Title: Plackett-Luce Models for Rankings
Description: Functions to prepare rankings data and fit the Plackett-Luce model
jointly attributed to Plackett (1975) <doi:10.2307/2346567> and Luce
(1959, ISBN:0486441369). The standard Plackett-Luce model is generalized
to accommodate ties of any order in the ranking. Partial rankings, in which
only a subset of items are ranked in each ranking, are also accommodated in
the implementation. Disconnected/weakly connected networks implied by the
rankings may be handled by adding pseudo-rankings with a hypothetical item.
Optionally, a multivariate normal prior may be set on the log-worth
parameters and ranker reliabilities may be incorporated as proposed by
Raman and Joachims (2014) <doi:10.1145/2623330.2623654>. Maximum a
posteriori estimation is used when priors are set. Methods are provided to
estimate standard errors or quasi-standard errors for inference as well as
to fit Plackett-Luce trees. See the package website or vignette for further
details.
Author: Heather Turner [aut, cre] (<https://orcid.org/0000-0002-1256-3375>),
Ioannis Kosmidis [aut] (<https://orcid.org/0000-0003-1556-0302>),
David Firth [aut] (<https://orcid.org/0000-0003-0302-2312>),
Jacob van Etten [ctb] (<https://orcid.org/0000-0001-7554-2558>)
Maintainer: Heather Turner <ht@heatherturner.net>
Diff between PlackettLuce versions 0.2-5 dated 2019-03-20 and 0.2-6 dated 2019-04-01
DESCRIPTION | 36 MD5 | 15 NEWS.md | 5 R/PlackettLuce.R | 1637 ++++++++++++++++++++-------------------- TODO | 1 inst/doc/Overview.html | 41 - tests/testthat/Rplots.pdf |only tests/testthat/test-adherence.R | 387 ++++----- tests/testthat/test-psycho.R | 3 9 files changed, 1074 insertions(+), 1051 deletions(-)
Title: Object Oriented Extensions
Description: Contains attribute operators (%$% and %$%<-), convenience functions and functions for printing objects compactly but informatively. Partly supports function objects and nested matrices.
Author: Abby Spurdle [cre, aut], Emil Bode [ctb]
Maintainer: Abby Spurdle <spurdle.a@gmail.com>
Diff between intoo versions 0.2.0 dated 2019-02-24 and 0.3.0 dated 2019-04-01
intoo-0.2.0/intoo/man/rd_2_print_object_information.Rd |only intoo-0.2.0/intoo/man/rd_3_deprecated.Rd |only intoo-0.3.0/intoo/DESCRIPTION | 14 - intoo-0.3.0/intoo/MD5 | 17 +- intoo-0.3.0/intoo/NAMESPACE | 8 - intoo-0.3.0/intoo/R/intoo.r | 134 +++-------------- intoo-0.3.0/intoo/R/nmatrix.r |only intoo-0.3.0/intoo/R/object_info.r |only intoo-0.3.0/intoo/man/rd_1_attribute_operators.Rd | 8 - intoo-0.3.0/intoo/man/rd_2_convenience_functions_1.Rd |only intoo-0.3.0/intoo/man/rd_3_convenience_functions_2.Rd |only intoo-0.3.0/intoo/man/rd_4_print_object_information.Rd |only intoo-0.3.0/intoo/man/rd_5_nested_matrices.Rd |only intoo-0.3.0/intoo/man/rd_6_nested_matrix_methods.Rd |only 14 files changed, 56 insertions(+), 125 deletions(-)
More information about hurricaneexposure at CRAN
Permanent link
Title: Extreme Value Analysis
Description: Functions for performing extreme value analysis.
Author: Eric Gilleland
Maintainer: Eric Gilleland <ericg@ucar.edu>
Diff between extRemes versions 2.0-9 dated 2018-06-11 and 2.0-10 dated 2019-04-01
DESCRIPTION | 10 +++++----- MD5 | 16 ++++++++-------- NAMESPACE | 4 ++-- R/fitdiagnostics.R | 10 ++++++---- R/fitfuns.R | 6 ++++++ man/Flood.Rd | 2 +- man/Ozone4H.Rd | 2 +- man/damage.Rd | 2 +- man/fevd.Rd | 2 +- 9 files changed, 31 insertions(+), 23 deletions(-)
Title: 'tint' is not 'Tufte'
Description: A 'tufte'-alike style for 'rmarkdown'.
