Title: Quick Access to Homologene and Gene Annotation Updates
Description: A wrapper for the homologene database by the National Center for
Biotechnology Information ('NCBI'). It allows searching for gene homologs across
species. Data in this package can be found at <ftp://ftp.ncbi.nih.gov/pub/HomoloGene/build68/>.
The package also includes an updated version of the homologene database where
gene identifiers and symbols are replaced with their latest (at the time of
submission) version and functions to fetch latest annotation data to keep updated.
Author: Ogan Mancarci [aut, cre],
Leon French [ctb]
Maintainer: Ogan Mancarci <ogan.mancarci@gmail.com>
Diff between homologene versions 1.1.68 dated 2018-01-18 and 1.4.68.19.3.27 dated 2019-03-28
DESCRIPTION | 18 ++- LICENSE | 4 MD5 | 48 ++++++---- NAMESPACE | 10 ++ NEWS.md |only R/autoTranslate.R |only R/geneHistory.R |only R/homologene.R | 25 +++-- R/homologeneData2.R |only R/import.R | 16 +++ R/updateHomologene.R |only README.md | 179 +++++++++++++++++++++++++++++++++------ data/datalist |only data/homologeneData.rda |binary data/homologeneData2.rda |only data/homologeneVersion.rda |binary data/taxData.rda |binary man/autoTranslate.Rd |only man/getGeneHistory.Rd |only man/getGeneInfo.Rd |only man/getHomologene.Rd |only man/homologene.Rd | 4 man/homologeneData.Rd | 4 man/homologeneData2.Rd |only man/human2mouse.Rd | 4 man/mouse2human.Rd | 4 man/reexports.Rd | 4 man/taxData.Rd | 2 man/updateHomologene.Rd |only man/updateIDs.Rd |only tests/testthat/test_homologene.R | 37 ++++++-- tests/testthat/test_utilities.R |only tests/testthat/testfiles |only 33 files changed, 290 insertions(+), 69 deletions(-)
Title: Health-Economic Simulation Modeling and Decision Analysis
Description: Parameterize, simulate, and analyze health-economic simulation
models. Supports N-state partitioned survival models (Glasziou et al. 1990)
<doi:10.1002/sim.4780091106> and continuous time state transition models
(Siebert et al. 2012) <doi:10.1016/j.jval.2012.06.014> parameterized using
survival or multi-state modeling (de Wreede et al. 2011, Jackson 2015)
<doi:10.18637/jss.v038.i07>, <10.18637/jss.v070.i08>. Decision uncertainty
from a cost-effectiveness analysis is quantified with standard graphical and
tabular summaries of a probabilistic sensitivity analysis (Claxton et al. 2005,
Barton et al. 2008) <doi:10.1002/hec.985>, <doi:10.1111/j.1524-4733.2008.00358.x>.
Simulation code written in C++ to boost performance.
Author: Devin Incerti [aut, cre],
Jeroen P. Jansen [aut]
Maintainer: Devin Incerti <devin.incerti@gmail.com>
Diff between hesim versions 0.1.0 dated 2017-12-03 and 0.2.0 dated 2019-03-28
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Title: Bayesian Additive Regression Trees
Description: Bayesian Additive Regression Trees (BART) provide flexible nonparametric modeling of covariates for continuous, binary, categorical and time-to-event outcomes. For more information on BART, see Chipman, George and McCulloch (2010) <doi:10.1214/09-AOAS285> and Sparapani, Logan, McCulloch and Laud (2016) <doi:10.1002/sim.6893>.
Author: Robert McCulloch [aut],
Rodney Sparapani [aut, cre],
Robert Gramacy [aut],
Charles Spanbauer [aut],
Matthew Pratola [aut],
Martyn Plummer [ctb],
Nicky Best [ctb],
Kate Cowles [ctb],
Karen Vines [ctb]
Maintainer: Rodney Sparapani <rsparapa@mcw.edu>
Diff between BART versions 2.2 dated 2019-01-23 and 2.3 dated 2019-03-28
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Title: R Graphics Device using Cairo Graphics Library for Creating
High-Quality Bitmap (PNG, JPEG, TIFF), Vector (PDF, SVG,
PostScript) and Display (X11 and Win32) Output
Description: R graphics device using cairographics library that can be used to create high-quality vector (PDF, PostScript and SVG) and bitmap output (PNG,JPEG,TIFF), and high-quality rendering in displays (X11 and Win32). Since it uses the same back-end for all output, copying across formats is WYSIWYG. Files are created without the dependence on X11 or other external programs. This device supports alpha channel (semi-transparent drawing) and resulting images can contain transparent and semi-transparent regions. It is ideal for use in server environments (file output) and as a replacement for other devices that don't have Cairo's capabilities such as alpha support or anti-aliasing. Backends are modular such that any subset of backends is supported.
Author: Simon Urbanek <Simon.Urbanek@r-project.org>, Jeffrey Horner <jeff.horner@vanderbilt.edu>
Maintainer: Simon Urbanek <Simon.Urbanek@r-project.org>
Diff between Cairo versions 1.5-9 dated 2015-09-26 and 1.5-10 dated 2019-03-28
DESCRIPTION | 14 +++++++------- MD5 | 19 ++++++++++--------- NEWS | 10 ++++++++++ R/Cairo.R | 3 ++- configure | 20 +++++++++++++++++++- configure.ac | 33 +++++++++++++++++---------------- man/Cairo.Rd | 4 +++- src/Rapi.h |only src/cairogd.h | 2 +- src/cairotalk.c | 30 ++++++++++++++++++++++++++++++ src/xlib-backend.c | 6 +++--- 11 files changed, 102 insertions(+), 39 deletions(-)
Title: Thermoluminescence Glow Curve Deconvolution
Description: Deconvolving thermoluminescence glow curves according to various
kinetic models (first-order, second-order, general-order, and mixed-order) using
a modified Levenberg-Marquardt algorithm. It provides the possibility of setting
constraints or fixing any of parameters. It offers an interactive way to initialize
parameters by clicking with a mouse on a plot at positions where peak maxima should
be located. The optimal estimate is obtained by "trial-and-error". It also provides
routines for simulating first-order, second-order, and general-order glow peaks.
