Title: Cross-Platform 'zip' Compression
Description: Cross-Platform 'zip' Compression Library. A replacement
for the 'zip' function, that does not require any additional
external tools on any platform.
Author: Gábor Csárdi, Kuba Podgórski, Rich Geldreich
Maintainer: Gábor Csárdi <csardi.gabor@gmail.com>
Diff between zip versions 1.0.0 dated 2017-04-25 and 2.0.0 dated 2019-02-25
DESCRIPTION | 14 MD5 | 52 NAMESPACE | 5 NEWS.md | 24 R/assertions.R |only R/process.R |only R/utils.R | 127 R/zip.R | 181 - README.md | 126 inst |only man/unzip.Rd |only man/unzip_process.Rd |only man/zip.Rd | 79 man/zip_list.Rd | 3 man/zip_process.Rd |only src/Makevars |only src/Makevars.win |only src/init.c | 12 src/install.libs.R |only src/miniz.c |only src/miniz.h | 5410 +++++--------------------------- src/rzip.c | 243 + src/tools |only src/zip.c | 984 ++--- src/zip.h | 227 - tests/testthat/helper.R |only tests/testthat/test-errors.R | 52 tests/testthat/test-get-zip-data-path.R |only tests/testthat/test-get-zip-data.R |only tests/testthat/test-large-files.R |only tests/testthat/test-unzip-process.R |only tests/testthat/test-unzip.R |only tests/testthat/test-zip-list.R | 7 tests/testthat/test-zip-process.R |only tests/testthat/test-zip.R | 197 - tests/testthat/test-zipr.R |only 36 files changed, 2209 insertions(+), 5534 deletions(-)
Title: Thermodynamic Calculations and Diagrams for Geochemistry
Description: An integrated set of tools for thermodynamic calculations in
aqueous geochemistry and geobiochemistry. Functions are provided for writing
balanced reactions to form species from user-selected basis species and for
calculating the standard molal properties of species and reactions, including
the standard Gibbs energy and equilibrium constant. Calculations of the
non-equilibrium chemical affinity and equilibrium chemical activity of species
can be portrayed on diagrams as a function of temperature, pressure, or
activity of basis species; in two dimensions, this gives a maximum affinity or
predominance diagram. The diagrams have formatted chemical formulas and axis
labels, and water stability limits can be added to Eh-pH, oxygen fugacity-
temperature, and other diagrams with a redox variable. The package has been
developed to handle common calculations in aqueous geochemistry, such as
solubility due to complexation of metal ions, mineral buffers of redox or pH,
and changing the basis species across a diagram ("mosaic diagrams"). CHNOSZ
also has unique capabilities for comparing the compositional and thermodynamic
properties of different proteins.
Author: Jeffrey Dick [aut, cre] (<https://orcid.org/0000-0002-0687-5890>),
R Core Team [ctb] (code derived from R's pmax())
Maintainer: Jeffrey Dick <j3ffdick@gmail.com>
Diff between CHNOSZ versions 1.2.0 dated 2019-02-10 and 1.3.0 dated 2019-02-25
CHNOSZ-1.2.0/CHNOSZ/data |only CHNOSZ-1.2.0/CHNOSZ/inst/extdata/thermo/BZA10.csv |only CHNOSZ-1.2.0/CHNOSZ/inst/extdata/thermo/DLEN67.csv |only CHNOSZ-1.2.0/CHNOSZ/inst/extdata/thermo/RH98_Table15.csv |only CHNOSZ-1.2.0/CHNOSZ/inst/extdata/thermo/SK95.csv |only CHNOSZ-1.2.0/CHNOSZ/inst/extdata/thermo/obigt_check.csv |only CHNOSZ-1.2.0/CHNOSZ/man/data.Rd |only CHNOSZ-1.3.0/CHNOSZ/DESCRIPTION | 8 CHNOSZ-1.3.0/CHNOSZ/MD5 | 332 ++++++------ CHNOSZ-1.3.0/CHNOSZ/NAMESPACE | 4 CHNOSZ-1.3.0/CHNOSZ/R/AkDi.R |only CHNOSZ-1.3.0/CHNOSZ/R/add.obigt.R | 24 CHNOSZ-1.3.0/CHNOSZ/R/add.protein.R | 4 CHNOSZ-1.3.0/CHNOSZ/R/affinity.R | 6 CHNOSZ-1.3.0/CHNOSZ/R/basis.R | 12 CHNOSZ-1.3.0/CHNOSZ/R/berman.R | 2 CHNOSZ-1.3.0/CHNOSZ/R/buffer.R | 12 CHNOSZ-1.3.0/CHNOSZ/R/diagram.R | 74 +- CHNOSZ-1.3.0/CHNOSZ/R/examples.R | 2 CHNOSZ-1.3.0/CHNOSZ/R/findit.R | 4 CHNOSZ-1.3.0/CHNOSZ/R/hkf.R | 6 CHNOSZ-1.3.0/CHNOSZ/R/info.R | 21 CHNOSZ-1.3.0/CHNOSZ/R/makeup.R | 6 CHNOSZ-1.3.0/CHNOSZ/R/mosaic.R | 4 CHNOSZ-1.3.0/CHNOSZ/R/nonideal.R | 20 CHNOSZ-1.3.0/CHNOSZ/R/palply.R | 4 CHNOSZ-1.3.0/CHNOSZ/R/protein.info.R | 11 CHNOSZ-1.3.0/CHNOSZ/R/retrieve.R |only CHNOSZ-1.3.0/CHNOSZ/R/species.R | 15 CHNOSZ-1.3.0/CHNOSZ/R/subcrt.R | 23 CHNOSZ-1.3.0/CHNOSZ/R/swap.basis.R | 12 CHNOSZ-1.3.0/CHNOSZ/R/thermo.R |only CHNOSZ-1.3.0/CHNOSZ/R/util.affinity.R | 4 CHNOSZ-1.3.0/CHNOSZ/R/util.args.R | 2 CHNOSZ-1.3.0/CHNOSZ/R/util.data.R | 31 - CHNOSZ-1.3.0/CHNOSZ/R/util.expression.R | 9 CHNOSZ-1.3.0/CHNOSZ/R/util.formula.R | 8 CHNOSZ-1.3.0/CHNOSZ/R/util.misc.R | 6 CHNOSZ-1.3.0/CHNOSZ/R/util.plot.R | 4 CHNOSZ-1.3.0/CHNOSZ/R/util.seq.R | 2 CHNOSZ-1.3.0/CHNOSZ/R/util.units.R | 28 - CHNOSZ-1.3.0/CHNOSZ/R/water.R | 18 CHNOSZ-1.3.0/CHNOSZ/R/zzz.R | 9 CHNOSZ-1.3.0/CHNOSZ/demo/00Index | 1 CHNOSZ-1.3.0/CHNOSZ/demo/AkDi.R |only CHNOSZ-1.3.0/CHNOSZ/demo/DEW.R | 6 CHNOSZ-1.3.0/CHNOSZ/demo/NaCl.R | 57 +- CHNOSZ-1.3.0/CHNOSZ/demo/Shh.R | 6 CHNOSZ-1.3.0/CHNOSZ/demo/TCA.R | 2 CHNOSZ-1.3.0/CHNOSZ/demo/adenine.R | 2 CHNOSZ-1.3.0/CHNOSZ/demo/affinity.R | 2 CHNOSZ-1.3.0/CHNOSZ/demo/bugstab.R | 2 CHNOSZ-1.3.0/CHNOSZ/demo/copper.R | 4 CHNOSZ-1.3.0/CHNOSZ/demo/dehydration.R | 14 CHNOSZ-1.3.0/CHNOSZ/demo/glycinate.R | 4 CHNOSZ-1.3.0/CHNOSZ/demo/go-IU.R | 28 - CHNOSZ-1.3.0/CHNOSZ/demo/lambda.R | 1 CHNOSZ-1.3.0/CHNOSZ/demo/mosaic.R | 2 CHNOSZ-1.3.0/CHNOSZ/demo/protbuff.R | 2 CHNOSZ-1.3.0/CHNOSZ/demo/protein.equil.R | 5 CHNOSZ-1.3.0/CHNOSZ/demo/sources.R | 12 CHNOSZ-1.3.0/CHNOSZ/demo/wjd.R | 2 CHNOSZ-1.3.0/CHNOSZ/demo/yeastgfp.R | 3 CHNOSZ-1.3.0/CHNOSZ/inst/CHECKLIST | 2 CHNOSZ-1.3.0/CHNOSZ/inst/NEWS | 75 ++ CHNOSZ-1.3.0/CHNOSZ/inst/doc/anintro.R | 43 - CHNOSZ-1.3.0/CHNOSZ/inst/doc/anintro.Rmd | 58 +- CHNOSZ-1.3.0/CHNOSZ/inst/doc/anintro.html | 233 ++++---- CHNOSZ-1.3.0/CHNOSZ/inst/doc/eos-regress.R | 5 CHNOSZ-1.3.0/CHNOSZ/inst/doc/eos-regress.Rmd | 12 CHNOSZ-1.3.0/CHNOSZ/inst/doc/eos-regress.html | 27 CHNOSZ-1.3.0/CHNOSZ/inst/doc/equilibrium.R | 4 CHNOSZ-1.3.0/CHNOSZ/inst/doc/equilibrium.Rnw | 4 CHNOSZ-1.3.0/CHNOSZ/inst/doc/equilibrium.pdf |binary CHNOSZ-1.3.0/CHNOSZ/inst/doc/hotspring.R | 4 CHNOSZ-1.3.0/CHNOSZ/inst/doc/hotspring.Rnw | 4 CHNOSZ-1.3.0/CHNOSZ/inst/doc/hotspring.pdf |binary CHNOSZ-1.3.0/CHNOSZ/inst/doc/mklinks.sh | 6 CHNOSZ-1.3.0/CHNOSZ/inst/doc/obigt.R | 68 +- CHNOSZ-1.3.0/CHNOSZ/inst/doc/obigt.Rmd | 79 +- CHNOSZ-1.3.0/CHNOSZ/inst/doc/obigt.html | 319 +++++++---- CHNOSZ-1.3.0/CHNOSZ/inst/extdata/OBIGT/AS04.csv |only CHNOSZ-1.3.0/CHNOSZ/inst/extdata/OBIGT/AkDi.csv |only CHNOSZ-1.3.0/CHNOSZ/inst/extdata/OBIGT/SLOP98.csv | 117 +++- CHNOSZ-1.3.0/CHNOSZ/inst/extdata/OBIGT/SUPCRT92.csv | 1 CHNOSZ-1.3.0/CHNOSZ/inst/extdata/OBIGT/inorganic_aq.csv.xz |binary CHNOSZ-1.3.0/CHNOSZ/inst/extdata/OBIGT/inorganic_gas.csv.xz |binary CHNOSZ-1.3.0/CHNOSZ/inst/extdata/OBIGT/organic_aq.csv.xz |binary CHNOSZ-1.3.0/CHNOSZ/inst/extdata/OBIGT/organic_cr.csv.xz |binary CHNOSZ-1.3.0/CHNOSZ/inst/extdata/OBIGT/organic_gas.csv.xz |binary CHNOSZ-1.3.0/CHNOSZ/inst/extdata/OBIGT/organic_liq.csv.xz |binary CHNOSZ-1.3.0/CHNOSZ/inst/extdata/OBIGT/refs.csv |only CHNOSZ-1.3.0/CHNOSZ/inst/extdata/adds |only CHNOSZ-1.3.0/CHNOSZ/inst/extdata/cpetc/AD03_Fig1a.csv |only CHNOSZ-1.3.0/CHNOSZ/inst/extdata/cpetc/AD03_Fig1b.csv |only CHNOSZ-1.3.0/CHNOSZ/inst/extdata/cpetc/AD03_Fig1c.csv |only CHNOSZ-1.3.0/CHNOSZ/inst/extdata/cpetc/AD03_Fig1d.csv |only CHNOSZ-1.3.0/CHNOSZ/inst/extdata/thermo/buffer.csv |only CHNOSZ-1.3.0/CHNOSZ/inst/extdata/thermo/element.csv |only CHNOSZ-1.3.0/CHNOSZ/inst/extdata/thermo/groups.csv |only CHNOSZ-1.3.0/CHNOSZ/inst/extdata/thermo/opt.csv |only CHNOSZ-1.3.0/CHNOSZ/inst/extdata/thermo/protein.csv |only CHNOSZ-1.3.0/CHNOSZ/man/EOSregress.Rd | 2 CHNOSZ-1.3.0/CHNOSZ/man/NaCl.Rd | 2 CHNOSZ-1.3.0/CHNOSZ/man/add.obigt.Rd | 12 CHNOSZ-1.3.0/CHNOSZ/man/add.protein.Rd | 2 CHNOSZ-1.3.0/CHNOSZ/man/affinity.Rd | 2 CHNOSZ-1.3.0/CHNOSZ/man/basis.Rd | 2 CHNOSZ-1.3.0/CHNOSZ/man/berman.Rd | 10 CHNOSZ-1.3.0/CHNOSZ/man/buffer.Rd | 6 CHNOSZ-1.3.0/CHNOSZ/man/diagram.Rd | 6 CHNOSZ-1.3.0/CHNOSZ/man/eos.Rd | 23 CHNOSZ-1.3.0/CHNOSZ/man/equilibrate.Rd | 2 CHNOSZ-1.3.0/CHNOSZ/man/examples.Rd | 15 CHNOSZ-1.3.0/CHNOSZ/man/extdata.Rd | 5 CHNOSZ-1.3.0/CHNOSZ/man/info.Rd | 2 CHNOSZ-1.3.0/CHNOSZ/man/ionize.aa.Rd | 2 CHNOSZ-1.3.0/CHNOSZ/man/makeup.Rd | 2 CHNOSZ-1.3.0/CHNOSZ/man/mosaic.Rd | 2 CHNOSZ-1.3.0/CHNOSZ/man/nonideal.Rd | 8 CHNOSZ-1.3.0/CHNOSZ/man/objective.Rd | 4 CHNOSZ-1.3.0/CHNOSZ/man/protein.Rd | 6 CHNOSZ-1.3.0/CHNOSZ/man/protein.info.Rd | 10 CHNOSZ-1.3.0/CHNOSZ/man/retrieve.Rd |only CHNOSZ-1.3.0/CHNOSZ/man/revisit.Rd | 2 CHNOSZ-1.3.0/CHNOSZ/man/solubility.Rd | 2 CHNOSZ-1.3.0/CHNOSZ/man/species.Rd | 2 CHNOSZ-1.3.0/CHNOSZ/man/subcrt.Rd | 12 CHNOSZ-1.3.0/CHNOSZ/man/swap.basis.Rd | 8 CHNOSZ-1.3.0/CHNOSZ/man/thermo.Rd |only CHNOSZ-1.3.0/CHNOSZ/man/util.array.Rd | 2 CHNOSZ-1.3.0/CHNOSZ/man/util.data.Rd | 4 CHNOSZ-1.3.0/CHNOSZ/man/util.expression.Rd | 15 CHNOSZ-1.3.0/CHNOSZ/man/util.fasta.Rd | 2 CHNOSZ-1.3.0/CHNOSZ/man/util.formula.Rd | 4 CHNOSZ-1.3.0/CHNOSZ/man/util.matrix.Rd | 2 CHNOSZ-1.3.0/CHNOSZ/man/util.misc.Rd | 4 CHNOSZ-1.3.0/CHNOSZ/man/util.seq.Rd | 2 CHNOSZ-1.3.0/CHNOSZ/man/util.units.Rd | 2 CHNOSZ-1.3.0/CHNOSZ/man/util.water.Rd | 8 CHNOSZ-1.3.0/CHNOSZ/man/water.Rd | 7 CHNOSZ-1.3.0/CHNOSZ/man/wjd.Rd | 2 CHNOSZ-1.3.0/CHNOSZ/man/yeast.Rd | 2 CHNOSZ-1.3.0/CHNOSZ/tests/testthat/test-DEW.R | 2 CHNOSZ-1.3.0/CHNOSZ/tests/testthat/test-add.protein.R | 2 CHNOSZ-1.3.0/CHNOSZ/tests/testthat/test-affinity.R | 4 CHNOSZ-1.3.0/CHNOSZ/tests/testthat/test-basis.R | 4 CHNOSZ-1.3.0/CHNOSZ/tests/testthat/test-berman.R | 8 CHNOSZ-1.3.0/CHNOSZ/tests/testthat/test-diagram.R | 17 CHNOSZ-1.3.0/CHNOSZ/tests/testthat/test-eos.R | 38 + CHNOSZ-1.3.0/CHNOSZ/tests/testthat/test-equilibrate.R | 6 CHNOSZ-1.3.0/CHNOSZ/tests/testthat/test-info.R | 13 CHNOSZ-1.3.0/CHNOSZ/tests/testthat/test-ionize.aa.R | 16 CHNOSZ-1.3.0/CHNOSZ/tests/testthat/test-protein.info.R | 2 CHNOSZ-1.3.0/CHNOSZ/tests/testthat/test-recalculate.R | 46 - CHNOSZ-1.3.0/CHNOSZ/tests/testthat/test-retrieve.R |only CHNOSZ-1.3.0/CHNOSZ/tests/testthat/test-revisit.R | 4 CHNOSZ-1.3.0/CHNOSZ/tests/testthat/test-species.R | 2 CHNOSZ-1.3.0/CHNOSZ/tests/testthat/test-subcrt.R | 6 CHNOSZ-1.3.0/CHNOSZ/tests/testthat/test-swap.basis.R | 2 CHNOSZ-1.3.0/CHNOSZ/tests/testthat/test-thermo.R | 6 CHNOSZ-1.3.0/CHNOSZ/tests/testthat/test-util.R | 2 CHNOSZ-1.3.0/CHNOSZ/tests/testthat/test-util.data.R | 24 CHNOSZ-1.3.0/CHNOSZ/tests/testthat/test-util.program.R | 2 CHNOSZ-1.3.0/CHNOSZ/tests/testthat/test-wjd.R | 12 CHNOSZ-1.3.0/CHNOSZ/vignettes/anintro.Rmd | 58 +- CHNOSZ-1.3.0/CHNOSZ/vignettes/eos-regress.Rmd | 12 CHNOSZ-1.3.0/CHNOSZ/vignettes/equilibrium.Rnw | 4 CHNOSZ-1.3.0/CHNOSZ/vignettes/equilibrium.lyx | 4 CHNOSZ-1.3.0/CHNOSZ/vignettes/hotspring.Rnw | 4 CHNOSZ-1.3.0/CHNOSZ/vignettes/hotspring.lyx | 4 CHNOSZ-1.3.0/CHNOSZ/vignettes/mklinks.sh | 6 CHNOSZ-1.3.0/CHNOSZ/vignettes/obigt.Rmd | 79 +- CHNOSZ-1.3.0/CHNOSZ/vignettes/obigt.bib | 100 +++ CHNOSZ-1.3.0/CHNOSZ/vignettes/vig.bib | 12 175 files changed, 1640 insertions(+), 1011 deletions(-)
Title: Landscape Utility Toolbox
Description: Provides utility functions for some of the less-glamorous tasks involved
in landscape analysis. It includes functions to coerce raster data to the
common tibble format and vice versa, it helps with flexible reclassification
tasks of raster data and it provides a function to merge multiple raster.
Furthermore, 'landscapetools' helps landscape scientists to visualize their
data by providing optional themes and utility functions to plot single
landscapes, rasterstacks, -bricks and lists of raster.
Author: Marco Sciaini [aut, cre] (<https://orcid.org/0000-0002-3042-5435>),
Matthias Fritsch [aut],
Maximillian H.K. Hesselbarth [aut]
(<https://orcid.org/0000-0003-1125-9918>),
Jakub Nowosad [aut] (<https://orcid.org/0000-0002-1057-3721>),
Laura Graham [rev] (Laura reviewed the package for rOpenSci, see
https://github.com/ropensci/onboarding/issues/188),
Jeffrey Hollister [rev] (Jeffrey reviewed the package for rOpenSci, see
https://github.com/ropensci/onboarding/issues/188)
Maintainer: Marco Sciaini <sciaini.marco@gmail.com>
Diff between landscapetools versions 0.4.0 dated 2018-10-01 and 0.5.0 dated 2019-02-25
landscapetools-0.4.0/landscapetools/R/util_facetplot.R |only landscapetools-0.4.0/landscapetools/R/util_import_roboto_condensed.R |only landscapetools-0.4.0/landscapetools/R/util_plot.R |only landscapetools-0.4.0/landscapetools/R/utils-pipe.R |only landscapetools-0.4.0/landscapetools/R/zzz.R |only landscapetools-0.4.0/landscapetools/data/fbmmap.rda |only landscapetools-0.4.0/landscapetools/data/grdmap.rda |only landscapetools-0.4.0/landscapetools/data/rndmap.rda |only landscapetools-0.4.0/landscapetools/inst/COPYRIGHTS |only landscapetools-0.4.0/landscapetools/inst/fonts |only landscapetools-0.4.0/landscapetools/man/RobotoCondensed.Rd |only landscapetools-0.4.0/landscapetools/man/fbmmap.Rd |only landscapetools-0.4.0/landscapetools/man/grdmap.Rd |only landscapetools-0.4.0/landscapetools/man/pipe.Rd |only landscapetools-0.4.0/landscapetools/man/rndmap.Rd |only landscapetools-0.4.0/landscapetools/man/util_facetplot.Rd |only landscapetools-0.4.0/landscapetools/man/util_import_roboto_condensed.Rd |only landscapetools-0.4.0/landscapetools/man/util_plot.Rd |only landscapetools-0.4.0/landscapetools/tests/testthat/test_utilfacetplot.R |only landscapetools-0.4.0/landscapetools/tests/testthat/test_utilimportrobotocondensed.R |only landscapetools-0.4.0/landscapetools/tests/testthat/test_utilplot.R |only landscapetools-0.5.0/landscapetools/DESCRIPTION | 30 - landscapetools-0.5.0/landscapetools/MD5 | 120 ++--- landscapetools-0.5.0/landscapetools/NAMESPACE | 23 - landscapetools-0.5.0/landscapetools/NEWS.md | 11 landscapetools-0.5.0/landscapetools/R/data.R | 15 landscapetools-0.5.0/landscapetools/R/landscapetools.R | 10 landscapetools-0.5.0/landscapetools/R/show_landscape.R |only landscapetools-0.5.0/landscapetools/R/theme_nlm.R | 226 ++++------ landscapetools-0.5.0/landscapetools/R/util_as_integer.R |only landscapetools-0.5.0/landscapetools/R/util_binarize.R | 16 landscapetools-0.5.0/landscapetools/R/util_calcboundaries.R | 2 landscapetools-0.5.0/landscapetools/R/util_classify.R | 176 +++++-- landscapetools-0.5.0/landscapetools/R/util_merge.R | 20 landscapetools-0.5.0/landscapetools/R/util_raster2tibble.R | 10 landscapetools-0.5.0/landscapetools/R/util_rescale.R | 10 landscapetools-0.5.0/landscapetools/R/util_tibble2raster.R | 7 landscapetools-0.5.0/landscapetools/R/util_w2cp.R | 5 landscapetools-0.5.0/landscapetools/R/util_writeESRI.R |only landscapetools-0.5.0/landscapetools/build |only landscapetools-0.5.0/landscapetools/data/classified_landscape.rda |only landscapetools-0.5.0/landscapetools/data/fractal_landscape.rda |only landscapetools-0.5.0/landscapetools/data/gradient_landscape.rda |only landscapetools-0.5.0/landscapetools/data/random_landscape.rda |only landscapetools-0.5.0/landscapetools/inst/CITATION |only landscapetools-0.5.0/landscapetools/inst/doc |only landscapetools-0.5.0/landscapetools/man/classified_landscape.Rd |only landscapetools-0.5.0/landscapetools/man/figures/README-unnamed-chunk-1-1.png |binary landscapetools-0.5.0/landscapetools/man/figures/README-unnamed-chunk-2-1.png |binary landscapetools-0.5.0/landscapetools/man/figures/README-unnamed-chunk-3-1.png |binary landscapetools-0.5.0/landscapetools/man/figures/README-unnamed-chunk-4-1.png |binary landscapetools-0.5.0/landscapetools/man/fractal_landscape.Rd |only landscapetools-0.5.0/landscapetools/man/gradient_landscape.Rd |only landscapetools-0.5.0/landscapetools/man/landscapetools-package.Rd | 3 landscapetools-0.5.0/landscapetools/man/random_landscape.Rd |only landscapetools-0.5.0/landscapetools/man/show_landscape.Rd |only landscapetools-0.5.0/landscapetools/man/theme_nlm.Rd | 145 +----- landscapetools-0.5.0/landscapetools/man/util_as_integer.Rd |only landscapetools-0.5.0/landscapetools/man/util_binarize.Rd | 5 landscapetools-0.5.0/landscapetools/man/util_classify.Rd | 73 +-- landscapetools-0.5.0/landscapetools/man/util_merge.Rd | 10 landscapetools-0.5.0/landscapetools/man/util_raster2tibble.Rd | 4 landscapetools-0.5.0/landscapetools/man/util_rescale.Rd | 7 landscapetools-0.5.0/landscapetools/man/util_tibble2raster.Rd | 6 landscapetools-0.5.0/landscapetools/man/util_writeESRI.Rd |only landscapetools-0.5.0/landscapetools/src |only landscapetools-0.5.0/landscapetools/tests/testthat/test_raster2tibble.R | 4 landscapetools-0.5.0/landscapetools/tests/testthat/test_showlandscape.R |only landscapetools-0.5.0/landscapetools/tests/testthat/test_themenlm.R | 20 landscapetools-0.5.0/landscapetools/tests/testthat/test_tibble2raster.R | 2 landscapetools-0.5.0/landscapetools/tests/testthat/test_utilbinarize.R | 10 landscapetools-0.5.0/landscapetools/tests/testthat/test_utilclassify.R | 12 landscapetools-0.5.0/landscapetools/tests/testthat/test_utilmerge.R | 8 landscapetools-0.5.0/landscapetools/tests/testthat/test_utilrescale.R | 8 landscapetools-0.5.0/landscapetools/tests/testthat/test_writeESRI.R |only landscapetools-0.5.0/landscapetools/vignettes |only 76 files changed, 514 insertions(+), 484 deletions(-)
More information about landscapetools at CRAN
Permanent link
Title: Parallel Version of the L-BFGS-B Optimization Method
Description: Provides a parallel version of the L-BFGS-B method of optim(). The main function of the package is optimParallel(), which has the same usage and output as optim(). Using optimParallel() can significantly reduce the optimization time.