Author: Dirk Eddelbuettel and Jonathan Gilligan
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between tint versions 0.1.0 dated 2018-04-08 and 0.1.1 dated 2019-04-01
ChangeLog | 45 + DESCRIPTION | 13 MD5 | 48 - R/html.R | 22 R/pdf.R | 158 +++++ README.md | 39 + build/vignette.rds |binary inst/NEWS.Rd | 20 inst/doc/tintHTML.Rmd | 4 inst/doc/tintHTML.html | 291 +++++++++- inst/doc/tintPDF.Rmd | 4 inst/doc/tintPDF.pdf |binary inst/examples/simpleHtml.Rmd | 2 inst/examples/simplePdf.Rmd | 2 inst/examples/tintPDFGaramond.Rmd |only inst/examples/tintPDFGaramond.pdf |only inst/examples/tintPDFLato.Rmd |only inst/examples/tintPDFLato.pdf |only inst/rmarkdown/templates/tintBook/resources/tintBook-template.tex | 18 inst/rmarkdown/templates/tintBook/skeleton/skeleton.Rmd | 4 inst/rmarkdown/templates/tintHtml/skeleton/skeleton.Rmd | 4 inst/rmarkdown/templates/tintPdf/resources/tintPdf-template.tex | 18 inst/rmarkdown/templates/tintPdf/skeleton/skeleton.Rmd | 4 man/Custom-templates.Rd |only man/YAML-metadata.Rd |only man/tintHtml.Rd | 32 - vignettes/tintHTML.Rmd | 4 vignettes/tintPDF.Rmd | 4 28 files changed, 637 insertions(+), 99 deletions(-)
Title: Quantitative Analysis of Textual Data
Description: A fast, flexible, and comprehensive framework for
quantitative text analysis in R. Provides functionality for corpus management,
creating and manipulating tokens and ngrams, exploring keywords in context,
forming and manipulating sparse matrices
of documents by features and feature co-occurrences, analyzing keywords, computing feature similarities and
distances, applying content dictionaries, applying supervised and unsupervised machine learning,
visually representing text and text analyses, and more.
Author: Kenneth Benoit [cre, aut, cph]
(<https://orcid.org/0000-0002-0797-564X>),
Kohei Watanabe [aut] (<https://orcid.org/0000-0001-6519-5265>),
Haiyan Wang [aut] (<https://orcid.org/0000-0003-4992-4311>),
Paul Nulty [aut] (<https://orcid.org/0000-0002-7214-4666>),
Adam Obeng [aut] (<https://orcid.org/0000-0002-2906-4775>),
Stefan Müller [aut] (<https://orcid.org/0000-0002-6315-4125>),
Akitaka Matsuo [aut] (<https://orcid.org/0000-0002-3323-6330>),
Jiong Wei Lua [aut],
Patrick O. Perry [aut] (<https://orcid.org/0000-0001-7460-127X>),
Jouni Kuha [aut] (<https://orcid.org/0000-0002-1156-8465>),
Benjamin Lauderdale [aut] (<https://orcid.org/0000-0003-3090-0969>),
William Lowe [aut] (<https://orcid.org/0000-0002-1549-6163>),
Christian Müller [ctb],
Lori Young [dtc] (Lexicoder Sentiment Dictionary 2015),
Stuart Soroka [dtc] (Lexicoder Sentiment Dictionary 2015),
Ian Fellows [cph] (authored wordcloud C source code (modified)),
European Research Council [fnd] (ERC-2011-StG 283794-QUANTESS)
Maintainer: Kenneth Benoit <kbenoit@lse.ac.uk>
Diff between quanteda versions 1.4.1 dated 2019-02-26 and 1.4.3 dated 2019-04-01
DESCRIPTION | 6 - MD5 | 63 ++++++------- NAMESPACE | 1 NEWS.md | 13 ++ R/corpus.R | 1 R/dfm_group.R | 21 +++- R/dfm_sample.R | 23 ++-- R/dfm_weight.R | 146 +++++++++++++++---------------- R/fcm.R | 2 R/textstat_dist_old.R | 6 - R/textstat_frequency.R | 67 +++++++++----- R/textstat_keyness.R | 4 R/textstat_readability.R | 6 - R/tokens_ngrams.R | 2 build/vignette.rds |binary inst/WORDLIST | 2 inst/doc/quickstart.html | 65 +++++++------ man/dfm_group.Rd | 8 + man/dfm_sample.Rd | 11 +- man/dfm_tfidf.Rd | 7 + man/dfm_weight.Rd | 16 +-- man/fcm.Rd | 2 man/textstat_frequency.Rd | 19 +++- man/textstat_readability.Rd | 6 - man/textstat_simil_old.Rd | 6 - man/tokens_ngrams.Rd | 2 src/tokens_chunk_mt.cpp | 2 tests/testthat/test-as.dfm.R | 2 tests/testthat/test-dfm.R | 13 -- tests/testthat/test-dfm_group.R | 38 ++++++-- tests/testthat/test-dfm_sample.R |only tests/testthat/test-dfm_weight.R | 17 +++ tests/testthat/test-textstat_frequency.R | 56 +++++++++-- 33 files changed, 386 insertions(+), 247 deletions(-)
Title: Genomic Region Processing using Tools Such as 'BEDTools',
'BEDOPS' and 'Tabix'
Description: Genomic regions processing using open-source command line tools such as 'BEDTools', 'BEDOPS' and 'Tabix'.
