Title: Causal Effects from Observational Studies with Clustered
Interference
Description: Estimating causal effects from observational studies assuming
clustered (or partial) interference. These inverse probability-weighted
estimators target new estimands arising from population-level treatment
policies. The estimands and estimators are introduced in Barkley et al.
(2017) <arXiv:1711.04834>.
Author: Brian G. Barkley [aut, cre] (<https://orcid.org/0000-0003-1787-4735>),
Bradley Saul [ctb]
Maintainer: Brian G. Barkley <BarkleyBG@outlook.com>
Diff between clusteredinterference versions 1.0.0 dated 2018-02-13 and 1.0.1 dated 2019-03-17
clusteredinterference-1.0.0/clusteredinterference/README.md |only clusteredinterference-1.0.1/clusteredinterference/DESCRIPTION | 10 clusteredinterference-1.0.1/clusteredinterference/MD5 | 83 clusteredinterference-1.0.1/clusteredinterference/NAMESPACE | 12 clusteredinterference-1.0.1/clusteredinterference/NEWS.md | 14 clusteredinterference-1.0.1/clusteredinterference/R/EstFun_builders.R | 950 ++++---- clusteredinterference-1.0.1/clusteredinterference/R/EstFuns.R | 508 ++-- clusteredinterference-1.0.1/clusteredinterference/R/Estimator.R | 552 ++-- clusteredinterference-1.0.1/clusteredinterference/R/calculateBreadMeat.R | 188 - clusteredinterference-1.0.1/clusteredinterference/R/calculateBreadMeat_helpers.R | 880 +++---- clusteredinterference-1.0.1/clusteredinterference/R/clusteredinterference.R | 36 clusteredinterference-1.0.1/clusteredinterference/R/data.R | 28 clusteredinterference-1.0.1/clusteredinterference/R/estimateNuisance.R | 1114 +++++----- clusteredinterference-1.0.1/clusteredinterference/R/estimateTargets.R | 272 +- clusteredinterference-1.0.1/clusteredinterference/R/estimateVariance.R | 478 ++-- clusteredinterference-1.0.1/clusteredinterference/R/makeTargetGrid.R | 112 - clusteredinterference-1.0.1/clusteredinterference/R/s3methods.R | 196 - clusteredinterference-1.0.1/clusteredinterference/R/sampleVecs4Trt.R | 386 +-- clusteredinterference-1.0.1/clusteredinterference/R/utilities.R | 170 - clusteredinterference-1.0.1/clusteredinterference/R/utilities_estimator.R | 302 +- clusteredinterference-1.0.1/clusteredinterference/R/utilities_formula.R | 242 +- clusteredinterference-1.0.1/clusteredinterference/build/vignette.rds |binary clusteredinterference-1.0.1/clusteredinterference/inst/doc/estimate-policyFX.R | 131 - clusteredinterference-1.0.1/clusteredinterference/inst/doc/estimate-policyFX.Rmd | 313 +- clusteredinterference-1.0.1/clusteredinterference/inst/doc/estimate-policyFX.html | 715 ++---- clusteredinterference-1.0.1/clusteredinterference/man/clusteredinterference.Rd | 38 clusteredinterference-1.0.1/clusteredinterference/man/makeTargetGrid.Rd | 34 clusteredinterference-1.0.1/clusteredinterference/man/policyFX.Rd | 274 +- clusteredinterference-1.0.1/clusteredinterference/man/print.policyFX.Rd | 32 clusteredinterference-1.0.1/clusteredinterference/man/summary.policyFX.Rd | 38 clusteredinterference-1.0.1/clusteredinterference/man/toy_data.Rd | 44 clusteredinterference-1.0.1/clusteredinterference/tests/testthat.R | 8 clusteredinterference-1.0.1/clusteredinterference/tests/testthat/helper.R | 16 clusteredinterference-1.0.1/clusteredinterference/tests/testthat/historical_data/test_summary.Rds |only clusteredinterference-1.0.1/clusteredinterference/tests/testthat/test_CFBI.R | 47 clusteredinterference-1.0.1/clusteredinterference/tests/testthat/test_CFBI_MCFP.R | 39 clusteredinterference-1.0.1/clusteredinterference/tests/testthat/test_CFBI_starting.R | 49 clusteredinterference-1.0.1/clusteredinterference/tests/testthat/test_integration.R | 263 +- clusteredinterference-1.0.1/clusteredinterference/tests/testthat/test_s3_methods.R |only clusteredinterference-1.0.1/clusteredinterference/tests/testthat/test_sampleVecs4Trt.R | 41 clusteredinterference-1.0.1/clusteredinterference/tests/testthat/test_tidy_output.R | 80 clusteredinterference-1.0.1/clusteredinterference/tests/testthat/test_variance_nuisance.R | 37 clusteredinterference-1.0.1/clusteredinterference/tests/testthat/test_variance_target.R | 75 clusteredinterference-1.0.1/clusteredinterference/vignettes/estimate-policyFX.Rmd | 313 +- 44 files changed, 4462 insertions(+), 4658 deletions(-)
More information about clusteredinterference at CRAN
Permanent link
Title: Easy Use of 'GADM' Maps
Description: Manipulate, assemble, export <http://www.gadm.org> maps. Create 'choropleth', 'isopleth', dots plot, proportional dots and more.
Author: Jean Pierre Decorps [aut, cre],
Morgane Vallee [ctb]
Maintainer: Jean Pierre Decorps <jp.decorps@epiconcept.fr>
Diff between GADMTools versions 3.5-1 dated 2019-02-03 and 3.6-1 dated 2019-03-17
GADMTools-3.5-1/GADMTools/R/01_GADMTools.R |only GADMTools-3.5-1/GADMTools/R/02_stripSP.R |only GADMTools-3.5-1/GADMTools/R/04_classDots.R |only GADMTools-3.5-1/GADMTools/R/05_choropleth.R |only GADMTools-3.5-1/GADMTools/R/06_json.choropleth.R |only GADMTools-3.5-1/GADMTools/R/07_fast.choropleth.R |only GADMTools-3.5-1/GADMTools/R/08_computeBreaks.R |only GADMTools-3.5-1/GADMTools/R/09_dots.R |only GADMTools-3.5-1/GADMTools/R/11_propDots.R |only GADMTools-3.5-1/GADMTools/R/12_isopleth.R |only GADMTools-3.5-1/GADMTools/R/20_GT2_Core.R |only GADMTools-3.5-1/GADMTools/R/21_gt2.getBackground.R |only GADMTools-3.5-1/GADMTools/R/30_gt2.choropleth.R |only GADMTools-3.5-1/GADMTools/R/31_gt2.dots.R |only GADMTools-3.5-1/GADMTools/R/32_gt2.isopleth.R |only GADMTools-3.5-1/GADMTools/R/33_classDots.R |only GADMTools-3.5-1/GADMTools/R/getBackground.R |only GADMTools-3.5-1/GADMTools/man/figures |only GADMTools-3.5-1/GADMTools/man/gadm.loadCountries.Rd |only GADMTools-3.5-1/GADMTools/man/gadm.remove.Rd |only GADMTools-3.5-1/GADMTools/man/gadm.removeBackground.Rd |only GADMTools-3.5-1/GADMTools/man/gadm.sf.loadCountries.Rd |only GADMTools-3.5-1/GADMTools/man/gadm.sp.loadCountries.Rd |only GADMTools-3.5-1/GADMTools/man/gadm.subset.Rd |only GADMTools-3.5-1/GADMTools/man/gadm.union.Rd |only GADMTools-3.5-1/GADMTools/man/plotmap.Rd |only GADMTools-3.5-1/GADMTools/vignettes/Rplot05.5.png |only GADMTools-3.5-1/GADMTools/vignettes/Rplot40.png |only GADMTools-3.5-1/GADMTools/vignettes/Rplot41.png |only GADMTools-3.5-1/GADMTools/vignettes/Rplot42.png |only GADMTools-3.5-1/GADMTools/vignettes/Rplot43.jpg |only GADMTools-3.5-1/GADMTools/vignettes/Rplot43.png |only GADMTools-3.5-1/GADMTools/vignettes/Rplot44.jpg |only GADMTools-3.5-1/GADMTools/vignettes/Rplot45.jpg |only GADMTools-3.5-1/GADMTools/vignettes/Rplot46.jpg |only GADMTools-3.5-1/GADMTools/vignettes/Rplot47.png |only GADMTools-3.5-1/GADMTools/vignettes/Rplot6_7.png |only GADMTools-3.5-1/GADMTools/vignettes/Rplot_choropleth_01.jpeg |only GADMTools-3.5-1/GADMTools/vignettes/Rplot_choropleth_02.jpeg |only GADMTools-3.5-1/GADMTools/vignettes/Rplot_classDots_01.jpeg |only GADMTools-3.5-1/GADMTools/vignettes/Rplot_isopleth_01.jpeg |only GADMTools-3.5-1/GADMTools/vignettes/Rplot_isopleth_02.jpeg |only GADMTools-3.5-1/GADMTools/vignettes/Rplot_propDots_01.jpeg |only GADMTools-3.5-1/GADMTools/vignettes/Rplot_propDots_02.jpeg |only GADMTools-3.5-1/GADMTools/vignettes/Rplot_propDots_03.jpeg |only GADMTools-3.5-1/GADMTools/vignettes/V_choropleth_01.jpeg |only GADMTools-3.5-1/GADMTools/vignettes/V_dots_01.jpeg |only GADMTools-3.6-1/GADMTools/DESCRIPTION | 18 GADMTools-3.6-1/GADMTools/MD5 | 166 +-- GADMTools-3.6-1/GADMTools/NAMESPACE | 117 +- GADMTools-3.6-1/GADMTools/NEWS | 39 GADMTools-3.6-1/GADMTools/R/00_S3_Definitions.R | 28 GADMTools-3.6-1/GADMTools/R/02_Commons.R |only GADMTools-3.6-1/GADMTools/R/10_gadm_sp_core.R |only GADMTools-3.6-1/GADMTools/R/20_gadm_sf_core.R |only GADMTools-3.6-1/GADMTools/R/22_removeBackground.R | 4 GADMTools-3.6-1/GADMTools/R/30_gadm_crop.R |only GADMTools-3.6-1/GADMTools/R/30_gadm_getBackground.R |only GADMTools-3.6-1/GADMTools/R/30_gadm_getBbox.R |only GADMTools-3.6-1/GADMTools/R/30_gadm_longTo360.R |only GADMTools-3.6-1/GADMTools/R/30_gadm_remove.R |only GADMTools-3.6-1/GADMTools/R/30_gadm_removeBackground.R |only GADMTools-3.6-1/GADMTools/R/30_gadm_subset.R |only GADMTools-3.6-1/GADMTools/R/30_gadm_union.R |only GADMTools-3.6-1/GADMTools/R/33_stripSP.R |only GADMTools-3.6-1/GADMTools/R/34_gt2.propDots.R | 14 GADMTools-3.6-1/GADMTools/R/40_gadm_ggplot2.R |only GADMTools-3.6-1/GADMTools/R/41_classDots.R |only GADMTools-3.6-1/GADMTools/R/41_gt2.choropleth.R |only GADMTools-3.6-1/GADMTools/R/41_gt2.dots.R |only GADMTools-3.6-1/GADMTools/R/41_gt2.isopleth.R |only GADMTools-3.6-1/GADMTools/R/41_propDots.R |only GADMTools-3.6-1/GADMTools/R/42_isopleth.R |only GADMTools-3.6-1/GADMTools/R/44_classDots.R |only GADMTools-3.6-1/GADMTools/R/45_choropleth.R |only GADMTools-3.6-1/GADMTools/R/46_json.choropleth.R |only GADMTools-3.6-1/GADMTools/R/47_fast.choropleth.R |only GADMTools-3.6-1/GADMTools/R/49_dots.gadm_sp.R |only GADMTools-3.6-1/GADMTools/R/90_CoreStats.R |only GADMTools-3.6-1/GADMTools/build/vignette.rds |binary GADMTools-3.6-1/GADMTools/data |only GADMTools-3.6-1/GADMTools/inst/doc/GADMTools_GRAPHICS.R | 242 ++--- GADMTools-3.6-1/GADMTools/inst/doc/GADMTools_GRAPHICS.Rmd | 425 +-------- GADMTools-3.6-1/GADMTools/inst/doc/GADMTools_GRAPHICS.pdf |binary GADMTools-3.6-1/GADMTools/inst/doc/GADMTools_ISO_3166-1_alpha-3.R |only GADMTools-3.6-1/GADMTools/inst/doc/GADMTools_ISO_3166-1_alpha-3.Rmd |only GADMTools-3.6-1/GADMTools/inst/doc/GADMTools_ISO_3166-1_alpha-3.pdf |only GADMTools-3.6-1/GADMTools/inst/doc/GADMTools_Manipulating_Shapefiles.R | 129 +- GADMTools-3.6-1/GADMTools/inst/doc/GADMTools_Manipulating_Shapefiles.Rmd | 433 +++------- GADMTools-3.6-1/GADMTools/inst/doc/GADMTools_Manipulating_Shapefiles.pdf |binary GADMTools-3.6-1/GADMTools/man/Corsica.Rd |only GADMTools-3.6-1/GADMTools/man/GADM36SF.Rd |only GADMTools-3.6-1/GADMTools/man/GADMTools-package.Rd | 4 GADMTools-3.6-1/GADMTools/man/choropleth.Rd | 43 GADMTools-3.6-1/GADMTools/man/classDots.Rd | 17 GADMTools-3.6-1/GADMTools/man/dots.Rd | 20 GADMTools-3.6-1/GADMTools/man/fast.choropleth.Rd | 6 GADMTools-3.6-1/GADMTools/man/gadm.getBackground.Rd | 22 GADMTools-3.6-1/GADMTools/man/gadm.loadStripped.Rd | 10 GADMTools-3.6-1/GADMTools/man/gadm.longTo360.Rd | 19 GADMTools-3.6-1/GADMTools/man/gadm.saveStripped.Rd | 12 GADMTools-3.6-1/GADMTools/man/gadm_crop.Rd |only GADMTools-3.6-1/GADMTools/man/gadm_getBbox.Rd |only GADMTools-3.6-1/GADMTools/man/gadm_plot.Rd |only GADMTools-3.6-1/GADMTools/man/gadm_remove.Rd |only GADMTools-3.6-1/GADMTools/man/gadm_removeBackground.Rd |only GADMTools-3.6-1/GADMTools/man/gadm_sf_loadCountries.Rd |only GADMTools-3.6-1/GADMTools/man/gadm_showNorth.Rd |only GADMTools-3.6-1/GADMTools/man/gadm_showScale.Rd |only GADMTools-3.6-1/GADMTools/man/gadm_sp_loadCountries.Rd |only GADMTools-3.6-1/GADMTools/man/gadm_subset.Rd |only GADMTools-3.6-1/GADMTools/man/gadm_union.Rd |only GADMTools-3.6-1/GADMTools/man/grid.map.Rd | 2 GADMTools-3.6-1/GADMTools/man/isopleth.Rd | 42 GADMTools-3.6-1/GADMTools/man/json.choropleth.Rd | 4 GADMTools-3.6-1/GADMTools/man/listNames.Rd | 20 GADMTools-3.6-1/GADMTools/man/propDots.Rd | 36 GADMTools-3.6-1/GADMTools/man/saveAsStripped.Rd | 10 GADMTools-3.6-1/GADMTools/man/saveas.Rd | 6 GADMTools-3.6-1/GADMTools/man/stripSP.Rd | 10 GADMTools-3.6-1/GADMTools/man/strippedExists.Rd | 6 GADMTools-3.6-1/GADMTools/man/vignette.Rd | 6 GADMTools-3.6-1/GADMTools/vignettes/GADMTools_GRAPHICS.Rmd | 425 +-------- GADMTools-3.6-1/GADMTools/vignettes/GADMTools_ISO_3166-1_alpha-3.Rmd |only GADMTools-3.6-1/GADMTools/vignettes/GADMTools_Manipulating_Shapefiles.Rmd | 433 +++------- GADMTools-3.6-1/GADMTools/vignettes/Rplot.jpeg |only GADMTools-3.6-1/GADMTools/vignettes/Rplot_8.9.png |binary GADMTools-3.6-1/GADMTools/vignettes/Rplot_Benelux.jpeg |only GADMTools-3.6-1/GADMTools/vignettes/Rplot_Corse.jpeg |only GADMTools-3.6-1/GADMTools/vignettes/Rplot_sf_01.jpeg |only GADMTools-3.6-1/GADMTools/vignettes/Rplot_sf_02.jpeg |only 131 files changed, 985 insertions(+), 1783 deletions(-)
Title: Select and Download Climate Data from 'DWD' (German Weather
Service)
Description: Handle climate data from the 'DWD' ('Deutscher Wetterdienst', see
<https://www.dwd.de/EN/climate_environment/cdc/cdc.html> for more information).