Author: Jun Peng [aut, cre],
John Burkardt [ctb],
Jorge More [ctb],
Burton Garbow [ctb],
Kenneth Hillstrom [ctb],
Linda R. Petzold [ctb],
Alan C. Hindmarsh [ctb],
R. Woodrow Setzer [ctb],
Andrew Horchler [ctb],
William Cody [ctb]
Maintainer: Jun Peng <pengjun10@mails.ucas.ac.cn>
Diff between tgcd versions 2.0 dated 2016-09-06 and 2.1 dated 2019-03-28
tgcd-2.0/tgcd/src/calcD.f90 |only tgcd-2.0/tgcd/src/tgcd.f90 |only tgcd-2.0/tgcd/src/tgcd1.f90 |only tgcd-2.1/tgcd/DESCRIPTION | 49 - tgcd-2.1/tgcd/MD5 | 69 +- tgcd-2.1/tgcd/NAMESPACE | 11 tgcd-2.1/tgcd/R/savgol.R |only tgcd-2.1/tgcd/R/tgcd.R | 1005 +++++++++++++++++++++++------------- tgcd-2.1/tgcd/data/Kitis.RData |only tgcd-2.1/tgcd/data/Refglow.RData |binary tgcd-2.1/tgcd/inst/CITATION | 2 tgcd-2.1/tgcd/man/Kitis.Rd |only tgcd-2.1/tgcd/man/Refglow.Rd | 11 tgcd-2.1/tgcd/man/savgol.Rd |only tgcd-2.1/tgcd/man/simPeak.Rd | 14 tgcd-2.1/tgcd/man/simqOTOR.Rd | 12 tgcd-2.1/tgcd/man/tgcd-package.Rd | 10 tgcd-2.1/tgcd/man/tgcd.Rd | 423 +++++++++++---- tgcd-2.1/tgcd/src/calcAm.f90 |only tgcd-2.1/tgcd/src/calcFct.f90 |only tgcd-2.1/tgcd/src/calcLv.f90 |only tgcd-2.1/tgcd/src/calcMaty_frt1.f90 |only tgcd-2.1/tgcd/src/calcMaty_frt2.f90 |only tgcd-2.1/tgcd/src/calcMaty_frt3.f90 |only tgcd-2.1/tgcd/src/calcMaty_gnr1.f90 |only tgcd-2.1/tgcd/src/calcMaty_gnr2.f90 |only tgcd-2.1/tgcd/src/calcMaty_gnr3.f90 |only tgcd-2.1/tgcd/src/calcMaty_lw.f90 |only tgcd-2.1/tgcd/src/calcMaty_mix1.f90 |only tgcd-2.1/tgcd/src/calcMaty_mix2.f90 |only tgcd-2.1/tgcd/src/calcMaty_mix3.f90 |only tgcd-2.1/tgcd/src/calcMaty_pdf1.f90 |only tgcd-2.1/tgcd/src/calcMaty_pdf2.f90 |only tgcd-2.1/tgcd/src/calcShape.f90 |only tgcd-2.1/tgcd/src/comb_next.f90 |only tgcd-2.1/tgcd/src/hpSort.f90 | 7 tgcd-2.1/tgcd/src/lmtl_all.f90 |only tgcd-2.1/tgcd/src/lubksb.f90 |only tgcd-2.1/tgcd/src/ludcmp.f90 |only tgcd-2.1/tgcd/src/minpack.f90 | 31 - tgcd-2.1/tgcd/src/savgol.f90 |only tgcd-2.1/tgcd/src/savgol_filter.f90 |only tgcd-2.1/tgcd/src/tgcd_drive.f90 |only tgcd-2.1/tgcd/src/tgcd_frt.f90 |only tgcd-2.1/tgcd/src/tgcd_init.c |only tgcd-2.1/tgcd/src/tgcd_nonfrt.f90 |only tgcd-2.1/tgcd/src/tgcfunc_frt1.f90 |only tgcd-2.1/tgcd/src/tgcfunc_frt2.f90 |only tgcd-2.1/tgcd/src/tgcfunc_frt3.f90 |only tgcd-2.1/tgcd/src/tgcfunc_gnr1.f90 |only tgcd-2.1/tgcd/src/tgcfunc_gnr2.f90 |only tgcd-2.1/tgcd/src/tgcfunc_gnr3.f90 |only tgcd-2.1/tgcd/src/tgcfunc_lw.f90 |only tgcd-2.1/tgcd/src/tgcfunc_mix1.f90 |only tgcd-2.1/tgcd/src/tgcfunc_mix2.f90 |only tgcd-2.1/tgcd/src/tgcfunc_mix3.f90 |only tgcd-2.1/tgcd/src/tgcfunc_pdf1.f90 |only tgcd-2.1/tgcd/src/tgcfunc_pdf2.f90 |only 58 files changed, 1104 insertions(+), 540 deletions(-)
Title: Sparse Arrays and Multivariate Polynomials
Description: Sparse arrays interpreted as multivariate polynomials.
Author: Robin K. S. Hankin [aut, cre] (<https://orcid.org/0000-0001-5982-0415>)
Maintainer: Robin K. S. Hankin <hankin.robin@gmail.com>
Diff between spray versions 1.0-3 dated 2017-05-25 and 1.0-5 dated 2019-03-28
DESCRIPTION | 12 ++-- MD5 | 24 ++++----- R/spray.R | 112 ++++++++++++++++++++++++++++-------------- build/vignette.rds |binary inst/doc/spray.R | 16 +++--- inst/doc/spray.Rnw | 30 ++++++----- inst/doc/spray.pdf |binary man/knight.Rd |only man/spray_cpp.Rd | 1 man/spray_missing_accessor.Rd |only src/spray_ops.cpp | 19 +++++-- tests/aaa.R | 3 + vignettes/spray.Rnw | 30 ++++++----- vignettes/spray.bib | 9 +++ 14 files changed, 165 insertions(+), 91 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-03-26 0.1.1
Title: R Interface to Global Biotic Interactions
Description: A programmatic interface to the web service methods
provided by Global Biotic Interactions (GloBI). GloBI provides
access to spatial-temporal species interaction records from
sources all over the world. rglobi provides methods to search
species interactions by location, interaction type, and
taxonomic name. In addition, it supports Cypher, a graph query
language, to allow for executing custom queries on the GloBI
aggregate species interaction data set.
Author: Jorrit Poelen [aut, cre],
Stephen Gosnell [aut],
Sergey Slyusarev [aut]
Maintainer: Jorrit Poelen <jhpoelen@xs4all.nl>
Diff between rglobi versions 0.2.17 dated 2018-12-14 and 0.2.18 dated 2019-03-28
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NEWS | 9 +++++++++ R/rglobi.R | 6 ++++-- build/vignette.rds |binary 5 files changed, 21 insertions(+), 10 deletions(-)
Title: Interface to 'MLflow'
Description: R interface to 'MLflow', open source platform for the complete machine
learning life cycle, see <https://mlflow.org/>. This package supports installing
'MLflow', tracking experiments, creating and running projects, and saving and
serving models.
Author: Matei Zaharia [aut, cre],
Javier Luraschi [aut],
Kevin Kuo [aut] (<https://orcid.org/0000-0001-7803-7901>),
RStudio [cph]
Maintainer: Matei Zaharia <matei@databricks.com>
Diff between mlflow versions 0.8.0 dated 2018-11-12 and 0.9.0 dated 2019-03-28
DESCRIPTION | 14 +- MD5 | 49 ++++----- NAMESPACE | 10 + R/cli.R | 22 ++-- R/databricks-utils.R |only R/install.R | 6 - R/model-flavor.R | 4 R/model-keras.R | 4 R/model-serve.R | 13 +- R/model.R | 24 ++-- R/project-param.R | 10 - R/project-run.R | 6 - R/project-snapshot.R | 2 R/tracking-client.R | 176 +++++++++++++++++++++++++-------- R/tracking-fluent.R | 45 +++++--- R/tracking-globals.R | 4 R/tracking-rest.R | 72 ++++++------- R/tracking-server.R | 11 -- R/tracking-ui.R | 6 - R/tracking-utils.R | 8 + man/mlflow_cli.Rd | 7 - man/mlflow_client_create_run.Rd | 4 man/mlflow_install.Rd | 2 tests/testthat.R | 1 tests/testthat/test-client.R |only tests/testthat/test-databricks-utils.R |only tests/testthat/test_keras_model.R | 8 - 27 files changed, 321 insertions(+), 187 deletions(-)
Title: Markov Model for the Online Multi-Channel Attribution Problem
Description: Advertisers use a variety of online marketing channels to reach consumers and they want to know the degree each channel contributes to their marketing success. This is called the online multi-channel attribution problem. This package contains a probabilistic algorithm for the attribution problem. The model uses a k-order Markov representation to identify structural correlations in the customer journey data. The package also contains three heuristic algorithms (first-touch, last-touch and linear-touch approach) for the same problem. The algorithms are implemented in C++.
