the fantastic Rijksmuseum API
<https://www.rijksmuseum.nl/api>.
Author: Erik-Jan van Kesteren [aut, cre]
Maintainer: Erik-Jan van Kesteren <e.vankesteren1@uu.nl>
Diff between rijkspalette versions 1.0.0 dated 2018-05-07 and 1.0.1 dated 2019-02-07
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/helpers.R | 10 ++++++++-- R/rijkspalette.R | 3 +++ man/rijksPalette.Rd | 2 ++ 5 files changed, 21 insertions(+), 10 deletions(-)
More information about OutlierDetection at CRAN
Permanent link
Title: Statistical Tools for Topological Data Analysis
Description: Tools for the statistical analysis of persistent homology and for
density clustering. For that, this package provides an R interface for the
efficient algorithms of the C++ libraries 'GUDHI' <http://gudhi.gforge.inria.fr/>, 'Dionysus' <http://www.mrzv.org/software/dionysus/>, and 'PHAT' <https://bitbucket.org/phat-code/phat/>. This package also implements the methods in Fasy et al. (2014) <doi:10.1214/14-AOS1252> and Chazal et al. (2014) <doi:10.1145/2582112.2582128> for analyzing the statistical significance of persistent homology features.
Author: Brittany T. Fasy, Jisu Kim, Fabrizio Lecci, Clement Maria,
David L. Millman, Vincent Rouvreau. The included GUDHI is authored by
Clement Maria, Dionysus by Dmitriy Morozov, and
PHAT by Ulrich Bauer, Michael Kerber, and Jan Reininghaus.
Maintainer: Jisu Kim <jisu.kim@inria.fr>
Diff between TDA versions 1.6.4 dated 2018-08-06 and 1.6.5 dated 2019-02-07
TDA-1.6.4/TDA/README.md |only TDA-1.6.4/TDA/src/CGAL/Alpha_shape_euclidean_traits_3.h |only TDA-1.6.4/TDA/src/CGAL/Cartesian/MatrixC33.h |only TDA-1.6.4/TDA/src/CGAL/Cartesian_d.h |only TDA-1.6.4/TDA/src/CGAL/Circulator_identity.h |only TDA-1.6.4/TDA/src/CGAL/Circulator_on_node.h |only TDA-1.6.4/TDA/src/CGAL/Circulator_project.h |only TDA-1.6.4/TDA/src/CGAL/Concatenate_iterator.h |only TDA-1.6.4/TDA/src/CGAL/ConicCPA2.h |only TDA-1.6.4/TDA/src/CGAL/ConicHPA2.h |only TDA-1.6.4/TDA/src/CGAL/Conic_misc.h |only TDA-1.6.4/TDA/src/CGAL/Counting_iterator.h |only TDA-1.6.4/TDA/src/CGAL/Delaunay_triangulation_cell_base_with_circumcenter_3.h |only TDA-1.6.4/TDA/src/CGAL/Exact_predicates_exact_constructions_kernel_with_sqrt.h |only TDA-1.6.4/TDA/src/CGAL/Fixed_alpha_shape_3.h |only TDA-1.6.4/TDA/src/CGAL/Fixed_alpha_shape_cell_base_3.h |only TDA-1.6.4/TDA/src/CGAL/Fixed_alpha_shape_vertex_base_3.h |only TDA-1.6.4/TDA/src/CGAL/Flattening_iterator.h |only TDA-1.6.4/TDA/src/CGAL/Fourtuple.h |only 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TDA-1.6.5/TDA/src/CGAL/Alpha_shape_cell_base_3.h | 47 TDA-1.6.5/TDA/src/CGAL/Alpha_shape_vertex_base_3.h | 36 TDA-1.6.5/TDA/src/CGAL/Arithmetic_kernel/Arithmetic_kernel_base.h | 1 TDA-1.6.5/TDA/src/CGAL/Bbox_2.h | 17 TDA-1.6.5/TDA/src/CGAL/Bbox_3.h | 22 TDA-1.6.5/TDA/src/CGAL/CC_safe_handle.h | 5 TDA-1.6.5/TDA/src/CGAL/Cache.h | 1 TDA-1.6.5/TDA/src/CGAL/Cartesian/Aff_transformation_2.h | 1 TDA-1.6.5/TDA/src/CGAL/Cartesian/Aff_transformation_3.h | 1 TDA-1.6.5/TDA/src/CGAL/Cartesian/Aff_transformation_rep_2.h | 7 TDA-1.6.5/TDA/src/CGAL/Cartesian/Aff_transformation_rep_3.h | 9 TDA-1.6.5/TDA/src/CGAL/Cartesian/Cartesian_base.h | 7 TDA-1.6.5/TDA/src/CGAL/Cartesian/Circle_2.h | 1 TDA-1.6.5/TDA/src/CGAL/Cartesian/Circle_3.h | 10 TDA-1.6.5/TDA/src/CGAL/Cartesian/ConicCPA2.h |only TDA-1.6.5/TDA/src/CGAL/Cartesian/Data_accessor_2.h | 1 TDA-1.6.5/TDA/src/CGAL/Cartesian/Direction_2.h | 1 TDA-1.6.5/TDA/src/CGAL/Cartesian/Direction_3.h | 1 TDA-1.6.5/TDA/src/CGAL/Cartesian/Iso_cuboid_3.h | 1 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TDA-1.6.5/TDA/src/CGAL/NewKernel_d/Filtered_predicate2.h | 5 TDA-1.6.5/TDA/src/CGAL/NewKernel_d/KernelD_converter.h | 3 TDA-1.6.5/TDA/src/CGAL/NewKernel_d/Kernel_d_interface.h | 63 TDA-1.6.5/TDA/src/CGAL/NewKernel_d/Kernel_object_converter.h | 13 TDA-1.6.5/TDA/src/CGAL/NewKernel_d/LA_eigen/LA.h | 8 TDA-1.6.5/TDA/src/CGAL/NewKernel_d/LA_eigen/constructors.h | 1 TDA-1.6.5/TDA/src/CGAL/NewKernel_d/Types/Aff_transformation.h | 1 TDA-1.6.5/TDA/src/CGAL/NewKernel_d/Types/Hyperplane.h | 5 TDA-1.6.5/TDA/src/CGAL/NewKernel_d/Types/Iso_box.h | 1 TDA-1.6.5/TDA/src/CGAL/NewKernel_d/Types/Line.h | 1 TDA-1.6.5/TDA/src/CGAL/NewKernel_d/Types/Ray.h | 1 TDA-1.6.5/TDA/src/CGAL/NewKernel_d/Types/Segment.h | 1 TDA-1.6.5/TDA/src/CGAL/NewKernel_d/Types/Sphere.h | 8 TDA-1.6.5/TDA/src/CGAL/NewKernel_d/Types/Weighted_point.h |only TDA-1.6.5/TDA/src/CGAL/NewKernel_d/Vector/array.h | 1 TDA-1.6.5/TDA/src/CGAL/NewKernel_d/Vector/determinant_of_iterator_to_points_from_iterator_to_vectors.h | 1 TDA-1.6.5/TDA/src/CGAL/NewKernel_d/Vector/determinant_of_iterator_to_points_from_points.h | 1 TDA-1.6.5/TDA/src/CGAL/NewKernel_d/Vector/determinant_of_iterator_to_vectors_from_vectors.h | 1 TDA-1.6.5/TDA/src/CGAL/NewKernel_d/Vector/determinant_of_points_from_vectors.h | 1 TDA-1.6.5/TDA/src/CGAL/NewKernel_d/Vector/determinant_of_vectors_small_dim.h | 1 TDA-1.6.5/TDA/src/CGAL/NewKernel_d/Vector/determinant_of_vectors_small_dim_internal.h | 1 TDA-1.6.5/TDA/src/CGAL/NewKernel_d/Vector/mix.h | 1 TDA-1.6.5/TDA/src/CGAL/NewKernel_d/Vector/vector.h | 1 TDA-1.6.5/TDA/src/CGAL/NewKernel_d/Wrapper/Cartesian_wrap.h | 3 TDA-1.6.5/TDA/src/CGAL/NewKernel_d/Wrapper/Hyperplane_d.h | 1 TDA-1.6.5/TDA/src/CGAL/NewKernel_d/Wrapper/Point_d.h | 1 TDA-1.6.5/TDA/src/CGAL/NewKernel_d/Wrapper/Ref_count_obj.h | 1 TDA-1.6.5/TDA/src/CGAL/NewKernel_d/Wrapper/Segment_d.h | 1 TDA-1.6.5/TDA/src/CGAL/NewKernel_d/Wrapper/Sphere_d.h | 1 TDA-1.6.5/TDA/src/CGAL/NewKernel_d/Wrapper/Vector_d.h | 1 TDA-1.6.5/TDA/src/CGAL/NewKernel_d/Wrapper/Weighted_point_d.h |only TDA-1.6.5/TDA/src/CGAL/NewKernel_d/function_objects_cartesian.h | 95 TDA-1.6.5/TDA/src/CGAL/NewKernel_d/functor_properties.h | 1 TDA-1.6.5/TDA/src/CGAL/NewKernel_d/functor_tags.h | 11 TDA-1.6.5/TDA/src/CGAL/NewKernel_d/store_kernel.h | 1 TDA-1.6.5/TDA/src/CGAL/NewKernel_d/utils.h | 1 TDA-1.6.5/TDA/src/CGAL/Object.h | 4 TDA-1.6.5/TDA/src/CGAL/Origin.h | 3 TDA-1.6.5/TDA/src/CGAL/Origin_impl.h | 1 TDA-1.6.5/TDA/src/CGAL/Plane_3.h | 6 TDA-1.6.5/TDA/src/CGAL/Point_2.h | 34 TDA-1.6.5/TDA/src/CGAL/Point_2_Iso_rectangle_2_intersection.h | 1 TDA-1.6.5/TDA/src/CGAL/Point_2_Line_2_intersection.h | 1 TDA-1.6.5/TDA/src/CGAL/Point_2_Point_2_intersection.h | 1 TDA-1.6.5/TDA/src/CGAL/Point_2_Ray_2_intersection.h | 1 TDA-1.6.5/TDA/src/CGAL/Point_2_Segment_2_intersection.h | 1 TDA-1.6.5/TDA/src/CGAL/Point_2_Triangle_2_intersection.h | 1 TDA-1.6.5/TDA/src/CGAL/Point_3.h | 32 TDA-1.6.5/TDA/src/CGAL/Polygon_2/Polygon_2_algorithms_impl.h | 133 TDA-1.6.5/TDA/src/CGAL/Polygon_2/Polygon_2_simplicity.h | 17 TDA-1.6.5/TDA/src/CGAL/Polygon_2/polygon_assertions.h | 1 TDA-1.6.5/TDA/src/CGAL/Polygon_2_algorithms.h | 7 TDA-1.6.5/TDA/src/CGAL/Profile_counter.h | 58 TDA-1.6.5/TDA/src/CGAL/Quotient.h | 27 TDA-1.6.5/TDA/src/CGAL/Quotient_fwd.h | 1 TDA-1.6.5/TDA/src/CGAL/Random.h | 41 TDA-1.6.5/TDA/src/CGAL/Random_impl.h | 19 TDA-1.6.5/TDA/src/CGAL/Rational_traits.h | 1 TDA-1.6.5/TDA/src/CGAL/Ray_2.h | 4 TDA-1.6.5/TDA/src/CGAL/Ray_2_Iso_rectangle_2_intersection.h | 5 TDA-1.6.5/TDA/src/CGAL/Ray_2_Line_2_intersection.h | 1 TDA-1.6.5/TDA/src/CGAL/Ray_2_Ray_2_intersection.h | 1 TDA-1.6.5/TDA/src/CGAL/Ray_2_Segment_2_intersection.h | 1 TDA-1.6.5/TDA/src/CGAL/Ray_2_Triangle_2_intersection.h | 1 TDA-1.6.5/TDA/src/CGAL/Ray_3.h | 3 TDA-1.6.5/TDA/src/CGAL/Real_embeddable_traits.h | 19 TDA-1.6.5/TDA/src/CGAL/Residue.h | 1 TDA-1.6.5/TDA/src/CGAL/Scalar_factor_traits.h | 1 TDA-1.6.5/TDA/src/CGAL/Segment_2.h | 3 TDA-1.6.5/TDA/src/CGAL/Segment_2_Iso_rectangle_2_intersection.h | 5 TDA-1.6.5/TDA/src/CGAL/Segment_2_Line_2_intersection.h | 1 TDA-1.6.5/TDA/src/CGAL/Segment_2_Segment_2_intersection.h | 41 TDA-1.6.5/TDA/src/CGAL/Segment_2_Triangle_2_intersection.h | 1 TDA-1.6.5/TDA/src/CGAL/Segment_3.h | 3 TDA-1.6.5/TDA/src/CGAL/Simple_cartesian.h | 1 TDA-1.6.5/TDA/src/CGAL/Simple_homogeneous.h | 1 TDA-1.6.5/TDA/src/CGAL/Spatial_lock_grid_3.h | 29 TDA-1.6.5/TDA/src/CGAL/Spatial_sort_traits_adapter_3.h | 9 TDA-1.6.5/TDA/src/CGAL/Spatial_sort_traits_adapter_d.h | 8 TDA-1.6.5/TDA/src/CGAL/Sphere_3.h | 9 TDA-1.6.5/TDA/src/CGAL/Sqrt_extension.h | 1 TDA-1.6.5/TDA/src/CGAL/Sqrt_extension/Algebraic_extension_traits.h | 1 TDA-1.6.5/TDA/src/CGAL/Sqrt_extension/Algebraic_structure_traits.h | 11 TDA-1.6.5/TDA/src/CGAL/Sqrt_extension/Chinese_remainder_traits.h | 1 TDA-1.6.5/TDA/src/CGAL/Sqrt_extension/Coercion_traits.h | 1 TDA-1.6.5/TDA/src/CGAL/Sqrt_extension/Eigen_NumTraits.h | 5 TDA-1.6.5/TDA/src/CGAL/Sqrt_extension/Fraction_traits.h | 1 TDA-1.6.5/TDA/src/CGAL/Sqrt_extension/Get_arithmetic_kernel.h | 1 TDA-1.6.5/TDA/src/CGAL/Sqrt_extension/Modular_traits.h | 1 TDA-1.6.5/TDA/src/CGAL/Sqrt_extension/Real_embeddable_traits.h | 9 TDA-1.6.5/TDA/src/CGAL/Sqrt_extension/Scalar_factor_traits.h | 1 TDA-1.6.5/TDA/src/CGAL/Sqrt_extension/Sqrt_extension_type.h | 20 TDA-1.6.5/TDA/src/CGAL/Sqrt_extension/Wang_traits.h | 1 TDA-1.6.5/TDA/src/CGAL/Sqrt_extension/convert_to_bfi.h | 22 TDA-1.6.5/TDA/src/CGAL/Sqrt_extension/io.h | 7 TDA-1.6.5/TDA/src/CGAL/Sqrt_extension_fwd.h | 1 TDA-1.6.5/TDA/src/CGAL/Straight_2.h | 1 TDA-1.6.5/TDA/src/CGAL/TDS_full_cell_default_storage_policy.h | 16 TDA-1.6.5/TDA/src/CGAL/TDS_full_cell_mirror_storage_policy.h | 4 TDA-1.6.5/TDA/src/CGAL/Tetrahedron_3.h | 1 TDA-1.6.5/TDA/src/CGAL/Time_stamper.h | 56 TDA-1.6.5/TDA/src/CGAL/Tools/chained_map.h | 37 TDA-1.6.5/TDA/src/CGAL/Triangle_2.h | 3 TDA-1.6.5/TDA/src/CGAL/Triangle_2_Iso_rectangle_2_intersection.h | 1 TDA-1.6.5/TDA/src/CGAL/Triangle_2_Line_2_intersection.h | 1 TDA-1.6.5/TDA/src/CGAL/Triangle_2_Ray_2_intersection.h | 1 TDA-1.6.5/TDA/src/CGAL/Triangle_2_Segment_2_intersection.h | 1 TDA-1.6.5/TDA/src/CGAL/Triangle_2_Triangle_2_do_intersect.h | 1 TDA-1.6.5/TDA/src/CGAL/Triangle_2_Triangle_2_intersection.h | 1 TDA-1.6.5/TDA/src/CGAL/Triangle_3.h | 1 TDA-1.6.5/TDA/src/CGAL/Triangle_3_Line_3_do_intersect.h | 1 TDA-1.6.5/TDA/src/CGAL/Triangle_3_Plane_3_do_intersect.h | 1 TDA-1.6.5/TDA/src/CGAL/Triangle_3_Point_3_do_intersect.h | 1 TDA-1.6.5/TDA/src/CGAL/Triangle_3_Ray_3_do_intersect.h | 1 TDA-1.6.5/TDA/src/CGAL/Triangle_3_Segment_3_do_intersect.h | 1 TDA-1.6.5/TDA/src/CGAL/Triangle_3_Tetrahedron_3_do_intersect.h | 1 TDA-1.6.5/TDA/src/CGAL/Triangle_3_Triangle_3_do_intersect.h | 1 TDA-1.6.5/TDA/src/CGAL/Triangle_3_Triangle_3_intersection.h | 1 TDA-1.6.5/TDA/src/CGAL/Triangulation.h | 214 TDA-1.6.5/TDA/src/CGAL/Triangulation_3.h | 5710 +++++----- TDA-1.6.5/TDA/src/CGAL/Triangulation_cell_base_3.h | 41 TDA-1.6.5/TDA/src/CGAL/Triangulation_data_structure.h | 104 TDA-1.6.5/TDA/src/CGAL/Triangulation_data_structure_3.h | 118 TDA-1.6.5/TDA/src/CGAL/Triangulation_ds_cell_base_3.h | 31 TDA-1.6.5/TDA/src/CGAL/Triangulation_ds_full_cell.h | 7 TDA-1.6.5/TDA/src/CGAL/Triangulation_ds_vertex.h | 8 TDA-1.6.5/TDA/src/CGAL/Triangulation_ds_vertex_base_3.h | 4 TDA-1.6.5/TDA/src/CGAL/Triangulation_face.h | 7 TDA-1.6.5/TDA/src/CGAL/Triangulation_full_cell.h | 23 TDA-1.6.5/TDA/src/CGAL/Triangulation_hierarchy_3.h | 121 TDA-1.6.5/TDA/src/CGAL/Triangulation_hierarchy_vertex_base_3.h | 4 TDA-1.6.5/TDA/src/CGAL/Triangulation_simplex_3.h | 4 TDA-1.6.5/TDA/src/CGAL/Triangulation_structural_filtering_traits.h | 1 TDA-1.6.5/TDA/src/CGAL/Triangulation_utils_3.h | 30 TDA-1.6.5/TDA/src/CGAL/Triangulation_vertex.h | 8 TDA-1.6.5/TDA/src/CGAL/Triangulation_vertex_base_3.h | 4 TDA-1.6.5/TDA/src/CGAL/Uncertain.h | 1 TDA-1.6.5/TDA/src/CGAL/Unique_hash_map.h | 58 TDA-1.6.5/TDA/src/CGAL/Vector_2.h | 44 TDA-1.6.5/TDA/src/CGAL/Vector_3.h | 46 TDA-1.6.5/TDA/src/CGAL/Weighted_point_2.h |only TDA-1.6.5/TDA/src/CGAL/Weighted_point_3.h |only TDA-1.6.5/TDA/src/CGAL/aff_transformation_tags.h | 3 TDA-1.6.5/TDA/src/CGAL/aff_transformation_tags_impl.h | 1 TDA-1.6.5/TDA/src/CGAL/algorithm.h | 26 TDA-1.6.5/TDA/src/CGAL/argument_swaps.h | 1 TDA-1.6.5/TDA/src/CGAL/array.h | 60 TDA-1.6.5/TDA/src/CGAL/assertions.h | 58 TDA-1.6.5/TDA/src/CGAL/assertions_behaviour.h | 7 TDA-1.6.5/TDA/src/CGAL/assertions_impl.h | 5 TDA-1.6.5/TDA/src/CGAL/auto_link/CGAL.h | 1 TDA-1.6.5/TDA/src/CGAL/auto_link/auto_link.h | 6 TDA-1.6.5/TDA/src/CGAL/basic.h | 1 TDA-1.6.5/TDA/src/CGAL/basic_classes.h | 1 TDA-1.6.5/TDA/src/CGAL/bbox_intersection_3.h | 2 TDA-1.6.5/TDA/src/CGAL/boost/iterator/counting_iterator.hpp | 83 TDA-1.6.5/TDA/src/CGAL/boost/iterator/transform_iterator.hpp | 83 TDA-1.6.5/TDA/src/CGAL/circulator.h | 3 TDA-1.6.5/TDA/src/CGAL/circulator_bases.h | 1 TDA-1.6.5/TDA/src/CGAL/config.h | 222 TDA-1.6.5/TDA/src/CGAL/constant.h | 4 TDA-1.6.5/TDA/src/CGAL/constructions/kernel_ftC2.h | 102 TDA-1.6.5/TDA/src/CGAL/constructions/kernel_ftC3.h | 502 TDA-1.6.5/TDA/src/CGAL/convert_to_bfi.h | 1 TDA-1.6.5/TDA/src/CGAL/determinant.h | 1 TDA-1.6.5/TDA/src/CGAL/determinant_of_vectors.h | 1 TDA-1.6.5/TDA/src/CGAL/disable_warnings.h |only TDA-1.6.5/TDA/src/CGAL/double.h | 22 TDA-1.6.5/TDA/src/CGAL/enable_warnings.h |only TDA-1.6.5/TDA/src/CGAL/enum.h | 15 TDA-1.6.5/TDA/src/CGAL/exceptions.h | 13 TDA-1.6.5/TDA/src/CGAL/export/CGAL.h | 3 TDA-1.6.5/TDA/src/CGAL/export/helpers.h | 3 TDA-1.6.5/TDA/src/CGAL/extended_euclidean_algorithm.h | 1 TDA-1.6.5/TDA/src/CGAL/float.h | 16 TDA-1.6.5/TDA/src/CGAL/function_objects.h | 21 TDA-1.6.5/TDA/src/CGAL/functional.h |only TDA-1.6.5/TDA/src/CGAL/gmp.h | 7 TDA-1.6.5/TDA/src/CGAL/hilbert_sort.h | 33 TDA-1.6.5/TDA/src/CGAL/int.h | 31 TDA-1.6.5/TDA/src/CGAL/internal/Combination_enumerator.h | 7 TDA-1.6.5/TDA/src/CGAL/internal/Delaunay_triangulation_hierarchy_3.h | 18 TDA-1.6.5/TDA/src/CGAL/internal/Dummy_tds_3.h | 4 TDA-1.6.5/TDA/src/CGAL/internal/Exact_type_selector.h | 7 TDA-1.6.5/TDA/src/CGAL/internal/Has_member_visited.h |only TDA-1.6.5/TDA/src/CGAL/internal/Has_nested_type_Bare_point.h |only TDA-1.6.5/TDA/src/CGAL/internal/Intersections_3/Bbox_3_Bbox_3_do_intersect.h | 