Author: Florian Gerber
Maintainer: Florian Gerber <florian.gerber@math.uzh.ch>
Diff between optimParallel versions 0.7-4 dated 2018-10-15 and 0.8 dated 2019-02-25
optimParallel-0.7-4/optimParallel/R/evalParallel.R |only optimParallel-0.7-4/optimParallel/inst/doc/optimParallel_benchmark.R |only optimParallel-0.7-4/optimParallel/inst/doc/optimParallel_examples.R |only optimParallel-0.7-4/optimParallel/tests/testthat/test-evalParallel.R |only optimParallel-0.8/optimParallel/DESCRIPTION | 18 optimParallel-0.8/optimParallel/MD5 | 36 - optimParallel-0.8/optimParallel/NAMESPACE | 3 optimParallel-0.8/optimParallel/NEWS | 9 optimParallel-0.8/optimParallel/R/optimParallel.R | 280 +++++----- optimParallel-0.8/optimParallel/R/zzz.R | 2 optimParallel-0.8/optimParallel/README.md | 8 optimParallel-0.8/optimParallel/build/vignette.rds |binary optimParallel-0.8/optimParallel/inst/doc/optimParallel.pdf |binary optimParallel-0.8/optimParallel/inst/doc/optimParallel.pdf.asis | 2 optimParallel-0.8/optimParallel/man/optimParallel.Rd | 70 -- optimParallel-0.8/optimParallel/tests/testthat/test-issues.R | 24 optimParallel-0.8/optimParallel/tests/testthat/test-object.R | 64 +- optimParallel-0.8/optimParallel/tests/testthat/test-optimParallel.R | 89 +-- optimParallel-0.8/optimParallel/tests/testthat/test-spam.R | 7 optimParallel-0.8/optimParallel/tests/testthat/testsetup.R | 2 optimParallel-0.8/optimParallel/vignettes/optimParallel.pdf.asis | 2 21 files changed, 310 insertions(+), 306 deletions(-)
Title: Routines for Fit, Inference and Diagnostics in LAD Models
Description: LAD (Least Absolute Deviations) estimation for linear regression, confidence intervals, tests of hypotheses, methods for outliers detection, measures of leverage, methods of diagnostics for LAD regression, special diagnostics graphs and measures of leverage. The algorithms are based in Dielman (2005) <doi:10.1080/0094965042000223680>, Elian et al. (2000) <doi:10.1080/03610920008832518> and Dodge (1997) <doi:10.1006/jmva.1997.1666>. This package also has two datasets "houses" and "pollution", respectively, from Narula and Wellington (1977) <doi:10.2307/1268628> and Santos et al. (2016) <doi:10.1371/journal.pone.0163225>.
Author: Kévin Allan Sales Rodrigues <kevin.asr@outlook.com>
Maintainer: Kevin Allan Sales Rodrigues <kevin.asr@outlook.com>
Diff between LadR versions 1.0.5 dated 2018-12-16 and 1.0.6 dated 2019-02-25
DESCRIPTION | 6 +++--- MD5 | 16 +++++++++++----- NAMESPACE | 2 +- R/CookDistance.R |only R/FD.R |only R/FD1.R |only build/partial.rdb |binary data/pollution.rda |binary inst/CITATION | 8 ++++---- man/CookDistance.Rd |only man/FD.Rd |only man/FD1.Rd |only 12 files changed, 19 insertions(+), 13 deletions(-)
Title: Functions for Ecdat
Description: Functions to update data sets in Ecdat and to create,
manipulate, plot and analyze those and similar data sets.
Author: Spencer Graves <spencer.graves@effectivedefense.org>
Maintainer: Spencer Graves <spencer.graves@effectivedefense.org>
Diff between Ecfun versions 0.1-7 dated 2016-05-08 and 0.2-0 dated 2019-02-25
DESCRIPTION | 20 - MD5 | 62 +++-- NAMESPACE | 7 R/BoxCox.R | 3 R/UShouse.senate.R | 33 +- R/asNumericChar.R |only R/asNumericDF.R | 205 +++++++++------- R/confint.var.R |only R/interpPairs.list.R | 490 ++++++++++++++++++++-------------------- R/lines.qqnorm2.R |only R/mergeUShouse.senate.R | 19 - R/plot.qqnorm2.R |only R/plot.qqnorm2s.R |only R/points.qqnorm2.R |only R/qqnorm2.R | 402 ++++++-------------------------- R/qqnorm2s.R | 293 ++++++++++------------- R/qqnorm2t.R |only R/readCookPVI.R | 98 +++++--- R/readCookPVI0.R |only R/readUShouse.R | 182 +++++++------- R/readUSsenate.R | 161 +++++++------ build |only inst |only man/BoxCox.Rd | 21 + man/UShouse.senate.Rd | 151 ++++++------ man/USsenateClass.Rd | 265 +++++++++++---------- man/asNumericDF.Rd | 134 +++++++--- man/confint.var.Rd |only man/financialCrisisFiles.Rd | 24 + man/mergeUShouse.senate.Rd | 221 ++++++++---------- man/qqnorm2.Rd | 463 +++++++++++++++++++++---------------- man/qqnorm2s.Rd | 400 ++++++++++++++++++-------------- man/qqnorm2t.Rd |only man/readCookPVI.Rd | 103 ++++---- man/readUShouse.Rd | 45 ++- man/readUSsenate.Rd | 109 ++++---- man/subNonStandardCharacters.Rd | 44 ++- vignettes |only 38 files changed, 2043 insertions(+), 1912 deletions(-)
Title: Cluster Ensembles
Description: CLUster Ensembles.
Author: Kurt Hornik [aut, cre] (<https://orcid.org/0000-0003-4198-9911>),
Walter Böhm [ctb]
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>
Diff between clue versions 0.3-56 dated 2018-09-10 and 0.3-57 dated 2019-02-25
DESCRIPTION | 6 +++--- MD5 | 36 ++++++++++++++++++------------------ R/addtree.R | 10 ++++++---- R/agreement.R | 4 ++-- R/classes.R | 6 ++++-- R/dissimilarity.R | 4 ++-- R/ensemble.R | 13 +++++++------ R/fuzziness.R | 2 +- R/ultrametric.R | 12 +++++++----- build/partial.rdb |binary build/vignette.rds |binary data/CKME.rda |binary data/Cassini.rda |binary data/GVME.rda |binary data/GVME_Consensus.rda |binary data/Kinship82.rda |binary data/Kinship82_Consensus.rda |binary data/Phonemes.rda |binary inst/doc/clue.pdf |binary 19 files changed, 50 insertions(+), 43 deletions(-)
Title: Data Table Back-End for 'dplyr'
Description: This implements the data table back-end for 'dplyr' so that you
can seamlessly use data table and 'dplyr' together.
Author: Lionel Henry [cre],
Hadley Wickham [aut],
RStudio [cph]
Maintainer: Lionel Henry <lionel@rstudio.com>
Diff between dtplyr versions 0.0.2 dated 2017-04-21 and 0.0.3 dated 2019-02-25
DESCRIPTION | 10 ++-- MD5 | 23 ++++++----- NAMESPACE | 2 NEWS.md | 14 ++++++ R/dtplyr-package.R |only R/grouped-dt.r | 6 +- R/joins.R | 84 ++++++++++++++++++++++++----------------- R/tbl-dt.r | 20 ++++++--- R/utils.R | 24 +++-------- man/dtplyr-package.Rd |only man/join.tbl_dt.Rd | 38 +++++++++++------- tests/testthat/test-joins.R | 42 ++++++++++++++++++++ tests/testthat/test-pronouns.R |only tests/testthat/test-sample.R | 1 14 files changed, 175 insertions(+), 89 deletions(-)
Title: Moran's Eigenvector-Based Spatial Regression Models
Description: Functions for estimating Moran's eigenvector-based
spatial regression models.
For details see Murakami (2018) <arXiv:1703.04467>.
Author: Daisuke Murakami
Maintainer: Daisuke Murakami <dmuraka@ism.ac.jp>
Diff between spmoran versions 0.1.6.1 dated 2019-01-23 and 0.1.6.2 dated 2019-02-25
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/meigen0.R | 17 ++++++++--------- build/vignette.rds |binary 4 files changed, 15 insertions(+), 16 deletions(-)
Title: Powerful and Reliable Tools for Running System Commands in R
Description: Drop-in replacements for the base system2() function with fine control
and consistent behavior across platforms. Supports clean interruption, timeout,
background tasks, and streaming STDIN / STDOUT / STDERR over binary or text
connections. Arguments on Windows automatically get encoded and quoted to work
on different locales.
Author: Jeroen Ooms [aut, cre] (<https://orcid.org/0000-0002-4035-0289>),
Gábor Csárdi [ctb]
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>
Diff between sys versions 2.1 dated 2018-11-13 and 3.0 dated 2019-02-25
sys-2.1/sys/R/fork.R |only sys-2.1/sys/R/util.R |only sys-2.1/sys/cleanup |only sys-2.1/sys/configure |only sys-2.1/sys/man/config.Rd |only sys-2.1/sys/man/eval_fork.Rd |only sys-2.1/sys/src/Makevars.in |only sys-2.1/sys/src/fork.c |only sys-2.1/sys/src/util.c |only sys-2.1/sys/tests/testthat/test-forking.R |only sys-3.0/sys/DESCRIPTION | 18 ++++++--------- sys-3.0/sys/MD5 | 32 ++++++++++----------------- sys-3.0/sys/NAMESPACE | 17 -------------- sys-3.0/sys/NEWS | 7 ++++++ sys-3.0/sys/R/deprecated.R |only sys-3.0/sys/R/exec.R | 9 +++++++ sys-3.0/sys/inst/WORDLIST | 11 --------- sys-3.0/sys/man/deprecated.Rd |only sys-3.0/sys/src/Makevars.win | 9 ------- sys-3.0/sys/src/init.c | 35 ++++-------------------------- sys-3.0/sys/src/win32/exec.c | 3 +- sys-3.0/sys/tests/testthat/test-error.R | 6 ++--- sys-3.0/sys/tests/testthat/test-stdout.R | 12 ++++++++++ 23 files changed, 59 insertions(+), 100 deletions(-)
Title: Statistical Process Control for Stochastic Textured Surfaces
Description: Provides statistical process control tools for stochastic
textured surfaces. The current version supports the following tools:
(1) generic modeling of stochastic textured surfaces.
(2) local defect monitoring and diagnostics in stochastic
textured surfaces, which was proposed by Bui and Apley (2018a)
<doi:10.1080/00401706.2017.1302362>.
(3) global change monitoring in the nature of stochastic
textured surfaces, which was proposed by Bui and Apley (2018b)
<doi:10.1080/00224065.2018.1507559>.
(4) computation of dissimilarity matrix of stochastic textured
surface images, which was proposed by Bui and Apley (2019b)
<doi:10.1016/j.csda.2019.01.019>.
Author: Anh Bui [aut, cre] and Daniel Apley [ths]
Maintainer: Anh Bui <atbui@u.northwestern.edu>
Diff between spc4sts versions 0.4.0 dated 2019-01-24 and 0.4.2 dated 2019-02-25
DESCRIPTION | 9 +++++---- MD5 | 32 ++++++++++++++++++-------------- NAMESPACE | 4 ++++ R/disMat.R | 2 +- R/monitoringStat.R | 5 +++-- R/print.climit.R |only R/print.exptailecdf.R |only R/print.monitoringStat.R |only R/print.surfacemodel.R |only R/sarGen.R | 2 +- R/surfacemodel.R | 5 +++-- man/climit.Rd | 12 +++++++++++- man/dataPrep.Rd | 2 +- man/diagnoseLD.Rd | 17 ++--------------- man/disMat.Rd | 2 +- man/exptailecdf.Rd | 4 ++-- man/monitoringStat.Rd | 12 +++--------- man/spc4sts-package.Rd | 2 +- man/surfacemodel.Rd | 1 + 19 files changed, 57 insertions(+), 54 deletions(-)
Title: R Source Code Similarity Evaluation
Description: An Implementation of a novel method to determine similarity of R
functions based on program dependence graphs,
see Bartoszuk, Gagolewski (2017) <doi:10.1109/FUZZ-IEEE.2017.8015582>.
Possible use cases include
plagiarism detection among students' homework assignments.
Author: Maciej Bartoszuk [aut, cre],
Marek Gagolewski [aut]
Maintainer: Maciej Bartoszuk <bartoszuk@rexamine.com>
Diff between SimilaR versions 1.0.2 dated 2018-06-21 and 1.0.3 dated 2019-02-25
DESCRIPTION | 8 ++++---- MD5 | 5 +++-- src/postprocessingPDG.cpp | 5 +++-- tests/testthat/test-algorithm.R |only 4 files changed, 10 insertions(+), 8 deletions(-)
Title: Detect the Language of Text
Description: With no external dependencies and
support for 335 languages; all languages spoken by
more than one million speakers. 'Franc' is a port
of the 'JavaScript' project of the same name,
see <https://github.com/wooorm/franc>.
Author: Gabor Csardi, Titus Wormer, Maciej Ceglowski, Jacob R. Rideout,
and Kent S. Johnson
Maintainer: Gábor Csárdi <csardi.gabor@gmail.com>
Diff between franc versions 1.1.1 dated 2015-11-12 and 1.1.2 dated 2019-02-25
DESCRIPTION | 14 +++++++------- LICENSE | 4 ++-- MD5 | 20 ++++++++++---------- NEWS.md | 6 +++++- R/franc.R | 6 +++--- R/speakers.R | 6 +++--- inst/README.Rmd | 9 +++++---- inst/README.md | 9 +++++---- man/franc.Rd | 1 - man/franc_all.Rd | 5 ++--- man/speakers.Rd | 1 - 11 files changed, 42 insertions(+), 39 deletions(-)
Title: R Interface to the ClassyFire RESTful API
Description: Access to the ClassyFire RESTful API <http://classyfire.wishartlab.com>. Retrieve existing entity classifications and submit new entities for classification.