Author: Davide Altomare, David Loris
Maintainer: Davide Altomare <davide.altomare@gmail.com>
Diff between ChannelAttribution versions 1.14 dated 2018-08-20 and 1.15 dated 2019-03-28
DESCRIPTION | 10 MD5 | 24 R/ChannelAttribution.R | 156 ++- man/ChannelAttribution-package.Rd | 104 +- man/Data.Rd | 34 man/auto_markov_model.Rd |only man/choose_order.Rd |only man/heuristic_models.Rd | 103 +- man/markov_model.Rd | 121 +- man/markov_model_mp.Rd |only man/transition_matrix.Rd |only src/ChannelAttribution.cpp | 1601 +++++++++++++++++++++++++++++++++++++- src/ChannelAttribution.h | 4 src/Makevars | 4 src/Makevars.win | 3 15 files changed, 1910 insertions(+), 254 deletions(-)
More information about ChannelAttribution at CRAN
Permanent link
Title: Less Code, More Results
Description: Each function accomplishes the work of several or more standard R functions. For example, two function calls, Read() and CountAll(), read the data and generate summary statistics for all variables in the data frame, plus histograms and bar charts as appropriate. Other functions provide for descriptive statistics, a comprehensive regression analysis, analysis of variance and t-test, plotting including the introduced here Violin/Box/Scatter plot for a numerical variable, bar chart, histogram, box plot, density curves, calibrated power curve, reading multiple data formats with the same function call, variable labels, color themes, Trellis graphics and a built-in help system. Also includes a confirmatory factor analysis of multiple indicator measurement models, pedagogical routines for data simulation such as for the Central Limit Theorem, and generation and rendering of R markdown instructions for interpretative output.
Author: David W. Gerbing, The School of Business, Portland State University
Maintainer: David W. Gerbing <gerbing@pdx.edu>
Diff between lessR versions 3.8.1 dated 2019-01-10 and 3.8.2 dated 2019-03-28
DESCRIPTION | 12 - MD5 | 121 ++++++------ NAMESPACE | 9 NEWS | 103 ++++++++++ R/ANOVA.R | 2 R/BarChart.R | 237 ++++++++++++++++++------- R/Density.R | 2 R/Help.R | 88 ++++----- R/Histogram.R | 26 +- R/LineChart.R | 2 R/Logit.R | 2 R/Merge.R | 10 - R/PieChart.R | 6 R/Plot.R | 351 +++++++++++++++++++++++-------------- R/Read.R | 272 ++++++++--------------------- R/Regression.R | 43 +++- R/Subset.R | 8 R/SummaryStats.R | 36 +++ R/Transform.R | 4 R/VariableLabels.R | 34 +-- R/Write.R | 81 +++++--- R/bar.zlattice.R | 4 R/bc.data.frame.R | 4 R/bc.zmain.R | 170 ++++++++++-------- R/details.R | 18 - R/dpmat.zmain.R | 17 + R/factors.R | 10 - R/getColors.R | 8 R/hst.zmain.R | 2 R/label.R | 26 +- R/param.zold.R | 48 +++-- R/plt.by.zlegend.R | 2 R/plt.zbad.R | 6 R/plt.zlattice.R | 14 + R/plt.zlegend.R | 15 - R/plt.zmain.R | 450 +++++++++++++++++++++++++++++------------------- R/plt.ztxt.R | 58 +++--- R/reg.zRmd.R | 22 +- R/ss.zfactor.R | 17 + R/ss.znumeric.R | 1 R/style.R | 40 +--- R/style.zshow.R | 2 R/ttest.R | 26 +- R/wrt.x.R |only R/zzz.R | 152 +++++++++------- data/dataEmployee.rda |binary data/dataStockPrice.rda |binary man/BarChart.Rd | 88 +++++++-- man/Histogram.Rd | 43 ++-- man/Plot.Rd | 107 ++++++----- man/Read.Rd | 36 +-- man/Recode.Rd | 2 man/Regression.Rd | 20 +- man/VariableLabels.Rd | 19 +- man/Write.Rd | 22 +- man/dataStockPrice.Rd | 6 man/details.Rd | 16 - man/factors.Rd | 8 man/getColors.Rd | 13 + man/label.Rd | 2 man/style.Rd | 3 man/ttest.Rd | 15 + 62 files changed, 1745 insertions(+), 1216 deletions(-)
Title: Setup, Run and Analyze 'NetLogo' Model Simulations from 'R' via
'XML'
Description: The purpose of this package is to provide tools to setup, run and analyze 'NetLogo' (<https://ccl.northwestern.edu/netlogo/>) model simulations in 'R'.
'nlrx' experiments use a similar structure as 'NetLogos' Behavior Space experiments.
However, 'nlrx' offers more flexibility and additional tools for running and analyzing complex simulation designs and sensitivity analyses.
The user defines all information that is needed in an intuitive framework, using class objects.
Experiments are submitted from 'R' to 'NetLogo' via 'XML' files that are dynamically written, based on specifications defined by the user.
By nesting model calls in future environments, large simulation design with many runs can be executed in parallel.
This also enables simulating 'NetLogo' experiments on remote HPC machines.
In order to use this package, 'Java' and 'NetLogo' (>= 5.3.1) need to be available on the executing system.
Author: Jan Salecker [aut, cre] (<https://orcid.org/0000-0002-9000-4229>),
Marco Sciaini [aut] (<https://orcid.org/0000-0002-3042-5435>),
Marina Papadopoulou [rev] (Marina reviewed the package for ropensci,
see <https://github.com/ropensci/software-review/issues/262>)
Maintainer: Jan Salecker <jsaleck@gwdg.de>
Diff between nlrx versions 0.1.0 dated 2019-03-18 and 0.2.0 dated 2019-03-28
DESCRIPTION | 6 - MD5 | 20 ++-- NEWS.md | 6 + R/nl_to_raster.R | 2 README.md | 181 ++++++++------------------------------- build/vignette.rds |binary inst/doc/furthernotes.html | 28 +++++- inst/doc/getstarted.Rmd | 8 + inst/doc/getstarted.html | 31 +++++- inst/doc/simdesign-examples.html | 28 +++++- vignettes/getstarted.Rmd | 8 + 11 files changed, 145 insertions(+), 173 deletions(-)
Title: Fifty-Fifty MANOVA
Description: General linear modeling with multiple responses (MANCOVA). An overall p-value for each model term is calculated by the 50-50 MANOVA method by Langsrud (2002) <doi:10.1111/1467-9884.00320>, which handles collinear responses. Rotation testing, described by Langsrud (2005) <doi:10.1007/s11222-005-4789-5>, is used to compute adjusted single response p-values according to familywise error rates and false discovery rates (FDR). The approach to FDR is described in the appendix of Moen et al. (2005) <doi:10.1128/AEM.71.4.2086-2094.2005>. Unbalanced designs are handled by Type II sums of squares as argued in Langsrud (2003) <doi:10.1023/A:1023260610025>. Furthermore, the Type II philosophy is extended to continuous design variables as described in Langsrud et al. (2007) <doi:10.1080/02664760701594246>. This means that the method is invariant to scale changes and that common pitfalls are avoided.
Author: Øyvind Langsrud [aut, cre],
Bjørn-Helge Mevik [aut]
Maintainer: Øyvind Langsrud <oyl@ssb.no>
Diff between ffmanova versions 1.0.0 dated 2019-01-17 and 1.1.0 dated 2019-03-28
DESCRIPTION | 9 +- MD5 | 38 +++++---- NAMESPACE | 7 + NEWS.md |only R/ffAnova.R |only R/ffmanova.R | 180 ++++++++++++++++++++++++++++++++++++++------- R/ffmanova_Version_1_0_0.R |only R/ffmanova_div.R | 4 - R/ffmanovatest.R | 8 +- R/manova_5050.R | 6 + R/myorth.R | 2 R/predict_ffmanova.R |only R/stdize.R | 85 +++++++++++++++++++++ R/summaries.R | 3 R/unitest.R | 6 - R/x_Obj.R | 2 R/xy_Obj.R | 44 ++++++++++- man/ffAnova.Rd |only man/ffmanova.Rd | 42 ++++++++-- man/predict.ffmanova.Rd |only man/stdize.Rd | 7 + man/xy_Obj.Rd | 32 +++++++- tests |only 23 files changed, 404 insertions(+), 71 deletions(-)
Title: Parallel Implementation of 'ETERNA 3.40' for Prediction and
Analysis of Earth Tides
Description: This is a port of 'Fortran ETERNA 3.4'
<http://igets.u-strasbg.fr/soft_and_tool.php> by H.G. Wenzel
for calculating synthetic Earth tides using the
Hartmann and Wenzel (1994) <doi:10.1029/95GL03324> or
Kudryavtsev (2004) <doi:10.1007/s00190-003-0361-2> tidal catalogs.