1 TDA-1.6.5/TDA/src/CGAL/internal/Intersections_3/Bbox_3_Line_3_do_intersect.h | 1 TDA-1.6.5/TDA/src/CGAL/internal/Intersections_3/Bbox_3_Plane_3_do_intersect.h | 1 TDA-1.6.5/TDA/src/CGAL/internal/Intersections_3/Bbox_3_Ray_3_do_intersect.h | 1 TDA-1.6.5/TDA/src/CGAL/internal/Intersections_3/Bbox_3_Segment_3_do_intersect.h | 5 TDA-1.6.5/TDA/src/CGAL/internal/Intersections_3/Bbox_3_Sphere_3_do_intersect.h | 1 TDA-1.6.5/TDA/src/CGAL/internal/Intersections_3/Bbox_3_Triangle_3_do_intersect.h | 14 TDA-1.6.5/TDA/src/CGAL/internal/Intersections_3/Triangle_3_Line_3_intersection.h | 20 TDA-1.6.5/TDA/src/CGAL/internal/Intersections_3/Triangle_3_Ray_3_intersection.h | 32 TDA-1.6.5/TDA/src/CGAL/internal/Intersections_3/Triangle_3_Segment_3_intersection.h | 18 TDA-1.6.5/TDA/src/CGAL/internal/Lazy_alpha_nt_3.h | 253 TDA-1.6.5/TDA/src/CGAL/internal/Static_filters/Angle_3.h | 7 TDA-1.6.5/TDA/src/CGAL/internal/Static_filters/Collinear_3.h |only TDA-1.6.5/TDA/src/CGAL/internal/Static_filters/Compare_squared_radius_3.h | 25 TDA-1.6.5/TDA/src/CGAL/internal/Static_filters/Compare_weighted_squared_radius_3.h | 9 TDA-1.6.5/TDA/src/CGAL/internal/Static_filters/Compare_x_2.h |only TDA-1.6.5/TDA/src/CGAL/internal/Static_filters/Compare_y_2.h |only TDA-1.6.5/TDA/src/CGAL/internal/Static_filters/Compare_y_at_x_2.h | 1 TDA-1.6.5/TDA/src/CGAL/internal/Static_filters/Do_intersect_2.h |only TDA-1.6.5/TDA/src/CGAL/internal/Static_filters/Do_intersect_3.h | 120 TDA-1.6.5/TDA/src/CGAL/internal/Static_filters/Equal_2.h |only TDA-1.6.5/TDA/src/CGAL/internal/Static_filters/Equal_3.h | 1 TDA-1.6.5/TDA/src/CGAL/internal/Static_filters/Is_degenerate_3.h | 22 TDA-1.6.5/TDA/src/CGAL/internal/Static_filters/Orientation_2.h | 8 TDA-1.6.5/TDA/src/CGAL/internal/Static_filters/Orientation_3.h | 21 TDA-1.6.5/TDA/src/CGAL/internal/Static_filters/Power_side_of_oriented_power_sphere_3.h |only TDA-1.6.5/TDA/src/CGAL/internal/Static_filters/Side_of_oriented_circle_2.h | 12 TDA-1.6.5/TDA/src/CGAL/internal/Static_filters/Side_of_oriented_sphere_3.h | 25 TDA-1.6.5/TDA/src/CGAL/internal/Static_filters/Static_filter_error.h | 3 TDA-1.6.5/TDA/src/CGAL/internal/Static_filters/Static_filters.h | 120 TDA-1.6.5/TDA/src/CGAL/internal/Static_filters/tools.h | 82 TDA-1.6.5/TDA/src/CGAL/internal/Static_or_dynamic_array.h | 4 TDA-1.6.5/TDA/src/CGAL/internal/Triangulation/Dummy_TDS.h | 4 TDA-1.6.5/TDA/src/CGAL/internal/Triangulation/Triangulation_ds_iterators.h | 6 TDA-1.6.5/TDA/src/CGAL/internal/Triangulation/utilities.h | 10 TDA-1.6.5/TDA/src/CGAL/internal/Triangulation_ds_circulators_3.h | 4 TDA-1.6.5/TDA/src/CGAL/internal/Triangulation_ds_iterators_3.h | 4 TDA-1.6.5/TDA/src/CGAL/internal/boost |only TDA-1.6.5/TDA/src/CGAL/internal/enable_third_party_libraries.h |only TDA-1.6.5/TDA/src/CGAL/internal/info_check.h | 10 TDA-1.6.5/TDA/src/CGAL/intersection_2.h | 1 TDA-1.6.5/TDA/src/CGAL/intersection_2_1.h | 1 TDA-1.6.5/TDA/src/CGAL/intersection_2_2.h | 1 TDA-1.6.5/TDA/src/CGAL/intersection_2_3.h | 1 TDA-1.6.5/TDA/src/CGAL/intersection_3.h | 4 TDA-1.6.5/TDA/src/CGAL/intersection_3_1.h | 1 TDA-1.6.5/TDA/src/CGAL/intersections.h | 1 TDA-1.6.5/TDA/src/CGAL/ipower.h | 5 TDA-1.6.5/TDA/src/CGAL/is_convertible.h | 1 TDA-1.6.5/TDA/src/CGAL/is_iterator.h | 1 TDA-1.6.5/TDA/src/CGAL/iterator.h | 196 TDA-1.6.5/TDA/src/CGAL/iterator_from_indices.h | 1 TDA-1.6.5/TDA/src/CGAL/kernel_assertions.h | 1 TDA-1.6.5/TDA/src/CGAL/kernel_basic.h | 1 TDA-1.6.5/TDA/src/CGAL/kernel_config.h | 1 TDA-1.6.5/TDA/src/CGAL/license |only TDA-1.6.5/TDA/src/CGAL/license.h |only TDA-1.6.5/TDA/src/CGAL/long_double.h | 13 TDA-1.6.5/TDA/src/CGAL/long_long.h | 11 TDA-1.6.5/TDA/src/CGAL/memory.h | 1 TDA-1.6.5/TDA/src/CGAL/min_max_n.h | 1 TDA-1.6.5/TDA/src/CGAL/number_type_basic.h | 1 TDA-1.6.5/TDA/src/CGAL/number_type_config.h | 1 TDA-1.6.5/TDA/src/CGAL/number_utils.h | 22 TDA-1.6.5/TDA/src/CGAL/number_utils_classes.h | 3 TDA-1.6.5/TDA/src/CGAL/predicates/kernel_ftC2.h | 86 TDA-1.6.5/TDA/src/CGAL/predicates/kernel_ftC3.h | 238 TDA-1.6.5/TDA/src/CGAL/predicates/sign_of_determinant.h | 2 TDA-1.6.5/TDA/src/CGAL/predicates_on_points_2.h | 1 TDA-1.6.5/TDA/src/CGAL/property_map.h |only TDA-1.6.5/TDA/src/CGAL/rational_rotation.h | 1 TDA-1.6.5/TDA/src/CGAL/representation_tags.h | 1 TDA-1.6.5/TDA/src/CGAL/result_of.h | 17 TDA-1.6.5/TDA/src/CGAL/spatial_sort.h | 33 TDA-1.6.5/TDA/src/CGAL/squared_distance_2.h | 1 TDA-1.6.5/TDA/src/CGAL/squared_distance_2_1.h | 1 TDA-1.6.5/TDA/src/CGAL/squared_distance_2_2.h | 1 TDA-1.6.5/TDA/src/CGAL/squared_distance_3.h | 1 TDA-1.6.5/TDA/src/CGAL/squared_distance_3_0.h | 33 TDA-1.6.5/TDA/src/CGAL/squared_distance_3_1.h | 98 TDA-1.6.5/TDA/src/CGAL/squared_distance_3_2.h | 103 TDA-1.6.5/TDA/src/CGAL/squared_distance_utils.h | 1 TDA-1.6.5/TDA/src/CGAL/sse2.h | 5 TDA-1.6.5/TDA/src/CGAL/tags.h | 1 TDA-1.6.5/TDA/src/CGAL/test_FPU_rounding_mode_impl.h | 18 TDA-1.6.5/TDA/src/CGAL/transforming_iterator.h | 23 TDA-1.6.5/TDA/src/CGAL/transforming_pair_iterator.h | 1 TDA-1.6.5/TDA/src/CGAL/triangulation_assertions.h | 14 TDA-1.6.5/TDA/src/CGAL/tss.h | 51 TDA-1.6.5/TDA/src/CGAL/tuple.h | 3 TDA-1.6.5/TDA/src/CGAL/type_traits.h | 16 TDA-1.6.5/TDA/src/CGAL/typeset.h | 1 TDA-1.6.5/TDA/src/CGAL/use.h | 1 TDA-1.6.5/TDA/src/CGAL/user_classes.h | 3 TDA-1.6.5/TDA/src/CGAL/utility.h | 13 TDA-1.6.5/TDA/src/CGAL/utils.h | 1 TDA-1.6.5/TDA/src/CGAL/utils_classes.h | 26 TDA-1.6.5/TDA/src/CGAL/value_type_traits.h |only TDA-1.6.5/TDA/src/CGAL/version.h | 9 TDA-1.6.5/TDA/src/CGAL/wmult.h | 1 TDA-1.6.5/TDA/src/RcppExports.cpp | 64 TDA-1.6.5/TDA/src/boost/container |only TDA-1.6.5/TDA/src/boost/serialization/binary_object.hpp | 158 TDA-1.6.5/TDA/src/geometry/distances.hpp | 60 TDA-1.6.5/TDA/src/geometry/euclidean.hpp | 282 TDA-1.6.5/TDA/src/geometry/linalg.hpp | 76 TDA-1.6.5/TDA/src/geometry/polynomial.hpp | 152 TDA-1.6.5/TDA/src/geometry/simulator.hpp | 278 TDA-1.6.5/TDA/src/gudhi/Simplex_tree/Simplex_tree_node_explicit_storage.h | 15 TDA-1.6.5/TDA/src/tdautils/cgalUtils.h | 5 TDA-1.6.5/TDA/src/tdautils/ripsL2.h | 4 TDA-1.6.5/TDA/src/topology/chain.hpp | 364 TDA-1.6.5/TDA/src/topology/conesimplex.hpp | 48 TDA-1.6.5/TDA/src/topology/dynamic-persistence.hpp | 692 - TDA-1.6.5/TDA/src/topology/filtration.hpp | 12 TDA-1.6.5/TDA/src/topology/image-zigzag-persistence.hpp | 426 TDA-1.6.5/TDA/src/topology/lsvineyard.hpp | 724 - TDA-1.6.5/TDA/src/topology/persistence-diagram.hpp | 652 - TDA-1.6.5/TDA/src/topology/rips.hpp | 466 TDA-1.6.5/TDA/src/topology/simplex.hpp | 256 TDA-1.6.5/TDA/src/topology/static-persistence.hpp | 316 TDA-1.6.5/TDA/src/utilities/consistencylist.hpp | 172 TDA-1.6.5/TDA/src/utilities/munkres/matrix.hpp | 462 TDA-1.6.5/TDA/vignettes/article.Rnw | 6 759 files changed, 16588 insertions(+), 9638 deletions(-)
Title: Ocean Biogeographic Information System (OBIS) Client
Description: Client for the Ocean Biogeographic Information System (<https://obis.org>).