Author: Tom Wilson [aut, cre]
Maintainer: Tom Wilson <tpw2@aber.ac.uk>
Diff between classyfireR versions 0.1.2 dated 2018-12-06 and 0.2.0 dated 2019-02-25
classyfireR-0.1.2/classyfireR/R/entity_classification.R |only classyfireR-0.1.2/classyfireR/R/get_status_code.R |only classyfireR-0.1.2/classyfireR/R/retrieve_classification.R |only classyfireR-0.1.2/classyfireR/R/submit_classification.R |only classyfireR-0.1.2/classyfireR/man/entity_classification.Rd |only classyfireR-0.1.2/classyfireR/man/get_status_code.Rd |only classyfireR-0.1.2/classyfireR/man/retrieve_classification.Rd |only classyfireR-0.1.2/classyfireR/man/submit_classification.Rd |only classyfireR-0.1.2/classyfireR/tests/testthat/test-submission.R |only classyfireR-0.2.0/classyfireR/DESCRIPTION | 15 +-- classyfireR-0.2.0/classyfireR/MD5 | 26 ++--- classyfireR-0.2.0/classyfireR/NAMESPACE | 11 +- classyfireR-0.2.0/classyfireR/NEWS.md | 22 ++-- classyfireR-0.2.0/classyfireR/R/classyfireR.R |only classyfireR-0.2.0/classyfireR/R/get_classification.R |only classyfireR-0.2.0/classyfireR/R/internals.R | 46 ++++++---- classyfireR-0.2.0/classyfireR/inst/CITATION | 9 - classyfireR-0.2.0/classyfireR/inst/classyfireR-manual.pdf |binary classyfireR-0.2.0/classyfireR/man/get_classification.Rd |only classyfireR-0.2.0/classyfireR/tests/testthat/test-classification.R | 15 +-- 20 files changed, 77 insertions(+), 67 deletions(-)
Title: Analyzing Data with Cellwise Outliers
Description: Tools for detecting cellwise outliers and robust methods to analyze data which may contain them.
Author: Jakob Raymaekers [aut, cre],
Peter Rousseeuw [aut],
Wannes Van den Bossche [aut],
Mia Hubert [aut]
Maintainer: Jakob Raymaekers <jakob.raymaekers@kuleuven.be>
Diff between cellWise versions 2.0.10 dated 2018-06-25 and 2.1.0 dated 2019-02-25
cellWise-2.0.10/cellWise/man/DetectDeviatingCells.Rd |only cellWise-2.1.0/cellWise/DESCRIPTION | 22 cellWise-2.1.0/cellWise/MD5 | 73 cellWise-2.1.0/cellWise/NAMESPACE | 17 cellWise-2.1.0/cellWise/R/DDC.R | 224 + cellWise-2.1.0/cellWise/R/DDCpredict.R |only cellWise-2.1.0/cellWise/R/ICPCA.R |only cellWise-2.1.0/cellWise/R/MacroPCA.R |only cellWise-2.1.0/cellWise/R/MacroPCApredict.R |only cellWise-2.1.0/cellWise/R/RcppExports.R | 12 cellWise-2.1.0/cellWise/R/cellMap.R | 517 ++-- cellWise-2.1.0/cellWise/R/checkDataSet.R | 269 +- cellWise-2.1.0/cellWise/R/estLocScale.R | 50 cellWise-2.1.0/cellWise/R/outlierMap.R |only cellWise-2.1.0/cellWise/build/vignette.rds |binary cellWise-2.1.0/cellWise/data/datalist | 1 cellWise-2.1.0/cellWise/data/dposs.rdata |only cellWise-2.1.0/cellWise/inst/doc/DDC_examples.R | 691 +++-- cellWise-2.1.0/cellWise/inst/doc/DDC_examples.Rmd | 751 +++-- cellWise-2.1.0/cellWise/inst/doc/DDC_examples.html | 2028 ++++++---------- cellWise-2.1.0/cellWise/inst/doc/MacroPCA_examples.R |only cellWise-2.1.0/cellWise/inst/doc/MacroPCA_examples.Rmd |only cellWise-2.1.0/cellWise/inst/doc/MacroPCA_examples.html |only cellWise-2.1.0/cellWise/inst/doc/Wrap_examples.html | 32 cellWise-2.1.0/cellWise/man/DDC.Rd |only cellWise-2.1.0/cellWise/man/DDCpredict.Rd |only cellWise-2.1.0/cellWise/man/ICPCA.Rd |only cellWise-2.1.0/cellWise/man/MacroPCA.Rd |only cellWise-2.1.0/cellWise/man/MacroPCApredict.Rd |only cellWise-2.1.0/cellWise/man/cellMap.Rd | 88 cellWise-2.1.0/cellWise/man/checkDataSet.Rd | 38 cellWise-2.1.0/cellWise/man/dog_walker.Rd | 6 cellWise-2.1.0/cellWise/man/dposs.Rd |only cellWise-2.1.0/cellWise/man/estLocScale.Rd | 24 cellWise-2.1.0/cellWise/man/mortality.Rd | 2 cellWise-2.1.0/cellWise/man/outlierMap.Rd |only cellWise-2.1.0/cellWise/man/truncPC.Rd |only cellWise-2.1.0/cellWise/src/DDC.cpp | 240 + cellWise-2.1.0/cellWise/src/DDC.h | 10 cellWise-2.1.0/cellWise/src/LocScaleEstimators.cpp | 180 + cellWise-2.1.0/cellWise/src/LocScaleEstimators.h | 13 cellWise-2.1.0/cellWise/src/Main.cpp | 245 + cellWise-2.1.0/cellWise/src/Makevars | 2 cellWise-2.1.0/cellWise/src/Makevars.win | 2 cellWise-2.1.0/cellWise/src/RcppExports.cpp | 44 cellWise-2.1.0/cellWise/vignettes/DDC_examples.Rmd | 751 +++-- cellWise-2.1.0/cellWise/vignettes/MacroPCA_examples.Rmd |only 47 files changed, 3638 insertions(+), 2694 deletions(-)
Title: Test and Item Analysis via Shiny
Description: Interactive shiny application for analysis of educational tests and
their items.
Author: Patricia Martinkova [aut, cre],
Adela Drabinova [aut],
Ondrej Leder [aut],
Jakub Houdek [aut],
Lubomir Stepanek [ctb],
Tomas Jurica [ctb],
Jana Vorlickova [ctb]
Maintainer: Patricia Martinkova <martinkova@cs.cas.cz>
Diff between ShinyItemAnalysis versions 1.2.9 dated 2018-12-07 and 1.3.0 dated 2019-02-25
DESCRIPTION | 8 MD5 | 54 - NEWS | 58 + R/DDplot.R | 15 R/plotDIFLogistic.R | 40 README.md | 12 inst/CITATION | 25 inst/shiny-examples/ShinyItemAnalysis/counter.Rdata |binary inst/shiny-examples/ShinyItemAnalysis/reporthtml.Rmd | 248 +++- inst/shiny-examples/ShinyItemAnalysis/reportpdf.Rmd | 259 +++- inst/shiny-examples/ShinyItemAnalysis/server.R | 16 inst/shiny-examples/ShinyItemAnalysis/server/DIF.R | 216 +++- inst/shiny-examples/ShinyItemAnalysis/server/Data.R | 4 inst/shiny-examples/ShinyItemAnalysis/server/IRT.R | 475 +++++---- inst/shiny-examples/ShinyItemAnalysis/server/Summary.R | 67 + inst/shiny-examples/ShinyItemAnalysis/server/TraditionalAnalysis.R | 28 inst/shiny-examples/ShinyItemAnalysis/titlepage.sty | 2 inst/shiny-examples/ShinyItemAnalysis/ui.R | 524 +++++----- inst/shiny-examples/ShinyItemAnalysis/ui/About.R | 39 inst/shiny-examples/ShinyItemAnalysis/ui/IRT.R | 18 inst/shiny-examples/ShinyItemAnalysis/ui/IRT/DIRT.R | 22 inst/shiny-examples/ShinyItemAnalysis/www/author_tomas.jpg |only inst/shiny-examples/ShinyItemAnalysis/www/bootstrap.css | 44 inst/shiny-examples/ShinyItemAnalysis/www/busy.js | 2 inst/shiny-examples/ShinyItemAnalysis/www/margins_and_paddings.css | 26 inst/shiny-examples/ShinyItemAnalysis/www/tabs_icons_right.js |only inst/shiny-examples/ShinyItemAnalysis/www/test.js |only inst/shiny-examples/ShinyItemAnalysis/www/toppage.R |only man/DDplot.Rd | 3 man/plotDIFLogistic.Rd | 6 30 files changed, 1415 insertions(+), 796 deletions(-)
More information about ShinyItemAnalysis at CRAN
Permanent link
Title: General-to-Specific (GETS) Modelling and Indicator Saturation
Methods
Description: Automated General-to-Specific (GETS) modelling of the mean and variance of a regression, and indicator saturation methods for detecting and testing for structural breaks in the mean.
Author: Genaro Sucarrat [aut, cre], Felix Pretis [aut], James Reade [aut]
Maintainer: Genaro Sucarrat <genaro.sucarrat@bi.no>
Diff between gets versions 0.17 dated 2019-01-08 and 0.18 dated 2019-02-25
DESCRIPTION | 8 - MD5 | 24 +-- NEWS | 10 + R/gets-internal.R | 4 R/predict.arx.R | 369 +++++++++++++++++++++++++++------------------------- data/hpdata.rda |binary data/infldata.rda |binary data/so2data.rda |binary data/sp500data.rda |binary man/coef.arx.Rd | 6 man/coef.gets.Rd | 6 man/coef.isat.Rd | 6 man/gets-package.Rd | 8 - 13 files changed, 238 insertions(+), 203 deletions(-)
Title: Rename and Encode Data Frames Using External Crosswalk Files
Description: A pair of functions for renaming and encoding data frames
using external crosswalk files. It is especially useful when
constructing master data sets from multiple smaller data
sets that do not name or encode variables consistently
across files. Based on similar commands in 'Stata'.
Author: Benjamin Skinner [aut, cre] (<https://orcid.org/0000-0002-0337-7415>)
Maintainer: Benjamin Skinner <btskinner@virginia.edu>
Diff between crosswalkr versions 0.2.2 dated 2018-11-26 and 0.2.3 dated 2019-02-25
crosswalkr-0.2.2/crosswalkr/tests/testthat/test-recodefrom.R |only crosswalkr-0.2.3/crosswalkr/DESCRIPTION | 8 crosswalkr-0.2.3/crosswalkr/MD5 | 10 crosswalkr-0.2.3/crosswalkr/R/renamefrom.R | 17 crosswalkr-0.2.3/crosswalkr/build/vignette.rds |binary crosswalkr-0.2.3/crosswalkr/inst/doc/crosswalkr.html | 866 +++++------ crosswalkr-0.2.3/crosswalkr/tests/testthat/test-renamefrom.R |only 7 files changed, 475 insertions(+), 426 deletions(-)
Title: Visualization Package for CanvasXpress in R
Description: Enables creation of visualizations using the CanvasXpress framework
in R. CanvasXpress is a standalone JavaScript library for reproducible research
with complete tracking of data and end-user modifications stored in a single
PNG image that can be played back. See <http://canvasxpress.org> for more
information.
Author: Isaac Neuhaus [aut],
Connie Brett [aut, cre]
Maintainer: Connie Brett <connie@aggregate-genius.com>
Diff between canvasXpress versions 1.22.9 dated 2019-01-22 and 1.23.3 dated 2019-02-25
canvasXpress |only 1 file changed
Title: Statistical Package for Analysis Related Cleaning Support
Description: To clean and analyze hospital data, and generate sets for statistical modeling.
Author: Wangjian Zhang, Zhicheng Du, Ziqiang Lin, Jijin Yao, Yanan Jin, Wayne R. Lawrence, Yuantao Hao
Maintainer: Wangjian Zhang <wzhang27@albany.edu>
Diff between rSPARCS versions 0.0.3 dated 2019-01-29 and 0.0.4 dated 2019-02-25
DESCRIPTION | 6 +++--- MD5 | 4 ++-- R/CXover.data.R | 6 +++--- 3 files changed, 8 insertions(+), 8 deletions(-)
Title: Bradley-Terry Models
Description: Specify and fit the Bradley-Terry model, including structured versions in which the parameters are related to explanatory variables through a linear predictor and versions with contest-specific effects, such as a home advantage.