Author: Jonathan Kennel [aut, cre, trl],
Beth Parker [ths],
Wenzel Hans-Georg [ctb]
Maintainer: Jonathan Kennel <jkennel@uoguelph.ca>
Diff between earthtide versions 0.0.4 dated 2019-03-15 and 0.0.5 dated 2019-03-28
earthtide-0.0.4/earthtide/R/delta_t.R |only earthtide-0.0.4/earthtide/R/ut1_utc.R |only earthtide-0.0.4/earthtide/R/zzz.R |only earthtide-0.0.4/earthtide/data/datalist |only earthtide-0.0.4/earthtide/data/dut1.rda |only earthtide-0.0.4/earthtide/data/hw95s.rda |only earthtide-0.0.4/earthtide/data/ksm04.rda |only earthtide-0.0.4/earthtide/data/simon_coef_1994.rda |only earthtide-0.0.4/earthtide/man/astro.Rd |only earthtide-0.0.4/earthtide/man/astro_der.Rd |only earthtide-0.0.4/earthtide/man/delta_t.Rd |only earthtide-0.0.4/earthtide/man/dut1.Rd |only earthtide-0.0.4/earthtide/man/et_analyze.Rd |only earthtide-0.0.4/earthtide/man/et_calculate.Rd |only earthtide-0.0.4/earthtide/man/et_predict.Rd |only earthtide-0.0.4/earthtide/man/get_dut1.Rd |only earthtide-0.0.4/earthtide/man/gravity_station.Rd |only earthtide-0.0.4/earthtide/man/hw95s.Rd |only earthtide-0.0.4/earthtide/man/ksm04.Rd |only earthtide-0.0.4/earthtide/man/legendre.Rd |only earthtide-0.0.4/earthtide/man/legendre_bh.Rd |only earthtide-0.0.4/earthtide/man/legendre_deriv_bh.Rd |only earthtide-0.0.4/earthtide/man/love.Rd |only earthtide-0.0.4/earthtide/man/scale_legendre_bh.Rd |only earthtide-0.0.4/earthtide/man/simon_coef_1994.Rd |only earthtide-0.0.4/earthtide/man/time_der_mat.Rd |only earthtide-0.0.4/earthtide/man/time_mat.Rd |only earthtide-0.0.4/earthtide/man/ut1_utc.Rd |only earthtide-0.0.4/earthtide/man/utc_julian.Rd |only earthtide-0.0.4/earthtide/man/utc_julian_2000.Rd |only earthtide-0.0.4/earthtide/man/utc_mod_julian.Rd |only earthtide-0.0.4/earthtide/tests/testthat/test-datasets.R |only earthtide-0.0.4/earthtide/tests/testthat/test-delta_t.R |only earthtide-0.0.4/earthtide/tests/testthat/test-onload.R |only earthtide-0.0.4/earthtide/tests/testthat/test-ut1_utc.R |only earthtide-0.0.5/earthtide/DESCRIPTION | 9 earthtide-0.0.5/earthtide/MD5 | 94 - earthtide-0.0.5/earthtide/NAMESPACE | 2 earthtide-0.0.5/earthtide/R/RcppExports.R | 239 ---- earthtide-0.0.5/earthtide/R/datasets.R | 475 ++++++--- earthtide-0.0.5/earthtide/R/earthtide-package.R | 4 earthtide-0.0.5/earthtide/R/earthtide.R | 51 - earthtide-0.0.5/earthtide/R/gravity_station.R | 22 earthtide-0.0.5/earthtide/R/interpolate_dut1.R |only earthtide-0.0.5/earthtide/R/julian_date.R | 104 +- earthtide-0.0.5/earthtide/R/love.R | 22 earthtide-0.0.5/earthtide/R/prepare_catalog.R | 110 +- earthtide-0.0.5/earthtide/R/prepare_datetime.R | 32 earthtide-0.0.5/earthtide/R/prepare_station.R | 10 earthtide-0.0.5/earthtide/R/sysdata.rda |only earthtide-0.0.5/earthtide/build/partial.rdb |binary earthtide-0.0.5/earthtide/inst/doc/introduction.Rmd | 15 earthtide-0.0.5/earthtide/inst/doc/introduction.html | 21 earthtide-0.0.5/earthtide/man/Earthtide.Rd | 26 earthtide-0.0.5/earthtide/man/earthtide-package.Rd | 4 earthtide-0.0.5/earthtide/man/eterna_wavegroups.Rd | 11 earthtide-0.0.5/earthtide/man/get_iers.Rd |only earthtide-0.0.5/earthtide/src/Makevars | 10 earthtide-0.0.5/earthtide/src/Makevars.win | 9 earthtide-0.0.5/earthtide/src/RcppExports.cpp | 9 earthtide-0.0.5/earthtide/src/astro.cpp | 508 +++++----- earthtide-0.0.5/earthtide/tests/testthat/test-earthtide.R | 45 earthtide-0.0.5/earthtide/tests/testthat/test-get_iers.R |only earthtide-0.0.5/earthtide/tests/testthat/test-interpolate_dut1.R |only earthtide-0.0.5/earthtide/tests/testthat/test-prepare_catalog.R | 26 earthtide-0.0.5/earthtide/tests/testthat/test-utc_julian.R | 4 earthtide-0.0.5/earthtide/tests/testthat/test-utc_mod_julian.R | 10 earthtide-0.0.5/earthtide/vignettes/introduction.Rmd | 15 68 files changed, 1019 insertions(+), 868 deletions(-)
Title: Interactive Bipartite Graphs
Description: Generates interactive bipartite graphs using the D3 library.
Designed for use with the 'bipartite' analysis package.
Sources open source 'vis-js' library (<http://visjs.org/>).
Adapted from examples at <https://bl.ocks.org/NPashaP> (released under GPL-3).
Author: Chris Terry [aut, cre]
Maintainer: Chris Terry <christerry3@btinternet.com>
Diff between bipartiteD3 versions 0.1.0 dated 2018-11-26 and 0.2.0 dated 2019-03-28
DESCRIPTION | 10 MD5 | 40 +- NAMESPACE | 4 NEWS.md | 19 + R/Array2DF.R | 4 R/BP_JS_Writer.R | 540 ++++++++++++++++------------------------ R/List2DF.R | 4 R/LoadVisJS.R | 15 - R/Matrix2DF.R | 1 R/OrderByCrossover.R |only R/bipartite_D3.r | 67 ++-- build/vignette.rds |binary inst/doc/bipartiteD3_Intro.R | 15 - inst/doc/bipartiteD3_Intro.Rmd | 50 ++- inst/doc/bipartiteD3_Intro.html | 303 +++++++++++++--------- man/Array2DF.Rd | 3 man/BP_JS_Writer.Rd | 13 man/List2DF.Rd | 3 man/LoadVisJS.Rd | 2 man/OrderByCrossover.Rd |only man/bipartite_D3.Rd | 16 - vignettes/bipartiteD3_Intro.Rmd | 50 ++- 22 files changed, 602 insertions(+), 557 deletions(-)
Title: Linear and Nonlinear Methods for Analyzing Daily and Monthly
Dendroclimatological Data
Description: Provides novel dendroclimatological methods, primarily used by the
Tree-ring research community. There are two core functions. The first one is
daily_response(), which finds the optimal sequence of days that are related
to one or more tree-ring proxy records. The second one is compare_methods(),
which effectively compares several linear and nonlinear regression algorithms.