Author: Pieter Provoost [cre, aut],
Samuel Bosch [aut],
Ward Appeltans [ctb],
OBIS [cph]
Maintainer: Pieter Provoost <pieterprovoost@gmail.com>
Diff between robis versions 1.0.1 dated 2018-07-02 and 2.0.0 dated 2019-02-07
robis-1.0.1/robis/R/area.R |only robis-1.0.1/robis/R/dataset.R |only robis-1.0.1/robis/R/group.R |only robis-1.0.1/robis/R/node.R |only robis-1.0.1/robis/R/plot.R |only robis-1.0.1/robis/R/qc.R |only robis-1.0.1/robis/R/taxon.R |only robis-1.0.1/robis/man/area.Rd |only robis-1.0.1/robis/man/dataset.Rd |only robis-1.0.1/robis/man/dataset_by_id.Rd |only robis-1.0.1/robis/man/group.Rd |only robis-1.0.1/robis/man/leafletmap.Rd |only robis-1.0.1/robis/man/node.Rd |only robis-1.0.1/robis/man/qc.Rd |only robis-1.0.1/robis/man/qcflags.Rd |only robis-1.0.1/robis/man/taxon.Rd |only robis-1.0.1/robis/man/taxon_common.Rd |only robis-1.0.1/robis/tests/testthat/test_area.R |only robis-1.0.1/robis/tests/testthat/test_dataset.R |only robis-1.0.1/robis/tests/testthat/test_group.R |only robis-1.0.1/robis/tests/testthat/test_node.R |only robis-1.0.1/robis/tests/testthat/test_plot.R |only robis-1.0.1/robis/tests/testthat/test_qc.R |only robis-1.0.1/robis/tests/testthat/test_taxon.R |only robis-2.0.0/robis/DESCRIPTION | 26 +-- robis-2.0.0/robis/LICENSE | 2 robis-2.0.0/robis/MD5 | 53 +----- robis-2.0.0/robis/NAMESPACE | 11 - robis-2.0.0/robis/NEWS.md | 8 robis-2.0.0/robis/R/checklist.R | 155 +++++++------------ robis-2.0.0/robis/R/map.R |only robis-2.0.0/robis/R/occurrence.R | 170 +++++++-------------- robis-2.0.0/robis/R/robis.R | 2 robis-2.0.0/robis/R/util.R | 106 +++---------- robis-2.0.0/robis/README.md | 38 +--- robis-2.0.0/robis/man/checklist.Rd | 56 ++---- robis-2.0.0/robis/man/map_ggplot.Rd |only robis-2.0.0/robis/man/map_leaflet.Rd |only robis-2.0.0/robis/man/occurrence.Rd | 58 +------ robis-2.0.0/robis/tests/testthat/test_checklist.R | 75 +-------- robis-2.0.0/robis/tests/testthat/test_occurrence.R | 170 +++------------------ 41 files changed, 264 insertions(+), 666 deletions(-)
Title: Cubature over Polygonal Domains
Description: Numerical integration of continuously differentiable
functions f(x,y) over simple closed polygonal domains.
The following cubature methods are implemented:
product Gauss cubature (Sommariva and Vianello, 2007,
<doi:10.1007/s10543-007-0131-2>),
the simple two-dimensional midpoint rule
(wrapping 'spatstat' functions),
adaptive cubature for radially symmetric functions via line
integrate() along the polygon boundary (Meyer and Held, 2014,
<doi:10.1214/14-AOAS743>, Supplement B),
and integration of the bivariate Gaussian density based on
polygon triangulation.
For simple integration along the axes, the 'cubature' package
is more appropriate.
Author: Sebastian Meyer [aut, cre, trl]
(<https://orcid.org/0000-0002-1791-9449>),
Leonhard Held [ths],
Michael Hoehle [ths]
Maintainer: Sebastian Meyer <seb.meyer@fau.de>
Diff between polyCub versions 0.7.0 dated 2018-10-11 and 0.7.1 dated 2019-02-07
DESCRIPTION | 21 +- MD5 | 44 +++-- NEWS.md | 11 + R/plotpolyf.R | 10 - R/polyCub.R | 26 +-- R/polyCub.SV.R | 3 R/polyCub.exact.Gauss.R | 3 R/polyCub.midpoint.R | 3 R/zzz.R | 29 +-- README.md | 348 +++++++-------------------------------------- build |only inst/CITATION | 30 +-- inst/doc |only man/figures |only man/plot_polyregion.Rd | 10 - man/plotpolyf.Rd | 10 - man/polyCub-package.Rd | 27 +-- man/polyCub.Rd | 127 +--------------- man/polyCub.SV.Rd | 64 +++++++- man/polyCub.exact.Gauss.Rd | 18 ++ man/polyCub.iso.Rd | 10 - man/polyCub.midpoint.Rd | 35 ++++ src/init.c | 14 + vignettes |only 24 files changed, 323 insertions(+), 520 deletions(-)
Title: Collect and Retrieve Annotation Data for Various Genomic Data
Using Different Webservices
Description: Cross-species identification of novel gene candidates using the NCBI web service is provided. Further, sets of miRNA target genes can be identified by using the targetscan.org API.
Author: Daniel Fischer [aut, cre],
Anu Sironen [aut]
Maintainer: Daniel Fischer <daniel.fischer@luke.fi>
Diff between hoardeR versions 0.9.2 dated 2016-10-31 and 0.9.4 dated 2019-02-07
hoardeR-0.9.2/hoardeR/R/exportBed.R |only hoardeR-0.9.2/hoardeR/R/exportFA.R |only hoardeR-0.9.2/hoardeR/R/importBed.R |only hoardeR-0.9.2/hoardeR/R/importBlastTab.R |only hoardeR-0.9.2/hoardeR/R/importFA.R |only hoardeR-0.9.2/hoardeR/R/importXML.R |only hoardeR-0.9.2/hoardeR/man/exportBed.Rd |only hoardeR-0.9.2/hoardeR/man/exportFA.Rd |only hoardeR-0.9.2/hoardeR/man/importBed.Rd |only hoardeR-0.9.2/hoardeR/man/importBlastTab.Rd |only hoardeR-0.9.2/hoardeR/man/importFA.Rd |only hoardeR-0.9.2/hoardeR/man/importXML.Rd |only hoardeR-0.9.2/hoardeR/vignettes/coverageExample.png |only hoardeR-0.9.4/hoardeR/DESCRIPTION | 24 +++++--- hoardeR-0.9.4/hoardeR/MD5 | 53 ++++++++----------- hoardeR-0.9.4/hoardeR/NAMESPACE | 19 ++---- hoardeR-0.9.4/hoardeR/R/blastSeq.R | 7 +- hoardeR-0.9.4/hoardeR/R/coverageDensity.R |only hoardeR-0.9.4/hoardeR/R/getBlastResult.R | 2 hoardeR-0.9.4/hoardeR/R/getSequenceFromNCBI.R |only hoardeR-0.9.4/hoardeR/R/plotCoverage.R |only hoardeR-0.9.4/hoardeR/R/print.fa.R | 3 + hoardeR-0.9.4/hoardeR/R/print.fq.R |only hoardeR-0.9.4/hoardeR/R/sendFA.R | 41 ++++++++------ hoardeR-0.9.4/hoardeR/R/subPhased_uglyFix.R |only hoardeR-0.9.4/hoardeR/R/summary.fa.R | 2 hoardeR-0.9.4/hoardeR/R/summary.fq.R |only hoardeR-0.9.4/hoardeR/build/vignette.rds |binary hoardeR-0.9.4/hoardeR/inst/ChangeLog | 6 ++ hoardeR-0.9.4/hoardeR/inst/doc/hoardeR-vignette.R | 9 --- hoardeR-0.9.4/hoardeR/inst/doc/hoardeR-vignette.Rmd | 13 +--- hoardeR-0.9.4/hoardeR/inst/doc/hoardeR-vignette.pdf |binary hoardeR-0.9.4/hoardeR/man/blastSeq.Rd | 2 hoardeR-0.9.4/hoardeR/man/coverageDensity.Rd |only hoardeR-0.9.4/hoardeR/man/getSequenceFromNCBI.Rd |only hoardeR-0.9.4/hoardeR/man/hoardeR-package.Rd | 4 - hoardeR-0.9.4/hoardeR/man/plotCoverage.Rd |only hoardeR-0.9.4/hoardeR/vignettes/coverageExample.jpg |only hoardeR-0.9.4/hoardeR/vignettes/hoardeR-vignette.Rmd | 13 +--- 39 files changed, 100 insertions(+), 98 deletions(-)
Title: Breeding Program Simulations
Description: The successor to the 'AlphaSim' software for breeding program
simulation [Faux et al. (2016) <doi:10.3835/plantgenome2016.02.0013>].
Used for stochastic simulations of breeding programs to the level of DNA
sequence for every individual. Contained is a wide range of functions for
modeling common tasks in a breeding program, such as selection and crossing.
These functions allow for constructing simulations of highly complex plant and
animal breeding programs via scripting in the R software environment. Such
simulations can be used to evaluate overall breeding program performance and
conduct research into breeding program design, such as implementation of
genomic selection. Included is the 'Markovian Coalescent Simulator' ('MaCS')
for fast simulation of biallelic sequences according to a population
demographic history [Chen et al. (2009) <doi:10.1101/gr.083634.108>].