Choose files with 'selectDWD()', download and process data sets with 'dataDWD()' and 'readDWD()'.
Author: Berry Boessenkool
Maintainer: Berry Boessenkool <berry-b@gmx.de>
Diff between rdwd versions 0.11.0 dated 2018-11-26 and 1.0.0 dated 2019-03-17
DESCRIPTION | 12 - MD5 | 67 +++++---- NAMESPACE | 5 NEWS | 27 +++ R/createIndex.R | 29 ++-- R/dataDWD.R | 104 ++++++++------- R/dirDWD.R | 12 - R/findID.R | 11 - R/indexFTP.R | 27 ++- R/nearbyStations.R | 59 -------- R/rdwd-package.R | 124 +++--------------- R/readDWD.R | 176 ++++++++++++++++++------- R/readMeta.R |only R/readVars.R | 279 ++++++++++++++++++++++++++++++++++++++--- R/selectDWD.R | 172 +++++++++++++++---------- README.md | 1 build/vignette.rds |binary data/fileIndex.rda |binary data/geoIndex.rda |binary data/metaIndex.rda |binary inst/doc/cases.html | 181 ++++++++++++++++++++++---- inst/doc/mapDWD.html | 41 ++++-- inst/doc/rdwd.html | 137 ++++++++++---------- man/createIndex.Rd | 19 -- man/dataDWD.Rd | 82 +++++------- man/dirDWD.Rd | 10 - man/dwdbase.Rd |only man/findID.Rd | 11 - man/index.Rd | 8 - man/indexFTP.Rd | 16 +- man/nearbyStations.Rd | 59 -------- man/parameter_abbreviations.Rd | 4 man/readDWD.Rd | 38 ++++- man/readMeta.Rd |only man/readVars.Rd | 12 - man/selectDWD.Rd | 101 ++++++-------- 36 files changed, 1082 insertions(+), 742 deletions(-)
Title: Marine Benthic Ecosystem Analysis
Description: Preprocessing tools and biodiversity measures
(species abundance, species richness, population heterogeneity and
sensitivity) for analysing marine benthic data. See Van Loon et al.
(2015) <doi:10.1016/j.seares.2015.05.002> for an application of
these tools.
Author: Dennis Walvoort [aut, cre, cph]
Maintainer: Dennis Walvoort <dennis.Walvoort@wur.nl>
Diff between benthos versions 1.3-5 dated 2018-03-20 and 1.3-6 dated 2019-03-17
DESCRIPTION | 9 MD5 | 16 R/indicators.R | 7 build/vignette.rds |binary inst/doc/benthos.R | 24 inst/doc/benthos.Rmd | 24 inst/doc/benthos.html | 1151 +++++++++++++++++++-------------------- tests/testthat/test-indicators.R | 11 vignettes/benthos.Rmd | 24 9 files changed, 656 insertions(+), 610 deletions(-)
Title: Mathematical Morphology in Any Number of Dimensions
Description: Provides tools for performing mathematical morphology operations,
such as erosion and dilation, on data of arbitrary dimensionality. Can also
be used for finding connected components, resampling, filtering, smoothing
and other image processing-style operations.
Author: Jon Clayden
Maintainer: Jon Clayden <code@clayden.org>
Diff between mmand versions 1.5.3 dated 2017-09-14 and 1.5.4 dated 2019-03-17
DESCRIPTION | 8 ++++---- MD5 | 11 ++++++----- NEWS | 8 ++++++++ R/morph.R | 4 ++++ configure.ac | 2 +- src/lemon/core.h | 21 --------------------- tools/m4 |only 7 files changed, 23 insertions(+), 31 deletions(-)
Title: Extractive Summarization of Text with the LexRank Algorithm
Description: An R implementation of the LexRank algorithm described by G. Erkan and D. R. Radev (2004) <DOI:10.1613/jair.1523>.
Author: Adam Spannbauer [aut, cre], Bryan White [ctb]
Maintainer: Adam Spannbauer <spannbaueradam@gmail.com>
Diff between lexRankr versions 0.5.0 dated 2017-12-13 and 0.5.2 dated 2019-03-17
DESCRIPTION | 9 MD5 | 33 +-- NEWS.md | 8 R/lexRank.R | 4 R/lexRankFromSimil.R | 10 - R/sentenceSimil.R | 6 R/sentenceTokenParse.R | 2 R/sysdata.rda |only R/tokenize.R | 2 README.md | 235 +++----------------------- build/vignette.rds |binary inst/doc/Analyzing_Twitter_with_LexRankr.html | 6 man/lexRank.Rd | 4 man/lexRankFromSimil.Rd | 13 - man/sentenceSimil.Rd | 6 man/sentenceTokenParse.Rd | 2 man/tokenize.Rd | 2 man/unnest_sentences_.Rd | 8 18 files changed, 93 insertions(+), 257 deletions(-)
Title: A Universal Foreach Parallel Adapter using the Future API of the
'future' Package
Description: Provides a '%dopar%' adapter such that any type of futures can
be used as backends for the 'foreach' framework.
Author: Henrik Bengtsson [aut, cre, cph]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between doFuture versions 0.7.0 dated 2019-01-07 and 0.8.0 dated 2019-03-17
DESCRIPTION | 8 +- MD5 | 22 +++---- NAMESPACE | 1 NEWS | 100 ++++++++++++++++++++++------------- R/chunks.R | 44 +++++++++++++++ R/doFuture.R | 64 +++++++++++++--------- R/globals.R | 2 R/utils.R | 36 +++++++++--- build/vignette.rds |binary inst/WORDLIST | 16 ++++- man/makeChunks.Rd | 18 ++++++ tests/cluster-missing-doFuture-pkg.R | 2 12 files changed, 222 insertions(+), 91 deletions(-)
Title: List Comprehensions
Description: Provides 'Python'-style list comprehensions.
List comprehension expressions use usual loops (for(), while() and repeat()) and
usual if() as list producers. In many cases it gives more concise notation than
standard "*apply + filter" strategy.
Author: Gregory Demin [aut, cre]
Maintainer: Gregory Demin <gdemin@gmail.com>
Diff between comprehenr versions 0.5.4 dated 2019-03-08 and 0.6.0 dated 2019-03-17
DESCRIPTION | 6 ++--- MD5 | 28 +++++++++++------------ NAMESPACE | 1 NEWS | 5 ++++ R/numerate.R | 13 ++++++++++- R/to_list.R | 48 ++++++++++++++++++++++++++++++++++++++++- build/vignette.rds |binary inst/doc/Introduction.R | 9 +++++++ inst/doc/Introduction.html | 15 +++++++++++- inst/doc/Introduction.rmd | 15 +++++++++++- man/numerate.Rd | 10 +++++++- man/to_list.Rd | 11 ++++++++- tests/testthat/test_numerate.R | 11 +++++++++ tests/testthat/test_to_list.R | 18 +++++++++++++++ vignettes/Introduction.rmd | 15 +++++++++++- 15 files changed, 178 insertions(+), 27 deletions(-)
Title: High Performance Implementation of the Naive Bayes Algorithm
Description: High performance implementation of the Naive Bayes algorithm.
Author: Michal Majka
Maintainer: Michal Majka <michalmajka@hotmail.com>
Diff between naivebayes versions 0.9.4 dated 2019-03-10 and 0.9.5 dated 2019-03-17
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/naive_bayes.default.R | 2 +- inst/NEWS.Rd | 7 +++++++ 4 files changed, 14 insertions(+), 7 deletions(-)
Title: Site Percolation on Square Lattices (SPSL)
Description: Provides basic functionality for labeling
iso- & anisotropic percolation clusters on 2D & 3D square lattices
with various lattice sizes, occupation probabilities, von Neumann &
Moore (1,d)-neighborhoods, and random variables weighting
the percolation lattice sites.
Author: Pavel V. Moskalev
Maintainer: Pavel V. Moskalev <moskalefff@gmail.com>
Diff between SPSL versions 0.1-8 dated 2012-12-30 and 0.1-9 dated 2019-03-17
SPSL-0.1-8/SPSL/src |only SPSL-0.1-9/SPSL/ChangeLog | 38 ++++++++++++++- SPSL-0.1-9/SPSL/DESCRIPTION | 28 ++++++----- SPSL-0.1-9/SPSL/MD5 | 57 +++++++++++----------- SPSL-0.1-9/SPSL/NAMESPACE | 6 +- SPSL-0.1-9/SPSL/R/fssa20.R | 20 ++++---- SPSL-0.1-9/SPSL/R/fssa2d.R | 20 ++++---- SPSL-0.1-9/SPSL/R/fssi20.R | 20 ++++---- SPSL-0.1-9/SPSL/R/fssi2d.R | 20 ++++---- SPSL-0.1-9/SPSL/R/ssa20.R | 63 ++++++++++++++----------- SPSL-0.1-9/SPSL/R/ssa2d.R | 85 ++++++++++++++++++++++------------ SPSL-0.1-9/SPSL/R/ssi20.R | 63 ++++++++++++++----------- SPSL-0.1-9/SPSL/R/ssi2d.R | 90 ++++++++++++++++++++++-------------- SPSL-0.1-9/SPSL/man/SPSL-package.Rd | 18 ++----- SPSL-0.1-9/SPSL/man/fssa20.Rd | 14 +++-- SPSL-0.1-9/SPSL/man/fssa2d.Rd | 25 +++++----- SPSL-0.1-9/SPSL/man/fssa30.Rd | 14 +++-- SPSL-0.1-9/SPSL/man/fssa3d.Rd | 29 ++++++----- SPSL-0.1-9/SPSL/man/fssi20.Rd | 18 +++---- SPSL-0.1-9/SPSL/man/fssi2d.Rd | 27 ++++++---- SPSL-0.1-9/SPSL/man/fssi30.Rd | 14 +++-- SPSL-0.1-9/SPSL/man/fssi3d.Rd | 30 ++++++------ SPSL-0.1-9/SPSL/man/ssa20.Rd | 13 ++--- SPSL-0.1-9/SPSL/man/ssa2d.Rd | 23 +++++---- SPSL-0.1-9/SPSL/man/ssa30.Rd | 15 ++++-- SPSL-0.1-9/SPSL/man/ssa3d.Rd | 31 +++++++----- SPSL-0.1-9/SPSL/man/ssi20.Rd | 16 +++--- SPSL-0.1-9/SPSL/man/ssi2d.Rd | 25 ++++++---- SPSL-0.1-9/SPSL/man/ssi30.Rd | 15 ++++-- SPSL-0.1-9/SPSL/man/ssi3d.Rd | 31 +++++++----- 30 files changed, 511 insertions(+), 357 deletions(-)
Title: Automatic Item Generator for Quantitative Multiple-Choice Items
Description: A tool for automatic generation of sibling items from a parent item model defined by
the user. It is an implementation of the process automatic item generation (AIG) focused
on generating quantitative multiple-choice type of items (see Embretson, Kingston
(2018) <doi:10.1111/jedm.12166>).
Author: Subhabrata Patra (Shubh) [aut, cre],
Bao Sheng Loe (Aiden) [aut]
Maintainer: Subhabrata Patra (Shubh) <shubh.b.patra@gmail.com>
Diff between QAIG versions 0.1.4 dated 2019-03-15 and 0.1.5 dated 2019-03-17
DESCRIPTION | 12 +++--- MD5 | 16 ++++---- R/itemgen_function.R | 76 ++++++++++++++++++++++------------------ README.md | 1 build/vignette.rds |binary inst/doc/qaig-introduction.Rmd | 4 +- inst/doc/qaig-introduction.html | 8 ++-- man/itemgen.Rd | 65 ++++++++++++++++++---------------- vignettes/qaig-introduction.Rmd | 4 +- 9 files changed, 100 insertions(+), 86 deletions(-)
Title: Qualitative Palettes with Many Colors
Description: Tools for creating, viewing, and assessing qualitative
palettes with many (20-30 or more) colors.
Author: Kevin R. Coombes, Guy Brock
Maintainer: Kevin R. Coombes <krc@silicovore.com>
Diff between Polychrome versions 1.1.1 dated 2018-05-17 and 1.2.0 dated 2019-03-17
DESCRIPTION | 8 MD5 | 36 - NAMESPACE | 2 NEWS | 8 R/viewers.R | 22 - build/vignette.rds |binary data/Dark24.rda |binary data/Light24.rda |binary data/alphabet.rda |binary data/colorsafe.rda |binary data/glasbey.rda |binary data/iscc.rda |binary data/palette36.rda |binary inst/doc/color-deficits.html | 704 +++++++++++++++++---------------- inst/doc/creatingPalettes.html | 869 +++++++++++++++++++---------------------- inst/doc/polychrome.html | 570 ++++++++++++++------------ inst/extData/safeColors.R |only man/iscc.Rd | 6 man/isccNames.Rd | 3 man/utility-sort.Rd |only 20 files changed, 1132 insertions(+), 1096 deletions(-)
Title: 'pbdR' Distributed Matrix Methods
Description: A set of classes for managing distributed matrices, and
a collection of methods for computing linear algebra and
statistics. Computation is handled mostly by routines from the
'pbdBASE' package, which itself relies on the 'ScaLAPACK' and
'PBLAS' numerical libraries for distributed computing.