Author: Jernej Jevsenak [aut, cre]
Maintainer: Jernej Jevsenak <jernej.jevsenak@gmail.com>
Diff between dendroTools versions 1.0.2 dated 2018-11-21 and 1.0.3 dated 2019-03-28
DESCRIPTION | 15 +- MD5 | 48 ++++++--- NAMESPACE | 3 NEWS.md | 10 + R/KNMI_daily_transform.R |only R/LJ_monthly_precipitation.R |only R/LJ_monthly_temperatures.R |only R/compare_methods.R | 2 R/daily_response.R | 15 +- R/monthly_response.R |only R/plot_extreme.R | 174 ++++++++++++++++++++++++++++++++- R/plot_heatmap.R | 104 ++++++++++++++++--- R/plot_specific.R | 6 - R/swit272.R |only R/swit272_daily_temperatures.R |only data/LJ_monthly_precipitation.rda |only data/LJ_monthly_temperatures.rda |only data/swit272.rda |only data/swit272_daily_temperatures.rda |only inst/doc/Examples_daily_response.html | 82 +++++++-------- inst/doc/compare_methods_vignette.html | 4 man/KNMI_daily_transform.Rd |only man/LJ_monthly_precipitation.Rd |only man/LJ_monthly_temperatures.Rd |only man/compare_methods.Rd | 2 man/daily_response.Rd | 5 man/monthly_response.Rd |only man/plot_extreme.Rd | 9 + man/plot_heatmap.Rd | 5 man/plot_specific.Rd | 4 man/swit272.Rd |only man/swit272_daily_temperatures.Rd |only tests/testthat/test_general.R | 4 33 files changed, 382 insertions(+), 110 deletions(-)
Title: (Permuted) Brunner-Munzel Test
Description: Provides the functions for Brunner-Munzel test and
permuted Brunner-Munzel test,
which enable to use formula, matrix, and table as argument.
These functions are based on Brunner and Munzel (2000)
<doi:10.1002/(SICI)1521-4036(200001)42:1%3C17::AID-BIMJ17%3E3.0.CO;2-U>
and Neubert and Brunner (2007) <doi:10.1016/j.csda.2006.05.024>,
and are written with FORTRAN.
Author: Toshiaki Ara [aut, cre]
Maintainer: Toshiaki Ara <toshiaki.ara@gmail.com>
Diff between brunnermunzel versions 1.2.0 dated 2019-03-06 and 1.3.2 dated 2019-03-28
brunnermunzel-1.2.0/brunnermunzel/README.md |only brunnermunzel-1.3.2/brunnermunzel/DESCRIPTION | 11 - brunnermunzel-1.3.2/brunnermunzel/MD5 | 29 ++-- brunnermunzel-1.3.2/brunnermunzel/NAMESPACE | 2 brunnermunzel-1.3.2/brunnermunzel/NEWS.md |only brunnermunzel-1.3.2/brunnermunzel/R/brunnermunzel.perutation.test.R | 31 ++--- brunnermunzel-1.3.2/brunnermunzel/R/brunnermunzel.test.R | 61 ++++------ brunnermunzel-1.3.2/brunnermunzel/build/vignette.rds |binary brunnermunzel-1.3.2/brunnermunzel/inst/doc/usage.Rmd | 2 brunnermunzel-1.3.2/brunnermunzel/inst/doc/usage.html | 11 + brunnermunzel-1.3.2/brunnermunzel/man/brunnermunzel.test.Rd | 6 brunnermunzel-1.3.2/brunnermunzel/src/Rf_wrapper.c |only brunnermunzel-1.3.2/brunnermunzel/src/bm_permutation_stat.f | 2 brunnermunzel-1.3.2/brunnermunzel/src/bm_permutation_test.f |only brunnermunzel-1.3.2/brunnermunzel/src/bm_test.f |only brunnermunzel-1.3.2/brunnermunzel/src/calc_statistics.f | 7 - brunnermunzel-1.3.2/brunnermunzel/src/registerDynamicSymbol.c | 2 brunnermunzel-1.3.2/brunnermunzel/vignettes/usage.Rmd | 2 18 files changed, 81 insertions(+), 85 deletions(-)
Title: XML Output Functions for Easy Creation of Moodle Questions
Description: Provides a set of basic functions for creating Moodle XML
output files suited for importing questions in Moodle (a learning
management system, see <https://moodle.org/> for more information).
Author: Emmanuel Curis [aut, cre]
Maintainer: Emmanuel Curis <emmanuel.curis@parisdescartes.fr>
Diff between SARP.moodle versions 0.3.8 dated 2017-04-01 and 0.3.9 dated 2019-03-28
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- NAMESPACE | 2 +- 3 files changed, 7 insertions(+), 7 deletions(-)
Title: Simulation Tools for Small Area Estimation
Description: Tools for the simulation of data in the context of small area
estimation. Combine all steps of your simulation - from data generation
over drawing samples to model fitting - in one object. This enables easy
modification and combination of different scenarios. You can store your
results in a folder or start the simulation in parallel.
Author: Sebastian Warnholz [aut, cre],
Timo Schmid [aut]
Maintainer: Sebastian Warnholz <wahani@gmail.com>
Diff between saeSim versions 0.9.0 dated 2017-05-08 and 0.10.0 dated 2019-03-28
DESCRIPTION | 12 LICENSE | 2 MD5 | 29 - NEWS | 5 R/01-helper-lib.R | 4 R/03-sample.R | 52 +- build/vignette.rds |binary inst/CITATION |only inst/doc/Introduction.html | 738 +++++++++++++++++++++++++-------------- man/as.data.frame.sim_setup.Rd | 4 man/sampling.Rd | 13 man/sim_gen_cont.Rd | 3 man/sim_resp.Rd | 10 man/sim_sample.Rd | 3 tests/testthat/test-sim_comp.R | 16 tests/testthat/test-sim_sample.R | 36 + 16 files changed, 600 insertions(+), 327 deletions(-)
Title: Quantification of Fate Bias in Multipotent Progenitors
Description: Application of 'FateID' allows computation and visualization of cell fate bias for multi-lineage single cell transcriptome data. Herman, J.S., Sagar, Grün D. (2018) <DOI:10.1038/nmeth.4662>.
Author: Dominic Grün <dominic.gruen@gmail.com>
Maintainer: Dominic Grün <dominic.gruen@gmail.com>
Diff between FateID versions 0.1.6 dated 2019-02-27 and 0.1.7 dated 2019-03-28
DESCRIPTION | 10 +++++----- MD5 | 22 +++++++++++----------- NAMESPACE | 1 + R/FateID_functions.R | 39 ++++++++++++++++++++++++--------------- inst/doc/FateID.R | 2 +- inst/doc/FateID.Rmd | 6 +++--- inst/doc/FateID.html | 18 +++++++++--------- man/compdr.Rd | 13 ++++++++----- man/plotFateMap.Rd | 2 +- man/plotheatmap.Rd | 4 +++- man/prcurve.Rd | 2 +- vignettes/FateID.Rmd | 6 +++--- 12 files changed, 70 insertions(+), 55 deletions(-)
Title: 'Drat' R Archive Template
Description: Creation and use of R Repositories via helper functions
to insert packages into a repository, and to add repository information
to the current R session. Two primary types of repositories are support:
gh-pages at GitHub, as well as local repositories on either the same machine
or a local network. Drat is a recursive acronym: Drat R Archive Template.
Author: Dirk Eddelbuettel with contributions by Carl Boettiger, Neal Fultz,
Sebastian Gibb, Colin Gillespie, Jan Górecki, Matt Jones, Thomas Leeper,
Steven Pav, Jan Schulz and Christoph Stepper.