Author: Chris Gaynor [aut, cre] (<https://orcid.org/0000-0003-0558-6656>),
Gregor Gorjanc [ctb] (<https://orcid.org/0000-0001-8008-2787>),
David Wilson [ctb],
Daniel Money [ctb] (<https://orcid.org/0000-0001-5151-3648>),
John Hickey [ctb] (<https://orcid.org/0000-0001-5675-3974>)
Maintainer: Chris Gaynor <gaynor.robert@hotmail.com>
Diff between AlphaSimR versions 0.8.2 dated 2018-10-15 and 0.9.0 dated 2019-02-07
AlphaSimR-0.8.2/AlphaSimR/man/AlphaSimR-package.Rd |only AlphaSimR-0.8.2/AlphaSimR/src/getGv.h |only AlphaSimR-0.9.0/AlphaSimR/DESCRIPTION | 17 AlphaSimR-0.9.0/AlphaSimR/MD5 | 92 - AlphaSimR-0.9.0/AlphaSimR/NAMESPACE | 1 AlphaSimR-0.9.0/AlphaSimR/NEWS | 11 AlphaSimR-0.9.0/AlphaSimR/R/AlphaSimR.R | 21 AlphaSimR-0.9.0/AlphaSimR/R/Class-LociMap.R | 4 AlphaSimR-0.9.0/AlphaSimR/R/Class-Pop.R | 4 AlphaSimR-0.9.0/AlphaSimR/R/Class-SimParam.R | 118 +- AlphaSimR-0.9.0/AlphaSimR/R/GS.R | 141 ++ AlphaSimR-0.9.0/AlphaSimR/R/RcppExports.R | 84 - AlphaSimR-0.9.0/AlphaSimR/R/crossing.R | 93 + AlphaSimR-0.9.0/AlphaSimR/R/founderPop.R | 82 - AlphaSimR-0.9.0/AlphaSimR/R/hybrids.R | 71 - AlphaSimR-0.9.0/AlphaSimR/R/popSummary.R | 14 AlphaSimR-0.9.0/AlphaSimR/inst/doc/intro.html | 6 AlphaSimR-0.9.0/AlphaSimR/man/AlphaSimR.Rd |only AlphaSimR-0.9.0/AlphaSimR/man/GCAsol-class.Rd | 4 AlphaSimR-0.9.0/AlphaSimR/man/MapPop-class.Rd | 2 AlphaSimR-0.9.0/AlphaSimR/man/RRBLUP2.Rd | 2 AlphaSimR-0.9.0/AlphaSimR/man/RRBLUP_GCA2.Rd |only AlphaSimR-0.9.0/AlphaSimR/man/SimParam.Rd | 10 AlphaSimR-0.9.0/AlphaSimR/man/SimParam_switchFemaleMap.Rd | 4 AlphaSimR-0.9.0/AlphaSimR/man/SimParam_switchGenMap.Rd | 4 AlphaSimR-0.9.0/AlphaSimR/man/SimParam_switchMaleMap.Rd | 4 AlphaSimR-0.9.0/AlphaSimR/man/genParam.Rd | 4 AlphaSimR-0.9.0/AlphaSimR/man/hybridCross.Rd | 7 AlphaSimR-0.9.0/AlphaSimR/man/newMapPop.Rd | 4 AlphaSimR-0.9.0/AlphaSimR/man/quickHaplo.Rd | 5 AlphaSimR-0.9.0/AlphaSimR/man/randCross2.Rd | 2 AlphaSimR-0.9.0/AlphaSimR/man/runMacs.Rd | 6 AlphaSimR-0.9.0/AlphaSimR/man/runMacs2.Rd | 4 AlphaSimR-0.9.0/AlphaSimR/man/sampleHaplo.Rd | 6 AlphaSimR-0.9.0/AlphaSimR/man/setPhenoGCA.Rd | 9 AlphaSimR-0.9.0/AlphaSimR/man/trackHaploPop.Rd | 4 AlphaSimR-0.9.0/AlphaSimR/src/GEBV.cpp | 1 AlphaSimR-0.9.0/AlphaSimR/src/MME.cpp | 219 ++- AlphaSimR-0.9.0/AlphaSimR/src/RcppExports.cpp | 337 +++--- AlphaSimR-0.9.0/AlphaSimR/src/alphasimr.h | 1 AlphaSimR-0.9.0/AlphaSimR/src/getGv.cpp | 297 +++-- AlphaSimR-0.9.0/AlphaSimR/src/getHybridGv.cpp | 111 +- AlphaSimR-0.9.0/AlphaSimR/src/init.c | 14 AlphaSimR-0.9.0/AlphaSimR/src/meiosis.cpp | 767 +++++++++++--- AlphaSimR-0.9.0/AlphaSimR/src/misc.cpp | 6 AlphaSimR-0.9.0/AlphaSimR/src/misc.h | 1 AlphaSimR-0.9.0/AlphaSimR/src/optimize.cpp | 2 AlphaSimR-0.9.0/AlphaSimR/src/tuneTraits.cpp | 76 - AlphaSimR-0.9.0/AlphaSimR/tests/testthat/test-addTrait.R | 12 49 files changed, 1838 insertions(+), 846 deletions(-)
Title: Estimation and Validation Methods for Subgroup Identification
and Personalized Medicine
Description: Provides functions for fitting and validation of models for subgroup
identification and personalized medicine / precision medicine under the general subgroup
identification framework of Chen et al. (2017) <doi:10.1111/biom.12676>.
This package is intended for use for both randomized controlled trials and
observational studies.
Author: Jared Huling [aut, cre] (<https://orcid.org/0000-0003-0670-4845>),
Aaron Potvien [ctb],
Alexandros Karatzoglou [cph],
Alex Smola [cph]
Maintainer: Jared Huling <jaredhuling@gmail.com>
Diff between personalized versions 0.2.2 dated 2018-11-14 and 0.2.3 dated 2019-02-07
DESCRIPTION | 6 MD5 | 18 R/fit_subgroup.R | 2 R/plot_subgroup_fitted.R | 22 R/plot_subgroup_validated.R | 30 + R/validate_subgroup.R | 1 build/vignette.rds |binary inst/doc/usage_of_the_personalized_package.html | 70 +- tests/testthat/test-fitsubgroup.R | 607 ++++++++++++------------ tests/testthat/test-validatesubgroup.R | 8 10 files changed, 426 insertions(+), 338 deletions(-)
Title: Fuzzy Linear Regression
Description: Estimators for fuzzy linear regression. The functions estimate parameters of
fuzzy linear regression models with crisp or fuzzy independent variables (triangular
fuzzy numbers are supported). Implements multiple methods for parameter estimation and
algebraic operations with triangular fuzzy numbers. Includes functions for
summarising, printing and plotting the model fit. Calculates predictions from the
model and total error of fit.
Diamond (1988) <doi:10.1016/0020-0255(88)90047-3>,
Hung & Yang (2006) <doi:10.1016/j.fss.2006.08.004>,
Lee & Tanaka (1999) <doi:10.15807/jorsj.42.98>,
Nasrabadi, Nasrabadi & Nasrabady (2005) <doi:10.1016/j.amc.2004.02.008>,
Tanaka, Hayashi & Watada (1989) <doi:10.1016/0377-2217(89)90431-1>,
Zeng, Feng & Li (2017) <doi:10.1016/j.asoc.2016.09.029>.
Author: Pavel Skrabanek [aut, cph],
Natalia Martinkova [aut, cre, cph]
Maintainer: Natalia Martinkova <martinkova@ivb.cz>
Diff between fuzzyreg versions 0.4.1 dated 2018-12-05 and 0.5 dated 2019-02-07
fuzzyreg-0.4.1/fuzzyreg/man/diamond.Rd |only fuzzyreg-0.4.1/fuzzyreg/man/hung.Rd |only fuzzyreg-0.4.1/fuzzyreg/man/lee.Rd |only fuzzyreg-0.4.1/fuzzyreg/man/nasrabadi.Rd |only fuzzyreg-0.4.1/fuzzyreg/man/tanaka.Rd |only fuzzyreg-0.4.1/fuzzyreg/tests/testthat/test_fuzzylm.R |only fuzzyreg-0.5/fuzzyreg/DESCRIPTION | 11 fuzzyreg-0.5/fuzzyreg/MD5 | 93 +- fuzzyreg-0.5/fuzzyreg/NAMESPACE | 49 - fuzzyreg-0.5/fuzzyreg/NEWS | 12 fuzzyreg-0.5/fuzzyreg/R/GOF.R |only fuzzyreg-0.5/fuzzyreg/R/TEF.r | 13 fuzzyreg-0.5/fuzzyreg/R/coef.fuzzylm.R |only fuzzyreg-0.5/fuzzyreg/R/data.R | 8 fuzzyreg-0.5/fuzzyreg/R/flar.R |only fuzzyreg-0.5/fuzzyreg/R/fls.R | 6 fuzzyreg-0.5/fuzzyreg/R/fuzzify.R |only fuzzyreg-0.5/fuzzyreg/R/fuzzylm.R | 6 fuzzyreg-0.5/fuzzyreg/R/moflr.R | 6 fuzzyreg-0.5/fuzzyreg/R/oplr.R | 8 fuzzyreg-0.5/fuzzyreg/R/plr.R | 6 fuzzyreg-0.5/fuzzyreg/R/plrls.R | 7 fuzzyreg-0.5/fuzzyreg/R/predict.fuzzylm.R | 9 fuzzyreg-0.5/fuzzyreg/R/print.summary.fuzzylm.R | 6 fuzzyreg-0.5/fuzzyreg/R/summary.fuzzylm.R | 7 fuzzyreg-0.5/fuzzyreg/build/vignette.rds |binary fuzzyreg-0.5/fuzzyreg/inst/CITATION | 11 fuzzyreg-0.5/fuzzyreg/inst/doc/GettingStarted.R | 426 ++++++------ fuzzyreg-0.5/fuzzyreg/inst/doc/GettingStarted.Rnw | 9 fuzzyreg-0.5/fuzzyreg/inst/doc/GettingStarted.pdf |binary fuzzyreg-0.5/fuzzyreg/man/GOF.Rd |only fuzzyreg-0.5/fuzzyreg/man/TEF.Rd | 89 +- fuzzyreg-0.5/fuzzyreg/man/bats.Rd | 80 +- fuzzyreg-0.5/fuzzyreg/man/coef.fuzzylm.Rd |only fuzzyreg-0.5/fuzzyreg/man/dom.Rd | 52 - fuzzyreg-0.5/fuzzyreg/man/flar.Rd |only fuzzyreg-0.5/fuzzyreg/man/fls.Rd | 94 +- fuzzyreg-0.5/fuzzyreg/man/fuzzify.Rd |only fuzzyreg-0.5/fuzzyreg/man/fuzzydat.Rd | 78 +- fuzzyreg-0.5/fuzzyreg/man/fuzzylm.Rd | 159 ++-- fuzzyreg-0.5/fuzzyreg/man/moflr.Rd | 118 +-- fuzzyreg-0.5/fuzzyreg/man/oplr.Rd | 106 +- fuzzyreg-0.5/fuzzyreg/man/plot.fuzzylm.Rd | 104 +- fuzzyreg-0.5/fuzzyreg/man/plr.Rd | 100 +- fuzzyreg-0.5/fuzzyreg/man/plrls.Rd | 118 +-- fuzzyreg-0.5/fuzzyreg/man/predict.fuzzylm.Rd | 60 - fuzzyreg-0.5/fuzzyreg/man/print.fuzzylm.Rd | 48 - fuzzyreg-0.5/fuzzyreg/man/print.summary.fuzzylm.Rd | 50 - fuzzyreg-0.5/fuzzyreg/man/prodFuzzy.Rd | 54 - fuzzyreg-0.5/fuzzyreg/man/prodSfuzzy.Rd | 62 - fuzzyreg-0.5/fuzzyreg/man/sumFuzzy.Rd | 54 - fuzzyreg-0.5/fuzzyreg/man/summary.fuzzylm.Rd | 57 - fuzzyreg-0.5/fuzzyreg/tests/testthat/test_correctSolution.R | 38 + fuzzyreg-0.5/fuzzyreg/tests/testthat/test_performance.R |only fuzzyreg-0.5/fuzzyreg/vignettes/GettingStarted.Rnw | 9 55 files changed, 1143 insertions(+), 1080 deletions(-)
Title: Produce Charts that you See on the Fingertips Website
Description: Use Fingertips charts to recreate the visualisations
that are displayed on the Fingertips website (<http://fingertips.phe.org.uk/>).