These tools offer scalable and efficient utilities to perform genome arithmetic e.g indexing, formatting and merging.
bedr API enhances access to these tools as well as offers additional utilities for genomic regions processing.
Author: Syed Haider [aut],
Daryl Waggott [aut],
Emilie Lalonde [ctb],
Clement Fung [ctb],
Paul C. Boutros [aut, cre, cph]
Maintainer: Paul C. Boutros <pboutros@mednet.ucla.edu>
Diff between bedr versions 1.0.6 dated 2019-01-12 and 1.0.7 dated 2019-04-01
DESCRIPTION | 14 +++---- MD5 | 20 +++++----- NEWS | 6 +++ R/vcf2bed.R | 6 +++ inst/doc/Using-bedr.Rmd | 2 - inst/doc/Using-bedr.html | 90 ++++++++++++++++++++++----------------------- man/bed2vcf.Rd | 1 man/get.example.regions.Rd | 1 man/is.merged.region.Rd | 2 - man/is.sorted.region.Rd | 1 vignettes/Using-bedr.Rmd | 2 - 11 files changed, 77 insertions(+), 68 deletions(-)
Title: Simulation of Multivariate Linear Model Data
Description: Simulate multivariate linear model data is useful in research and education weather
for comparison or create data with specific properties. This package lets user to simulate
linear model data of wide range of properties with few tuning parameters.
The package also consist of function to create plots for the simulation
objects and A shiny app as RStudio gadget. It can be a handy tool for model comparison,
testing and many other purposes.
Author: Raju Rimal [aut, cre],
Solve Sæbø [aut, ths] (Original Creator of the package)
Maintainer: Raju Rimal <raju.rimal@nmbu.no>
Diff between simrel versions 1.0-1 dated 2014-11-29 and 2.0 dated 2019-04-01
simrel-1.0-1/simrel/R/QR.R |only simrel-1.0-1/simrel/R/bits2int.R |only simrel-1.0-1/simrel/R/householder.R |only simrel-1.0-1/simrel/man/simrel-package.Rd |only simrel-2.0/simrel/DESCRIPTION | 41 +++-- simrel-2.0/simrel/LICENSE |only simrel-2.0/simrel/MD5 | 74 +++++++-- simrel-2.0/simrel/NAMESPACE | 63 +++++++ simrel-2.0/simrel/R/bisimrel.R |only simrel-2.0/simrel/R/extra-test.R |only simrel-2.0/simrel/R/gadget.R |only simrel-2.0/simrel/R/ggsimrelplot.R |only simrel-2.0/simrel/R/global.R |only simrel-2.0/simrel/R/mbrd.R | 96 +++++++++--- simrel-2.0/simrel/R/mbrdsim.R | 86 ++++++++-- simrel-2.0/simrel/R/multisimrel.R |only simrel-2.0/simrel/R/plot-covmat.R |only simrel-2.0/simrel/R/plotextra.R |only simrel-2.0/simrel/R/plotting-functions.R |only simrel-2.0/simrel/R/simrel.R | 238 ++++++++++++++---------------- simrel-2.0/simrel/R/simrelplot.R | 185 ++++++++++++++++------- simrel-2.0/simrel/R/unisimrel.R |only simrel-2.0/simrel/R/utils.R |only simrel-2.0/simrel/build |only simrel-2.0/simrel/inst |only simrel-2.0/simrel/man/AppSimrel.Rd |only simrel-2.0/simrel/man/bisimrel.Rd |only simrel-2.0/simrel/man/cov_mat.Rd |only simrel-2.0/simrel/man/cov_plot_data.Rd |only simrel-2.0/simrel/man/cov_xy.Rd |only simrel-2.0/simrel/man/cov_zw.Rd |only simrel-2.0/simrel/man/cov_zy.Rd |only simrel-2.0/simrel/man/expect_subset.Rd |only simrel-2.0/simrel/man/ggsimrelplot.Rd |only simrel-2.0/simrel/man/mbrd.Rd | 125 +++++++-------- simrel-2.0/simrel/man/mbrdsim.Rd | 118 ++++++++------ simrel-2.0/simrel/man/multisimrel.Rd |only simrel-2.0/simrel/man/parse_parm.Rd |only simrel-2.0/simrel/man/pipe.Rd |only simrel-2.0/simrel/man/plot_beta.Rd |only simrel-2.0/simrel/man/plot_cov.Rd |only simrel-2.0/simrel/man/plot_covariance.Rd |only simrel-2.0/simrel/man/plot_simrel.Rd |only simrel-2.0/simrel/man/prepare_design.Rd |only simrel-2.0/simrel/man/simrel.Rd | 196 +++++++----------------- simrel-2.0/simrel/man/simrelplot.Rd | 88 +++-------- simrel-2.0/simrel/man/tidy_beta.Rd |only simrel-2.0/simrel/man/tidy_lambda.Rd |only simrel-2.0/simrel/man/tidy_sigma.Rd |only simrel-2.0/simrel/man/unisimrel.Rd |only simrel-2.0/simrel/tests |only simrel-2.0/simrel/vignettes |only 52 files changed, 746 insertions(+), 564 deletions(-)
Title: Tracking the Progress of Mc*pply with Progress Bar
Description: A light-weight package helps you track and visualize
the progress of parallel version of vectorized R functions (mc*apply).