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between drat versions 0.1.4 dated 2017-12-16 and 0.1.5 dated 2019-03-28
ChangeLog | 43 ++++ DESCRIPTION | 11 - MD5 | 45 ++-- NAMESPACE | 2 R/addRepo.R | 5 R/archivePackages.R | 16 - R/insertPackage.R | 62 +++--- R/pruneRepo.R | 48 +++-- README.md | 5 build/vignette.rds |binary inst/NEWS.Rd | 18 + inst/doc/CombiningDratAndTravis.html | 227 ++++++++++++++++++++++-- inst/doc/DratFAQ.html | 317 +++++++++++++++++++++++++++++----- inst/doc/DratForPackageAuthors.html | 323 ++++++++++++++++++++++++++++++----- inst/doc/DratForPackageUsers.html | 315 +++++++++++++++++++++++++++++----- inst/doc/WhyDrat.html | 317 +++++++++++++++++++++++++++++----- man/addRepo.Rd | 10 - man/archivePackages.Rd | 7 man/getPackageInfo.Rd | 3 man/getPathForPackage.Rd | 3 man/identifyPackageType.Rd | 3 man/initRepo.Rd | 3 man/pruneRepo.Rd | 29 +-- tests/skeleton_git2r.R |only 24 files changed, 1508 insertions(+), 304 deletions(-)
Title: Waveband Definitions for UV, VIS, and IR Radiation
Description: Constructors of waveband objects for commonly used biological
spectral weighting functions (BSWFs) and for different wavebands describing
named ranges of wavelengths in the ultraviolet (UV), visible (VIS)
and infrared (IR) regions of the electromagnetic spectrum. Part of the
'r4photobiology' suite, Aphalo P. J. (2015) <doi:10.19232/uv4pb.2015.1.14>.
Author: Pedro J. Aphalo [aut, cre] (<https://orcid.org/0000-0003-3385-972X>),
Titta K. Kotilainen [ctb] (<https://orcid.org/0000-0002-2822-9734>)
Maintainer: Pedro J. Aphalo <pedro.aphalo@helsinki.fi>
Diff between photobiologyWavebands versions 0.4.2 dated 2017-03-20 and 0.4.3 dated 2019-03-28
photobiologyWavebands-0.4.2/photobiologyWavebands/inst/staticdocs |only photobiologyWavebands-0.4.3/photobiologyWavebands/DESCRIPTION | 25 photobiologyWavebands-0.4.3/photobiologyWavebands/MD5 | 126 +-- photobiologyWavebands-0.4.3/photobiologyWavebands/NAMESPACE | 2 photobiologyWavebands-0.4.3/photobiologyWavebands/NEWS | 16 photobiologyWavebands-0.4.3/photobiologyWavebands/R/far.red.r | 17 photobiologyWavebands-0.4.3/photobiologyWavebands/R/icnirp.r | 2 photobiologyWavebands-0.4.3/photobiologyWavebands/R/landsat.bands.r | 7 photobiologyWavebands-0.4.3/photobiologyWavebands/R/photobiologyWavebands.R | 11 photobiologyWavebands-0.4.3/photobiologyWavebands/R/red.r | 2 photobiologyWavebands-0.4.3/photobiologyWavebands/R/uv.bands.r | 7 photobiologyWavebands-0.4.3/photobiologyWavebands/R/uva.r | 22 photobiologyWavebands-0.4.3/photobiologyWavebands/R/uvi.r | 4 photobiologyWavebands-0.4.3/photobiologyWavebands/R/uvi.wb.r | 4 photobiologyWavebands-0.4.3/photobiologyWavebands/README.md | 6 photobiologyWavebands-0.4.3/photobiologyWavebands/build/vignette.rds |binary photobiologyWavebands-0.4.3/photobiologyWavebands/inst/CITATION | 2 photobiologyWavebands-0.4.3/photobiologyWavebands/inst/doc/user-guide.Rmd | 5 photobiologyWavebands-0.4.3/photobiologyWavebands/inst/doc/user-guide.html | 408 +++++++--- photobiologyWavebands-0.4.3/photobiologyWavebands/man/Blue.Rd | 1 photobiologyWavebands-0.4.3/photobiologyWavebands/man/CH4.Rd | 1 photobiologyWavebands-0.4.3/photobiologyWavebands/man/CH4_e_fun.Rd | 1 photobiologyWavebands-0.4.3/photobiologyWavebands/man/CH4_q_fun.Rd | 1 photobiologyWavebands-0.4.3/photobiologyWavebands/man/CIE.Rd | 1 photobiologyWavebands-0.4.3/photobiologyWavebands/man/CIE_e_fun.Rd | 1 photobiologyWavebands-0.4.3/photobiologyWavebands/man/CIE_q_fun.Rd | 1 photobiologyWavebands-0.4.3/photobiologyWavebands/man/DNA_GM.Rd | 1 photobiologyWavebands-0.4.3/photobiologyWavebands/man/DNA_GM_q_fun.Rd | 1 photobiologyWavebands-0.4.3/photobiologyWavebands/man/DNA_N.Rd | 1 photobiologyWavebands-0.4.3/photobiologyWavebands/man/DNA_P.Rd | 1 photobiologyWavebands-0.4.3/photobiologyWavebands/man/DNA_P_q_fun.Rd | 1 photobiologyWavebands-0.4.3/photobiologyWavebands/man/FLAV.Rd | 1 photobiologyWavebands-0.4.3/photobiologyWavebands/man/FLAV_q_fun.Rd | 1 photobiologyWavebands-0.4.3/photobiologyWavebands/man/Far_red.Rd | 15 photobiologyWavebands-0.4.3/photobiologyWavebands/man/GEN_G.Rd | 1 photobiologyWavebands-0.4.3/photobiologyWavebands/man/GEN_G_q_fun.Rd | 1 photobiologyWavebands-0.4.3/photobiologyWavebands/man/GEN_M.Rd | 1 photobiologyWavebands-0.4.3/photobiologyWavebands/man/GEN_M_q_fun.Rd | 1 photobiologyWavebands-0.4.3/photobiologyWavebands/man/GEN_T.Rd | 1 photobiologyWavebands-0.4.3/photobiologyWavebands/man/GEN_T_q_fun.Rd | 1 photobiologyWavebands-0.4.3/photobiologyWavebands/man/Green.Rd | 1 photobiologyWavebands-0.4.3/photobiologyWavebands/man/ICNIRP.Rd | 3 photobiologyWavebands-0.4.3/photobiologyWavebands/man/ICNIRP_e_fun.Rd | 1 photobiologyWavebands-0.4.3/photobiologyWavebands/man/IR.Rd | 1 photobiologyWavebands-0.4.3/photobiologyWavebands/man/IR_bands.Rd | 1 photobiologyWavebands-0.4.3/photobiologyWavebands/man/Landsat_bands.Rd | 9 photobiologyWavebands-0.4.3/photobiologyWavebands/man/Orange.Rd | 1 photobiologyWavebands-0.4.3/photobiologyWavebands/man/PG.Rd | 1 photobiologyWavebands-0.4.3/photobiologyWavebands/man/PG_q_fun.Rd | 1 photobiologyWavebands-0.4.3/photobiologyWavebands/man/Plant_bands.Rd | 1 photobiologyWavebands-0.4.3/photobiologyWavebands/man/Purple.Rd | 1 photobiologyWavebands-0.4.3/photobiologyWavebands/man/Red.Rd | 3 photobiologyWavebands-0.4.3/photobiologyWavebands/man/UV.Rd | 1 photobiologyWavebands-0.4.3/photobiologyWavebands/man/UVA.Rd | 9 photobiologyWavebands-0.4.3/photobiologyWavebands/man/UVB.Rd | 1 photobiologyWavebands-0.4.3/photobiologyWavebands/man/UVC.Rd | 1 photobiologyWavebands-0.4.3/photobiologyWavebands/man/UVI.Rd | 4 photobiologyWavebands-0.4.3/photobiologyWavebands/man/UVI_wb.Rd | 4 photobiologyWavebands-0.4.3/photobiologyWavebands/man/UV_bands.Rd | 6 photobiologyWavebands-0.4.3/photobiologyWavebands/man/VIS.Rd | 1 photobiologyWavebands-0.4.3/photobiologyWavebands/man/VIS_bands.Rd | 1 photobiologyWavebands-0.4.3/photobiologyWavebands/man/Yellow.Rd | 1 photobiologyWavebands-0.4.3/photobiologyWavebands/man/photobiologyWavebands-package.Rd | 22 photobiologyWavebands-0.4.3/photobiologyWavebands/vignettes/user-guide.Rmd | 5 64 files changed, 575 insertions(+), 206 deletions(-)
More information about photobiologyWavebands at CRAN
Permanent link
Title: Early Testing for a Treatment Effect using Surrogate Marker
Information
Description: Provides functions to test for a treatment effect in terms of the difference in survival between a treatment group and a control group using surrogate marker information obtained at some early time point in a time-to-event outcome setting. Nonparametric kernel estimation is used to estimate the test statistic and perturbation resampling is used for variance estimation. More details will be available in the future in: Parast L, Cai T, Tian L (2019). Using a Surrogate Marker for Early Testing of a Treatment Effect. Biometrics, In press.