Author: Heather Turner [aut, cre],
David Firth [aut]
Maintainer: Heather Turner <ht@heatherturner.net>
Diff between BradleyTerry2 versions 1.0-8 dated 2017-09-20 and 1.0-9 dated 2019-02-25
DESCRIPTION | 9 MD5 | 88 ++++--- NAMESPACE | 154 ++++++------- NEWS.md | 7 R/CEMS.R | 2 R/Diff.R | 2 R/chameleons.R | 2 R/coef.BTm.R |only R/countsToBinomial.R | 2 R/flatlizards.R | 2 R/icehockey.R | 16 - R/predict.BTglmmPQL.R | 2 R/predict.BTm.R | 4 R/qvcalc.BTabilities.R | 2 R/vcov.BTm.R |only README.md | 53 ++-- TODO |only build/vignette.rds |binary data/icehockey.rda |only data/springall.rda |only inst/CITATION | 4 inst/WORDLIST |only inst/doc/BradleyTerry.R | 526 +++++++++++++++++++++++----------------------- inst/doc/BradleyTerry.pdf |binary man/BTabilities.Rd | 168 +++++++------- man/BTm.Rd | 438 +++++++++++++++++++------------------- man/CEMS.Rd | 340 ++++++++++++++--------------- man/GenDavidson.Rd | 415 ++++++++++++++++++------------------ man/add1.BTm.Rd | 166 +++++++------- man/anova.BTm.Rd | 156 ++++++------- man/baseball.Rd | 120 +++++----- man/chameleons.Rd | 184 ++++++++-------- man/citations.Rd | 110 ++++----- man/countsToBinomial.Rd | 86 +++---- man/flatlizards.Rd | 324 ++++++++++++++-------------- man/football.Rd | 134 +++++------ man/glmmPQL.Rd | 302 +++++++++++++------------- man/glmmPQL.control.Rd | 135 +++++------ man/icehockey.Rd | 244 ++++++++++----------- man/plotProportions.Rd | 429 ++++++++++++++++++------------------- man/predict.BTglmmPQL.Rd | 180 +++++++-------- man/predict.BTm.Rd | 375 ++++++++++++++++---------------- man/qvcalc.BTabilities.Rd | 168 +++++++------- man/reexports.Rd | 32 +- man/residuals.BTm.Rd | 150 ++++++------- man/seeds.Rd | 84 +++---- man/sound.fields.Rd | 188 ++++++++-------- man/springall.Rd | 166 +++++++------- 48 files changed, 2997 insertions(+), 2972 deletions(-)
Title: Interface to 'Azure Resource Manager'
Description: A lightweight but powerful R interface to the 'Azure Resource Manager' REST API. The package exposes classes and methods for 'OAuth' authentication and working with subscriptions and resource groups. It also provides functionality for creating and deleting 'Azure' resources and deploying templates. While 'AzureRMR' can be used to manage any 'Azure' service, it can also be extended by other packages to provide extra functionality for specific services.
Author: Hong Ooi [aut, cre],
Microsoft [cph]
Maintainer: Hong Ooi <hongooi@microsoft.com>
Diff between AzureRMR versions 1.0.0 dated 2018-12-02 and 2.0.0 dated 2019-02-25
AzureRMR-1.0.0/AzureRMR/R/AzureToken.R |only AzureRMR-1.0.0/AzureRMR/man/AzureToken.Rd |only AzureRMR-1.0.0/AzureRMR/man/get_azure_token.Rd |only AzureRMR-2.0.0/AzureRMR/DESCRIPTION | 10 AzureRMR-2.0.0/AzureRMR/MD5 | 77 ++--- AzureRMR-2.0.0/AzureRMR/NAMESPACE | 15 - AzureRMR-2.0.0/AzureRMR/NEWS.md | 24 + AzureRMR-2.0.0/AzureRMR/R/AzureRMR.R | 31 ++ AzureRMR-2.0.0/AzureRMR/R/az_auth.R | 54 +++- AzureRMR-2.0.0/AzureRMR/R/az_login.R |only AzureRMR-2.0.0/AzureRMR/R/az_resgroup.R | 115 +++++++- AzureRMR-2.0.0/AzureRMR/R/az_resource.R | 156 +++++++++-- AzureRMR-2.0.0/AzureRMR/R/az_subscription.R | 57 ++++ AzureRMR-2.0.0/AzureRMR/R/az_template.R | 16 - AzureRMR-2.0.0/AzureRMR/R/call_azure_rm.R | 2 AzureRMR-2.0.0/AzureRMR/R/format.R | 37 -- AzureRMR-2.0.0/AzureRMR/R/is.R | 8 AzureRMR-2.0.0/AzureRMR/R/reexport_AzureAuth.R |only AzureRMR-2.0.0/AzureRMR/R/utils.R | 8 AzureRMR-2.0.0/AzureRMR/README.md | 31 +- AzureRMR-2.0.0/AzureRMR/build/vignette.rds |binary AzureRMR-2.0.0/AzureRMR/inst/doc/extend.R | 14 - AzureRMR-2.0.0/AzureRMR/inst/doc/extend.Rmd | 16 - AzureRMR-2.0.0/AzureRMR/inst/doc/extend.html | 16 - AzureRMR-2.0.0/AzureRMR/inst/doc/intro.R | 173 ++++++------ AzureRMR-2.0.0/AzureRMR/inst/doc/intro.Rmd | 202 ++++++++------- AzureRMR-2.0.0/AzureRMR/inst/doc/intro.html | 194 +++++++------- AzureRMR-2.0.0/AzureRMR/man/az_resource.Rd | 15 - AzureRMR-2.0.0/AzureRMR/man/az_resource_group.Rd | 13 AzureRMR-2.0.0/AzureRMR/man/az_rm.Rd | 16 - AzureRMR-2.0.0/AzureRMR/man/az_subscription.Rd | 7 AzureRMR-2.0.0/AzureRMR/man/azure_login.Rd |only AzureRMR-2.0.0/AzureRMR/man/format.Rd | 7 AzureRMR-2.0.0/AzureRMR/man/is.Rd | 5 AzureRMR-2.0.0/AzureRMR/man/reexports.Rd |only AzureRMR-2.0.0/AzureRMR/man/utils.Rd | 6 AzureRMR-2.0.0/AzureRMR/tests/testthat/test01_auth.R | 17 + AzureRMR-2.0.0/AzureRMR/tests/testthat/test02_sub.R | 4 AzureRMR-2.0.0/AzureRMR/tests/testthat/test03_rg.R | 20 + AzureRMR-2.0.0/AzureRMR/tests/testthat/test04_resource.R | 49 ++- AzureRMR-2.0.0/AzureRMR/tests/testthat/test05_template.R | 10 AzureRMR-2.0.0/AzureRMR/vignettes/extend.Rmd | 16 - AzureRMR-2.0.0/AzureRMR/vignettes/intro.Rmd | 202 ++++++++------- 43 files changed, 1077 insertions(+), 566 deletions(-)
Title: Phylogenetic Ridge Regression Methods for Comparative Studies
Description: Functions for phylogenetic analysis (Castiglione et al, 2017 <doi:10.1111/2041-210X.12954>). The functions perform the estimation of phenotypic evolutionary rates, identification of phenotypic evolutionary rate shifts, quantification of direction and size of evolutionary change in multivariate traits, and the computation of ontogenetic shape vectors.
Author: Pasquale Raia, Silvia Castiglione, Carmela Serio, Alessandro Mondanaro, Marina Melchionna, Mirko Di Febbraro, Antonio Profico, Francesco Carotenuto
Maintainer: Pasquale Raia <pasquale.raia@unina.it>
Diff between RRphylo versions 1.0.0 dated 2018-04-06 and 2.0.3 dated 2019-02-25
DESCRIPTION | 13 MD5 | 91 ++-- NAMESPACE | 205 +++++---- R/DataApes.R | 34 - R/DataCetaceans.R |only R/DataFelids.R |only R/DataOrnithodirans.R | 30 - R/DataUng.R |only R/PGLS_fossil.R |only R/RBC.R | 822 +++++++++++++++++++-------------------- R/RRphylo-package.R | 20 R/RRphylo.R | 506 +++++++++++++++--------- R/angle.matrix.R | 6 R/distNodes.R |only R/evo.dir.R | 10 R/getMommy.R | 70 +-- R/getSis.R | 66 +-- R/makeL1.R | 116 ++--- R/plotRates.R | 4 R/retrieve.angles.R | 2 R/search.conv.R |only R/search.shift.R | 990 +++++++++++++++++++++++------------------------ R/search.trend.R |only R/setBM.R | 250 +++++------ R/swap.phylo.R | 4 R/swapONE.R | 176 ++++---- data/DataCetaceans.rda |only data/DataFelids.rda |only data/DataUng.rda |only man/DataApes.Rd | 54 +- man/DataCetaceans.Rd |only man/DataFelids.Rd |only man/DataOrnithodirans.Rd | 50 +- man/DataUng.Rd |only man/PGLS_fossil.Rd |only man/RBC.Rd | 138 +++--- man/RRphylo-package.Rd | 36 - man/RRphylo.Rd | 135 +++--- man/angle.matrix.Rd | 152 +++---- man/distNodes.Rd |only man/evo.dir.Rd | 257 ++++++------ man/getMommy.Rd | 72 +-- man/getSis.Rd | 60 +- man/makeFossil.Rd | 60 +- man/makeL.Rd | 52 +- man/makeL1.Rd | 52 +- man/plotRates.Rd | 66 +-- man/retrieve.angles.Rd | 322 +++++++-------- man/search.conv.Rd |only man/search.shift.Rd | 210 ++++----- man/search.trend.Rd |only man/setBM.Rd | 97 ++-- man/sizedsubtree.Rd | 66 +-- man/swap.phylo.Rd | 116 ++--- man/swapONE.Rd | 72 +-- 55 files changed, 2863 insertions(+), 2619 deletions(-)
Title: An Easy Way to Descriptive Analysis
Description: Descriptive analysis is essential for publishing medical articles.
This package provides an easy way to conduct the descriptive analysis.
1. Both numeric and factor variables can be handled. For numeric variables, normality test will be applied to choose the parametric and nonparametric test.
2. Both two or more groups can be handled. For groups more than two, the post hoc test will be applied, 'Tukey' for the numeric variables and 'FDR' for the factor variables.
3. T test, ANOVA or Fisher test can be forced to apply.
4. Mean and standard deviation can be forced to display.
Author: Zhicheng Du, Yuantao Hao
Maintainer: Zhicheng Du<dgdzc@hotmail.com>
Diff between easyDes versions 4.0 dated 2018-07-17 and 5.0 dated 2019-02-25
DESCRIPTION | 6 - MD5 | 6 - R/eastDes.R | 204 +++++++++++++++++++++++++++++++++++++++++---------------- man/easyDes.Rd | 22 +++--- 4 files changed, 168 insertions(+), 70 deletions(-)
Title: Bayesian Regression with Time-Varying Coefficients
Description: Bayesian dynamic regression models where the regression
coefficients can vary over time as random walks.
Gaussian, Poisson, and binomial observations are supported.
The Markov chain Monte Carlo computations are done using
Hamiltonian Monte Carlo provided by Stan, using a state space representation
of the model in order to marginalise over the coefficients for efficient sampling.
For non-Gaussian models, walker uses the importance sampling type estimators based on
approximate marginal MCMC as in Vihola, Helske, Franks (2017, <arXiv:1609.02541>).
Author: Jouni Helske [aut, cre] (<https://orcid.org/0000-0001-7130-793X>)
Maintainer: Jouni Helske <jouni.helske@iki.fi>
Diff between walker versions 0.2.4 dated 2019-02-15 and 0.2.4-1 dated 2019-02-25
DESCRIPTION | 10 +++++----- MD5 | 8 ++++---- R/stanmodels.R | 18 ++++++++++-------- README.md | 4 ++++ inst/doc/walker.html | 10 +++++----- 5 files changed, 28 insertions(+), 22 deletions(-)
Title: 'Rcpp' Integration of the 'Streamulus' 'DSEL' for Stream
Processing
Description: The 'Streamulus' (template, header-only) library by
Irit Katriel (at <https://github.com/iritkatriel/streamulus>)
provides a very powerful yet convenient framework for stream
processing. This package connects 'Streamulus' to R by providing
both the header files and all examples.
Author: Dirk Eddelbuettel <edd@debian.org>
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppStreams versions 0.1.2 dated 2019-01-06 and 0.1.3 dated 2019-02-25
ChangeLog | 9 +++ DESCRIPTION | 10 +-- MD5 | 24 ++++---- R/RcppExports.R | 20 +++++- inst/NEWS.Rd | 6 ++ man/commonSubexpressions.Rd | 3 - man/crossAlert.Rd | 3 - man/helloStream.Rd | 3 - man/slidingWindow.Rd | 3 - src/common.cpp | 58 ++++++++++--------- src/hello.cpp | 51 +++++++++-------- src/movavg.cpp | 129 ++++++++++++++++++++++---------------------- src/sliding.cpp | 36 ++++++------ 13 files changed, 198 insertions(+), 157 deletions(-)
Title: Manipulating Labelled Data
Description: Work with labelled data imported from 'SPSS'
or 'Stata' with 'haven' or 'foreign'. This package
provides useful functions to deal with "haven_labelled" and
"haven_labelled_spss" classes introduced by 'haven' package.
Author: Joseph Larmarange [aut, cre] (<https://orcid.org/0000-0001-7097-700X>),
Daniel Ludecke [ctb],
Hadley Wickham [ctb],
Bojanowski Michal [ctb]
Maintainer: Joseph Larmarange <joseph@larmarange.net>
Diff between labelled versions 2.0.2 dated 2019-01-18 and 2.1.0 dated 2019-02-25
labelled-2.0.2/labelled/R/onAttach.R |only labelled-2.1.0/labelled/DESCRIPTION | 10 labelled-2.1.0/labelled/MD5 | 39 +-- labelled-2.1.0/labelled/NEWS.md | 10 labelled-2.1.0/labelled/R/copy_labels.R | 6 labelled-2.1.0/labelled/R/na_values.R | 15 - labelled-2.1.0/labelled/R/to_factor.R | 24 +- labelled-2.1.0/labelled/R/val_labels.R | 10 labelled-2.1.0/labelled/R/var_label.R | 58 ++++- labelled-2.1.0/labelled/README.md | 53 ++--- labelled-2.1.0/labelled/inst/doc/intro_labelled.R | 8 labelled-2.1.0/labelled/inst/doc/intro_labelled.Rmd | 14 - labelled-2.1.0/labelled/inst/doc/intro_labelled.html | 171 +++++++---------- labelled-2.1.0/labelled/man/copy_labels.Rd | 6 labelled-2.1.0/labelled/man/labelled.Rd | 4 labelled-2.1.0/labelled/man/labelled_spss.Rd | 4 labelled-2.1.0/labelled/man/na_values.Rd | 3 labelled-2.1.0/labelled/man/to_factor.Rd | 11 - labelled-2.1.0/labelled/man/var_label.Rd | 32 ++- labelled-2.1.0/labelled/tests/testthat/test-labelled.r | 69 ++++++ labelled-2.1.0/labelled/vignettes/intro_labelled.Rmd | 14 - 21 files changed, 328 insertions(+), 233 deletions(-)
Title: Multi-Site Stochastic Models for Daily Precipitation and
Temperature
Description: Application of multi-site models for daily precipitation and temperature data.