Parallelization (mc.core > 1) works only on *nix (Linux, Unix such as macOS) system due to
the lack of fork() functionality, which is essential for mc*apply, on Windows.
Author: Kevin Kuang (aut), Quyu Kong (ctb), Francesco Napolitano (ctb)
Maintainer: Kevin kuang <kvn.kuang@mail.utoronto.ca>
Diff between pbmcapply versions 1.3.1 dated 2019-01-14 and 1.4.1 dated 2019-04-01
DESCRIPTION | 14 + MD5 | 23 +-- NAMESPACE | 18 +- R/debugger.R | 17 +- R/pbmclapply.R | 32 ++-- R/pbmcmapply.R | 32 ++-- R/progressBar.R | 58 ++++---- R/txtProgressBarETA.R | 361 +++++++++++++++++++++++++------------------------- R/utils.R | 102 +++++++++++++- man/pbmclapply.Rd | 136 +++++++++--------- man/pbmcmapply.Rd | 135 +++++++++--------- man/progressBar.Rd | 118 ++++++++-------- src |only 13 files changed, 574 insertions(+), 472 deletions(-)
Title: Computing Optimal Cutpoints in Diagnostic Tests
Description: Computes optimal cutpoints for diagnostic tests or continuous markers. Various approaches for selecting optimal cutoffs have been implemented, including methods based on cost-benefit analysis and diagnostic test accuracy measures (Sensitivity/Specificity, Predictive Values and Diagnostic Likelihood Ratios). Numerical and graphical output for all methods is easily obtained.
Author: Monica Lopez-Raton, Maria Xose Rodriguez-Alvarez
Maintainer: Monica Lopez Raton <monica.lopez.raton@gmail.com>
Diff between OptimalCutpoints versions 1.1-3 dated 2014-11-02 and 1.1-4 dated 2019-04-01
DESCRIPTION | 13 +++++++------ MD5 | 8 ++++---- NAMESPACE | 2 ++ NEWS | 4 ++++ man/OptimalCutpoints-package.Rd | 6 +++--- 5 files changed, 20 insertions(+), 13 deletions(-)
More information about OptimalCutpoints at CRAN
Permanent link
Title: Produce Descriptive and Comparative Tables Easily
Description: Easily create descriptive and comparative tables.
It makes use and integrates directly with the tidyverse family of packages, and pipes.
Tables are produced as data frames/lists of data frames for easy manipulation after creation,
and ready to be saved as csv, or piped to DT::datatable() or pander::pander() to integrate into reports.
Author: Maxime Wack [aut, cre]
Maintainer: Maxime Wack <maximewack@free.fr>
Diff between desctable versions 0.1.5 dated 2019-03-10 and 0.1.6 dated 2019-04-01
desctable-0.1.5/desctable/man/group_by.Rd |only desctable-0.1.5/desctable/man/pipe.Rd |only desctable-0.1.6/desctable/DESCRIPTION | 6 +- desctable-0.1.6/desctable/MD5 | 13 ++--- desctable-0.1.6/desctable/NEWS | 6 ++ desctable-0.1.6/desctable/R/imports.R | 19 +------ desctable-0.1.6/desctable/build/vignette.rds |binary desctable-0.1.6/desctable/inst/doc/desctable.html | 54 +++++++++++----------- desctable-0.1.6/desctable/man/reexports.Rd |only 9 files changed, 45 insertions(+), 53 deletions(-)
Title: Numerical Methods and Optimization in Finance
Description: Functions, examples and data from the book
"Numerical Methods and Optimization in Finance" by M.
Gilli, D. Maringer and E. Schumann (2011), ISBN
978-0123756626. The package provides implementations of
several optimisation heuristics, such as Differential
Evolution, Genetic Algorithms and Threshold Accepting.
There are also functions for the valuation of financial
instruments, such as bonds and options, and functions that
help with stochastic simulations.