Author: Layla Parast
Maintainer: Layla Parast <parast@rand.org>
Diff between SurrogateTest versions 1.0 dated 2017-10-29 and 1.1 dated 2019-03-28
DESCRIPTION | 10 +++---- MD5 | 20 +++++++------- R/Functions_SurrogateTest.R | 60 ++++++++++++++++++++++++++++++++++++++++---- data/dataA.RData |binary data/dataB.RData |binary man/censor.weight.Rd | 6 ++-- man/dataB.Rd | 2 - man/design.study.Rd | 8 ++++- man/early.delta.test.Rd | 14 +++++++--- man/recover.B.Rd | 9 ++++-- man/var.delta.eb.Rd | 2 - 11 files changed, 97 insertions(+), 34 deletions(-)
Title: Tools for the Analysis of Air Pollution Data
Description: Tools to analyse, interpret and understand air
pollution data. Data are typically hourly time series
and both monitoring data and dispersion model output
can be analysed. Many functions can also be applied to
other data, including meteorological and traffic data.
Author: David Carslaw [aut, cre],
Karl Ropkins [aut]
Maintainer: David Carslaw <david.carslaw@york.ac.uk>
Diff between openair versions 2.6-1 dated 2018-11-20 and 2.6-4 dated 2019-03-28
DESCRIPTION | 8 MD5 | 148 - NAMESPACE | 278 +-- R/TheilSen.R | 1505 ++++++++--------- R/aqStats.R | 819 ++++----- R/calcPercentile.R | 162 - R/checkPrep.R | 314 +-- R/conditionalEval.R | 2 R/corPlot.R | 946 +++++------ R/cutData.R | 1288 +++++++-------- R/getMeta.R | 293 +-- R/importAURN.R | 506 ++--- R/importKCL.R | 4 R/importSAQN.R | 368 ++-- R/importTraj.R | 4 R/importWAQN.R |only R/percentileRose.R | 1296 +++++++-------- R/polarFreq.R | 974 +++++------ R/polarPlot.R | 2648 +++++++++++++++---------------- R/quickText.R | 393 ++-- R/scatterPlot.R | 3840 ++++++++++++++++++++++----------------------- R/smoothTrend.R | 1185 ++++++------- R/timeAverage.R | 1138 ++++++------- R/timeProp.R | 870 +++++----- R/utilities.R | 2297 +++++++++++++------------- R/windRose.R | 1916 +++++++++++----------- man/TaylorDiagram.Rd | 566 +++--- man/TheilSen.Rd | 577 +++--- man/aqStats.Rd | 218 +- man/binData.Rd | 104 - man/bootMeanDF.Rd | 56 man/calcFno2.Rd | 226 +- man/calcPercentile.Rd | 134 - man/calendarPlot.Rd | 424 ++-- man/conditionalEval.Rd | 384 ++-- man/conditionalQuantile.Rd | 340 +-- man/corPlot.Rd | 316 +-- man/cutData.Rd | 326 +-- man/drawOpenKey.Rd | 372 ++-- man/import.Rd | 248 +- man/importADMS.Rd | 324 +-- man/importAURN.Rd | 278 +-- man/importAURNCsv.Rd | 364 ++-- man/importKCL.Rd | 1072 ++++++------ man/importMeta.Rd | 130 - man/importSAQN.Rd | 230 +- man/importTraj.Rd | 302 +-- man/importWAQN.Rd |only man/kernelExceed.Rd | 310 +-- man/linearRelation.Rd | 306 +-- man/modStats.Rd | 302 +-- man/mydata.Rd | 106 - man/openColours.Rd | 188 +- man/openair.Rd | 188 +- man/percentileRose.Rd | 424 ++-- man/polarAnnulus.Rd | 532 +++--- man/polarCluster.Rd | 362 ++-- man/polarFreq.Rd | 442 ++--- man/polarPlot.Rd | 960 +++++------ man/quickText.Rd | 96 - man/rollingMean.Rd | 134 - man/scatterPlot.Rd | 756 ++++---- man/selectByDate.Rd | 162 - man/selectRunning.Rd | 118 - man/smoothTrend.Rd | 456 ++--- man/splitByDate.Rd | 88 - man/summaryPlot.Rd | 352 ++-- man/timeAverage.Rd | 434 ++--- man/timePlot.Rd | 662 +++---- man/timeProp.Rd | 312 +-- man/timeVariation.Rd | 628 +++---- man/trajCluster.Rd | 294 +-- man/trajLevel.Rd | 530 +++--- man/trajPlot.Rd | 326 +-- man/trendLevel.Rd | 428 ++--- man/windRose.Rd | 648 +++---- 76 files changed, 20384 insertions(+), 20353 deletions(-)
Title: Language Server Protocol
Description: An implementation of the Language Server Protocol for R. The Language Server protocol is used by an editor client to integrate features like auto completion. See <https://microsoft.github.io/language-server-protocol> for details.
Author: Randy Lai
Maintainer: Randy Lai <randy.cs.lai@gmail.com>
Diff between languageserver versions 0.2.8 dated 2019-03-26 and 0.2.9 dated 2019-03-28
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ R/handlers-workspace.R | 4 +++- R/hover.R | 1 - R/utils.R | 8 ++++---- R/workspace.R | 6 ++++-- README.md | 5 +---- 7 files changed, 22 insertions(+), 22 deletions(-)
More information about languageserver at CRAN
Permanent link
Title: Dependencies for the 'jamovi' Framework
Description: A framework for creating rich interactive analyses for the jamovi
platform (see <https://www.jamovi.org> for more information).
Author: Jonathon Love
Maintainer: Jonathon Love <jon@thon.cc>
Diff between jmvcore versions 0.9.5.2 dated 2018-12-10 and 0.9.6.4 dated 2019-03-28
DESCRIPTION | 8 +-- MD5 | 35 ++++++++------- NAMESPACE | 5 ++ R/analysis.R | 111 +++++++++++++++++++++++++++++++++++------------- R/array.R | 18 +++++++ R/column.R | 15 +++++- R/group.R | 19 +++++++- R/html.R | 6 +- R/image.R | 24 +++++----- R/marshal.R | 15 ++++++ R/options.R | 6 +- R/preformatted.R | 6 +- R/results.R | 19 ++++++-- R/table.R | 62 ++++++++++++++++---------- R/utils.R | 80 +++++++++++++++++++++++++--------- inst/jamovi.proto | 21 ++++++++- man/decomposeFormula.Rd |only man/enquo.Rd |only man/marshalData.Rd |only man/marshalFormula.Rd |only man/resolveQuo.Rd |only 21 files changed, 325 insertions(+), 125 deletions(-)
Title: Dyadic Network Analysis
Description: Contains functions for the MCMC simulation of dyadic network models j2 (Zijlstra, 2017, <doi:10.1080/0022250X.2017.1387858>) and p2 (Van Duijn, Snijders & Zijlstra, 2004, <doi: 10.1046/j.0039-0402.2003.00258.x>) as described in Zijlstra, Van Duijn & Snijders (2009) <doi: 10.1348/000711007X255336>.