Author: Drew Schmidt [aut, cre],
Wei-Chen Chen [aut],
Sebastien Lamy de la Chapelle [aut],
George Ostrouchov [aut],
Pragneshkumar Patel [aut],
ZhaoKang Wang [ctb],
Michael Lawrence [ctb],
R Core team [ctb] (some wrappers taken from the base and stats
packages)
Maintainer: Drew Schmidt <wrathematics@gmail.com>
Diff between pbdDMAT versions 0.5-0 dated 2018-12-11 and 0.5-1 dated 2019-03-17
pbdDMAT-0.5-0/pbdDMAT/src/util.c |only pbdDMAT-0.5-1/pbdDMAT/ChangeLog | 6 ++ pbdDMAT-0.5-1/pbdDMAT/DESCRIPTION | 14 ++-- pbdDMAT-0.5-1/pbdDMAT/MD5 | 35 +++++------- pbdDMAT-0.5-1/pbdDMAT/NAMESPACE | 5 + pbdDMAT-0.5-1/pbdDMAT/R/00-classes.r | 2 pbdDMAT-0.5-1/pbdDMAT/R/pbdDMAT-package.R | 6 -- pbdDMAT-0.5-1/pbdDMAT/R/sparsity.r | 3 - pbdDMAT-0.5-1/pbdDMAT/R/utils.r | 2 pbdDMAT-0.5-1/pbdDMAT/R/wrappers.r | 2 pbdDMAT-0.5-1/pbdDMAT/README.md | 9 ++- pbdDMAT-0.5-1/pbdDMAT/inst/doc/pbdDMAT-guide.Rnw | 2 pbdDMAT-0.5-1/pbdDMAT/inst/doc/pbdDMAT-guide.pdf |binary pbdDMAT-0.5-1/pbdDMAT/man/ddmatrix-class.Rd | 2 pbdDMAT-0.5-1/pbdDMAT/man/pbdDMAT-package.Rd | 2 pbdDMAT-0.5-1/pbdDMAT/src/Makevars | 8 +- pbdDMAT-0.5-1/pbdDMAT/vignettes/include/01-introduction.tex | 6 -- pbdDMAT-0.5-1/pbdDMAT/vignettes/include/pbdDMAT.bib | 26 ++++---- pbdDMAT-0.5-1/pbdDMAT/vignettes/pbdDMAT-guide.Rnw | 2 19 files changed, 70 insertions(+), 62 deletions(-)
Title: Provides Access to Git Repositories
Description: Interface to the 'libgit2' library, which is a pure C
implementation of the 'Git' core methods. Provides access to 'Git'
repositories to extract data and running some basic 'Git'
commands.
Author: See AUTHORS file.
Maintainer: Stefan Widgren <stefan.widgren@gmail.com>
Diff between git2r versions 0.24.0 dated 2019-01-07 and 0.25.1 dated 2019-03-17
git2r-0.24.0/git2r/src/libgit2/deps/http-parser/LICENSE-MIT |only git2r-0.24.0/git2r/src/libgit2/src/config_file.h |only git2r-0.24.0/git2r/src/libgit2/src/streams/curl.c |only git2r-0.24.0/git2r/src/libgit2/src/streams/curl.h |only git2r-0.24.0/git2r/tools/libcurl.m4 |only git2r-0.25.1/git2r/DESCRIPTION | 9 git2r-0.25.1/git2r/MD5 | 720 ++++---- git2r-0.25.1/git2r/NAMESPACE | 4 git2r-0.25.1/git2r/NEWS | 40 git2r-0.25.1/git2r/R/blob.R | 1 git2r-0.25.1/git2r/R/branch.R | 2 git2r-0.25.1/git2r/R/bundle_r_package.R | 2 git2r-0.25.1/git2r/R/commit.R | 60 git2r-0.25.1/git2r/R/config.R | 37 git2r-0.25.1/git2r/R/credential.R | 16 git2r-0.25.1/git2r/R/diff.R | 59 git2r-0.25.1/git2r/R/merge.R | 1 git2r-0.25.1/git2r/R/note.R | 1 git2r-0.25.1/git2r/R/pull.R | 2 git2r-0.25.1/git2r/R/push.R | 66 git2r-0.25.1/git2r/R/reference.R | 20 git2r-0.25.1/git2r/R/reflog.R | 3 git2r-0.25.1/git2r/R/repository.R | 4 git2r-0.25.1/git2r/R/sha.R | 2 git2r-0.25.1/git2r/R/signature.R | 1 git2r-0.25.1/git2r/R/stash.R | 78 git2r-0.25.1/git2r/R/status.R | 2 git2r-0.25.1/git2r/R/tag.R | 29 git2r-0.25.1/git2r/R/time.R | 1 git2r-0.25.1/git2r/R/tree.R | 1 git2r-0.25.1/git2r/configure | 854 +++------- git2r-0.25.1/git2r/configure.ac | 166 + git2r-0.25.1/git2r/inst/AUTHORS | 6 git2r-0.25.1/git2r/inst/COPYING | 12 git2r-0.25.1/git2r/inst/COPYRIGHTS | 66 git2r-0.25.1/git2r/man/ahead_behind.Rd | 13 git2r-0.25.1/git2r/man/checkout.Rd | 4 git2r-0.25.1/git2r/man/commits.Rd | 6 git2r-0.25.1/git2r/man/contributions.Rd | 4 git2r-0.25.1/git2r/man/cred_env.Rd | 1 git2r-0.25.1/git2r/man/cred_ssh_key.Rd | 1 git2r-0.25.1/git2r/man/cred_token.Rd | 3 git2r-0.25.1/git2r/man/cred_user_pass.Rd | 6 git2r-0.25.1/git2r/man/descendant_of.Rd | 11 git2r-0.25.1/git2r/man/diff-methods.Rd | 35 git2r-0.25.1/git2r/man/discover_repository.Rd | 2 git2r-0.25.1/git2r/man/git_config_files.Rd | 4 git2r-0.25.1/git2r/man/is_tag.Rd |only git2r-0.25.1/git2r/man/merge.Rd | 4 git2r-0.25.1/git2r/man/note_create.Rd | 4 git2r-0.25.1/git2r/man/push.Rd | 18 git2r-0.25.1/git2r/man/reexports.Rd | 3 git2r-0.25.1/git2r/man/sha.Rd | 3 git2r-0.25.1/git2r/man/status.Rd | 4 git2r-0.25.1/git2r/src/Makevars_libgit2.in | 52 git2r-0.25.1/git2r/src/git2r.c | 4 git2r-0.25.1/git2r/src/git2r_arg.c | 5 git2r-0.25.1/git2r/src/git2r_blame.c | 5 git2r-0.25.1/git2r/src/git2r_blob.c | 13 git2r-0.25.1/git2r/src/git2r_branch.c | 44 git2r-0.25.1/git2r/src/git2r_checkout.c | 17 git2r-0.25.1/git2r/src/git2r_clone.c | 5 git2r-0.25.1/git2r/src/git2r_commit.c | 13 git2r-0.25.1/git2r/src/git2r_config.c | 21 git2r-0.25.1/git2r/src/git2r_deprecated.h |only git2r-0.25.1/git2r/src/git2r_diff.c | 158 + git2r-0.25.1/git2r/src/git2r_diff.h | 16 git2r-0.25.1/git2r/src/git2r_graph.c | 7 git2r-0.25.1/git2r/src/git2r_index.c | 7 git2r-0.25.1/git2r/src/git2r_libgit2.c | 47 git2r-0.25.1/git2r/src/git2r_merge.c | 44 git2r-0.25.1/git2r/src/git2r_note.c | 30 git2r-0.25.1/git2r/src/git2r_object.c | 17 git2r-0.25.1/git2r/src/git2r_odb.c | 83 git2r-0.25.1/git2r/src/git2r_push.c | 5 git2r-0.25.1/git2r/src/git2r_reference.c | 108 - git2r-0.25.1/git2r/src/git2r_reference.h | 1 git2r-0.25.1/git2r/src/git2r_reflog.c | 5 git2r-0.25.1/git2r/src/git2r_remote.c | 21 git2r-0.25.1/git2r/src/git2r_repository.c | 25 git2r-0.25.1/git2r/src/git2r_reset.c | 9 git2r-0.25.1/git2r/src/git2r_revparse.c | 15 git2r-0.25.1/git2r/src/git2r_revwalk.c | 7 git2r-0.25.1/git2r/src/git2r_signature.c | 5 git2r-0.25.1/git2r/src/git2r_stash.c | 29 git2r-0.25.1/git2r/src/git2r_status.c | 5 git2r-0.25.1/git2r/src/git2r_tag.c | 17 git2r-0.25.1/git2r/src/git2r_tree.c | 9 git2r-0.25.1/git2r/src/libgit2/deps/http-parser/COPYING |only git2r-0.25.1/git2r/src/libgit2/deps/regex/COPYING |only git2r-0.25.1/git2r/src/libgit2/include/git2.h | 3 git2r-0.25.1/git2r/src/libgit2/include/git2/annotated_commit.h | 9 git2r-0.25.1/git2r/src/libgit2/include/git2/apply.h |only git2r-0.25.1/git2r/src/libgit2/include/git2/attr.h | 27 git2r-0.25.1/git2r/src/libgit2/include/git2/blame.h | 67 git2r-0.25.1/git2r/src/libgit2/include/git2/blob.h | 2 git2r-0.25.1/git2r/src/libgit2/include/git2/branch.h | 2 git2r-0.25.1/git2r/src/libgit2/include/git2/buffer.h | 4 git2r-0.25.1/git2r/src/libgit2/include/git2/checkout.h | 39 git2r-0.25.1/git2r/src/libgit2/include/git2/cherrypick.h | 10 git2r-0.25.1/git2r/src/libgit2/include/git2/clone.h | 20 git2r-0.25.1/git2r/src/libgit2/include/git2/commit.h | 32 git2r-0.25.1/git2r/src/libgit2/include/git2/common.h | 58 git2r-0.25.1/git2r/src/libgit2/include/git2/config.h | 25 git2r-0.25.1/git2r/src/libgit2/include/git2/deprecated.h |only git2r-0.25.1/git2r/src/libgit2/include/git2/describe.h | 37 git2r-0.25.1/git2r/src/libgit2/include/git2/diff.h | 282 +-- git2r-0.25.1/git2r/src/libgit2/include/git2/errors.h | 100 - git2r-0.25.1/git2r/src/libgit2/include/git2/ignore.h | 4 git2r-0.25.1/git2r/src/libgit2/include/git2/index.h | 129 - git2r-0.25.1/git2r/src/libgit2/include/git2/indexer.h | 34 git2r-0.25.1/git2r/src/libgit2/include/git2/mailmap.h |only git2r-0.25.1/git2r/src/libgit2/include/git2/merge.h | 37 git2r-0.25.1/git2r/src/libgit2/include/git2/net.h | 2 git2r-0.25.1/git2r/src/libgit2/include/git2/notes.h | 2 git2r-0.25.1/git2r/src/libgit2/include/git2/object.h | 32 git2r-0.25.1/git2r/src/libgit2/include/git2/odb.h | 20 git2r-0.25.1/git2r/src/libgit2/include/git2/odb_backend.h | 14 git2r-0.25.1/git2r/src/libgit2/include/git2/oid.h | 2 git2r-0.25.1/git2r/src/libgit2/include/git2/pack.h | 4 git2r-0.25.1/git2r/src/libgit2/include/git2/proxy.h | 14 git2r-0.25.1/git2r/src/libgit2/include/git2/rebase.h | 11 git2r-0.25.1/git2r/src/libgit2/include/git2/refs.h | 31 git2r-0.25.1/git2r/src/libgit2/include/git2/refspec.h | 17 git2r-0.25.1/git2r/src/libgit2/include/git2/remote.h | 108 + git2r-0.25.1/git2r/src/libgit2/include/git2/repository.h | 89 - git2r-0.25.1/git2r/src/libgit2/include/git2/revert.h | 8 git2r-0.25.1/git2r/src/libgit2/include/git2/revwalk.h | 14 git2r-0.25.1/git2r/src/libgit2/include/git2/signature.h | 4 git2r-0.25.1/git2r/src/libgit2/include/git2/stash.h | 23 git2r-0.25.1/git2r/src/libgit2/include/git2/status.h | 12 git2r-0.25.1/git2r/src/libgit2/include/git2/submodule.h | 21 git2r-0.25.1/git2r/src/libgit2/include/git2/sys/alloc.h |only git2r-0.25.1/git2r/src/libgit2/include/git2/sys/commit.h | 2 git2r-0.25.1/git2r/src/libgit2/include/git2/sys/config.h | 26 git2r-0.25.1/git2r/src/libgit2/include/git2/sys/filter.h | 12 git2r-0.25.1/git2r/src/libgit2/include/git2/sys/index.h | 3 git2r-0.25.1/git2r/src/libgit2/include/git2/sys/mempack.h | 76 git2r-0.25.1/git2r/src/libgit2/include/git2/sys/merge.h | 13 git2r-0.25.1/git2r/src/libgit2/include/git2/sys/odb_backend.h | 38 git2r-0.25.1/git2r/src/libgit2/include/git2/sys/path.h |only git2r-0.25.1/git2r/src/libgit2/include/git2/sys/refdb_backend.h | 38 git2r-0.25.1/git2r/src/libgit2/include/git2/sys/stream.h | 104 + git2r-0.25.1/git2r/src/libgit2/include/git2/sys/transport.h | 208 +- git2r-0.25.1/git2r/src/libgit2/include/git2/tag.h | 4 git2r-0.25.1/git2r/src/libgit2/include/git2/trace.h | 2 git2r-0.25.1/git2r/src/libgit2/include/git2/transaction.h | 1 git2r-0.25.1/git2r/src/libgit2/include/git2/transport.h | 65 git2r-0.25.1/git2r/src/libgit2/include/git2/tree.h | 6 git2r-0.25.1/git2r/src/libgit2/include/git2/types.h | 63 git2r-0.25.1/git2r/src/libgit2/include/git2/version.h | 8 git2r-0.25.1/git2r/src/libgit2/include/git2/worktree.h | 59 git2r-0.25.1/git2r/src/libgit2/src/alloc.c |only git2r-0.25.1/git2r/src/libgit2/src/alloc.h |only git2r-0.25.1/git2r/src/libgit2/src/annotated_commit.c | 29 git2r-0.25.1/git2r/src/libgit2/src/apply.c | 507 +++++ git2r-0.25.1/git2r/src/libgit2/src/apply.h | 4 git2r-0.25.1/git2r/src/libgit2/src/array.h | 4 git2r-0.25.1/git2r/src/libgit2/src/attr.c | 22 git2r-0.25.1/git2r/src/libgit2/src/attr_file.c | 40 git2r-0.25.1/git2r/src/libgit2/src/attrcache.c | 22 git2r-0.25.1/git2r/src/libgit2/src/blame.c | 45 git2r-0.25.1/git2r/src/libgit2/src/blame.h | 1 git2r-0.25.1/git2r/src/libgit2/src/blame_git.c | 29 git2r-0.25.1/git2r/src/libgit2/src/blob.c | 78 git2r-0.25.1/git2r/src/libgit2/src/blob.h | 19 git2r-0.25.1/git2r/src/libgit2/src/branch.c | 76 git2r-0.25.1/git2r/src/libgit2/src/buf_text.c | 13 git2r-0.25.1/git2r/src/libgit2/src/buffer.c | 105 - git2r-0.25.1/git2r/src/libgit2/src/buffer.h | 2 git2r-0.25.1/git2r/src/libgit2/src/cache.c | 32 git2r-0.25.1/git2r/src/libgit2/src/cache.h | 4 git2r-0.25.1/git2r/src/libgit2/src/cc-compat.h | 18 git2r-0.25.1/git2r/src/libgit2/src/checkout.c | 155 - git2r-0.25.1/git2r/src/libgit2/src/cherrypick.c | 12 git2r-0.25.1/git2r/src/libgit2/src/clone.c | 40 git2r-0.25.1/git2r/src/libgit2/src/commit.c | 90 - git2r-0.25.1/git2r/src/libgit2/src/commit.h | 1 git2r-0.25.1/git2r/src/libgit2/src/commit_list.c | 12 git2r-0.25.1/git2r/src/libgit2/src/common.h | 68 git2r-0.25.1/git2r/src/libgit2/src/config.c | 311 +-- git2r-0.25.1/git2r/src/libgit2/src/config.h | 15 git2r-0.25.1/git2r/src/libgit2/src/config_backend.h |only git2r-0.25.1/git2r/src/libgit2/src/config_cache.c | 8 git2r-0.25.1/git2r/src/libgit2/src/config_entries.c |only git2r-0.25.1/git2r/src/libgit2/src/config_entries.h |only git2r-0.25.1/git2r/src/libgit2/src/config_file.c | 619 ++----- git2r-0.25.1/git2r/src/libgit2/src/config_mem.c |only git2r-0.25.1/git2r/src/libgit2/src/config_parse.c | 175 +- git2r-0.25.1/git2r/src/libgit2/src/config_parse.h | 8 git2r-0.25.1/git2r/src/libgit2/src/crlf.c | 401 ++-- git2r-0.25.1/git2r/src/libgit2/src/delta.c | 43 git2r-0.25.1/git2r/src/libgit2/src/describe.c | 46 git2r-0.25.1/git2r/src/libgit2/src/diff.c | 24 git2r-0.25.1/git2r/src/libgit2/src/diff_driver.c | 29 git2r-0.25.1/git2r/src/libgit2/src/diff_file.c | 20 git2r-0.25.1/git2r/src/libgit2/src/diff_generate.c | 52 git2r-0.25.1/git2r/src/libgit2/src/diff_generate.h | 2 git2r-0.25.1/git2r/src/libgit2/src/diff_parse.c | 6 git2r-0.25.1/git2r/src/libgit2/src/diff_print.c | 34 git2r-0.25.1/git2r/src/libgit2/src/diff_stats.c | 29 git2r-0.25.1/git2r/src/libgit2/src/diff_tform.c | 28 git2r-0.25.1/git2r/src/libgit2/src/diff_xdiff.c | 18 git2r-0.25.1/git2r/src/libgit2/src/errors.c | 62 git2r-0.25.1/git2r/src/libgit2/src/fetch.c | 6 git2r-0.25.1/git2r/src/libgit2/src/fetchhead.c | 32 git2r-0.25.1/git2r/src/libgit2/src/filebuf.c | 56 git2r-0.25.1/git2r/src/libgit2/src/fileops.c | 108 - git2r-0.25.1/git2r/src/libgit2/src/fileops.h | 2 git2r-0.25.1/git2r/src/libgit2/src/filter.c | 62 git2r-0.25.1/git2r/src/libgit2/src/filter.h | 10 git2r-0.25.1/git2r/src/libgit2/src/global.c | 59 git2r-0.25.1/git2r/src/libgit2/src/hash.h | 5 git2r-0.25.1/git2r/src/libgit2/src/hash/hash_collisiondetect.h | 8 git2r-0.25.1/git2r/src/libgit2/src/hash/hash_openssl.h | 12 git2r-0.25.1/git2r/src/libgit2/src/hash/sha1dc/sha1.c | 2 git2r-0.25.1/git2r/src/libgit2/src/hashsig.c | 8 git2r-0.25.1/git2r/src/libgit2/src/idxmap.c | 30 git2r-0.25.1/git2r/src/libgit2/src/idxmap.h | 22 git2r-0.25.1/git2r/src/libgit2/src/ignore.c | 43 git2r-0.25.1/git2r/src/libgit2/src/index.c | 487 +++-- git2r-0.25.1/git2r/src/libgit2/src/index.h | 16 git2r-0.25.1/git2r/src/libgit2/src/indexer.c | 450 +++-- git2r-0.25.1/git2r/src/libgit2/src/integer.h | 54 git2r-0.25.1/git2r/src/libgit2/src/iterator.c | 165 + git2r-0.25.1/git2r/src/libgit2/src/iterator.h | 15 git2r-0.25.1/git2r/src/libgit2/src/khash.h | 4 git2r-0.25.1/git2r/src/libgit2/src/mailmap.c |only git2r-0.25.1/git2r/src/libgit2/src/mailmap.h |only git2r-0.25.1/git2r/src/libgit2/src/merge.c | 148 + git2r-0.25.1/git2r/src/libgit2/src/merge_driver.c | 14 git2r-0.25.1/git2r/src/libgit2/src/merge_file.c | 2 git2r-0.25.1/git2r/src/libgit2/src/mwindow.c | 16 git2r-0.25.1/git2r/src/libgit2/src/netops.c | 35 git2r-0.25.1/git2r/src/libgit2/src/netops.h | 2 git2r-0.25.1/git2r/src/libgit2/src/notes.c | 25 git2r-0.25.1/git2r/src/libgit2/src/object.c | 189 +- git2r-0.25.1/git2r/src/libgit2/src/object.h | 29 git2r-0.25.1/git2r/src/libgit2/src/object_api.c | 16 git2r-0.25.1/git2r/src/libgit2/src/odb.c | 148 - git2r-0.25.1/git2r/src/libgit2/src/odb.h | 14 git2r-0.25.1/git2r/src/libgit2/src/odb_loose.c | 106 - git2r-0.25.1/git2r/src/libgit2/src/odb_mempack.c | 28 git2r-0.25.1/git2r/src/libgit2/src/odb_pack.c | 26 git2r-0.25.1/git2r/src/libgit2/src/offmap.c | 30 git2r-0.25.1/git2r/src/libgit2/src/offmap.h | 31 git2r-0.25.1/git2r/src/libgit2/src/oid.c | 12 git2r-0.25.1/git2r/src/libgit2/src/oidmap.c | 20 git2r-0.25.1/git2r/src/libgit2/src/oidmap.h | 21 git2r-0.25.1/git2r/src/libgit2/src/pack-objects.c | 136 - git2r-0.25.1/git2r/src/libgit2/src/pack-objects.h | 8 git2r-0.25.1/git2r/src/libgit2/src/pack.c | 116 - git2r-0.25.1/git2r/src/libgit2/src/pack.h | 12 git2r-0.25.1/git2r/src/libgit2/src/parse.c | 11 git2r-0.25.1/git2r/src/libgit2/src/parse.h | 2 git2r-0.25.1/git2r/src/libgit2/src/patch.c | 6 git2r-0.25.1/git2r/src/libgit2/src/patch_generate.c | 36 git2r-0.25.1/git2r/src/libgit2/src/patch_parse.c | 53 git2r-0.25.1/git2r/src/libgit2/src/path.c | 174 -- git2r-0.25.1/git2r/src/libgit2/src/path.h | 74 git2r-0.25.1/git2r/src/libgit2/src/pathspec.c | 12 git2r-0.25.1/git2r/src/libgit2/src/posix.c | 6 git2r-0.25.1/git2r/src/libgit2/src/proxy.c | 2 git2r-0.25.1/git2r/src/libgit2/src/push.c | 53 git2r-0.25.1/git2r/src/libgit2/src/push.h | 3 git2r-0.25.1/git2r/src/libgit2/src/reader.c |only git2r-0.25.1/git2r/src/libgit2/src/reader.h |only git2r-0.25.1/git2r/src/libgit2/src/rebase.c | 103 - git2r-0.25.1/git2r/src/libgit2/src/refdb.c | 6 git2r-0.25.1/git2r/src/libgit2/src/refdb_fs.c | 284 ++- git2r-0.25.1/git2r/src/libgit2/src/reflog.c | 6 git2r-0.25.1/git2r/src/libgit2/src/refs.c | 193 +- git2r-0.25.1/git2r/src/libgit2/src/refs.h | 8 git2r-0.25.1/git2r/src/libgit2/src/refspec.c | 68 git2r-0.25.1/git2r/src/libgit2/src/refspec.h | 2 git2r-0.25.1/git2r/src/libgit2/src/remote.c | 393 ++-- git2r-0.25.1/git2r/src/libgit2/src/remote.h | 9 git2r-0.25.1/git2r/src/libgit2/src/repository.c | 316 ++- git2r-0.25.1/git2r/src/libgit2/src/repository.h | 7 git2r-0.25.1/git2r/src/libgit2/src/reset.c | 16 git2r-0.25.1/git2r/src/libgit2/src/revert.c | 12 git2r-0.25.1/git2r/src/libgit2/src/revparse.c | 65 git2r-0.25.1/git2r/src/libgit2/src/revwalk.c | 104 - git2r-0.25.1/git2r/src/libgit2/src/revwalk.h | 3 git2r-0.25.1/git2r/src/libgit2/src/settings.c | 52 git2r-0.25.1/git2r/src/libgit2/src/signature.c | 30 git2r-0.25.1/git2r/src/libgit2/src/sortedcache.c | 26 git2r-0.25.1/git2r/src/libgit2/src/stash.c | 136 + git2r-0.25.1/git2r/src/libgit2/src/status.c | 26 git2r-0.25.1/git2r/src/libgit2/src/stdalloc.c |only git2r-0.25.1/git2r/src/libgit2/src/stdalloc.h |only git2r-0.25.1/git2r/src/libgit2/src/stream.h | 19 git2r-0.25.1/git2r/src/libgit2/src/streams/mbedtls.c |only git2r-0.25.1/git2r/src/libgit2/src/streams/mbedtls.h |only git2r-0.25.1/git2r/src/libgit2/src/streams/openssl.c | 318 ++- git2r-0.25.1/git2r/src/libgit2/src/streams/openssl.h | 112 - 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Title: Tools for Descriptive Statistics
Description: A collection of miscellaneous basic statistic functions and convenience wrappers for efficiently describing data. The author's intention was to create a toolbox, which facilitates the (notoriously time consuming) first descriptive tasks in data analysis, consisting of calculating descriptive statistics, drawing graphical summaries and reporting the results. The package contains furthermore functions to produce documents using MS Word (or PowerPoint) and functions to import data from Excel. Many of the included functions can be found scattered in other packages and other sources written partly by Titans of R. The reason for collecting them here, was primarily to have them consolidated in ONE instead of dozens of packages (which themselves might depend on other packages which are not needed at all), and to provide a common and consistent interface as far as function and arguments naming, NA handling, recycling rules etc. are concerned. Google style guides were used as naming rules (in absence of convincing alternatives). The 'camel style' was consequently applied to functions borrowed from contributed R packages as well.
Author: Andri Signorell. Includes R source code and/or documentation previously published by (in alphabetical order): Ken Aho, Andreas Alfons, Nanina Anderegg, Tomas Aragon, Antti Arppe, Adrian Baddeley, Kamil Barton, Ben Bolker, Hans W. Borchers, Frederico Caeiro, Stephane Champely, Daniel Chessel, Leanne Chhay, Clint Cummins, Michael Dewey, Harold C. Doran, Stephane Dray, Charles Dupont, Dirk Eddelbuettel, Jeff Enos, Claus Ekstrom, Martin Elff, Kamil Erguler, Richard W. Farebrother, John Fox, Romain Francois, Michael Friendly, Tal Galili, Matthias Gamer, Joseph L. Gastwirth, Yulia R. Gel, Juergen Gross, Gabor Grothendieck, Frank E. Harrell Jr, Richard Heiberger, Michael Hoehle, Christian W. Hoffmann, Soeren Hojsgaard, Torsten Hothorn, Markus Huerzeler, Wallace W. Hui, Pete Hurd, Rob J. Hyndman, Pablo J. Villacorta Iglesias, Christopher Jackson, Matthias Kohl, Mikko Korpela, Max Kuhn, Detlew Labes, Duncan Temple Lang, Friederich Leisch, Jim Lemon, Dong Li, Martin Maechler, Arni Magnusson, Daniel Malter, George Marsaglia, John Marsaglia, Alina Matei, David Meyer, Weiwen Miao, Giovanni Millo, Yongyi Min, David Mitchell, Markus Naepflin, Daniel Navarro, Henric Nilsson, Klaus Nordhausen, Derek Ogle, Hong Ooi, Nick Parsons, Sandrine Pavoine, Tony Plate, Roland Rapold, William Revelle, Tyler Rinker, Brian D. Ripley, Caroline Rodriguez, Nathan Russell, Nick Sabbe, Venkatraman E. Seshan, Greg Snow, Michael Smithson, Karline Soetaert, Werner A. Stahel, Alec Stephenson, Mark Stevenson, Matthias Templ, Terry Therneau, Yves Tille, Adrian Trapletti, Joshua Ulrich, Kevin Ushey, Jeremy VanDerWal, Bill Venables, John Verzani, Gregory R. Warnes, Stefan Wellek, Hadley Wickham, Rand R. Wilcox, Peter Wolf, Daniel Wollschlaeger, Ying Wu, Thomas Yee, Achim Zeileis
Maintainer: Andri Signorell <andri@signorell.net>
Diff between DescTools versions 0.99.27 dated 2019-01-19 and 0.99.28 dated 2019-03-17
DESCRIPTION | 10 - MD5 | 52 +++--- NAMESPACE | 22 +- NEWS | 25 ++ R/DescTools.r | 85 ++++++++- R/Dialogs.r | 360 ++++++++++++++++++++++++++++++++++++++---- R/LinMod.R | 51 +++++ R/PlotQQ.R |only R/StatsAndCIs.r | 105 +++++++++--- R/Tables.r | 106 ++++++++++++ R/Tests.r | 2 data/roulette.rda |binary inst/extdata/SortListAsc.gif |only inst/extdata/SortListDesc.gif |only inst/extdata/SortListNo.gif |only man/BarText.Rd | 6 man/Desc.Rd | 5 man/DescTools-package.Rd | 33 ++- man/Freq2D.Rd |only man/Lc.Rd | 18 +- man/MeanDiffCI.Rd | 6 man/PlotArea.Rd | 10 - man/PlotQQ.Rd | 16 - man/StrExtract.Rd | 3 man/TMod.Rd | 9 - man/VIF.Rd | 2 man/WoolfTest.Rd | 2 man/ZeroIfNA.Rd | 12 + src/init.c | 2 src/ks.c |only 30 files changed, 783 insertions(+), 159 deletions(-)
Title: Functions to Analyze Single System Data
Description: Functions to visually and statistically analyze single system data.