Author: Sebastian Fox [aut, cre]
Maintainer: Sebastian Fox <sebastian.fox@phe.gov.uk>
Diff between fingertipscharts versions 0.0.3 dated 2018-12-13 and 0.0.4 dated 2019-02-07
DESCRIPTION | 12 MD5 | 87 +- NEWS.md | 8 R/quick_charts.R | 35 R/spine_chart_utils.R | 3 build/vignette.rds |binary inst/doc/quick_charts.R | 9 inst/doc/quick_charts.Rmd | 9 inst/doc/quick_charts.html | 57 - man/area_profiles.Rd | 5 man/map.Rd | 12 tests/figs/area-profiles-example/area-profiles-example.svg | 168 ++-- tests/figs/area-profiles/domains-included-area-profiles.svg | 258 +++--- tests/figs/area-profiles/full-area-all-dividers-profiles.svg | 196 ++-- tests/figs/area-profiles/full-area-profiles.svg | 196 ++-- tests/figs/area-profiles/full-with-factor-area-profiles.svg | 176 ++-- tests/figs/area-profiles/no-dt-area-profiles.svg | 96 +- tests/figs/box-plots-example/box-plot-example.svg | 297 +++---- tests/figs/box-plots/box-plots.svg | 150 +-- tests/figs/compare-areas/asc-compare-areas.svg | 202 ++-- tests/figs/compare-areas/desc-compare-areas.svg | 202 ++-- tests/figs/compare-areas/desc-no-fill-compare-areas.svg | 174 ++-- tests/figs/compare-areas/no-top-areas-asc-compare-areas.svg | 202 ++-- tests/figs/compare-areas/no-top-areas-desc-compare-areas.svg | 202 ++-- tests/figs/compare-indicators-example/compare-indicators-example.svg | 340 ++++---- tests/figs/compare-indicators/compare-indicators-high-r2.svg | 266 +++--- tests/figs/compare-indicators/compare-indicators-highlight.svg | 264 +++--- tests/figs/compare-indicators/compare-indicators-no-highlight.svg | 264 +++--- tests/figs/deps.txt | 9 tests/figs/map-example/map-example.svg | 382 ++++----- tests/figs/map/map-region-comparison.svg |only tests/figs/map/map.svg | 382 ++++----- tests/figs/overview/overview-no-top-areas.svg | 406 +++++----- tests/figs/overview/overview-top-areas.svg | 406 +++++----- tests/figs/population-example/population-example.svg | 234 ++--- tests/figs/population/full-pop-pyramid.svg | 226 ++--- tests/figs/population/no-comparator-pop-pyramid.svg | 206 ++--- tests/figs/population/one-comparator-pop-pyramid.svg | 214 ++--- tests/figs/trends-example/trends-example.svg | 186 ++-- tests/figs/trends/with-fill-trends.svg | 184 ++-- tests/figs/trends/without-fill-trends.svg | 184 ++-- tests/testthat/test-area-profiles.R | 70 + tests/testthat/test-examples.R | 290 +++---- tests/testthat/test-map.R | 71 + vignettes/quick_charts.Rmd | 9 45 files changed, 3773 insertions(+), 3576 deletions(-)
More information about fingertipscharts at CRAN
Permanent link
Title: Distance Metrics for Trees Generated by Congreve and Lamsdell
Description: Includes the 100 datasets simulated by Congreve and Lamsdell (2016)
<doi:10.1111/pala.12236>, and analyses of the partition and quartet distance of
reconstructed trees from the generative tree, as analysed by Smith (2019)
<doi:10.1098/rsbl.2018.0632>.
Author: Martin R. Smith [aut, cre, cph]
(<https://orcid.org/0000-0001-5660-1727>),
Curtis R. Congreve [cph, dtc],
James C. Lamsdell [cph, dtc]
Maintainer: Martin R. Smith <martin.smith@durham.ac.uk>
Diff between CongreveLamsdell2016 versions 1.0.0 dated 2019-02-05 and 1.0.1 dated 2019-02-07
CongreveLamsdell2016-1.0.0/CongreveLamsdell2016/data/clColours.rda |only CongreveLamsdell2016-1.0.0/CongreveLamsdell2016/data/clReferenceTree.rda |only CongreveLamsdell2016-1.0.1/CongreveLamsdell2016/DESCRIPTION | 11 +--- CongreveLamsdell2016-1.0.1/CongreveLamsdell2016/MD5 | 26 +++++----- CongreveLamsdell2016-1.0.1/CongreveLamsdell2016/NEWS.md | 4 + CongreveLamsdell2016-1.0.1/CongreveLamsdell2016/R/plots.R | 8 +-- CongreveLamsdell2016-1.0.1/CongreveLamsdell2016/README.md | 21 ++++++-- CongreveLamsdell2016-1.0.1/CongreveLamsdell2016/build/partial.rdb |binary CongreveLamsdell2016-1.0.1/CongreveLamsdell2016/data/clColours.R |only CongreveLamsdell2016-1.0.1/CongreveLamsdell2016/data/clReferenceTree.R |only CongreveLamsdell2016-1.0.1/CongreveLamsdell2016/inst/CITATION | 1 CongreveLamsdell2016-1.0.1/CongreveLamsdell2016/inst/REFERENCES.bib | 1 CongreveLamsdell2016-1.0.1/CongreveLamsdell2016/inst/doc/Compare-methods.pdf |binary CongreveLamsdell2016-1.0.1/CongreveLamsdell2016/inst/doc/Compare-node-supports.pdf |binary CongreveLamsdell2016-1.0.1/CongreveLamsdell2016/inst/doc/Conduct-analyses.pdf |binary CongreveLamsdell2016-1.0.1/CongreveLamsdell2016/man/clInitializeTernaryQuarts.Rd | 4 - 16 files changed, 48 insertions(+), 28 deletions(-)
More information about CongreveLamsdell2016 at CRAN
Permanent link
Title: An R-Tool for Comprehensive Science Mapping Analysis
Description: Tool for quantitative research in scientometrics and bibliometrics.
It provides various routines for importing bibliographic data from SCOPUS (<http://scopus.com>),
Clarivate Analytics Web of Science (<http://www.webofknowledge.com/>), Cochrane Library (<http://www.cochranelibrary.com/>)
and PubMed (<https://www.ncbi.nlm.nih.gov/pubmed/>) databases, performing bibliometric analysis
and building networks for co-citation, coupling, scientific collaboration and co-word analysis.
Author: Massimo Aria [cre, aut],
Corrado Cuccurullo [aut]
Maintainer: Massimo Aria <aria@unina.it>
Diff between bibliometrix versions 2.1.0 dated 2019-01-11 and 2.1.1 dated 2019-02-07
DESCRIPTION | 10 MD5 | 96 ++--- NAMESPACE | 6 NEWS | 12 R/Hindex.R | 13 R/authorProdOverTime.R | 20 - R/bib2df.R | 10 R/biblioNetwork.R | 27 - R/bradford.R | 10 R/cocMatrix.R | 24 + R/conceptualStructure.R | 49 +- R/convert2df.R | 6 R/histNetwork.R | 10 R/histPlot.R | 2 R/localCitations.R | 10 R/metaTagExtraction.R | 22 + R/networkPlot.R | 44 -- R/plotThematicEvolution.R | 4 R/readFiles.R | 7 R/rpys.R | 12 R/thematicEvolution.R | 39 -- R/thematicMap.R | 128 ++++--- R/trimES.R |only build/partial.rdb |binary build/vignette.rds |binary data/biblio.rda |binary data/biblio_df.rda |binary data/bibtag.rda |binary data/countries.rda |binary data/garfield.rda |binary data/isiCollection.rda |binary data/scientometrics.rda |binary data/scientometrics_text.rda |binary data/scopusCollection.rda |binary data/stopwords.rda |binary inst/biblioshiny/server.R | 636 +++++++++++++++++++++++++++-------- inst/biblioshiny/ui.R | 547 ++++++++++++++++++++---------- inst/doc/bibliometrix-vignette.R | 18 - inst/doc/bibliometrix-vignette.Rmd | 27 + inst/doc/bibliometrix-vignette.html | 642 ++++++++++++------------------------ man/authorProdOverTime.Rd | 1 man/conceptualStructure.Rd | 2 man/histNetwork.Rd | 2 man/localCitations.Rd | 4 man/networkPlot.Rd | 2 man/plotThematicEvolution.Rd | 5 man/thematicEvolution.Rd | 9 man/thematicMap.Rd | 24 - man/trimES.Rd |only vignettes/bibliometrix-vignette.Rmd | 27 + 50 files changed, 1504 insertions(+), 1003 deletions(-)
Title: Small/Large Sample Portfolio Optimization
Description: Two functions for financial portfolio optimization by linear programming are provided. One function implements Benders decomposition algorithm and can be used for very large data sets. The other, applicable for moderate sample sizes, finds optimal portfolio which has the smallest distance to a given benchmark portfolio.
Author: Andrzej Palczewski [aut, cre],
Aleksandra Dabrowska [ctb]
Maintainer: Andrzej Palczewski <A.Palczewski@mimuw.edu.pl>
Diff between PortfolioOptim versions 1.0.3 dated 2017-04-20 and 1.1.1 dated 2019-02-07
DESCRIPTION | 14 +++++++------- MD5 | 24 ++++++++++++++---------- R/BDportfolio_optim.R | 14 +++++++------- R/F_func.R | 1 + R/PortfolioOptimProjection.R | 18 +++++++++--------- R/RISK_post.R | 2 +- R/ZI_projection.R | 19 +++++++++++++------ R/make_diag.R | 2 +- man/BDportfolio_optim.Rd | 10 +++++----- man/PortfolioOptimProjection.Rd | 8 ++++---- man/dot-F_func.Rd |only man/dot-RISK_post.Rd |only man/dot-ZI_projection.Rd |only man/dot-make_diag.Rd |only tests/testthat/test_BDportfolio_optim.R | 3 ++- 15 files changed, 64 insertions(+), 51 deletions(-)
More information about PortfolioOptim at CRAN
Permanent link
Title: Fixed Effects Nonlinear Maximum Likelihood Models
Description: Efficient estimation of maximum likelihood models with multiple fixed-effects. Standard-errors can easily and flexibly be clustered and estimations exported.