Author: Bonne J.H. Zijlstra <B.J.H.Zijlstra@uva.nl>
Maintainer: Bonne J.H. Zijlstra <B.J.H.Zijlstra@uva.nl>
Diff between dyads versions 1.1 dated 2017-11-22 and 1.1.2 dated 2019-03-28
DESCRIPTION | 12 - MD5 | 16 - NAMESPACE | 5 R/j2.R | 544 ++++++++++++++++++++++++++------------------------- R/p2.R | 76 ++++--- build/partial.rdb |binary man/dyads-package.Rd | 4 man/j2.Rd | 4 man/p2.Rd | 4 9 files changed, 351 insertions(+), 314 deletions(-)
Title: Polynomials in R
Description: Implements univariate polynomial operations in R, including
polynomial arithmetic, finding zeros, plotting, and some operations on
lists of polynomials.
Author: Bill Venables, with contribution by Kurt Hornik and Georgi Boshnakov
Maintainer: Bill Venables <Bill.Venables@gmail.com>
Diff between PolynomF versions 1.0-2 dated 2018-05-17 and 1.1-0 dated 2019-03-28
PolynomF-1.0-2/PolynomF/build/partial.rdb |only PolynomF-1.0-2/PolynomF/man/Math.polynom.Rd |only PolynomF-1.0-2/PolynomF/man/PolynomF-internal.Rd |only PolynomF-1.0-2/PolynomF/man/PolynomF-package.Rd |only PolynomF-1.0-2/PolynomF/man/c.polylist.Rd |only PolynomF-1.0-2/PolynomF/man/integral.Rd |only PolynomF-1.0-2/PolynomF/src/PolynomR_init.c |only PolynomF-1.0-2/PolynomF/src/poly_mult.c |only PolynomF-1.1-0/PolynomF/DESCRIPTION | 15 PolynomF-1.1-0/PolynomF/MD5 | 55 PolynomF-1.1-0/PolynomF/NAMESPACE | 128 - PolynomF-1.1-0/PolynomF/R/PolynomF.R | 1692 ++++++++++++-------- PolynomF-1.1-0/PolynomF/R/RcppExports.R |only PolynomF-1.1-0/PolynomF/build/vignette.rds |only PolynomF-1.1-0/PolynomF/inst |only PolynomF-1.1-0/PolynomF/man/GCD.Rd | 86 - PolynomF-1.1-0/PolynomF/man/GroupGenerics.Rd |only PolynomF-1.1-0/PolynomF/man/LCM.Rd |only PolynomF-1.1-0/PolynomF/man/Ops.polynom.Rd |only PolynomF-1.1-0/PolynomF/man/as.character.polynom.Rd | 69 PolynomF-1.1-0/PolynomF/man/as.function.polynom.Rd | 91 - PolynomF-1.1-0/PolynomF/man/c.polynom.Rd |only PolynomF-1.1-0/PolynomF/man/change.origin.Rd | 74 PolynomF-1.1-0/PolynomF/man/coef.polynom.Rd |only PolynomF-1.1-0/PolynomF/man/deriv.polynom.Rd |only PolynomF-1.1-0/PolynomF/man/plot.polynom.Rd | 121 - PolynomF-1.1-0/PolynomF/man/poly.calc.Rd | 142 - PolynomF-1.1-0/PolynomF/man/poly.orth.Rd |only PolynomF-1.1-0/PolynomF/man/polynom.Rd | 141 - PolynomF-1.1-0/PolynomF/man/predict.polynom.Rd |only PolynomF-1.1-0/PolynomF/man/print.polylist.Rd |only PolynomF-1.1-0/PolynomF/man/print.polynom.Rd |only PolynomF-1.1-0/PolynomF/man/rep.polylist.Rd |only PolynomF-1.1-0/PolynomF/man/solve.polynom.Rd | 73 PolynomF-1.1-0/PolynomF/man/sub-.polylist.Rd |only PolynomF-1.1-0/PolynomF/man/summary.polynom.Rd | 98 - PolynomF-1.1-0/PolynomF/man/tangent.Rd |only PolynomF-1.1-0/PolynomF/man/unique.polylist.Rd |only PolynomF-1.1-0/PolynomF/src/RcppExports.cpp |only PolynomF-1.1-0/PolynomF/src/poly_divide.cpp |only PolynomF-1.1-0/PolynomF/vignettes |only 41 files changed, 1545 insertions(+), 1240 deletions(-)
Title: Connect to the 'jamovi' Statistical Spreadsheet
Description: Methods to access data sets from the 'jamovi' statistical
spreadsheet (see <https://www.jamovi.org> for more information) from R.
Author: Jonathon Love [aut, cre]
Maintainer: Jonathon Love <jon@thon.cc>
Diff between jmvconnect versions 1.0.7 dated 2018-11-30 and 1.0.8 dated 2019-03-28
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- R/eval.R | 31 +++++++++++++++++-------------- 3 files changed, 23 insertions(+), 20 deletions(-)
Title: HTTP Client
Description: A simple HTTP client, with tools for making HTTP requests,
and mocking HTTP requests. The package is built on R6, and takes
inspiration from Ruby's 'faraday' gem (<https://rubygems.org/gems/faraday>).
The package name is a play on curl, the widely used command line tool
for HTTP, and this package is built on top of the R package 'curl', an
interface to 'libcurl' (<https://curl.haxx.se/libcurl>).
Author: Scott Chamberlain [aut, cre] (<https://orcid.org/0000-0003-1444-9135>)
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between crul versions 0.7.0 dated 2019-01-04 and 0.7.4 dated 2019-03-28
DESCRIPTION | 8 - MD5 | 65 ++++++------ NEWS.md | 18 +++ R/async.R | 155 ++++++++++++++++++++++++------ R/asyncvaried.R | 14 +- R/client.R | 115 ++++++++++++++-------- R/hooks.R |only R/httprequest.R | 10 - R/paginator.R | 78 +++++++++------ R/response.R | 37 +++++-- R/writing-options.R | 9 - README.md | 66 ++++++------ build/vignette.rds |binary inst/doc/async.Rmd | 70 ++++++------- inst/doc/async.html | 89 +++++++++-------- inst/doc/best-practices-api-packages.html | 23 ++-- inst/doc/crul_vignette.Rmd | 98 +++++++++--------- inst/doc/crul_vignette.html | 115 +++++++++++----------- inst/doc/curl-options.html | 13 +- inst/doc/how-to-use-crul.Rmd | 11 -- inst/doc/how-to-use-crul.html | 26 ++--- man/Async.Rd | 22 +++- man/HttpClient.Rd | 12 +- man/HttpRequest.Rd | 4 man/Paginator.Rd | 11 ++ man/hooks.Rd |only man/writing-options.Rd | 9 - tests/testthat/test-async.R | 64 +++++++++--- tests/testthat/test-asyncvaried.R | 9 + tests/testthat/test-client-hooks.R |only tests/testthat/test-client.R | 19 +++ tests/testthat/test-paginator.R | 10 + vignettes/async.Rmd | 70 ++++++------- vignettes/crul_vignette.Rmd | 98 +++++++++--------- vignettes/how-to-use-crul.Rmd | 11 -- 35 files changed, 840 insertions(+), 519 deletions(-)