Author: Charles Auerbach [aut, cre],
Wendy Zeitlin [aut]
Maintainer: Charles Auerbach <auerbach@yu.edu>
Diff between SSDforR versions 1.5.2 dated 2019-02-20 and 1.5.3 dated 2019-03-17
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NAMESPACE | 2 +- R/metareg.R | 1 + R/metaregi.R | 1 + 5 files changed, 11 insertions(+), 9 deletions(-)
Title: R Interface to the 'QuantLib' Library
Description: The 'RQuantLib' package makes parts of 'QuantLib' accessible from R
The 'QuantLib' project aims to provide a comprehensive software framework
for quantitative finance. The goal is to provide a standard open source library
for quantitative analysis, modeling, trading, and risk management of financial
assets.
Author: Dirk Eddelbuettel, Khanh Nguyen (2009-2010), Terry Leitch (since 2016)
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RQuantLib versions 0.4.7 dated 2018-12-10 and 0.4.8 dated 2019-03-17
ChangeLog | 54 ++++ DESCRIPTION | 8 MD5 | 60 ++-- R/RcppExports.R | 4 R/arrays.R | 3 README.md | 20 - configure | 18 - configure.ac | 6 inst/NEWS.Rd | 25 + inst/include/RQuantLib.h | 3 inst/include/rquantlib_impl.h | 11 inst/include/rquantlib_internal.h | 22 - inst/include/rquantlib_wrappers.h | 5 src/affine.cpp | 137 +++++----- src/asian.cpp | 60 ++-- src/barrier_binary.cpp | 132 ++++------ src/bermudan.cpp | 195 +++++++------- src/bonds.cpp | 495 ++++++++++++++++++-------------------- src/calendars.cpp | 57 ++-- src/curves.cpp | 145 +++++------ src/dates.cpp | 4 src/daycounter.cpp | 19 - src/discount.cpp | 68 ++--- src/hullwhite.cpp | 81 +++--- src/implieds.cpp | 76 ++--- src/modules.cpp | 11 src/sabr.cpp | 172 ++++++------- src/schedule.cpp | 5 src/utils.cpp | 331 ++++++++++++------------- src/vanilla.cpp | 151 +++++------ src/zero.cpp | 47 +-- 31 files changed, 1233 insertions(+), 1192 deletions(-)
Title: Multivariate Multiscale Framework for Independence Tests
Description: Test for independence of two random vectors, learn and report the dependency structure. For more information, see Gorsky and Ma (2018) <arXiv:1806.06777>.
Author: S. Gorsky, L. Ma
Maintainer: S. Gorsky <s.gorsky@duke.edu>
Diff between MultiFit versions 0.1.2 dated 2018-08-05 and 1.0.0 dated 2019-03-17
MultiFit-0.1.2/MultiFit/src/Makevars |only MultiFit-0.1.2/MultiFit/src/Makevars.win |only MultiFit-1.0.0/MultiFit/DESCRIPTION | 8 MultiFit-1.0.0/MultiFit/MD5 | 34 - MultiFit-1.0.0/MultiFit/NEWS.md | 3 MultiFit-1.0.0/MultiFit/R/RcppExports.R | 4 MultiFit-1.0.0/MultiFit/R/multiFit.R | 466 +++++++++++++------------ MultiFit-1.0.0/MultiFit/R/utilities.R | 207 +++++------ MultiFit-1.0.0/MultiFit/inst/doc/multiFit.R | 83 ++-- MultiFit-1.0.0/MultiFit/inst/doc/multiFit.Rmd | 128 +++--- MultiFit-1.0.0/MultiFit/inst/doc/multiFit.html | 347 +++++++++--------- MultiFit-1.0.0/MultiFit/man/multiFit.Rd | 66 ++- MultiFit-1.0.0/MultiFit/man/multiSummary.Rd | 16 MultiFit-1.0.0/MultiFit/man/permNullTest.Rd | 5 MultiFit-1.0.0/MultiFit/src/RcppExports.cpp | 10 MultiFit-1.0.0/MultiFit/src/discretize.cpp | 30 - MultiFit-1.0.0/MultiFit/src/makeCDF.cpp | 24 - MultiFit-1.0.0/MultiFit/src/singleFisher.cpp | 4 MultiFit-1.0.0/MultiFit/vignettes/multiFit.Rmd | 128 +++--- 19 files changed, 825 insertions(+), 738 deletions(-)
Title: Tools for Fast Computing and Plotting Euclidean Minimum Spanning
Trees
Description: Computes Euclidean Minimum Spanning Trees (EMST) using the fast
Dual-Tree Boruvka algorithm (March, Ram, Gray, 2010,
<doi:10.1145/1835804.1835882>) implemented in 'mlpack' - the C++ Machine
Learning library (Curtin et al., 2013). 'emstreeR' heavily relies on
'RcppMLPACK' and 'Rcpp', working as a wrapper to the C++ fast EMST
algorithm. Thus, R users do not have to deal with the R-'Rcpp'-C++
integration. The package also provides functions and an S3 method for
readily plotting Minimum Spanning Trees (MST) using either 'base' R,
'scatterplot3d' or 'ggplot2' style.
Author: Allan Quadros [aut, cre],
Andre Cancado [ctb]
Maintainer: Allan Quadros <allanvcq@gmail.com>
Diff between emstreeR versions 2.1.1 dated 2019-01-19 and 2.1.2 dated 2019-03-17
emstreeR-2.1.1/emstreeR/man/figures/README-base-1.png |only emstreeR-2.1.1/emstreeR/man/figures/README-ggmaps-1.png |only emstreeR-2.1.1/emstreeR/man/figures/README-ggplot-1.png |only emstreeR-2.1.1/emstreeR/man/figures/README-ggplot_curved-1.png |only emstreeR-2.1.1/emstreeR/man/figures/README-scatterplot3d-1.png |only emstreeR-2.1.2/emstreeR/DESCRIPTION | 29 ++--- emstreeR-2.1.2/emstreeR/MD5 | 34 +++--- emstreeR-2.1.2/emstreeR/NEWS.md | 12 ++ emstreeR-2.1.2/emstreeR/R/ComputeMST.R | 12 +- emstreeR-2.1.2/emstreeR/R/plot.MST.R | 6 - emstreeR-2.1.2/emstreeR/R/plotMST3D.R | 12 +- emstreeR-2.1.2/emstreeR/R/stat-MST.R | 23 ++-- emstreeR-2.1.2/emstreeR/README.md | 52 ++++------ emstreeR-2.1.2/emstreeR/man/ComputeMST.Rd | 12 +- emstreeR-2.1.2/emstreeR/man/emstreeR-package.Rd | 20 +-- emstreeR-2.1.2/emstreeR/man/figures/README-plot-1.png |only emstreeR-2.1.2/emstreeR/man/figures/README-plotMST3D-1.png |only emstreeR-2.1.2/emstreeR/man/figures/README-statMST-1.png |only emstreeR-2.1.2/emstreeR/man/figures/README-statMST_curved-1.png |only emstreeR-2.1.2/emstreeR/man/figures/README-statMST_ggmaps-1.png |only emstreeR-2.1.2/emstreeR/man/plot.MST.Rd | 6 - emstreeR-2.1.2/emstreeR/man/plotMST3D.Rd | 12 +- emstreeR-2.1.2/emstreeR/man/stat_MST.Rd | 23 ++-- 23 files changed, 132 insertions(+), 121 deletions(-)
Title: Psychometric Mixture Models
Description: Psychometric mixture models based on 'flexmix' infrastructure. At the moment Rasch mixture models
with different parameterizations of the score distribution (saturated vs. mean/variance specification),
Bradley-Terry mixture models, and MPT mixture models are implemented. These mixture models can be estimated
with or without concomitant variables. See vignette('raschmix', package = 'psychomix') for details on the
Rasch mixture models.
Author: Hannah Frick [aut, cre] (<https://orcid.org/0000-0002-6049-5258>),
Friedrich Leisch [aut],
Carolin Strobl [aut],
Florian Wickelmaier [aut],
Achim Zeileis [aut] (<https://orcid.org/0000-0003-0918-3766>)
Maintainer: Hannah Frick <hannah.frick@gmail.com>
Diff between psychomix versions 1.1-5 dated 2018-12-19 and 1.1-6 dated 2019-03-17
DESCRIPTION | 8 ++++---- MD5 | 30 +++++++++++++++--------------- NEWS | 6 ++++++ build/partial.rdb |binary build/vignette.rds |binary inst/doc/raschmix.R | 1 + inst/doc/raschmix.Rnw | 1 + inst/doc/raschmix.pdf |binary inst/doc/scores.R | 1 + inst/doc/scores.Rnw | 1 + inst/doc/scores.pdf |binary tests/Examples/psychomix-Ex.Rout.save | 2 +- vignettes/raschmix.Rnw | 1 + vignettes/raschmix.Rout.save | 8 +++++--- vignettes/scores.Rnw | 1 + vignettes/scores.Rout.save | 4 +++- 16 files changed, 40 insertions(+), 24 deletions(-)
Title: 'ggplot2' Based Plots with Statistical Details
Description: Extension of 'ggplot2', 'ggstatsplot' creates
graphics with details from statistical tests included in the plots
themselves. It is targeted primarily at behavioral sciences community
to provide a one-line code to generate information-rich plots for
statistical analysis of continuous (violin plots, scatterplots,
histograms, dot plots, dot-and-whisker plots) or categorical (pie and
bar charts) data. Currently, it supports only the most common types of
statistical tests: parametric, nonparametric, robust, and bayesian
versions of t-test/anova, correlation analyses, contingency table
analysis, and regression analyses.