Author: Laurent Berge [aut, cre]
Maintainer: Laurent Berge <laurent.berge@uni.lu>
Diff between FENmlm versions 2.3.1 dated 2018-12-07 and 2.4 dated 2019-02-07
FENmlm-2.3.1/FENmlm/man/plot.femlm.cluster.Rd |only FENmlm-2.3.1/FENmlm/man/print.femlm.allClusters.Rd |only FENmlm-2.3.1/FENmlm/src/Rcpp_Parallel_femlm_Functions.cpp |only FENmlm-2.3.1/FENmlm/src/Rcpp_get_derivative.cpp |only FENmlm-2.4/FENmlm/DESCRIPTION | 8 FENmlm-2.4/FENmlm/MD5 | 40 FENmlm-2.4/FENmlm/NAMESPACE | 5 FENmlm-2.4/FENmlm/R/ML_Families.R | 4 FENmlm-2.4/FENmlm/R/MiscFuns.R | 276 +-- FENmlm-2.4/FENmlm/R/RcppExports.R | 124 - FENmlm-2.4/FENmlm/R/femlm.R | 1259 +++----------- FENmlm-2.4/FENmlm/inst/NEWS.Rd | 35 FENmlm-2.4/FENmlm/inst/doc/FENmlm.R | 2 FENmlm-2.4/FENmlm/inst/doc/FENmlm.Rmd | 2 FENmlm-2.4/FENmlm/inst/doc/FENmlm.html | 119 - FENmlm-2.4/FENmlm/man/getFE.Rd | 2 FENmlm-2.4/FENmlm/man/plot.femlm.allClusters.Rd | 3 FENmlm-2.4/FENmlm/man/print.femlm.Rd | 4 FENmlm-2.4/FENmlm/man/res2tex.Rd | 13 FENmlm-2.4/FENmlm/man/summary.femlm.allClusters.Rd |only FENmlm-2.4/FENmlm/src/RcppExports.cpp | 665 +++---- FENmlm-2.4/FENmlm/src/convergence.cpp |only FENmlm-2.4/FENmlm/src/misc_funs.cpp |only FENmlm-2.4/FENmlm/src/parallel_funs.cpp |only FENmlm-2.4/FENmlm/vignettes/FENmlm.Rmd | 2 25 files changed, 979 insertions(+), 1584 deletions(-)
Title: Thematic Cartography
Description: Create and integrate maps in your R workflow. This package helps to design cartographic representations such as proportional symbols, choropleth, typology, flows or discontinuities maps. It also offers several features that improve the graphic presentation of maps, for instance, map palettes, layout elements (scale, north arrow, title...), labels or legends. See Giraud and Lambert (2017) <doi:10.1007/978-3-319-57336-6_13>.
Author: Timothée Giraud [cre, aut],
Nicolas Lambert [aut],
Ian Fellows [cph] (no overlap algorithm for labels, from wordcloud
package)
Maintainer: Timothée Giraud <timothee.giraud@cnrs.fr>
Diff between cartography versions 2.1.2 dated 2018-09-18 and 2.2.0 dated 2019-02-07
cartography-2.1.2/cartography/NEWS |only cartography-2.2.0/cartography/DESCRIPTION | 12 cartography-2.2.0/cartography/MD5 | 182 +- cartography-2.2.0/cartography/NEWS.md |only cartography-2.2.0/cartography/R/Package.R | 13 cartography-2.2.0/cartography/R/barscale.R | 29 cartography-2.2.0/cartography/R/choroLayer.R | 71 cartography-2.2.0/cartography/R/discLayer.R | 38 cartography-2.2.0/cartography/R/dotDensityLayer.R | 19 cartography-2.2.0/cartography/R/getBorders.R | 18 cartography-2.2.0/cartography/R/getBreaks.R | 16 cartography-2.2.0/cartography/R/getFigDim.R | 21 cartography-2.2.0/cartography/R/getGridLayer.R | 143 + cartography-2.2.0/cartography/R/getLinkLayer.R | 32 cartography-2.2.0/cartography/R/getOuterBorders.R | 23 cartography-2.2.0/cartography/R/getPencilLayer.R | 17 cartography-2.2.0/cartography/R/getTiles.R | 55 cartography-2.2.0/cartography/R/gradLinkLayer.R | 19 cartography-2.2.0/cartography/R/gradLinkTypoLayer.R | 36 cartography-2.2.0/cartography/R/labelLayer.R | 27 cartography-2.2.0/cartography/R/layoutLayer.R | 155 - cartography-2.2.0/cartography/R/legends.R | 483 +++-- cartography-2.2.0/cartography/R/north.R | 11 cartography-2.2.0/cartography/R/palettes.R | 2 cartography-2.2.0/cartography/R/propLinkLayer.R | 17 cartography-2.2.0/cartography/R/propSymbolsChoroLayer.R | 49 cartography-2.2.0/cartography/R/propSymbolsLayer.R | 56 cartography-2.2.0/cartography/R/propSymbolsTypoLayer.R | 34 cartography-2.2.0/cartography/R/propTrianglesLayer.R | 39 cartography-2.2.0/cartography/R/smoothLayer.R | 38 cartography-2.2.0/cartography/R/tilesLayer.R | 21 cartography-2.2.0/cartography/R/typoLayer.R | 23 cartography-2.2.0/cartography/R/utils.R | 19 cartography-2.2.0/cartography/README.md | 139 - cartography-2.2.0/cartography/build/vignette.rds |binary cartography-2.2.0/cartography/inst/csv |only cartography-2.2.0/cartography/inst/doc/cartography.R | 643 ++++--- cartography-2.2.0/cartography/inst/doc/cartography.Rmd | 783 +++++--- cartography-2.2.0/cartography/inst/doc/cartography.html | 874 ++++++---- cartography-2.2.0/cartography/inst/doc/cheatsheet.Rmd | 4 cartography-2.2.0/cartography/inst/doc/cheatsheet.html | 4 cartography-2.2.0/cartography/inst/gpkg |only cartography-2.2.0/cartography/man/barscale.Rd | 19 cartography-2.2.0/cartography/man/cartography.Rd | 13 cartography-2.2.0/cartography/man/choroLayer.Rd | 70 cartography-2.2.0/cartography/man/discLayer.Rd | 38 cartography-2.2.0/cartography/man/dotDensityLayer.Rd | 17 cartography-2.2.0/cartography/man/figures |only cartography-2.2.0/cartography/man/getBorders.Rd | 16 cartography-2.2.0/cartography/man/getBreaks.Rd | 16 cartography-2.2.0/cartography/man/getFigDim.Rd | 21 cartography-2.2.0/cartography/man/getGridLayer.Rd | 50 cartography-2.2.0/cartography/man/getLinkLayer.Rd | 17 cartography-2.2.0/cartography/man/getOuterBorders.Rd | 16 cartography-2.2.0/cartography/man/getPencilLayer.Rd | 15 cartography-2.2.0/cartography/man/getTiles.Rd | 33 cartography-2.2.0/cartography/man/gradLinkLayer.Rd | 19 cartography-2.2.0/cartography/man/gradLinkTypoLayer.Rd | 33 cartography-2.2.0/cartography/man/labelLayer.Rd | 27 cartography-2.2.0/cartography/man/layoutLayer.Rd | 53 cartography-2.2.0/cartography/man/legendBarsSymbols.Rd | 15 cartography-2.2.0/cartography/man/legendChoro.Rd | 24 cartography-2.2.0/cartography/man/legendCirclesSymbols.Rd | 35 cartography-2.2.0/cartography/man/legendGradLines.Rd | 11 cartography-2.2.0/cartography/man/legendPropLines.Rd | 13 cartography-2.2.0/cartography/man/legendPropTriangles.Rd | 26 cartography-2.2.0/cartography/man/legendSquaresSymbols.Rd | 14 cartography-2.2.0/cartography/man/legendTypo.Rd | 11 cartography-2.2.0/cartography/man/north.Rd | 11 cartography-2.2.0/cartography/man/propLinkLayer.Rd | 17 cartography-2.2.0/cartography/man/propSymbolsChoroLayer.Rd | 45 cartography-2.2.0/cartography/man/propSymbolsLayer.Rd | 56 cartography-2.2.0/cartography/man/propSymbolsTypoLayer.Rd | 32 cartography-2.2.0/cartography/man/propTrianglesLayer.Rd | 37 cartography-2.2.0/cartography/man/smoothLayer.Rd | 38 cartography-2.2.0/cartography/man/tilesLayer.Rd | 17 cartography-2.2.0/cartography/man/typoLayer.Rd | 23 cartography-2.2.0/cartography/tests |only cartography-2.2.0/cartography/vignettes/cartography.Rmd | 783 +++++--- cartography-2.2.0/cartography/vignettes/cheatsheet.Rmd | 4 cartography-2.2.0/cartography/vignettes/cheatsheet/cartography_cheatsheet.pdf |binary 81 files changed, 3223 insertions(+), 2627 deletions(-)
Title: Diagnostic and Prognostic Meta-Analysis
Description: Meta-analysis of diagnostic and prognostic modeling studies. Summarize estimates of prognostic factors,
diagnostic test accuracy and prediction model performance. Validate, update and
combine published prediction models. Develop new prediction models with data from multiple studies.