This package is designed for an application to 105 precipitation and 26 temperature gauges located in Switzerland.
It applies fitting procedures and provides weather generators described in the following references:
- Evin, G., A.-C. Favre, and B. Hingray. (2018) <doi:10.5194/hess-22-655-2018>.
- Evin, G., A.-C. Favre, and B. Hingray. (2018) <doi:10.1007/s00704-018-2404-x>.
Author: Guillaume Evin [aut, cre]
Maintainer: Guillaume Evin <guillaume.evin@irstea.fr>
Diff between GWEX versions 1.0.0 dated 2019-02-22 and 1.0.1 dated 2019-02-25
GWEX-1.0.0/GWEX/src/Makevars |only GWEX-1.0.1/GWEX/DESCRIPTION | 10 +++++----- GWEX-1.0.1/GWEX/MD5 | 3 +-- 3 files changed, 6 insertions(+), 7 deletions(-)
Title: Deciphering Central Informative Nodes in Network Analysis
Description: Functions for computing, comparing and demonstrating top informative centrality measures within a network.
Author: Minoo Ashtiani [aut, cre],
Mehdi Mirzaie [ctb],
Mohieddin Jafari [ctb]
Maintainer: Minoo Ashtiani <ashtiani.minoo@gmail.com>
Diff between CINNA versions 1.1.52 dated 2019-02-02 and 1.1.53 dated 2019-02-25
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ inst/doc/CINNA.R | 5 +++++ inst/doc/CINNA.Rmd | 6 +++++- inst/doc/CINNA.html | 44 +++++++++++++++++++++----------------------- vignettes/CINNA.Rmd | 6 +++++- vignettes/bibliography.bib | 3 +-- 7 files changed, 47 insertions(+), 37 deletions(-)
Title: 'eXtra' / 'eXperimental' Functionality for Robust Statistics
Description: Robustness -- 'eXperimental', 'eXtraneous', or 'eXtraordinary'
Functionality for Robust Statistics. In other words, methods which are not
yet well established, often related to methods in package 'robustbase'.
Author: Werner Stahel,
Martin Maechler [aut, cre] (<https://orcid.org/0000-0002-8685-9910>)
and potentially others
Maintainer: Martin Maechler <maechler@stat.math.ethz.ch>
Diff between robustX versions 1.2-3 dated 2019-02-10 and 1.2-4 dated 2019-02-25
ChangeLog | 6 ++++++ DESCRIPTION | 12 ++++++------ MD5 | 10 +++++----- build/partial.rdb |binary demo/rbwheel_ics.R | 2 +- man/rbwheel.Rd | 2 +- 6 files changed, 19 insertions(+), 13 deletions(-)
Title: Sampling from Order Statistics of New Families of Distributions
Description: Set of tools to generate samples of order statistics from new families of distributions.
The main references for this package are: Gentle, J. (2009), Computational Statistics, Springer-Verlag
and Naradajah, S. and Rocha, R. (2016),<DOI:10.18637/jss.v069.i10>.
The families of distributions are: Marshall Olkin G distributions, exponentiated G distributions, beta G distributions, gamma G distributions, Kumaraswamy G distributions, generalized beta G distributions,
beta extended G distributions, gamma G distributions, gamma uniform G distributions, beta exponential G distributions, Weibull G distributions, log gamma G I distributions, log gamma G II distributions,
exponentiated generalized G distributions, exponentiated Kumaraswamy G distributions, geometric exponential Poisson G distributions, truncated-exponential skew-symmetric G distributions, modified beta G distributions,
and exponentiated exponential Poisson G distributions.
Author: Carlos Alberto Cardozo Delgado
Maintainer: Carlos Alberto Cardozo Delgado <cardozorpackages@gmail.com>
Diff between orders versions 0.1.0 dated 2019-02-18 and 0.1.1 dated 2019-02-25
DESCRIPTION | 12 ++++++------ MD5 | 32 ++++++++++++++++++-------------- NAMESPACE | 12 ++++++++++++ R/order_beg.R | 19 ++++++++++++++----- R/order_betaexpg.R | 21 +++++++++++++++------ R/order_betag.R | 23 ++++++++++++++++------- R/order_eepg.R | 25 +++++++++++++++++-------- R/order_eg.R | 21 +++++++++++++++------ R/order_expg.R | 19 ++++++++++++++----- R/order_expkumg.R |only R/order_gammag.R |only man/order_beg.Rd | 16 +++++++++++++--- man/order_betaexpg.Rd | 16 +++++++++++++--- man/order_betag.Rd | 18 ++++++++++++++---- man/order_eepg.Rd | 22 ++++++++++++++++------ man/order_eg.Rd | 18 ++++++++++++++---- man/order_expg.Rd | 16 +++++++++++++--- man/order_expkumg.Rd |only man/order_gammag.Rd |only 19 files changed, 210 insertions(+), 80 deletions(-)
Title: Compare Detrital Zircon Suites
Description: Compare detrital zircon suites by uploading univariate,
U-Pb age, or bivariate, U-Pb age and Lu-Hf data, in a 'shiny'-based
user-interface. Outputs publication quality figures using 'ggplot2', and
tables of statistics currently in use in the detrital zircon geochronology
community.
Author: Magnus Kristoffersen [aut, cre]
Maintainer: Magnus Kristoffersen <magnus.kristoffersen@geo.uio.no>
Diff between detzrcr versions 0.2.3 dated 2018-06-07 and 0.2.4 dated 2019-02-25
DESCRIPTION | 8 +-- MD5 | 14 +++--- NEWS.md | 4 + R/plotting.R | 6 -- build/vignette.rds |binary inst/doc/detzrcr-vignette.html | 78 +++++++++++++++++++++++++++++++++++--- inst/shiny-apps/detzrcr_app/app.R | 7 ++- man/plot_dens_hist.Rd | 3 - 8 files changed, 96 insertions(+), 24 deletions(-)
Title: Fixed Effects Nonlinear Maximum Likelihood Models
Description: Efficient estimation of maximum likelihood models with multiple fixed-effects. Standard-errors can easily and flexibly be clustered and estimations exported.
Author: Laurent Berge [aut, cre]
Maintainer: Laurent Berge <laurent.berge@uni.lu>
Diff between FENmlm versions 2.4 dated 2019-02-07 and 2.4.1 dated 2019-02-25
DESCRIPTION | 8 +- MD5 | 14 ++-- build/vignette.rds |binary inst/NEWS.Rd | 8 ++ inst/doc/FENmlm.R | 2 inst/doc/FENmlm.Rmd | 4 - inst/doc/FENmlm.html | 157 +++++++++++++++++++++++++++++++++------------------ vignettes/FENmlm.Rmd | 4 - 8 files changed, 127 insertions(+), 70 deletions(-)
Title: Produce Forest Plots to Visualize Covariate Effects
Description: Produce forest plots to visualize covariate effects using either
the command line or an interactive 'Shiny' application.
Author: Samer Mouksassi [aut, cre] (<https://orcid.org/0000-0002-7152-6654>),
Dean Attali [ctb]
Maintainer: Samer Mouksassi <samermouksassi@gmail.com>
Diff between coveffectsplot versions 0.0.2 dated 2019-01-07 and 0.0.3 dated 2019-02-25
coveffectsplot-0.0.2/coveffectsplot/inst/shiny/text/howto.html |only coveffectsplot-0.0.3/coveffectsplot/DESCRIPTION | 6 coveffectsplot-0.0.3/coveffectsplot/MD5 | 25 coveffectsplot-0.0.3/coveffectsplot/NEWS.md | 12 coveffectsplot-0.0.3/coveffectsplot/R/forest_plot.R | 99 coveffectsplot-0.0.3/coveffectsplot/README.md | 10 coveffectsplot-0.0.3/coveffectsplot/inst/doc/introduction_to_coveffectsplot.R | 50 coveffectsplot-0.0.3/coveffectsplot/inst/doc/introduction_to_coveffectsplot.Rmd | 56 coveffectsplot-0.0.3/coveffectsplot/inst/doc/introduction_to_coveffectsplot.html | 2564 +--------- coveffectsplot-0.0.3/coveffectsplot/inst/shiny/img/prezista.png |binary coveffectsplot-0.0.3/coveffectsplot/inst/shiny/server.R | 1 coveffectsplot-0.0.3/coveffectsplot/inst/shiny/ui.R | 13 coveffectsplot-0.0.3/coveffectsplot/man/forest_plot.Rd | 33 coveffectsplot-0.0.3/coveffectsplot/vignettes/introduction_to_coveffectsplot.Rmd | 56 14 files changed, 587 insertions(+), 2338 deletions(-)
More information about coveffectsplot at CRAN
Permanent link
Title: Estimation in Adaptive Group Sequential Trials
Description: Calculation of repeated confidence intervals as well as confidence
intervals based on the stage-wise ordering in group sequential designs and
adaptive group sequential designs. For adaptive group sequential designs
the confidence intervals are based on the conditional rejection probability
principle. Currently the procedures do not support the use of futility
boundaries or more than one adaptive interim analysis.
Author: Niklas Hack [aut, cre], Werner Brannath [aut], Matthias Brueckner [aut]
Maintainer: Matthias Brueckner <matthias.brueckner@posteo.de>
Diff between AGSDest versions 2.3.1 dated 2016-06-17 and 2.3.2 dated 2019-02-25
DESCRIPTION | 11 ++++++----- MD5 | 14 +++++++------- NAMESPACE | 3 ++- R/GSTobj.R | 6 +++--- R/seqmon.R | 2 +- build/vignette.rds |binary inst/doc/vignette.pdf |binary src/asoCbound.c | 13 +++++++++++++ 8 files changed, 32 insertions(+), 17 deletions(-)
Title: R Interface to Apache Spark
Description: R interface to Apache Spark, a fast and general engine for big data
processing, see <http://spark.apache.org>. This package supports connecting to
local and remote Apache Spark clusters, provides a 'dplyr' compatible back-end,
and provides an interface to Spark's built-in machine learning algorithms.