Author: Indrajeet Patil [cre, aut, ctb]
(<https://orcid.org/0000-0003-1995-6531>),
Chuck Powell [aut, ctb] (<https://orcid.org/0000-0002-3606-2188>)
Maintainer: Indrajeet Patil <patilindrajeet.science@gmail.com>
Diff between ggstatsplot versions 0.0.9 dated 2019-02-18 and 0.0.10 dated 2019-03-17
ggstatsplot-0.0.10/ggstatsplot/DESCRIPTION | 45 ggstatsplot-0.0.10/ggstatsplot/MD5 | 261 ++-- ggstatsplot-0.0.10/ggstatsplot/NAMESPACE | 23 ggstatsplot-0.0.10/ggstatsplot/NEWS.md | 37 ggstatsplot-0.0.10/ggstatsplot/R/cohenG_ci.R |only ggstatsplot-0.0.10/ggstatsplot/R/data.R | 33 ggstatsplot-0.0.10/ggstatsplot/R/ggbetweenstats.R | 221 --- ggstatsplot-0.0.10/ggstatsplot/R/ggcoefstats.R | 222 +-- ggstatsplot-0.0.10/ggstatsplot/R/gghistostats.R | 5 ggstatsplot-0.0.10/ggstatsplot/R/ggpiestats.R | 3 ggstatsplot-0.0.10/ggstatsplot/R/ggwithinstats.R |only ggstatsplot-0.0.10/ggstatsplot/R/global_vars.R | 6 ggstatsplot-0.0.10/ggstatsplot/R/grouped_ggdotplotstats.R | 1 ggstatsplot-0.0.10/ggstatsplot/R/grouped_gghistostats.R | 10 ggstatsplot-0.0.10/ggstatsplot/R/grouped_ggpiestats.R | 1 ggstatsplot-0.0.10/ggstatsplot/R/helpers_bf_tests.R | 5 ggstatsplot-0.0.10/ggstatsplot/R/helpers_common_aesthetic.R |only ggstatsplot-0.0.10/ggstatsplot/R/helpers_effsize_ci.R | 162 -- ggstatsplot-0.0.10/ggstatsplot/R/helpers_ggbetween_anova_subtitles.R | 157 ++ ggstatsplot-0.0.10/ggstatsplot/R/helpers_ggbetween_t_subtitles.R | 279 ++-- ggstatsplot-0.0.10/ggstatsplot/R/helpers_ggbetweenstats.R | 269 ++++ ggstatsplot-0.0.10/ggstatsplot/R/helpers_ggcatstats.R | 2 ggstatsplot-0.0.10/ggstatsplot/R/helpers_ggcoefstats.R | 9 ggstatsplot-0.0.10/ggstatsplot/R/helpers_gghistostats_subtitles.R | 86 + ggstatsplot-0.0.10/ggstatsplot/R/helpers_ggpiestats_subtitles.R | 188 +-- ggstatsplot-0.0.10/ggstatsplot/R/helpers_ggscatterstats_subtitles.R | 4 ggstatsplot-0.0.10/ggstatsplot/R/helpers_messages.R | 4 ggstatsplot-0.0.10/ggstatsplot/R/helpers_pairwise_comparison.R | 52 ggstatsplot-0.0.10/ggstatsplot/R/switch_functions.R | 5 ggstatsplot-0.0.10/ggstatsplot/README.md | 45 ggstatsplot-0.0.10/ggstatsplot/data/VR_dilemma.rdata |only ggstatsplot-0.0.10/ggstatsplot/inst/CITATION |only ggstatsplot-0.0.10/ggstatsplot/inst/WORDLIST | 3 ggstatsplot-0.0.10/ggstatsplot/inst/doc/additional.Rmd | 3 ggstatsplot-0.0.10/ggstatsplot/inst/doc/additional.html | 11 ggstatsplot-0.0.10/ggstatsplot/man/VR_dilemma.Rd |only ggstatsplot-0.0.10/ggstatsplot/man/aesthetic_addon.Rd |only ggstatsplot-0.0.10/ggstatsplot/man/bf_caption_maker.Rd | 4 ggstatsplot-0.0.10/ggstatsplot/man/cohenG_ci.Rd |only ggstatsplot-0.0.10/ggstatsplot/man/cor_test_ci.Rd | 4 ggstatsplot-0.0.10/ggstatsplot/man/effsize_ci_message.Rd | 4 ggstatsplot-0.0.10/ggstatsplot/man/effsize_t_parametric.Rd | 33 ggstatsplot-0.0.10/ggstatsplot/man/figures/README-ggbarstats1-1.png |binary ggstatsplot-0.0.10/ggstatsplot/man/figures/README-ggbarstats2-1.png |binary ggstatsplot-0.0.10/ggstatsplot/man/figures/README-ggbetweenstats1-1.png |binary ggstatsplot-0.0.10/ggstatsplot/man/figures/README-ggbetweenstats2-1.png |binary ggstatsplot-0.0.10/ggstatsplot/man/figures/README-ggbetweenstats3-1.png |binary ggstatsplot-0.0.10/ggstatsplot/man/figures/README-ggbetweenstats4-1.png |binary ggstatsplot-0.0.10/ggstatsplot/man/figures/README-ggcorrmat3-1.png |binary ggstatsplot-0.0.10/ggstatsplot/man/figures/README-ggdotplotstats1-1.png |binary ggstatsplot-0.0.10/ggstatsplot/man/figures/README-ggdotplotstats2-1.png |binary ggstatsplot-0.0.10/ggstatsplot/man/figures/README-gghistostats2-1.png |binary ggstatsplot-0.0.10/ggstatsplot/man/figures/README-gghistostats4-1.png |binary ggstatsplot-0.0.10/ggstatsplot/man/figures/README-ggpiestats2-1.png |binary ggstatsplot-0.0.10/ggstatsplot/man/figures/README-ggpiestats3-1.png |binary ggstatsplot-0.0.10/ggstatsplot/man/figures/README-ggscatterstats2-1.png |binary ggstatsplot-0.0.10/ggstatsplot/man/figures/README-pirateplot-1.png |binary ggstatsplot-0.0.10/ggstatsplot/man/figures/README-theme_ggstatsplot-1.png |binary ggstatsplot-0.0.10/ggstatsplot/man/ggbarstats.Rd | 7 ggstatsplot-0.0.10/ggstatsplot/man/ggbetweenstats.Rd | 4 ggstatsplot-0.0.10/ggstatsplot/man/ggbetweenstats_switch.Rd | 2 ggstatsplot-0.0.10/ggstatsplot/man/ggcoefstats.Rd | 42 ggstatsplot-0.0.10/ggstatsplot/man/ggcoefstats_label_maker.Rd | 8 ggstatsplot-0.0.10/ggstatsplot/man/ggdotplotstats.Rd | 4 ggstatsplot-0.0.10/ggstatsplot/man/gghistostats.Rd | 20 ggstatsplot-0.0.10/ggstatsplot/man/ggpiestats.Rd | 7 ggstatsplot-0.0.10/ggstatsplot/man/ggscatterstats.Rd | 4 ggstatsplot-0.0.10/ggstatsplot/man/ggsignif_adder.Rd |only ggstatsplot-0.0.10/ggstatsplot/man/ggwithinstats.Rd |only ggstatsplot-0.0.10/ggstatsplot/man/grouped_ggbarstats.Rd | 7 ggstatsplot-0.0.10/ggstatsplot/man/grouped_ggbetweenstats.Rd | 4 ggstatsplot-0.0.10/ggstatsplot/man/grouped_ggdotplotstats.Rd | 4 ggstatsplot-0.0.10/ggstatsplot/man/grouped_gghistostats.Rd | 17 ggstatsplot-0.0.10/ggstatsplot/man/grouped_ggpiestats.Rd | 7 ggstatsplot-0.0.10/ggstatsplot/man/grouped_ggscatterstats.Rd | 4 ggstatsplot-0.0.10/ggstatsplot/man/kw_eta_h_ci.Rd | 4 ggstatsplot-0.0.10/ggstatsplot/man/mean_ggrepel.Rd |only ggstatsplot-0.0.10/ggstatsplot/man/outlier_df.Rd |only ggstatsplot-0.0.10/ggstatsplot/man/robcor_ci.Rd | 4 ggstatsplot-0.0.10/ggstatsplot/man/subtitle_anova_parametric.Rd | 4 ggstatsplot-0.0.10/ggstatsplot/man/subtitle_anova_parametric_repeated.Rd |only ggstatsplot-0.0.10/ggstatsplot/man/subtitle_anova_robust.Rd | 4 ggstatsplot-0.0.10/ggstatsplot/man/subtitle_contingency_tab.Rd | 11 ggstatsplot-0.0.10/ggstatsplot/man/subtitle_ggscatterstats.Rd | 4 ggstatsplot-0.0.10/ggstatsplot/man/subtitle_kw_nonparametric.Rd | 4 ggstatsplot-0.0.10/ggstatsplot/man/subtitle_mann_nonparametric.Rd | 91 + ggstatsplot-0.0.10/ggstatsplot/man/subtitle_onesample_proptest.Rd | 2 ggstatsplot-0.0.10/ggstatsplot/man/subtitle_t_onesample.Rd | 19 ggstatsplot-0.0.10/ggstatsplot/man/subtitle_t_robust.Rd | 4 ggstatsplot-0.0.10/ggstatsplot/man/t1way_ci.Rd | 4 ggstatsplot-0.0.10/ggstatsplot/man/tfz_labeller.Rd | 2 ggstatsplot-0.0.10/ggstatsplot/man/yuend_ci.Rd | 4 ggstatsplot-0.0.10/ggstatsplot/tests/README.md | 542 ++++---- ggstatsplot-0.0.10/ggstatsplot/tests/testthat/test_cohen_g_ci.R |only ggstatsplot-0.0.10/ggstatsplot/tests/testthat/test_cor_test_ci.R | 57 ggstatsplot-0.0.10/ggstatsplot/tests/testthat/test_effsize_t_parametric.R | 55 ggstatsplot-0.0.10/ggstatsplot/tests/testthat/test_ggbarstats.R | 8 ggstatsplot-0.0.10/ggstatsplot/tests/testthat/test_ggbetweenstats.R | 16 ggstatsplot-0.0.10/ggstatsplot/tests/testthat/test_ggcoefstats.R | 166 -- ggstatsplot-0.0.10/ggstatsplot/tests/testthat/test_ggcoefstats_label_maker.R | 30 ggstatsplot-0.0.10/ggstatsplot/tests/testthat/test_ggcorrmat.R | 4 ggstatsplot-0.0.10/ggstatsplot/tests/testthat/test_gghistostats.R | 4 ggstatsplot-0.0.10/ggstatsplot/tests/testthat/test_ggpiestats.R | 3 ggstatsplot-0.0.10/ggstatsplot/tests/testthat/test_ggscatterstats.R | 3 ggstatsplot-0.0.10/ggstatsplot/tests/testthat/test_ggsignif_adder.R |only ggstatsplot-0.0.10/ggstatsplot/tests/testthat/test_ggwithinstats.R |only ggstatsplot-0.0.10/ggstatsplot/tests/testthat/test_grouped_ggbarstats.R | 4 ggstatsplot-0.0.10/ggstatsplot/tests/testthat/test_grouped_gghistostats.R | 4 ggstatsplot-0.0.10/ggstatsplot/tests/testthat/test_grouped_ggpiestats.R | 2 ggstatsplot-0.0.10/ggstatsplot/tests/testthat/test_grouped_list.R | 1 ggstatsplot-0.0.10/ggstatsplot/tests/testthat/test_helpers_bf_tests.R | 4 ggstatsplot-0.0.10/ggstatsplot/tests/testthat/test_kw_eta_h_ci.R | 12 ggstatsplot-0.0.10/ggstatsplot/tests/testthat/test_lm_effsize_ci.R | 30 ggstatsplot-0.0.10/ggstatsplot/tests/testthat/test_mean_ggrepel.R |only ggstatsplot-0.0.10/ggstatsplot/tests/testthat/test_mean_labeller.R | 21 ggstatsplot-0.0.10/ggstatsplot/tests/testthat/test_outlier_df.R |only ggstatsplot-0.0.10/ggstatsplot/tests/testthat/test_pairwise_ggsignif.R | 224 +-- ggstatsplot-0.0.10/ggstatsplot/tests/testthat/test_pairwise_p.R | 66 + ggstatsplot-0.0.10/ggstatsplot/tests/testthat/test_robcor_ci.R | 16 ggstatsplot-0.0.10/ggstatsplot/tests/testthat/test_subtitle_anova_bayes.R | 2 ggstatsplot-0.0.10/ggstatsplot/tests/testthat/test_subtitle_anova_parametric.R | 20 ggstatsplot-0.0.10/ggstatsplot/tests/testthat/test_subtitle_anova_parametric_repeated.R |only ggstatsplot-0.0.10/ggstatsplot/tests/testthat/test_subtitle_anova_robust.R | 18 ggstatsplot-0.0.10/ggstatsplot/tests/testthat/test_subtitle_contingency_tab.R | 16 ggstatsplot-0.0.10/ggstatsplot/tests/testthat/test_subtitle_contingency_tab_gof.R | 4 ggstatsplot-0.0.10/ggstatsplot/tests/testthat/test_subtitle_contingency_tab_paired.R | 98 + ggstatsplot-0.0.10/ggstatsplot/tests/testthat/test_subtitle_friedman_nonparametric.R | 2 ggstatsplot-0.0.10/ggstatsplot/tests/testthat/test_subtitle_ggscatterstats.R | 12 ggstatsplot-0.0.10/ggstatsplot/tests/testthat/test_subtitle_kw_nonparametric.R | 10 ggstatsplot-0.0.10/ggstatsplot/tests/testthat/test_subtitle_mann_nonparametric.R | 83 - ggstatsplot-0.0.10/ggstatsplot/tests/testthat/test_subtitle_t_bayes.R | 2 ggstatsplot-0.0.10/ggstatsplot/tests/testthat/test_subtitle_t_onesample.R | 183 ++- ggstatsplot-0.0.10/ggstatsplot/tests/testthat/test_subtitle_t_parametric.R | 16 ggstatsplot-0.0.10/ggstatsplot/tests/testthat/test_subtitle_t_robust.R | 12 ggstatsplot-0.0.10/ggstatsplot/tests/testthat/test_t1way_ci.R | 22 ggstatsplot-0.0.10/ggstatsplot/tests/testthat/test_yuend_ci.R | 34 ggstatsplot-0.0.10/ggstatsplot/vignettes/additional.Rmd | 3 ggstatsplot-0.0.10/ggstatsplot/vignettes/web_only/ggcoefstats.Rmd | 605 ++++++---- ggstatsplot-0.0.10/ggstatsplot/vignettes/web_only/ggpiestats.Rmd | 1 ggstatsplot-0.0.10/ggstatsplot/vignettes/web_only/ggstatsplot_paper.Rmd | 8 ggstatsplot-0.0.9/ggstatsplot/man/chisq_v_ci.Rd |only ggstatsplot-0.0.9/ggstatsplot/tests/testthat/test_chisq_v_ci.R |only 142 files changed, 2884 insertions(+), 2038 deletions(-)
Title: Simulation and Analysis of Contextual Multi-Armed Bandit
Policies
Description: Facilitates the simulation and evaluation of context-free
and contextual multi-Armed Bandit policies or algorithms to ease the
implementation, evaluation, and dissemination of both existing and
new bandit algorithms and policies.
Author: Robin van Emden [aut, cre] (<https://orcid.org/0000-0001-5820-8638>),
Maurits Kaptein [ctb] (<https://orcid.org/0000-0002-6316-7524>)
Maintainer: Robin van Emden <robinvanemden@gmail.com>
Diff between contextual versions 0.9.8 dated 2019-02-10 and 0.9.8.1 dated 2019-03-17
contextual-0.9.8.1/contextual/DESCRIPTION | 8 contextual-0.9.8.1/contextual/MD5 | 233 ++--- contextual-0.9.8.1/contextual/NAMESPACE | 3 contextual-0.9.8.1/contextual/NEWS.md | 5 contextual-0.9.8.1/contextual/R/agent.R | 1 contextual-0.9.8.1/contextual/R/bandit.R | 7 contextual-0.9.8.1/contextual/R/bandit_offline_bootstrapped_replay.R | 36 contextual-0.9.8.1/contextual/R/bandit_offline_doubly_robust.R | 29 contextual-0.9.8.1/contextual/R/bandit_offline_propensity_weighting.R | 31 contextual-0.9.8.1/contextual/R/bandit_offline_replay_evaluator_lookup.R | 8 contextual-0.9.8.1/contextual/R/functions_utility.R | 84 + contextual-0.9.8.1/contextual/R/history.R | 84 + contextual-0.9.8.1/contextual/R/policy.R | 26 contextual-0.9.8.1/contextual/R/policy_cmab_lin_epoch_greedy.R | 4 contextual-0.9.8.1/contextual/R/policy_cmab_lin_epsilon_greedy.R | 4 contextual-0.9.8.1/contextual/R/policy_cmab_lin_ts_disjoint.R | 4 contextual-0.9.8.1/contextual/R/policy_cmab_lin_ucb_disjoint.R | 4 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Title: Create Tidy Data Frames of Marginal Effects for 'ggplot' from
Model Outputs
Description: Compute marginal effects from statistical models and returns the
result as tidy data frames. These data frames are ready to use with the
'ggplot2'-package. Marginal effects can be calculated for many different
models. Interaction terms, splines and polynomial terms are also supported.
The main functions are ggpredict(), ggemmeans() and ggeffect(). There is a
generic plot()-method to plot the results using 'ggplot2'.
Author: Daniel Lüdecke [aut, cre] (<https://orcid.org/0000-0002-8895-3206>)
Maintainer: Daniel Lüdecke <d.luedecke@uke.de>
Diff between ggeffects versions 0.8.0 dated 2019-01-09 and 0.9.0 dated 2019-03-17
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Title: Cyclic Coordinate Descent for Logistic, Poisson and Survival
Analysis
Description: This model fitting tool incorporates cyclic coordinate descent and
majorization-minimization approaches to fit a variety of regression models
found in large-scale observational healthcare data. Implementations focus
on computational optimization and fine-scale parallelization to yield
efficient inference in massive datasets. Please see:
Suchard, Simpson, Zorych, Ryan and Madigan (2013) <doi:10.1145/2414416.2414791>.