Author: Thomas Debray [aut, cre] (<https://orcid.org/0000-0002-1790-2719>),
Valentijn de Jong [aut] (<https://orcid.org/0000-0001-9921-3468>)
Maintainer: Thomas Debray <thomas.debray@gmail.com>
Diff between metamisc versions 0.1.9 dated 2018-05-13 and 0.2.0 dated 2019-02-07
metamisc-0.1.9/metamisc/R/metapred_recalibrate.R |only metamisc-0.1.9/metamisc/man/coef.metapred.Rd |only metamisc-0.1.9/metamisc/tests/testthat/test_ccalc.R |only metamisc-0.1.9/metamisc/tests/testthat/test_metapred.R |only metamisc-0.1.9/metamisc/tests/testthat/test_metapred_recalibrate.R |only metamisc-0.1.9/metamisc/tests/testthat/test_metapred_utils.R |only metamisc-0.1.9/metamisc/tests/testthat/test_oecalc.R |only metamisc-0.1.9/metamisc/tests/testthat/test_valmeta_cstat_freq.R |only metamisc-0.1.9/metamisc/tests/testthat/test_valmeta_oe_bayes.R |only metamisc-0.1.9/metamisc/tests/testthat/test_valmeta_oe_freq.R |only metamisc-0.1.9/metamisc/tests/testthat/testthat.R |only metamisc-0.2.0/metamisc/DESCRIPTION | 31 metamisc-0.2.0/metamisc/MD5 | 102 metamisc-0.2.0/metamisc/NAMESPACE | 68 metamisc-0.2.0/metamisc/R/ccalc.r | 61 metamisc-0.2.0/metamisc/R/metapred.R | 1771 ++++++++-- metamisc-0.2.0/metamisc/R/metapred_formula.R |only metamisc-0.2.0/metamisc/R/metapred_measures.R |only metamisc-0.2.0/metamisc/R/metapred_recal.R |only metamisc-0.2.0/metamisc/R/metapred_utils.R | 540 ++- metamisc-0.2.0/metamisc/R/oecalc.R | 115 metamisc-0.2.0/metamisc/R/plot_utils.r | 86 metamisc-0.2.0/metamisc/R/uvmeta.r | 805 ++-- metamisc-0.2.0/metamisc/R/valmeta.r | 381 +- metamisc-0.2.0/metamisc/R/valmeta_utils.r | 44 metamisc-0.2.0/metamisc/data/Collins.rda |binary metamisc-0.2.0/metamisc/data/DVTipd.rda |binary metamisc-0.2.0/metamisc/data/DVTmodels.rda |binary metamisc-0.2.0/metamisc/data/Daniels.rda |binary metamisc-0.2.0/metamisc/data/EuroSCORE.rda |binary metamisc-0.2.0/metamisc/data/Fibrinogen.rda |binary metamisc-0.2.0/metamisc/data/Framingham.rda |binary metamisc-0.2.0/metamisc/data/Kertai.rda |binary metamisc-0.2.0/metamisc/data/Roberts.rda |binary metamisc-0.2.0/metamisc/data/Scheidler.rda |binary metamisc-0.2.0/metamisc/data/Zhang.rda |binary metamisc-0.2.0/metamisc/man/DVTipd.Rd | 3 metamisc-0.2.0/metamisc/man/ccalc.Rd | 52 metamisc-0.2.0/metamisc/man/fitted.metapred.Rd |only metamisc-0.2.0/metamisc/man/forest.Rd | 52 metamisc-0.2.0/metamisc/man/forest.default.Rd |only metamisc-0.2.0/metamisc/man/forest.metapred.Rd |only metamisc-0.2.0/metamisc/man/forest.mp.cv.val.Rd |only metamisc-0.2.0/metamisc/man/gen.Rd |only metamisc-0.2.0/metamisc/man/metamisc-package.Rd | 8 metamisc-0.2.0/metamisc/man/metapred.Rd | 131 metamisc-0.2.0/metamisc/man/oecalc.Rd | 68 metamisc-0.2.0/metamisc/man/perf.Rd |only metamisc-0.2.0/metamisc/man/plot.fat.Rd | 4 metamisc-0.2.0/metamisc/man/plot.mm_perf.Rd |only metamisc-0.2.0/metamisc/man/plot.valmeta.Rd | 9 metamisc-0.2.0/metamisc/man/recalibrate.Rd | 2 metamisc-0.2.0/metamisc/man/riley.Rd | 3 metamisc-0.2.0/metamisc/man/se.Rd |only metamisc-0.2.0/metamisc/man/subset.metapred.Rd |only metamisc-0.2.0/metamisc/man/uvmeta.Rd | 9 metamisc-0.2.0/metamisc/man/valmeta.Rd | 58 metamisc-0.2.0/metamisc/tests/testthat/test_formula.R |only metamisc-0.2.0/metamisc/tests/testthat/test_metapred_1_utils.R |only metamisc-0.2.0/metamisc/tests/testthat/test_metapred_2_fit.R |only metamisc-0.2.0/metamisc/tests/testthat/test_metapred_3.R |only metamisc-0.2.0/metamisc/tests/testthat/test_metapred_4_recal.R |only metamisc-0.2.0/metamisc/tests/testthat/test_metapred_5_measures.R |only metamisc-0.2.0/metamisc/tests/testthat/test_valmeta_0.R |only metamisc-0.2.0/metamisc/tests/testthat/test_valmeta_1.R |only metamisc-0.2.0/metamisc/tests/testthat/test_valmeta_2.R |only metamisc-0.2.0/metamisc/tests/testthat/test_valmeta_3.R |only metamisc-0.2.0/metamisc/tests/testthat/test_valmeta_4_oe_freq.R |only metamisc-0.2.0/metamisc/tests/testthat/test_valmeta_5_oe_bayes.R |only metamisc-0.2.0/metamisc/tests/testthat/test_valmeta_6_plots.R |only 70 files changed, 3062 insertions(+), 1341 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-01-30 1.0.0
Title: Embedded JavaScript Engine for R
Description: An R interface to Google's open source JavaScript engine. This
package can now be compiled either with V8 version 6 (LTS) from nodejs
or with the legacy 3.14/3.15 version of V8.
Author: Jeroen Ooms
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>
Diff between V8 versions 1.5 dated 2017-04-25 and 2.0 dated 2019-02-07
V8-1.5/V8/src/V8.cpp |only V8-1.5/V8/src/register.c |only V8-1.5/V8/src/v8_json.h |only V8-1.5/V8/src/v8_typed_array.cpp |only V8-1.5/V8/src/v8_typed_array.h |only V8-1.5/V8/tools/version.cpp |only V8-2.0/V8/DESCRIPTION | 28 - V8-2.0/V8/MD5 | 55 +- V8-2.0/V8/NAMESPACE | 1 V8-2.0/V8/NEWS | 13 V8-2.0/V8/R/RcppExports.R | 24 - V8-2.0/V8/R/V8.R | 12 V8-2.0/V8/R/onLoad.R | 4 V8-2.0/V8/build/vignette.rds |binary V8-2.0/V8/configure | 68 +-- V8-2.0/V8/inst/doc/npm.Rmd | 17 V8-2.0/V8/inst/doc/npm.html | 397 +++++++++++++++++--- V8-2.0/V8/inst/doc/v8_intro.Rmd | 4 V8-2.0/V8/inst/doc/v8_intro.html | 572 ++++++++++++++++++++++-------- V8-2.0/V8/man/V8.Rd | 3 V8-2.0/V8/src/Makevars.in | 8 V8-2.0/V8/src/Makevars.win | 26 - V8-2.0/V8/src/RcppExports.cpp | 72 +-- V8-2.0/V8/src/bindings.cpp |only V8-2.0/V8/src/legacy |only V8-2.0/V8/tests/testthat/test_exception.R |only V8-2.0/V8/tools/test.cpp |only V8-2.0/V8/tools/winlibs.R | 17 V8-2.0/V8/vignettes/npm.Rmd | 17 V8-2.0/V8/vignettes/v8_intro.Rmd | 4 30 files changed, 958 insertions(+), 384 deletions(-)
Title: Epistemic Network Analysis
Description: ENA (Shaffer, D. W. (2017) Quantitative Ethnography. ISBN: 0578191687) is a method used to identify meaningful and quantifiable patterns in discourse or reasoning. ENA moves beyond the traditional frequency-based assessments by examining the structure of the co-occurrence, or connections in coded data. Moreover, compared to other methodological approaches, ENA has the novelty of (1) modeling whole networks of connections and (2) affording both quantitative and qualitative comparisons between different network models. Shaffer, D.W., Collier, W., & Ruis, A.R. (2016) <doi:10.18608/jla.2016.33.3>.
Author: Cody L Marquart [aut, cre],
Zachari Swiecki [aut],
Wesley Collier [aut],
Brendan Eagan [aut],
Roman Woodward [aut],
David Williamson Shaffer [aut]
Maintainer: Cody L Marquart <cody.marquart@wisc.edu>
Diff between rENA versions 0.1.5 dated 2018-06-18 and 0.1.6 dated 2019-02-07
rENA-0.1.5/rENA/R/ena.generate.R |only rENA-0.1.5/rENA/R/put.s3.object.R |only rENA-0.1.6/rENA/DESCRIPTION | 8 - rENA-0.1.6/rENA/MD5 | 58 +++---- rENA-0.1.6/rENA/R/ENAdata.R | 46 ++++- rENA-0.1.6/rENA/R/ENArotation.set.R | 3 rENA-0.1.6/rENA/R/accumulate.data.R | 80 ++++++---- rENA-0.1.6/rENA/R/ena.accumulate.data.R | 26 --- rENA-0.1.6/rENA/R/ena.accumulate.data.file.R | 14 - rENA-0.1.6/rENA/R/ena.conversations.R | 23 ++ rENA-0.1.6/rENA/R/ena.plot.network.R | 6 rENA-0.1.6/rENA/R/ena.unit.group.R | 13 + rENA-0.1.6/rENA/R/ena.writeup.R | 6 rENA-0.1.6/rENA/R/rdata.to.set.R |only rENA-0.1.6/rENA/R/xlsx.to.s3csv.R | 35 ++++ rENA-0.1.6/rENA/data/RS.data.rda |binary rENA-0.1.6/rENA/demo/fullExample.R | 4 rENA-0.1.6/rENA/inst/include/rENA_RcppExports.h | 8 + rENA-0.1.6/rENA/inst/rmd/methods.rmd | 8 - rENA-0.1.6/rENA/man/ena.accumulate.data.Rd | 22 -- rENA-0.1.6/rENA/man/ena.plot.Rd | 3 rENA-0.1.6/rENA/man/ena.plot.group.Rd | 11 - rENA-0.1.6/rENA/man/ena.plot.network.Rd | 14 + rENA-0.1.6/rENA/man/ena.plot.points.Rd | 11 - rENA-0.1.6/rENA/man/ena.plot.trajectory.Rd | 4 rENA-0.1.6/rENA/src/Makevars | 17 +- rENA-0.1.6/rENA/src/Makevars.win | 2 rENA-0.1.6/rENA/src/RcppExports.cpp | 16 ++ rENA-0.1.6/rENA/src/ena.cpp | 1 rENA-0.1.6/rENA/src/ref_window_df.cpp | 16 +- rENA-0.1.6/rENA/src/ref_window_parallel.cpp |only rENA-0.1.6/rENA/tests/testthat/test.ena.accumulate.data.file.R | 2 32 files changed, 285 insertions(+), 172 deletions(-)
Title: Managing Larger Data on a GitHub Repository
Description: Because larger (> 50 MB) data files cannot easily be committed to git,
a different approach is required to manage data associated with an analysis in a
GitHub repository. This package provides a simple work-around by allowing larger
(up to 2 GB) data files to piggyback on a repository as assets attached to individual
GitHub releases. These files are not handled by git in any way, but instead are
uploaded, downloaded, or edited directly by calls through the GitHub API. These
data files can be versioned manually by creating different releases. This approach
works equally well with public or private repositories. Data can be uploaded
and downloaded programmatically from scripts. No authentication is required to
download data from public repositories.
Author: Carl Boettiger [aut, cre, cph]
(<https://orcid.org/0000-0002-1642-628X>),
Mark Padgham [ctb] (<https://orcid.org/0000-0003-2172-5265>),
Jeffrey O Hanson [ctb] (<https://orcid.org/0000-0002-4716-6134>)
Maintainer: Carl Boettiger <cboettig@gmail.com>
Diff between piggyback versions 0.0.9 dated 2019-01-08 and 0.0.10 dated 2019-02-07
DESCRIPTION | 6 +++--- MD5 | 20 ++++++++++---------- NEWS.md | 21 +++++++++++++++------ R/pb_download.R | 3 +++ R/pb_info.R | 27 ++++++++++++++++++++++----- R/pb_upload.R | 37 +++++++++++++++++++++++++++++-------- inst/doc/alternatives.html | 4 ++-- inst/doc/intro.html | 4 ++-- man/pb_upload.Rd | 12 ++++++------ tests/testthat/test-timestamps.R | 4 +--- tests/testthat/test-with-auth.R | 2 -- 11 files changed, 93 insertions(+), 47 deletions(-)