Author: Javier Luraschi [aut, cre],
Kevin Kuo [aut] (<https://orcid.org/0000-0001-7803-7901>),
Kevin Ushey [aut],
JJ Allaire [aut],
Samuel Macedo [ctb],
RStudio [cph],
The Apache Software Foundation [aut, cph]
Maintainer: Javier Luraschi <javier@rstudio.com>
Diff between sparklyr versions 0.9.4 dated 2019-01-09 and 1.0.0 dated 2019-02-25
sparklyr-0.9.4/sparklyr/R/ml_predictor.R |only sparklyr-0.9.4/sparklyr/R/spark_debug_backend.R |only sparklyr-0.9.4/sparklyr/R/sysdata.rda |only sparklyr-0.9.4/sparklyr/inst/java/sparklyr-2.1-2.11.jar |only sparklyr-0.9.4/sparklyr/inst/java/sparklyr-2.2-2.11.jar |only sparklyr-0.9.4/sparklyr/java/spark-1.6.0/workerutils.scala |only sparklyr-0.9.4/sparklyr/man/sdf_mutate.Rd |only sparklyr-0.9.4/sparklyr/tests/testthat/output/print/decision-tree.txt |only sparklyr-0.9.4/sparklyr/tests/testthat/output/print/decision_tree_classifier.txt |only sparklyr-0.9.4/sparklyr/tests/testthat/test-ensure.R |only sparklyr-0.9.4/sparklyr/tests/testthat/test-ml-backwards-compat.R |only sparklyr-0.9.4/sparklyr/tests/testthat/test-ml-feature-backwards-compat.R |only sparklyr-0.9.4/sparklyr/tests/testthat/test-shinyapp.R |only sparklyr-1.0.0/sparklyr/DESCRIPTION | 21 sparklyr-1.0.0/sparklyr/MD5 | 651 +++++----- sparklyr-1.0.0/sparklyr/NAMESPACE | 69 - sparklyr-1.0.0/sparklyr/NEWS.md | 129 + sparklyr-1.0.0/sparklyr/R/arrow_data.R |only sparklyr-1.0.0/sparklyr/R/config_settings.R | 18 sparklyr-1.0.0/sparklyr/R/connection_progress.R | 7 sparklyr-1.0.0/sparklyr/R/connection_shinyapp.R | 482 ------- sparklyr-1.0.0/sparklyr/R/connection_spark.R | 46 sparklyr-1.0.0/sparklyr/R/connection_viewer.R | 27 sparklyr-1.0.0/sparklyr/R/core_arrow.R |only sparklyr-1.0.0/sparklyr/R/core_config.R | 4 sparklyr-1.0.0/sparklyr/R/core_deserialize.R | 6 sparklyr-1.0.0/sparklyr/R/core_invoke.R | 3 sparklyr-1.0.0/sparklyr/R/core_serialize.R | 4 sparklyr-1.0.0/sparklyr/R/core_worker_config.R | 4 sparklyr-1.0.0/sparklyr/R/data_copy.R | 124 + sparklyr-1.0.0/sparklyr/R/data_interface.R | 91 - sparklyr-1.0.0/sparklyr/R/databricks_connection.R | 49 sparklyr-1.0.0/sparklyr/R/dbi_spark_connection.R | 9 sparklyr-1.0.0/sparklyr/R/dbi_spark_result.R | 5 sparklyr-1.0.0/sparklyr/R/dbi_spark_table.R | 8 sparklyr-1.0.0/sparklyr/R/dplyr_spark_connection.R | 2 sparklyr-1.0.0/sparklyr/R/dplyr_spark_table.R | 8 sparklyr-1.0.0/sparklyr/R/dplyr_sql.R | 14 sparklyr-1.0.0/sparklyr/R/imports.R | 16 sparklyr-1.0.0/sparklyr/R/install_spark.R | 25 sparklyr-1.0.0/sparklyr/R/install_spark_versions.R | 15 sparklyr-1.0.0/sparklyr/R/java.R |only sparklyr-1.0.0/sparklyr/R/livy_connection.R | 140 +- sparklyr-1.0.0/sparklyr/R/livy_install.R | 4 sparklyr-1.0.0/sparklyr/R/livy_sources.R | 7 sparklyr-1.0.0/sparklyr/R/ml_classification_decision_tree_classifier.R | 45 sparklyr-1.0.0/sparklyr/R/ml_classification_gbt_classifier.R | 112 + sparklyr-1.0.0/sparklyr/R/ml_classification_linear_svc.R | 61 sparklyr-1.0.0/sparklyr/R/ml_classification_logistic_regression.R | 112 - sparklyr-1.0.0/sparklyr/R/ml_classification_multilayer_perceptron_classifier.R | 101 + sparklyr-1.0.0/sparklyr/R/ml_classification_naive_bayes.R | 47 sparklyr-1.0.0/sparklyr/R/ml_classification_one_vs_rest.R | 36 sparklyr-1.0.0/sparklyr/R/ml_classification_random_forest_classifier.R | 53 sparklyr-1.0.0/sparklyr/R/ml_clustering_bisecting_kmeans.R | 33 sparklyr-1.0.0/sparklyr/R/ml_clustering_gaussian_mixture.R | 28 sparklyr-1.0.0/sparklyr/R/ml_clustering_kmeans.R | 43 sparklyr-1.0.0/sparklyr/R/ml_clustering_lda.R | 84 - sparklyr-1.0.0/sparklyr/R/ml_constructor_utils.R | 51 sparklyr-1.0.0/sparklyr/R/ml_evaluation_clustering.R | 12 sparklyr-1.0.0/sparklyr/R/ml_evaluation_prediction.R | 44 sparklyr-1.0.0/sparklyr/R/ml_evaluator.R | 4 sparklyr-1.0.0/sparklyr/R/ml_feature_binarizer.R | 11 sparklyr-1.0.0/sparklyr/R/ml_feature_bucketed_random_projection_lsh.R | 28 sparklyr-1.0.0/sparklyr/R/ml_feature_bucketizer.R | 20 sparklyr-1.0.0/sparklyr/R/ml_feature_chisq_selector.R | 39 sparklyr-1.0.0/sparklyr/R/ml_feature_count_vectorizer.R | 37 sparklyr-1.0.0/sparklyr/R/ml_feature_dct.R | 12 sparklyr-1.0.0/sparklyr/R/ml_feature_elementwise_product.R | 11 sparklyr-1.0.0/sparklyr/R/ml_feature_feature_hasher.R | 13 sparklyr-1.0.0/sparklyr/R/ml_feature_hashing_tf.R | 13 sparklyr-1.0.0/sparklyr/R/ml_feature_idf.R | 28 sparklyr-1.0.0/sparklyr/R/ml_feature_imputer.R | 30 sparklyr-1.0.0/sparklyr/R/ml_feature_index_to_string.R | 13 sparklyr-1.0.0/sparklyr/R/ml_feature_interaction.R | 15 sparklyr-1.0.0/sparklyr/R/ml_feature_max_abs_scaler.R | 29 sparklyr-1.0.0/sparklyr/R/ml_feature_min_max_scaler.R | 30 sparklyr-1.0.0/sparklyr/R/ml_feature_minhash_lsh.R | 30 sparklyr-1.0.0/sparklyr/R/ml_feature_ngram.R | 11 sparklyr-1.0.0/sparklyr/R/ml_feature_normalizer.R | 11 sparklyr-1.0.0/sparklyr/R/ml_feature_one_hot_encoder.R | 14 sparklyr-1.0.0/sparklyr/R/ml_feature_pca.R | 66 - sparklyr-1.0.0/sparklyr/R/ml_feature_polynomial_expansion.R | 15 sparklyr-1.0.0/sparklyr/R/ml_feature_quantile_discretizer.R | 40 sparklyr-1.0.0/sparklyr/R/ml_feature_r_formula.R | 38 sparklyr-1.0.0/sparklyr/R/ml_feature_regex_tokenizer.R | 11 sparklyr-1.0.0/sparklyr/R/ml_feature_sql_transformer.R | 14 sparklyr-1.0.0/sparklyr/R/ml_feature_standard_scaler.R | 33 sparklyr-1.0.0/sparklyr/R/ml_feature_stop_words_remover.R | 11 sparklyr-1.0.0/sparklyr/R/ml_feature_string_indexer.R | 34 sparklyr-1.0.0/sparklyr/R/ml_feature_string_indexer_model.R | 11 sparklyr-1.0.0/sparklyr/R/ml_feature_tokenizer.R | 11 sparklyr-1.0.0/sparklyr/R/ml_feature_vector_assembler.R | 17 sparklyr-1.0.0/sparklyr/R/ml_feature_vector_indexer.R | 28 sparklyr-1.0.0/sparklyr/R/ml_feature_vector_slicer.R | 13 sparklyr-1.0.0/sparklyr/R/ml_feature_word2vec.R | 30 sparklyr-1.0.0/sparklyr/R/ml_fpm_fpgrowth.R | 9 sparklyr-1.0.0/sparklyr/R/ml_helpers.R | 2 sparklyr-1.0.0/sparklyr/R/ml_mapping_tables.R | 350 +---- sparklyr-1.0.0/sparklyr/R/ml_model_aft_survival_regression.R | 25 sparklyr-1.0.0/sparklyr/R/ml_model_als.R |only sparklyr-1.0.0/sparklyr/R/ml_model_bisecting_kmeans.R | 38 sparklyr-1.0.0/sparklyr/R/ml_model_constructors.R | 200 ++- sparklyr-1.0.0/sparklyr/R/ml_model_decision_tree.R | 80 - sparklyr-1.0.0/sparklyr/R/ml_model_gaussian_mixture.R | 28 sparklyr-1.0.0/sparklyr/R/ml_model_generalized_linear_regression.R | 27 sparklyr-1.0.0/sparklyr/R/ml_model_gradient_boosted_trees.R | 108 + sparklyr-1.0.0/sparklyr/R/ml_model_helpers.R |only sparklyr-1.0.0/sparklyr/R/ml_model_isotonic_regression.R | 11 sparklyr-1.0.0/sparklyr/R/ml_model_kmeans.R | 38 sparklyr-1.0.0/sparklyr/R/ml_model_lda.R |only sparklyr-1.0.0/sparklyr/R/ml_model_linear_regression.R | 28 sparklyr-1.0.0/sparklyr/R/ml_model_linear_svc.R | 29 sparklyr-1.0.0/sparklyr/R/ml_model_logistic_regression.R | 43 sparklyr-1.0.0/sparklyr/R/ml_model_naive_bayes.R | 31 sparklyr-1.0.0/sparklyr/R/ml_model_one_vs_rest.R | 18 sparklyr-1.0.0/sparklyr/R/ml_model_random_forest.R | 136 +- sparklyr-1.0.0/sparklyr/R/ml_model_utils.R | 84 - sparklyr-1.0.0/sparklyr/R/ml_param_utils.R | 34 sparklyr-1.0.0/sparklyr/R/ml_persistence.R | 2 sparklyr-1.0.0/sparklyr/R/ml_pipeline.R | 12 sparklyr-1.0.0/sparklyr/R/ml_pipeline_utils.R | 129 + sparklyr-1.0.0/sparklyr/R/ml_print_utils.R | 3 sparklyr-1.0.0/sparklyr/R/ml_recommendation_als.R | 80 - sparklyr-1.0.0/sparklyr/R/ml_regression_aft_survival_regression.R | 44 sparklyr-1.0.0/sparklyr/R/ml_regression_decision_tree_regressor.R | 39 sparklyr-1.0.0/sparklyr/R/ml_regression_gbt_regressor.R | 43 sparklyr-1.0.0/sparklyr/R/ml_regression_generalized_linear_regression.R | 73 - sparklyr-1.0.0/sparklyr/R/ml_regression_isotonic_regression.R | 34 sparklyr-1.0.0/sparklyr/R/ml_regression_linear_regression.R | 67 - sparklyr-1.0.0/sparklyr/R/ml_regression_random_forest_regressor.R | 41 sparklyr-1.0.0/sparklyr/R/ml_summary.R | 8 sparklyr-1.0.0/sparklyr/R/ml_transformation_methods.R | 34 sparklyr-1.0.0/sparklyr/R/ml_transformer_and_estimator.R | 97 + sparklyr-1.0.0/sparklyr/R/ml_tuning.R | 52 sparklyr-1.0.0/sparklyr/R/ml_tuning_cross_validator.R | 24 sparklyr-1.0.0/sparklyr/R/ml_tuning_train_validation_split.R | 24 sparklyr-1.0.0/sparklyr/R/ml_utils.R | 6 sparklyr-1.0.0/sparklyr/R/ml_validator_utils.R | 83 - sparklyr-1.0.0/sparklyr/R/new_model_multilayer_perceptron.R | 17 sparklyr-1.0.0/sparklyr/R/precondition.R | 79 - sparklyr-1.0.0/sparklyr/R/reexports.R | 19 sparklyr-1.0.0/sparklyr/R/sdf_interface.R | 110 - sparklyr-1.0.0/sparklyr/R/sdf_sequence.R | 26 sparklyr-1.0.0/sparklyr/R/sdf_wrapper.R | 82 - sparklyr-1.0.0/sparklyr/R/shell_connection.R | 33 sparklyr-1.0.0/sparklyr/R/spark_apply.R | 69 - sparklyr-1.0.0/sparklyr/R/spark_compile.R | 16 sparklyr-1.0.0/sparklyr/R/spark_connection.R | 22 sparklyr-1.0.0/sparklyr/R/spark_extensions.R | 80 - sparklyr-1.0.0/sparklyr/R/spark_invoke.R | 7 sparklyr-1.0.0/sparklyr/R/spark_submit.R | 3 sparklyr-1.0.0/sparklyr/R/spark_utils.R | 2 sparklyr-1.0.0/sparklyr/R/spark_version.R | 11 sparklyr-1.0.0/sparklyr/R/stream_operations.R | 3 sparklyr-1.0.0/sparklyr/R/stream_shiny.R | 13 sparklyr-1.0.0/sparklyr/R/stream_view.R | 10 sparklyr-1.0.0/sparklyr/R/tables_spark.R | 16 sparklyr-1.0.0/sparklyr/R/test_connection.R | 2 sparklyr-1.0.0/sparklyr/R/tidiers_ml_als.R |only sparklyr-1.0.0/sparklyr/R/tidiers_ml_lda.R |only sparklyr-1.0.0/sparklyr/R/tidiers_ml_linear_models.R | 13 sparklyr-1.0.0/sparklyr/R/tidiers_ml_multilayer_perceptron.R |only sparklyr-1.0.0/sparklyr/R/tidiers_ml_naive_bayes.R | 2 sparklyr-1.0.0/sparklyr/R/tidiers_ml_svc_models.R |only sparklyr-1.0.0/sparklyr/R/tidiers_ml_unsupervised_models.R | 12 sparklyr-1.0.0/sparklyr/R/tidiers_pca.R |only sparklyr-1.0.0/sparklyr/R/tidiers_utils.R | 60 sparklyr-1.0.0/sparklyr/R/utils.R | 114 - sparklyr-1.0.0/sparklyr/R/worker_apply.R | 256 +++ sparklyr-1.0.0/sparklyr/R/worker_main.R | 7 sparklyr-1.0.0/sparklyr/R/yarn_cluster.R | 27 sparklyr-1.0.0/sparklyr/R/yarn_config.R |only sparklyr-1.0.0/sparklyr/R/yarn_ui.R |only sparklyr-1.0.0/sparklyr/README.md | 140 +- sparklyr-1.0.0/sparklyr/inst/extdata/versions.json | 12 sparklyr-1.0.0/sparklyr/inst/icons/yarn-ui.png |only sparklyr-1.0.0/sparklyr/inst/java/sparklyr-1.5-2.10.jar |binary sparklyr-1.0.0/sparklyr/inst/java/sparklyr-1.6-2.10.jar |binary sparklyr-1.0.0/sparklyr/inst/java/sparklyr-2.0-2.11.jar |binary sparklyr-1.0.0/sparklyr/inst/java/sparklyr-2.3-2.11.jar |binary sparklyr-1.0.0/sparklyr/inst/livy/spark-1.5.2/serializer.scala | 9 sparklyr-1.0.0/sparklyr/inst/livy/spark-1.5.2/sqlutils.scala | 1 sparklyr-1.0.0/sparklyr/inst/livy/spark-1.5.2/stream.scala | 9 sparklyr-1.0.0/sparklyr/inst/livy/spark-1.5.2/utils.scala | 45 sparklyr-1.0.0/sparklyr/inst/livy/spark-1.6.0/livyutils.scala | 6 sparklyr-1.0.0/sparklyr/inst/livy/spark-1.6.0/sources.scala | 329 ++++- sparklyr-1.0.0/sparklyr/inst/livy/spark-1.6.0/workerapply.scala | 15 sparklyr-1.0.0/sparklyr/inst/livy/spark-1.6.0/workercontext.scala | 35 sparklyr-1.0.0/sparklyr/inst/livy/spark-1.6.0/workerhelper.scala | 52 sparklyr-1.0.0/sparklyr/inst/livy/spark-1.6.0/workerrdd.scala | 4 sparklyr-1.0.0/sparklyr/inst/livy/spark-2.0.0/livyutils.scala | 6 sparklyr-1.0.0/sparklyr/inst/livy/spark-2.0.0/workerhelper.scala |only sparklyr-1.0.0/sparklyr/inst/livy/spark-2.3.0/applyutils.scala |only sparklyr-1.0.0/sparklyr/inst/livy/spark-2.3.0/arrowbatchstreamwriter.scala |only sparklyr-1.0.0/sparklyr/inst/livy/spark-2.3.0/arrowconverters.scala |only sparklyr-1.0.0/sparklyr/inst/livy/spark-2.3.0/arrowhelper.scala |only sparklyr-1.0.0/sparklyr/inst/livy/spark-2.3.0/livyutils.scala | 8 sparklyr-1.0.0/sparklyr/inst/livy/spark-2.3.0/workercontext.scala |only sparklyr-1.0.0/sparklyr/inst/rstudio/connections/Livy.R | 3 sparklyr-1.0.0/sparklyr/inst/rstudio/shinycon |only sparklyr-1.0.0/sparklyr/inst/sparkml |only sparklyr-1.0.0/sparklyr/java/spark-1.5.2/serializer.scala | 9 sparklyr-1.0.0/sparklyr/java/spark-1.5.2/sqlutils.scala | 1 sparklyr-1.0.0/sparklyr/java/spark-1.5.2/stream.scala | 9 sparklyr-1.0.0/sparklyr/java/spark-1.5.2/utils.scala | 45 sparklyr-1.0.0/sparklyr/java/spark-1.6.0/livyutils.scala |only sparklyr-1.0.0/sparklyr/java/spark-1.6.0/sources.scala | 329 ++++- sparklyr-1.0.0/sparklyr/java/spark-1.6.0/workerapply.scala | 15 sparklyr-1.0.0/sparklyr/java/spark-1.6.0/workercontext.scala | 35 sparklyr-1.0.0/sparklyr/java/spark-1.6.0/workerhelper.scala | 52 sparklyr-1.0.0/sparklyr/java/spark-1.6.0/workerrdd.scala | 4 sparklyr-1.0.0/sparklyr/java/spark-2.0.0/livyutils.scala |only sparklyr-1.0.0/sparklyr/java/spark-2.0.0/workerhelper.scala |only sparklyr-1.0.0/sparklyr/java/spark-2.3.0/applyutils.scala |only sparklyr-1.0.0/sparklyr/java/spark-2.3.0/arrowbatchstreamwriter.scala |only sparklyr-1.0.0/sparklyr/java/spark-2.3.0/arrowconverters.scala |only sparklyr-1.0.0/sparklyr/java/spark-2.3.0/arrowhelper.scala |only sparklyr-1.0.0/sparklyr/java/spark-2.3.0/livyutils.scala |only sparklyr-1.0.0/sparklyr/java/spark-2.3.0/workercontext.scala |only sparklyr-1.0.0/sparklyr/man/collect.Rd |only sparklyr-1.0.0/sparklyr/man/copy_to.Rd |only sparklyr-1.0.0/sparklyr/man/ensure.Rd | 17 sparklyr-1.0.0/sparklyr/man/ft_chisq_selector.Rd | 17 sparklyr-1.0.0/sparklyr/man/ft_count_vectorizer.Rd | 17 sparklyr-1.0.0/sparklyr/man/ft_idf.Rd | 17 sparklyr-1.0.0/sparklyr/man/ft_imputer.Rd | 17 sparklyr-1.0.0/sparklyr/man/ft_lsh.Rd | 21 sparklyr-1.0.0/sparklyr/man/ft_max_abs_scaler.Rd | 17 sparklyr-1.0.0/sparklyr/man/ft_min_max_scaler.Rd | 18 sparklyr-1.0.0/sparklyr/man/ft_pca.Rd | 17 sparklyr-1.0.0/sparklyr/man/ft_quantile_discretizer.Rd | 19 sparklyr-1.0.0/sparklyr/man/ft_r_formula.Rd | 17 sparklyr-1.0.0/sparklyr/man/ft_standard_scaler.Rd | 17 sparklyr-1.0.0/sparklyr/man/ft_string_indexer.Rd | 17 sparklyr-1.0.0/sparklyr/man/ft_vector_indexer.Rd | 18 sparklyr-1.0.0/sparklyr/man/ft_word2vec.Rd | 17 sparklyr-1.0.0/sparklyr/man/jobj_set_param.Rd |only sparklyr-1.0.0/sparklyr/man/livy_config.Rd | 4 sparklyr-1.0.0/sparklyr/man/ml-constructors.Rd |only sparklyr-1.0.0/sparklyr/man/ml-model-constructors.Rd |only sparklyr-1.0.0/sparklyr/man/ml_add_stage.Rd |only sparklyr-1.0.0/sparklyr/man/ml_aft_survival_regression.Rd | 2 sparklyr-1.0.0/sparklyr/man/ml_als.Rd | 20 sparklyr-1.0.0/sparklyr/man/ml_als_tidiers.Rd |only sparklyr-1.0.0/sparklyr/man/ml_call_constructor.Rd |only sparklyr-1.0.0/sparklyr/man/ml_clustering_evaluator.Rd | 6 sparklyr-1.0.0/sparklyr/man/ml_decision_tree.Rd | 4 sparklyr-1.0.0/sparklyr/man/ml_evaluator.Rd | 6 sparklyr-1.0.0/sparklyr/man/ml_generalized_linear_regression.Rd | 4 sparklyr-1.0.0/sparklyr/man/ml_gradient_boosted_trees.Rd | 4 sparklyr-1.0.0/sparklyr/man/ml_isotonic_regression.Rd | 4 sparklyr-1.0.0/sparklyr/man/ml_lda.Rd | 44 sparklyr-1.0.0/sparklyr/man/ml_lda_tidiers.Rd |only sparklyr-1.0.0/sparklyr/man/ml_linear_regression.Rd | 4 sparklyr-1.0.0/sparklyr/man/ml_linear_svc.Rd | 24 sparklyr-1.0.0/sparklyr/man/ml_linear_svc_tidiers.Rd |only sparklyr-1.0.0/sparklyr/man/ml_logistic_regression.Rd | 4 sparklyr-1.0.0/sparklyr/man/ml_multilayer_perceptron_classifier.Rd | 20 sparklyr-1.0.0/sparklyr/man/ml_multilayer_perceptron_tidiers.Rd |only sparklyr-1.0.0/sparklyr/man/ml_naive_bayes.Rd | 4 sparklyr-1.0.0/sparklyr/man/ml_one_vs_rest.Rd | 2 sparklyr-1.0.0/sparklyr/man/ml_pca_tidiers.Rd |only sparklyr-1.0.0/sparklyr/man/ml_random_forest.Rd | 4 sparklyr-1.0.0/sparklyr/man/ml_standardize_formula.Rd |only sparklyr-1.0.0/sparklyr/man/reactiveSpark.Rd | 3 sparklyr-1.0.0/sparklyr/man/reexports.Rd | 2 sparklyr-1.0.0/sparklyr/man/sdf-transform-methods.Rd | 2 sparklyr-1.0.0/sparklyr/man/sdf_along.Rd | 5 sparklyr-1.0.0/sparklyr/man/sdf_len.Rd | 5 sparklyr-1.0.0/sparklyr/man/sdf_seq.Rd | 5 sparklyr-1.0.0/sparklyr/man/spark-connections.Rd | 15 sparklyr-1.0.0/sparklyr/man/spark_apply.Rd | 5 sparklyr-1.0.0/sparklyr/man/spark_dependency.Rd | 13 sparklyr-1.0.0/sparklyr/man/spark_dependency_fallback.Rd |only sparklyr-1.0.0/sparklyr/man/spark_get_java.Rd |only sparklyr-1.0.0/sparklyr/man/spark_install.Rd | 4 sparklyr-1.0.0/sparklyr/man/spark_pipeline_stage.Rd |only sparklyr-1.0.0/sparklyr/man/spark_read_csv.Rd | 10 sparklyr-1.0.0/sparklyr/man/spark_read_json.Rd | 5 sparklyr-1.0.0/sparklyr/man/spark_read_libsvm.Rd | 4 sparklyr-1.0.0/sparklyr/man/spark_read_orc.Rd | 6 sparklyr-1.0.0/sparklyr/man/spark_read_parquet.Rd | 6 sparklyr-1.0.0/sparklyr/man/spark_read_source.Rd | 8 sparklyr-1.0.0/sparklyr/man/spark_read_text.Rd | 9 sparklyr-1.0.0/sparklyr/tests/testthat.R | 139 ++ sparklyr-1.0.0/sparklyr/tests/testthat/data/yarn-site.xml | 22 sparklyr-1.0.0/sparklyr/tests/testthat/helper-initialize.R | 43 sparklyr-1.0.0/sparklyr/tests/testthat/output/print/decision-tree-new.txt |only sparklyr-1.0.0/sparklyr/tests/testthat/output/print/decision-tree-old.txt |only sparklyr-1.0.0/sparklyr/tests/testthat/test-binds.R | 3 sparklyr-1.0.0/sparklyr/tests/testthat/test-broom-als.R |only sparklyr-1.0.0/sparklyr/tests/testthat/test-broom-gaussian_mixture.R | 9 sparklyr-1.0.0/sparklyr/tests/testthat/test-broom-gradient_boosted_trees.R | 6 sparklyr-1.0.0/sparklyr/tests/testthat/test-broom-kmeans.R | 9 sparklyr-1.0.0/sparklyr/tests/testthat/test-broom-lda.R |only 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Title: Compact and Flexible Summaries of Data
Description: A simple to use summary function that can be used with pipes
and displays nicely in the console. The default summary statistics may be
modified by the user as can the default formatting. Support for data frames
and vectors is included, and users can implement their own skim methods for
specific object types as described in a vignette. Default summaries include
support for inline spark graphs. Instructions for managing these on
specific operating systems are given in the "Using skimr" vignette and the
README.
Author: Amelia McNamara [aut],
Eduardo Arino de la Rubia [aut],
Hao Zhu [aut],
Julia Lowndes [ctb],
Shannon Ellis [aut],
Elin Waring [cre],
Michael Quinn [aut],
Hope McLeod [ctb],
Hadley Wickham [ctb],
Kirill Müller [ctb],
RStudio, Inc. [cph] (Spark functions),
Connor Kirkpatrick [ctb],
Scott Brenstuhl [ctb],
Patrick Schratz [ctb],
lbusett [ctb],
Mikko Korpela [ctb],
Jennifer Thompson [ctb],
Harris McGehee [ctb],
Patrick Kennedy [ctb]
Maintainer: Elin Waring <elin.waring@gmail.com>
Diff between skimr versions 1.0.4 dated 2019-01-13 and 1.0.5 dated 2019-02-25
DESCRIPTION | 16 +-- MD5 | 44 ++++---- NAMESPACE | 16 ++- NEWS.md | 16 ++- R/functions.R | 6 - R/skimr-package.R | 16 +++ R/stats.R | 4 README.md | 47 ++++----- build/vignette.rds |binary inst/doc/Skimr_defaults.Rmd | 2 inst/doc/Skimr_defaults.html | 115 ++++++++++++++--------- inst/doc/Supporting_additional_objects.html | 28 +++++ inst/doc/Using_skimr.Rmd | 2 inst/doc/Using_skimr.html | 137 +++++++++++++++------------- man/arrange.skim_df.Rd | 2 man/filter.skim_df.Rd | 2 man/mutate.skim_df.Rd | 2 man/reexports.Rd | 7 + man/select.skim_df.Rd | 2 man/slice.skim_df.Rd | 2 tests/testthat/test-stats.R | 16 +++ vignettes/Skimr_defaults.Rmd | 2 vignettes/Using_skimr.Rmd | 2 23 files changed, 305 insertions(+), 181 deletions(-)
Title: 'rquery' for 'data.table'
Description: Implements the 'rquery' piped Codd-style query algebra using 'data.table'. This allows
for a high-speed in memory implementation of Codd-style data manipulation tools.
Author: John Mount [aut, cre],
Win-Vector LLC [cph]
Maintainer: John Mount <jmount@win-vector.com>
Diff between rqdatatable versions 1.1.3 dated 2019-02-17 and 1.1.4 dated 2019-02-25
DESCRIPTION | 10 +++--- MD5 | 14 ++++----- NEWS.md | 4 ++ R/ex_relop_list.R | 1 R/relop_table_source.R | 8 ++--- R/run_rqdatatable_tests.R | 62 ++++++------------------------------------ inst/doc/GroupedSampling.html | 4 +- inst/doc/logisticexample.html | 4 +- 8 files changed, 35 insertions(+), 72 deletions(-)