Author: Marc A. Suchard [aut, cre],
Martijn J. Schuemie [aut],
Trevor R. Shaddox [aut],
Yuxi Tian [aut],
Jianxiao Yang [aut],
Sushil Mittal [ctb],
Observational Health Data Sciences and Informatics [cph],
Marcus Geelnard [cph, ctb] (provided the TinyThread library),
Rutgers University [cph, ctb] (provided the HParSearch routine),
R Development Core Team [cph, ctb] (provided the ZeroIn routine)
Maintainer: Marc A. Suchard <msuchard@ucla.edu>
Diff between Cyclops versions 2.0.1 dated 2018-09-23 and 2.0.2 dated 2019-03-17
Cyclops-2.0.1/Cyclops/NEWS |only Cyclops-2.0.1/Cyclops/inst/NEWS.Rd |only Cyclops-2.0.2/Cyclops/DESCRIPTION | 8 Cyclops-2.0.2/Cyclops/MD5 | 52 ++--- Cyclops-2.0.2/Cyclops/NEWS.md |only Cyclops-2.0.2/Cyclops/R/ModelFit.R | 11 - Cyclops-2.0.2/Cyclops/README.md | 46 ++-- Cyclops-2.0.2/Cyclops/man/convertToCyclopsData.Rd | 7 Cyclops-2.0.2/Cyclops/man/createControl.Rd | 11 - Cyclops-2.0.2/Cyclops/man/createCyclopsData.Rd | 4 Cyclops-2.0.2/Cyclops/man/createPrior.Rd | 3 Cyclops-2.0.2/Cyclops/man/getUnivariableCorrelation.Rd | 3 Cyclops-2.0.2/Cyclops/man/simulateCyclopsData.Rd | 4 Cyclops-2.0.2/Cyclops/man/vcov.cyclopsFit.Rd | 4 Cyclops-2.0.2/Cyclops/src/RcppCyclopsInterface.cpp | 4 Cyclops-2.0.2/Cyclops/src/cyclops/CyclicCoordinateDescent.cpp | 2 Cyclops-2.0.2/Cyclops/src/cyclops/Types.h | 13 - Cyclops-2.0.2/Cyclops/src/cyclops/priors/CovariatePrior.cpp | 2 Cyclops-2.0.2/Cyclops/src/cyclops/priors/CovariatePrior.h | 103 ++++++++++ Cyclops-2.0.2/Cyclops/src/cyclops/priors/NewCovariatePrior.h | 4 Cyclops-2.0.2/Cyclops/tests/testthat/test-cv.R | 1 Cyclops-2.0.2/Cyclops/tests/testthat/test-dataConversionStratified.R | 1 Cyclops-2.0.2/Cyclops/tests/testthat/test-fastBarUpdate.R |only Cyclops-2.0.2/Cyclops/tests/testthat/test-floatingPoint.R | 1 Cyclops-2.0.2/Cyclops/tests/testthat/test-largeBernoulli.R | 1 Cyclops-2.0.2/Cyclops/tests/testthat/test-parameterizedPriors.R | 1 Cyclops-2.0.2/Cyclops/tests/testthat/test-smallCox.R | 2 Cyclops-2.0.2/Cyclops/tests/testthat/test-weighted_cv.R | 1 Cyclops-2.0.2/Cyclops/tests/testthat/test-xyConstructor.R | 1 29 files changed, 205 insertions(+), 85 deletions(-)
Title: Convex Switching Systems
Description: The numerical treatment of optimal switching problems in a finite time setting when the state evolves as a controlled Markov chain consisting of a uncontrolled continuous component following linear dynamics and a controlled Markov chain taking values in a finite set. The reward functions are assumed to be convex and Lipschitz continuous in the continuous state. The action set is finite.
Author: Jeremy Yee and Juri Hinz
Maintainer: Jeremy Yee <jeremyyee@outlook.com.au>
Diff between rcss versions 1.7 dated 2018-11-05 and 1.8 dated 2019-03-17
DESCRIPTION | 8 +- MD5 | 30 +++++----- inst/include/accelerated.h | 32 +++++------ inst/include/bellman.h | 52 +++++++++--------- inst/include/fast.h | 54 +++++++++---------- inst/include/policy.h | 124 ++++++++++++++++++++++----------------------- inst/include/slow.h | 28 +++++----- man/AddDual.Rd | 1 man/AddDualBounds.Rd | 1 man/FastAddDual.Rd | 1 man/FastPathPolicy.Rd | 1 man/FiniteAddDual.Rd | 1 man/FullTestPolicy.Rd | 1 man/GetBounds.Rd | 1 man/PathPolicy.Rd | 1 man/TestPolicy.Rd | 1 16 files changed, 173 insertions(+), 164 deletions(-)
Title: High Performance Tools for Combinatorics and Computational
Mathematics
Description: Provides optimized functions implemented in C++ with 'Rcpp'
for solving problems in combinatorics and computational mathematics.
Utilizes parallel programming via 'RcppThread' for maximal performance.
Also makes use of the RMatrix class from the 'RcppParallel' library.
There are combination/permutation functions. Constraint parameters
allow for generation of all combinations/permutations of a vector
meeting specific criteria (e.g. finding all combinations such
that the sum is between two bounds). Capable of generating specific
combinations/permutations (e.g. retrieve only the nth lexicographical
result) which sets up nicely for parallelization as well as random
sampling. Gmp support permits exploration where the total number of
results is large (e.g. comboSample(10000, 500, n = 4)). Additionally,
there are several high performance number theoretic functions that
are useful for problems common in computational mathematics. Some of
these functions make use of the fast integer division library
'libdivide' by <http://ridiculousfish.com>. The primeSieve function
is based on the segmented sieve of Eratosthenes implementation by
Kim Walisch. It is also efficient for large numbers by using the
cache friendly improvements originally developed by Tomás Oliveira.
Finally, there is a prime counting function that implements Legendre's
formula based on the algorithm by Kim Walisch.
Author: Joseph Wood
Maintainer: Joseph Wood <jwood000@gmail.com>
Diff between RcppAlgos versions 2.2.0 dated 2018-09-14 and 2.3.0 dated 2019-03-17
RcppAlgos-2.2.0/RcppAlgos/inst/include/GetFacsUtils.h |only RcppAlgos-2.2.0/RcppAlgos/src/DivisorsContainer.cpp |only RcppAlgos-2.2.0/RcppAlgos/src/PrimesContainer.cpp |only RcppAlgos-2.2.0/RcppAlgos/src/SampleContainer.cpp |only RcppAlgos-2.3.0/RcppAlgos/DESCRIPTION | 36 RcppAlgos-2.3.0/RcppAlgos/MD5 | 122 - RcppAlgos-2.3.0/RcppAlgos/NAMESPACE | 1 RcppAlgos-2.3.0/RcppAlgos/R/Combinatorics.R | 50 RcppAlgos-2.3.0/RcppAlgos/R/NumberTheory.R | 45 RcppAlgos-2.3.0/RcppAlgos/R/RcppExports.R | 32 RcppAlgos-2.3.0/RcppAlgos/R/zzz.R |only RcppAlgos-2.3.0/RcppAlgos/README.md | 161 +- RcppAlgos-2.3.0/RcppAlgos/inst/NEWS.Rd | 9 RcppAlgos-2.3.0/RcppAlgos/inst/include/CleanConvert.h | 77 - RcppAlgos-2.3.0/RcppAlgos/inst/include/CombPermUtils.h | 29 RcppAlgos-2.3.0/RcppAlgos/inst/include/Combinations.h | 33 RcppAlgos-2.3.0/RcppAlgos/inst/include/Combinatorics.h |only RcppAlgos-2.3.0/RcppAlgos/inst/include/ComboResults.h | 16 RcppAlgos-2.3.0/RcppAlgos/inst/include/ConstraintsUtils.h | 44 RcppAlgos-2.3.0/RcppAlgos/inst/include/CountGmp.h | 12 RcppAlgos-2.3.0/RcppAlgos/inst/include/Eratosthenes.h |only RcppAlgos-2.3.0/RcppAlgos/inst/include/MotleyPrimes.h |only RcppAlgos-2.3.0/RcppAlgos/inst/include/NthResult.h | 14 RcppAlgos-2.3.0/RcppAlgos/inst/include/Permutations.h | 99 - RcppAlgos-2.3.0/RcppAlgos/inst/include/PermuteResults.h | 63 RcppAlgos-2.3.0/RcppAlgos/inst/include/PhiTinyLookup.h | 493 ++----- RcppAlgos-2.3.0/RcppAlgos/inst/include/PrimesPolRho.h | 3 RcppAlgos-2.3.0/RcppAlgos/inst/include/PrimesSegSieve.h | 6 RcppAlgos-2.3.0/RcppAlgos/inst/include/RMatrix.h |only RcppAlgos-2.3.0/RcppAlgos/inst/include/Wheel.h |only RcppAlgos-2.3.0/RcppAlgos/inst/include/importExportMPZ.h | 1 RcppAlgos-2.3.0/RcppAlgos/man/RcppAlgos-package.Rd | 4 RcppAlgos-2.3.0/RcppAlgos/man/combinatoricsGeneral.Rd | 74 - RcppAlgos-2.3.0/RcppAlgos/man/combinatoricsSample.Rd | 43 RcppAlgos-2.3.0/RcppAlgos/man/divisorsRcpp.Rd | 30 RcppAlgos-2.3.0/RcppAlgos/man/divisorsSieve.Rd | 19 RcppAlgos-2.3.0/RcppAlgos/man/eulerPhiSieve.Rd | 16 RcppAlgos-2.3.0/RcppAlgos/man/isPrimeRcpp.Rd | 12 RcppAlgos-2.3.0/RcppAlgos/man/numDivisorSieve.Rd | 18 RcppAlgos-2.3.0/RcppAlgos/man/primeCount.Rd | 10 RcppAlgos-2.3.0/RcppAlgos/man/primeFactorize.Rd | 12 RcppAlgos-2.3.0/RcppAlgos/man/primeFactorizeSieve.Rd | 16 RcppAlgos-2.3.0/RcppAlgos/man/primeSieve.Rd | 19 RcppAlgos-2.3.0/RcppAlgos/man/stdThreadMax.Rd |only RcppAlgos-2.3.0/RcppAlgos/src/CombPermUtils.cpp | 212 ++- RcppAlgos-2.3.0/RcppAlgos/src/Combinatorics.cpp | 666 ++++------ RcppAlgos-2.3.0/RcppAlgos/src/CountGmp.cpp | 167 +- RcppAlgos-2.3.0/RcppAlgos/src/DivNumSieve.cpp |only RcppAlgos-2.3.0/RcppAlgos/src/Makevars | 2 RcppAlgos-2.3.0/RcppAlgos/src/Makevars.win |only RcppAlgos-2.3.0/RcppAlgos/src/NthResult.cpp | 170 +- RcppAlgos-2.3.0/RcppAlgos/src/PollardRho.cpp | 460 ++++-- RcppAlgos-2.3.0/RcppAlgos/src/Primes.cpp |only RcppAlgos-2.3.0/RcppAlgos/src/RcppExports.cpp | 116 - RcppAlgos-2.3.0/RcppAlgos/src/SampCombPerm.cpp |only RcppAlgos-2.3.0/RcppAlgos/src/importExportMPZ.cpp | 41 RcppAlgos-2.3.0/RcppAlgos/tests/testthat/testCombPermResults.R | 177 +- RcppAlgos-2.3.0/RcppAlgos/tests/testthat/testComboGeneral.R | 44 RcppAlgos-2.3.0/RcppAlgos/tests/testthat/testDivisorsRcpp.R | 13 RcppAlgos-2.3.0/RcppAlgos/tests/testthat/testDivisorsSieve.R | 19 RcppAlgos-2.3.0/RcppAlgos/tests/testthat/testEulerPhiSieve.R | 27 RcppAlgos-2.3.0/RcppAlgos/tests/testthat/testIsPrimeRcpp.R | 15 RcppAlgos-2.3.0/RcppAlgos/tests/testthat/testNumDivisorSieve.R | 8 RcppAlgos-2.3.0/RcppAlgos/tests/testthat/testParallel.R |only RcppAlgos-2.3.0/RcppAlgos/tests/testthat/testPermuteGeneral.R | 28 RcppAlgos-2.3.0/RcppAlgos/tests/testthat/testPrimeCount.R | 8 RcppAlgos-2.3.0/RcppAlgos/tests/testthat/testPrimeFactorize.R | 11 RcppAlgos-2.3.0/RcppAlgos/tests/testthat/testPrimeFactorizeSieve.R | 15 RcppAlgos-2.3.0/RcppAlgos/tests/testthat/testPrimeSieve.R | 29 RcppAlgos-2.3.0/RcppAlgos/tests/testthat/testSample.R | 157 +- 70 files changed, 2282 insertions(+), 1722 deletions(-)
Title: Completing Ranks
Description: Functions for completing and recalculating rankings and sorting.
Author: Jim Lemon <drjimlemon@gmail.com>,
Maintainer: Jim Lemon <drjimlemon@gmail.com>
Diff between crank versions 1.1 dated 2015-10-20 and 1.1-1 dated 2019-03-17
DESCRIPTION | 10 ++--- MD5 | 13 ++++--- NAMESPACE | 4 +- NEWS | 5 ++ R/page.test.R | 82 ++++++++++++++++++++++--------------------------- R/spsort.R |only man/elrepos.Rd |only man/page.trend.test.Rd | 9 ++--- man/spsort.Rd |only 9 files changed, 64 insertions(+), 59 deletions(-)
Title: Download Public Domain Works from Wikisource
Description: Download public domain works from Wikisource <https://wikisource.org/>, a free library from the Wikimedia Foundation project.
Author: Félix Luginbuhl [aut, cre]
Maintainer: Félix Luginbuhl <felix.luginbuhl@protonmail.ch>
Diff between wikisourcer versions 0.1.2 dated 2018-11-20 and 0.1.3 dated 2019-03-17
DESCRIPTION | 14 +- MD5 | 23 ++- NAMESPACE | 10 - NEWS.md |only R/wikisource_book.R | 25 ++-- R/wikisource_page.R | 93 ++++++++-------- README.md | 38 ++---- inst/doc/wikisourcer.R | 26 ++-- inst/doc/wikisourcer.Rmd | 50 ++++---- inst/doc/wikisourcer.html | 266 ++++++++++++++++++++++++---------------------- man/wikisource_book.Rd | 6 - man/wikisource_page.Rd | 8 - vignettes/wikisourcer.Rmd | 50 ++++---- 13 files changed, 308 insertions(+), 301 deletions(-)
Title: Matrix Reconstruction from a Few Entries
Description: Matrix reconstruction, also known as matrix completion, is
the task of inferring missing entries of a partially observed matrix.
This package provides a method called OptSpace,
which was proposed by Keshavan, R.H., Oh, S., and Montanari, A. (2009)
<doi:10.1109/ISIT.2009.5205567> for a case under low-rank assumption.