Author: Enrico Schumann [aut, cre] (<https://orcid.org/0000-0001-7601-6576>)
Maintainer: Enrico Schumann <es@enricoschumann.net>
Diff between NMOF versions 1.4-3 dated 2018-06-26 and 1.6-0 dated 2019-04-01
DESCRIPTION | 13 +++--- MD5 | 62 ++++++++++++++++--------------- NAMESPACE | 9 ++++ NEWS | 23 +++++++++++ R/DEopt.R | 20 ++++++++-- R/LSopt.R | 25 +++++++++--- R/NSf.R | 14 +++---- R/SAopt.R | 4 ++ R/TAopt.R | 29 ++++++++++++-- R/drawdown.R | 12 +++--- R/market_data.R |only R/portfolio.R | 79 ++++++++++++++++++++++++++++++++-------- build/vignette.rds |binary inst/doc/An_overview.pdf |binary inst/doc/DEnss.pdf |binary inst/doc/LSqueens.Rnw | 6 +-- inst/doc/LSqueens.pdf |binary inst/doc/LSselect.pdf |binary inst/doc/PSlms.pdf |binary inst/doc/TAportfolio.pdf |binary inst/doc/qTableEx.pdf |binary inst/doc/repair.pdf |binary inst/doc/vectorise.pdf |binary inst/unitTests/runTests.R | 2 - inst/unitTests/test_results.txt | 56 ++++++++++++++-------------- man/French.Rd |only man/LSopt.Rd | 11 +++++ man/NMOF-package.Rd | 41 +++++++++++--------- man/SAopt.Rd | 11 +++++ man/Shiller.Rd |only man/TAopt.Rd | 16 ++++++++ man/minvar.Rd | 6 ++- man/mvFrontier.Rd |only vignettes/LSqueens.Rnw | 6 +-- 34 files changed, 312 insertions(+), 133 deletions(-)
Title: Sensitivity Analyses for Unmeasured Confounding or Selection
Bias in Observational Studies and Meta-Analyses
Description: Conducts sensitivity analyses for unmeasured confounding for either an observational study or a meta-analysis of observational studies. For a single observational study, the package reports E-values, defined as the minimum strength of association on the risk ratio scale that an unmeasured confounder would need to have with both the treatment and the outcome to fully explain away a specific treatment-outcome association, conditional on the measured covariates. You can use one of the evalues.XX() functions to compute E-values for the relevant outcome types. Outcome types include risk ratios, odds ratio with common or rare outcomes, hazard ratios with common or rare outcomes, and standardized differences in outcomes. Optionally, you can use the bias_plot() function to plot the bias factor as a function of two sensitivity parameters. (See VanderWeele & Ding, 2017 [<http://annals.org/aim/article/2643434>] for details.) For a meta-analysis, use the function confounded_meta to compute point estimates and inference for: (1) the proportion of studies with true causal effect sizes more extreme than a specified threshold of scientific importance; and (2) the minimum bias factor and confounding strength required to reduce to less than a specified threshold the proportion of studies with true effect sizes of scientifically significant size. The functions sens_plot() and sens_table() create plots and tables for visualizing these meta-analysis metrics across a range of bias values. (See Mathur & VanderWeele, 2019 [<https://amstat.tandfonline.com/doi/full/10.1080/01621459.2018.1529598#.XKIJtOtKjdc>] for details.) Most of the analyses available in this package can also be conducted using web-based graphical interfaces (for a single observational study: [<https://evalue.hmdc.harvard.edu>]; for a meta-analysis: [<https://mmathur.shinyapps.io/meta_gui_2/>]).
Author: Maya B. Mathur, Peng Ding, Louisa H. Smith, Tyler J. VanderWeele
Maintainer: Maya B. Mathur <mmathur@stanford.edu>
Diff between EValue versions 1.1.5 dated 2018-09-18 and 2.0.0 dated 2019-04-01
DESCRIPTION | 17 ++--- MD5 | 22 ++++-- NAMESPACE | 5 + R/EValue.R | 153 ++++++++++++++++++++++----------------------- R/EValue_selection.R |only inst/CITATION | 22 +++++- man/evalues.OLS.Rd |only man/scrape_meta.Rd | 8 -- man/sens_plot.Rd | 6 - man/sens_table.Rd | 3 man/svalues.HR.Rd |only man/svalues.OR.Rd |only man/svalues.RR.Rd |only man/threshold_selection.Rd |only tests/testthat/testthat.R | 123 ++++++++++++++++++++++++++++-------- 15 files changed, 225 insertions(+), 134 deletions(-)
Title: Water Resources System Simulator
Description: Water resources system simulator is a tool for simulation and analysis of large-scale water resources systems. 'WRSS' proposes functions and methods for construction, simulation and analysis of primary storage and hydropower water resources features (e.g. reservoirs, aquifers, and etc.) based on Standard Operating Policy (SOP).
Author: Rezgar Arabzadeh; Parisa Aberi; Kaveh Panaghi; Shahab Araghinejad; Majid Montaseri
Maintainer: Rezgar Arabzadeh <rezgararabzadeh@ut.ac.ir>
Diff between WRSS versions 2.2 dated 2019-02-16 and 2.3 dated 2019-04-01
DESCRIPTION | 8 +-- MD5 | 58 +++++++++++----------- R/createAquifer.default.R | 2 R/createDemandSite.default.R | 18 +++---- R/createDiversion.default.R | 25 ++++----- R/createJunction.default.R | 4 - R/createReservoir.default.R | 12 +--- R/createRiver.default.R | 10 +-- R/set.as.R |only R/sim.base.R | 11 ++-- man/WRSS-package.Rd | 7 +- man/addObjectToArea.Rd | 101 +++++++++++++++++++++++++--------------- man/createAquifer.Rd | 2 man/createAquifer.base.Rd | 2 man/createAquifer.default.Rd | 14 +++-- man/createDemandSite.Rd | 4 - man/createDemandSite.base.Rd | 4 - man/createDemandSite.default.Rd | 10 +-- man/createDiversion.Rd | 4 - man/createDiversion.base.Rd | 4 - man/createDiversion.default.Rd | 11 ++-- man/createJunction.Rd | 2 man/createJunction.base.Rd | 2 man/createJunction.default.Rd | 2 man/createReservoir.Rd | 4 - man/createReservoir.base.Rd | 6 +- man/createReservoir.default.Rd | 4 - man/createRiver.Rd | 4 - man/createRiver.base.Rd | 4 - man/createRiver.default.Rd | 12 ++-- man/set.as.Rd |only 31 files changed, 194 insertions(+), 157 deletions(-)
Title: Prediction Rule Ensembles
Description: Derives prediction rule ensembles (PREs). Largely follows the
procedure for deriving PREs as described in Friedman & Popescu (2008;
<DOI:10.1214/07-AOAS148>), with adjustments and improvements. The
main function pre() derives prediction rule ensembles consisting of
rules and/or linear terms for continuous, binary, count, multinomial,
and multivariate continuous responses. Function gpe() derives
generalized prediction ensembles, consisting of rules, hinge and linear
functions of the predictor variables.
Author: Marjolein Fokkema [aut, cre],
Benjamin Christoffersen [aut]
Maintainer: Marjolein Fokkema <m.fokkema@fsw.leidenuniv.nl>
Diff between pre versions 0.6.0 dated 2018-08-03 and 0.7.0 dated 2019-04-01
pre-0.6.0/pre/inst/README-figures/README-unnamed-chunk-12-1.png |only pre-0.6.0/pre/inst/README-figures/README-unnamed-chunk-4-1.png |only pre-0.6.0/pre/inst/README-figures/README-unnamed-chunk-6-1.png |only pre-0.6.0/pre/inst/README-figures/README-unnamed-chunk-8-1.png |only pre-0.6.0/pre/inst/README-figures/README-unnamed-chunk-9-1.png |only pre-0.7.0/pre/DESCRIPTION | 12 pre-0.7.0/pre/MD5 | 79 pre-0.7.0/pre/NAMESPACE | 11 pre-0.7.0/pre/NEWS | 16 pre-0.7.0/pre/R/caret_pre_model.R | 37 pre-0.7.0/pre/R/gpe.R | 12 pre-0.7.0/pre/R/pre.R | 1011 +++++++--- pre-0.7.0/pre/R/utils.R | 215 +- pre-0.7.0/pre/README.md | 137 - pre-0.7.0/pre/inst/README-figures/README-corplot-1.png |only pre-0.7.0/pre/inst/README-figures/README-importance-1.png |only pre-0.7.0/pre/inst/README-figures/README-interact-1.png |only pre-0.7.0/pre/inst/README-figures/README-pairplot-1.png |only pre-0.7.0/pre/inst/README-figures/README-singleplot-1.png |only pre-0.7.0/pre/inst/README-figures/README-treeplot-1.png |only pre-0.7.0/pre/inst/README-figures/README-unnamed-chunk-10-1.png |only pre-0.7.0/pre/inst/README-figures/README-unnamed-chunk-11-1.png |binary pre-0.7.0/pre/man/bsnullinteract.Rd | 14 pre-0.7.0/pre/man/cvpre.Rd | 6 pre-0.7.0/pre/man/explain.Rd |only pre-0.7.0/pre/man/gpe_rules_pre.Rd | 21 pre-0.7.0/pre/man/importance.Rd | 31 pre-0.7.0/pre/man/interact.Rd | 20 pre-0.7.0/pre/man/maxdepth_sampler.Rd | 2 pre-0.7.0/pre/man/pairplot.Rd | 21 pre-0.7.0/pre/man/pre.Rd | 113 - pre-0.7.0/pre/man/predict.pre.Rd | 2 pre-0.7.0/pre/man/rTerm.Rd | 2 pre-0.7.0/pre/man/singleplot.Rd | 30 pre-0.7.0/pre/tests/testthat/helper.R | 4 pre-0.7.0/pre/tests/testthat/previous_results/PimaIndiansDiabetes_w_pre_LR.RDS |binary pre-0.7.0/pre/tests/testthat/previous_results/airquality_w_bsnullinteract.RDS |binary pre-0.7.0/pre/tests/testthat/previous_results/airquality_w_pre.RDS |binary pre-0.7.0/pre/tests/testthat/previous_results/airquality_w_pre_with_multivariate_response.RDS |binary pre-0.7.0/pre/tests/testthat/previous_results/airquality_w_pre_without_LR.RDS |binary pre-0.7.0/pre/tests/testthat/previous_results/airquality_w_pre_without_linear_terms.RDS |binary pre-0.7.0/pre/tests/testthat/previous_results/gpe_tree_1.RDS |binary pre-0.7.0/pre/tests/testthat/previous_results/gpe_tree_3.RDS |binary pre-0.7.0/pre/tests/testthat/test_gpe.R | 37 pre-0.7.0/pre/tests/testthat/test_gpe_misc.R | 5 pre-0.7.0/pre/tests/testthat/test_pre_misc.R | 73 pre-0.7.0/pre/tests/testthat/tests_pre.R | 50 47 files changed, 1423 insertions(+), 538 deletions(-)
Title: Interface to Praat
Description: Read, write and manipulate 'Praat' TextGrid, PitchTier, Pitch, IntensityTier, Formant, and Collection files <http://www.fon.hum.uva.nl/praat/>.