Author: Kisung You [aut, cre] (<https://orcid.org/0000-0002-8584-459X>)
Maintainer: Kisung You <kyou@nd.edu>
Diff between ROptSpace versions 0.2.0 dated 2018-09-20 and 0.2.1 dated 2019-03-17
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/zzz.R | 4 ++-- build/partial.rdb |binary 4 files changed, 9 insertions(+), 9 deletions(-)
Title: Seamless R and C++ Integration
Description: The 'Rcpp' package provides R functions as well as C++ classes which
offer a seamless integration of R and C++. Many R data types and objects can be
mapped back and forth to C++ equivalents which facilitates both writing of new
code as well as easier integration of third-party libraries. Documentation
about 'Rcpp' is provided by several vignettes included in this package, via the
'Rcpp Gallery' site at <http://gallery.rcpp.org>, the paper by Eddelbuettel and
Francois (2011, <doi:10.18637/jss.v040.i08>), the book by Eddelbuettel (2013,
<doi:10.1007/978-1-4614-6868-4>) and the paper by Eddelbuettel and Balamuta (2018,
<doi:10.1080/00031305.2017.1375990>); see 'citation("Rcpp")' for details.
Author: Dirk Eddelbuettel, Romain Francois, JJ Allaire, Kevin Ushey, Qiang Kou,
Nathan Russell, Douglas Bates and John Chambers
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between Rcpp versions 1.0.0 dated 2018-11-07 and 1.0.1 dated 2019-03-17
Rcpp-1.0.0/Rcpp/inst/README |only Rcpp-1.0.0/Rcpp/inst/THANKS |only Rcpp-1.0.1/Rcpp/ChangeLog | 88 Rcpp-1.0.1/Rcpp/DESCRIPTION | 8 Rcpp-1.0.1/Rcpp/MD5 | 72 Rcpp-1.0.1/Rcpp/R/Attributes.R | 16 Rcpp-1.0.1/Rcpp/build/vignette.rds |binary Rcpp-1.0.1/Rcpp/inst/NEWS.Rd | 40 Rcpp-1.0.1/Rcpp/inst/bib/Rcpp.bib | 4 Rcpp-1.0.1/Rcpp/inst/doc/Rcpp-FAQ.pdf |binary Rcpp-1.0.1/Rcpp/inst/doc/Rcpp-attributes.pdf |binary Rcpp-1.0.1/Rcpp/inst/doc/Rcpp-extending.pdf |binary Rcpp-1.0.1/Rcpp/inst/doc/Rcpp-introduction.pdf |binary Rcpp-1.0.1/Rcpp/inst/doc/Rcpp-jss-2011.pdf |binary Rcpp-1.0.1/Rcpp/inst/doc/Rcpp-modules.R | 6 Rcpp-1.0.1/Rcpp/inst/doc/Rcpp-modules.Rmd | 66 Rcpp-1.0.1/Rcpp/inst/doc/Rcpp-modules.pdf |binary Rcpp-1.0.1/Rcpp/inst/doc/Rcpp-package.pdf |binary Rcpp-1.0.1/Rcpp/inst/doc/Rcpp-quickref.Rmd | 13 Rcpp-1.0.1/Rcpp/inst/doc/Rcpp-quickref.pdf |binary Rcpp-1.0.1/Rcpp/inst/doc/Rcpp-sugar.pdf |binary Rcpp-1.0.1/Rcpp/inst/doc/Rcpp.bib | 4 Rcpp-1.0.1/Rcpp/inst/include/Rcpp/api/meat/proxy.h | 2 Rcpp-1.0.1/Rcpp/inst/include/Rcpp/clone.h | 5 Rcpp-1.0.1/Rcpp/inst/include/Rcpp/config.h | 4 Rcpp-1.0.1/Rcpp/inst/include/Rcpp/macros/macros.h | 12 Rcpp-1.0.1/Rcpp/inst/include/Rcpp/protection/Shelter.h | 16 Rcpp-1.0.1/Rcpp/inst/include/Rcpp/proxy/AttributeProxy.h | 2 Rcpp-1.0.1/Rcpp/inst/include/Rcpp/proxy/NamesProxy.h | 8 Rcpp-1.0.1/Rcpp/inst/include/Rcpp/sugar/functions/cbind.h | 1660 +++++++------- Rcpp-1.0.1/Rcpp/inst/include/Rcpp/vector/Matrix.h | 2 Rcpp-1.0.1/Rcpp/inst/include/Rcpp/vector/Subsetter.h | 70 Rcpp-1.0.1/Rcpp/inst/include/Rcpp/vector/Vector.h | 9 Rcpp-1.0.1/Rcpp/inst/unitTests/runit.sugar.R | 5 Rcpp-1.0.1/Rcpp/vignettes/Rcpp-modules.Rmd | 66 Rcpp-1.0.1/Rcpp/vignettes/Rcpp-quickref.Rmd | 13 Rcpp-1.0.1/Rcpp/vignettes/Rcpp.bib | 4 Rcpp-1.0.1/Rcpp/vignettes/figures/bootstrap.pdf |binary 38 files changed, 1245 insertions(+), 950 deletions(-)
Title: Functions for Working with Danish CPR Numbers
Description: Calculate date of birth, age, and gender, and generate anonymous
sequence numbers from CPR numbers.
<https://en.wikipedia.org/wiki/Personal_identification_number_(Denmark)>.
Author: Jacob Anhoej
Maintainer: Jacob Anhøj <jacob@anhoej.net>
Diff between cprr versions 0.1.1 dated 2017-09-07 and 0.2.0 dated 2019-03-17
DESCRIPTION | 9 +++---- MD5 | 7 +++-- NEWS |only R/cprr.R | 14 +++++++---- README.md | 76 +++++++++++++++++++++++++++++++----------------------------- 5 files changed, 59 insertions(+), 47 deletions(-)
Title: Analyses of Phylogenetics and Evolution
Description: Functions for reading, writing, plotting, and manipulating phylogenetic trees, analyses of comparative data in a phylogenetic framework, ancestral character analyses, analyses of diversification and macroevolution, computing distances from DNA sequences, reading and writing nucleotide sequences as well as importing from BioConductor, and several tools such as Mantel's test, generalized skyline plots, graphical exploration of phylogenetic data (alex, trex, kronoviz), estimation of absolute evolutionary rates and clock-like trees using mean path lengths and penalized likelihood, dating trees with non-contemporaneous sequences, translating DNA into AA sequences, and assessing sequence alignments. Phylogeny estimation can be done with the NJ, BIONJ, ME, MVR, SDM, and triangle methods, and several methods handling incomplete distance matrices (NJ*, BIONJ*, MVR*, and the corresponding triangle method). Some functions call external applications (PhyML, Clustal, T-Coffee, Muscle) whose results are returned into R.
Author: Emmanuel Paradis [aut, cre, cph]
(<https://orcid.org/0000-0003-3092-2199>),
Simon Blomberg [aut, cph] (<https://orcid.org/0000-0003-1062-0839>),
Ben Bolker [aut, cph] (<https://orcid.org/0000-0002-2127-0443>),
Joseph Brown [aut, cph],
Julien Claude [aut, cph],
Hoa Sien Cuong [aut, cph],
Richard Desper [aut, cph],
Gilles Didier [aut, cph],
Benoit Durand [aut, cph],
Julien Dutheil [aut, cph],
RJ Ewing [aut, cph],
Olivier Gascuel [aut, cph],
Thomas Guillerme [aut, cph],
Christoph Heibl [aut, cph],
Anthony Ives [aut, cph],
Bradley Jones [aut, cph],
Franz Krah [aut, cph],
Daniel Lawson [aut, cph],
Vincent Lefort [aut, cph],
Pierre Legendre [aut, cph] (<https://orcid.org/0000-0002-3838-3305>),
Jim Lemon [aut, cph],
Eric Marcon [aut, cph],
Rosemary McCloskey [aut, cph],
Johan Nylander [aut, cph],
Rainer Opgen-Rhein [aut, cph],
Andrei-Alin Popescu [aut, cph],
Manuela Royer-Carenzi [aut, cph],
Klaus Schliep [aut, cph],
Korbinian Strimmer [aut, cph],
Damien de Vienne [aut, cph]
Maintainer: Emmanuel Paradis <Emmanuel.Paradis@ird.fr>
Diff between ape versions 5.2 dated 2018-09-24 and 5.3 dated 2019-03-17
DESCRIPTION | 8 +- MD5 | 46 +++++++------ NAMESPACE | 79 ++++++++++++++++++++++- R/DNA.R | 162 +++++++++++++++++++++++++++++++++++++++++++++++-- R/mantel.test.R | 15 +--- R/plot.popsize.R | 79 +++++++++-------------- R/summary.phylo.R | 6 - R/write.tree.R | 23 +++++- build/vignette.rds |binary inst/CITATION | 6 - inst/doc/MoranI.pdf |binary man/all.equal.phylo.Rd | 2 man/alview.Rd | 13 +++ man/ape-internal.Rd | 83 +------------------------ man/ape-package.Rd | 6 + man/bind.tree.Rd | 3 man/checkLabel.Rd |only man/dnds.Rd |only man/label2table.Rd | 3 man/makeLabel.Rd | 2 man/makeNodeLabel.Rd | 3 man/mcmc.popsize.Rd | 19 +++-- man/mixedFontLabel.Rd | 3 man/root.Rd | 4 - man/updateLabel.Rd | 3 25 files changed, 369 insertions(+), 199 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-12-03 0.1.0
Title: Utilities for Generating SQL Queries from Model Objects
Description: Provides utilities for generating SQL queries (particularly CREATE
TABLE statements) from R model objects. The most important use case is
generating SQL to score a generalized linear model or related model
represented as an R object, in which case the package handles parsing
formula operators and including the model's response function.
Author: William Brannon [aut, cre]
Maintainer: William Brannon <wwbrannon@email.wm.edu>
Diff between sqlscore versions 0.1.3 dated 2018-04-29 and 0.1.4 dated 2019-03-17
DESCRIPTION | 10 +++++----- MD5 | 22 +++++++++++----------- NEWS.md | 7 ++++++- R/sqlscore.R | 33 ++++++++++++++++++++++++--------- README.md | 13 +++---------- man/create_statement.Rd | 10 ++++++++-- man/select_statement.Rd | 10 ++++++++-- tests/testthat/test-extract_coef.R | 6 +++--- tests/testthat/test-extract_factors.R | 4 ++-- tests/testthat/test-extract_offsets.R | 2 +- tests/testthat/test-linpred.R | 6 +++--- tests/testthat/test-score_expression.R | 4 ++-- 12 files changed, 76 insertions(+), 51 deletions(-)
Title: Labels Points Inside Polygons
Description: Labels longitudinal and latitudinal coordinates located inside a polygon.
For a singular polygon, the label is a logical vector of TRUE and FALSE values. For multiple polygons, the label is a character vector based on the names of each polygon.
The package is designed to work with both sf and SpatialPolygonsDataFrame objects.
Author: Cristian E. Nuno [aut, cre]
Maintainer: Cristian E. Nuno <cenuno@syr.edu>
Diff between pointdexter versions 0.1.0 dated 2019-01-30 and 0.1.1 dated 2019-03-17
DESCRIPTION | 10 ++++----- MD5 | 28 ++++++++++++++----------- NAMESPACE | 2 + NEWS.md | 7 ++++++ R/02_label_points_within_polygons.R | 33 ++++++++++++++++++------------ R/pointdexter.R | 2 - data/census_tracts_sf.rda |only data/census_tracts_spdf.rda |only data/datalist | 2 + inst/doc/introduction-to-pointdexter.html | 6 ++--- man/census_tracts_sf.Rd |only man/census_tracts_spdf.Rd |only man/city_boundary_sf.Rd | 7 +++++- man/city_boundary_spdf.Rd | 2 - man/community_areas_spdf.Rd | 9 -------- man/figures/README-visualize-1.png |binary man/pointdexter.Rd | 2 - 17 files changed, 64 insertions(+), 46 deletions(-)
Title: Automate Data Exploration and Treatment
Description: Automated data exploration process for analytic tasks and predictive modeling, so
that users could focus on understanding data and extracting insights. The package scans and
analyzes each variable, and visualizes them with typical graphical techniques. Common
data processing methods are also available to treat and format data.
Author: Boxuan Cui [aut, cre]
Maintainer: Boxuan Cui <boxuancui@gmail.com>
Diff between DataExplorer versions 0.7.0 dated 2018-10-19 and 0.8.0 dated 2019-03-17
DESCRIPTION | 21 MD5 | 118 + NAMESPACE | 4 NEWS.md | 117 - R/configure_report.r |only R/create_report.r | 127 - R/drop_columns.r | 4 R/internal.r | 4 R/plot.r | 8 R/plot_bar.r | 127 + R/plot_boxplot.r | 5 R/plot_correlation.r | 21 R/plot_density.r | 46 R/plot_histogram.r | 43 R/plot_intro.r | 75 - R/plot_missing.r | 60 R/plot_prcomp.r | 162 +- R/profile_missing.r | 6 R/split_columns.r | 15 R/update_columns.r |only README.md | 40 build/vignette.rds |binary inst/doc/dataexplorer-intro.R | 161 +- inst/doc/dataexplorer-intro.Rmd | 197 +-- inst/doc/dataexplorer-intro.html | 1765 ++++----------------------- inst/rmd_template/d3.min.js | 10 inst/rmd_template/report.rmd | 16 man/configure_report.Rd |only man/create_report.Rd | 66 - man/dot-getAllMissing.Rd | 1 man/dot-getPageLayout.Rd | 1 man/dot-ignoreCat.Rd | 1 man/dot-lapply.Rd | 1 man/drop_columns.Rd | 2 man/figures/README-plot-bar-1.png |only man/figures/README-plot-bar-prepare-1.png |only man/figures/README-plot-bar-prepare-2.png |only man/figures/README-plot-bar-price-1.png |only man/figures/README-plot-density-1.png |only man/figures/README-plot-histogram-1.png |only man/figures/README-plot-intro-1.png |only man/figures/README-plot-missing-1.png |only man/figures/README-plot-qq-1.png |only man/figures/README-plot-qq-cut-1.png |only man/figures/README-plot_boxplot-1.png |only man/figures/README-plot_boxplot-2.png |only man/figures/README-plot_correlation-1.png |only man/figures/README-plot_prcomp-1.png |only man/figures/README-plot_prcomp-2.png |only man/figures/README-plot_scatterplot-1.png |only man/figures/logo.png |binary man/plot_bar.Rd | 11 man/plot_boxplot.Rd | 8 man/plot_correlation.Rd | 9 man/plot_density.Rd | 18 man/plot_histogram.Rd | 13 man/plot_intro.Rd | 6 man/plot_missing.Rd | 17 man/plot_prcomp.Rd | 14 man/split_columns.Rd | 4 man/update_columns.Rd |only tests/testthat/test-configure-report.r |only tests/testthat/test-create-report.r | 8 tests/testthat/test-internal.r | 1 tests/testthat/test-plot-bar.r | 24 tests/testthat/test-plot-histogram-density.r | 26 tests/testthat/test-plot-prcomp.r | 4 tests/testthat/test-profile-missing.r | 6 tests/testthat/test-split-columns.r | 23 tests/testthat/test-update-columns.r |only vignettes/dataexplorer-intro.Rmd | 197 +-- 71 files changed, 1373 insertions(+), 2240 deletions(-)