Author: Tomas Boril [aut, cre]
Maintainer: Tomas Boril <borilt@gmail.com>
Diff between rPraat versions 1.2.0-1 dated 2019-03-30 and 1.2.0-2 dated 2019-04-01
DESCRIPTION | 6 +++--- MD5 | 20 ++++++++++---------- NEWS.md | 4 ++++ R/col.R | 2 ++ R/formant.R | 2 ++ R/it.R | 2 ++ R/pitch.R | 2 ++ R/pt.R | 2 ++ R/rpraat.R | 2 +- R/tg.R | 2 ++ README.md | 31 ++++++++++++++++--------------- 11 files changed, 46 insertions(+), 29 deletions(-)
Title: Generate Alluvial Plots with a Single Line of Code
Description: Alluvial plots are similar to sankey diagrams and visualise categorical data
over multiple dimensions as flows. (Rosvall M, Bergstrom CT (2010) Mapping Change in
Large Networks. PLoS ONE 5(1): e8694. <doi:10.1371/journal.pone.0008694>
Their graphical grammar however is a bit more complex then that of a regular x/y
plots. The 'ggalluvial' package made a great job of translating that grammar into
'ggplot2' syntax and gives you many options to tweak the appearance of an alluvial
plot, however there still remains a multi-layered complexity that makes it difficult
to use 'ggalluvial' for explorative data analysis. 'easyalluvial' provides a simple
interface to this package that allows you to produce a decent alluvial plot from any
dataframe in either long or wide format from a single line of code while also handling
continuous data. It is meant to allow a quick visualisation of entire dataframes
with a focus on different colouring options that can make alluvial plots a great
tool for data exploration.
Author: Bjoern Koneswarakantha [aut, cre] (<https://orcid.org/
0000-0003-4585-7799>)
Maintainer: Bjoern Koneswarakantha <datistics@gmail.com>
Diff between easyalluvial versions 0.1.8 dated 2019-01-15 and 0.2.0 dated 2019-04-01
DESCRIPTION | 12 MD5 | 126 + NAMESPACE | 21 NEWS.md | 17 R/alluvial_long.R | 112 + R/alluvial_model_response.R |only R/alluvial_wide.R | 229 +-- R/data.R | 39 R/manip.R | 65 R/palette.R | 5 R/plot_condensation.R | 13 R/plot_imp.R |only R/plot_marginal_hist.R |only README.md | 80 - data/mtcars2.rda |only data/quarterly_sunspots.rda |only man/add_imp_plot.Rd |only man/add_marginal_histograms.Rd |only man/alluvial_long.Rd | 9 man/alluvial_model_response.Rd |only man/alluvial_model_response_caret.Rd |only man/alluvial_wide.Rd | 83 - man/figures/README-plot_long-1.png |binary man/figures/README-unnamed-chunk-3-1.png |only man/figures/README-unnamed-chunk-4-1.png |only man/figures/README-wide_plot-1.png |binary man/get_data_space.Rd |only man/get_pdp_predictions.Rd |only man/manip_bin_numerics.Rd | 12 man/mtcars2.Rd |only man/palette_qualitative.Rd | 3 man/plot_all_hists.Rd |only man/plot_condensation.Rd | 13 man/plot_hist.Rd |only man/plot_imp.Rd |only man/quarterly_sunspots.Rd |only man/tidy_imp.Rd |only man/use_e1071.Rd |only tests/figs/alluvial-long/long-all-nums-plus-fill.svg |only tests/figs/alluvial-long/long-all-nums.svg |only tests/figs/alluvial-long/long-fill-carrier.svg | 974 +++++++------- tests/figs/alluvial-long/long-fill-first.svg | 128 - tests/figs/alluvial-long/long-fill-last.svg | 128 - tests/figs/alluvial-long/long-fill-to-right.svg | 974 +++++++------- tests/figs/alluvial-long/long-fill-value.svg | 128 - tests/figs/alluvial-long/long-reorder-carrier-by-size.svg | 974 +++++++------- tests/figs/alluvial-long/long-reorder-x-levels.svg | 128 - tests/figs/alluvial-long/long-reorder-y-levels.svg | 128 - tests/figs/alluvial-long/long-sprecify-color.svg | 144 +- tests/figs/alluvial-model-response |only tests/figs/alluvial-wide/wide-all-flows.svg | 284 ++-- tests/figs/alluvial-wide/wide-first.svg | 294 ++-- tests/figs/alluvial-wide/wide-islr-cars-rotate-labels.svg | 734 +++++----- tests/figs/alluvial-wide/wide-islr-cars.svg | 734 +++++----- tests/figs/alluvial-wide/wide-last.svg | 294 ++-- tests/figs/alluvial-wide/wide-reorder-y-levels.svg | 284 ++-- tests/figs/alluvial-wide/wide-values.svg | 284 ++-- tests/figs/marginal-histograms |only tests/figs/plot-imp |only tests/testthat/Rplots.pdf |only tests/testthat/test_alluvial_long.R | 11 tests/testthat/test_alluvial_model_response.R |only tests/testthat/test_alluvial_wide.R | 49 tests/testthat/test_manip.R | 73 - tests/testthat/test_plot_imp.R |only tests/testthat/test_plot_marginal_histograms.R |only 66 files changed, 3972 insertions(+), 3614 deletions(-)
Title: Scoring Modeling and Optimal Binning
Description: A set of functions to build a scoring model from beginning to end, leading the user
to follow an efficient and organized development process, reducing significantly the time
spent on data exploration, variable selection, feature engineering, binning and model selection
among other recurrent tasks.
The package also incorporates monotonic and customized binning, scaling capabilities that
transforms logistic coefficients into points for a better business understanding and
calculates and visualizes classic performance metrics of a classification model.
Author: Herman Jopia
Maintainer: Herman Jopia <hjopia@gmail.com>
Diff between smbinning versions 0.8 dated 2019-01-07 and 0.9 dated 2019-04-01
DESCRIPTION | 10 ++--- MD5 | 7 ++- R/smbinning.R | 85 ++++++++++++++++++++++++++++++++++++++++++++- data/smbsimdf3.RData |only man/smbinning.logitrank.Rd |only man/smbsimdf3.Rd |only 6 files changed, 94 insertions(+), 8 deletions(-)
Title: Portfolio Management with R
Description: Functions and examples for 'Portfolio
Management with R': backtesting investment and
trading strategies, computing profit/loss and
returns, analysing trades, handling lists of
transactions, reporting, and more.
Author: Enrico Schumann [aut, cre] (<https://orcid.org/0000-0001-7601-6576>)
Maintainer: Enrico Schumann <es@enricoschumann.net>
Diff between PMwR versions 0.10-1 dated 2018-10-28 and 0.11-0 dated 2019-04-01
ChangeLog | 155 ++++++++++ DESCRIPTION | 18 - MD5 | 70 ++-- NAMESPACE | 4 NEWS | 67 +++- R/NAVseries.R | 560 ++++++++++++++++++++++++--------------- R/btest.R | 29 +- R/internal.R | 8 R/journal.R | 32 +- R/pl.R | 19 - R/plot_trading_hours.R | 6 R/position.R | 111 +++++-- R/returns.R | 246 ++++++++--------- R/trades.R | 23 - R/valuation.R | 87 +++--- build/vignette.rds |binary inst/doc/An_overview_of_PMwR.pdf |binary inst/doc/Computing_returns.R | 26 - inst/doc/Computing_returns.Rnw | 54 ++- inst/doc/Computing_returns.pdf |binary inst/doc/Drawdowns_streaks.pdf |binary inst/doc/FinTeX.R | 47 +-- inst/doc/FinTeX.Rnw | 38 +- inst/doc/FinTeX.pdf |binary inst/doc/pl_open_positions.pdf |binary inst/doc/q32.pdf |binary inst/unitTests/test_results.txt | 31 +- inst/unitTests/ut_PMwR.R | 432 ++++++++++++++++++++++++++---- man/NAVseries.Rd | 37 ++ man/PMwR-internal.Rd | 5 man/btest.Rd | 320 +++++++++++++--------- man/plot_trading_hours.Rd | 27 + man/position.Rd | 6 man/returns.Rd | 94 ++++-- vignettes/Computing_returns.Rnw | 54 ++- vignettes/FinTeX.Rnw | 38 +- 36 files changed, 1763 insertions(+), 881 deletions(-)
Title: Downloading Time Series from ALFRED Database for Various
Vintages
Description: Provides direct access to the ALFRED (<https://alfred.stlouisfed.org>) and FRED (<https://fred.stlouisfed.org>) databases.
Its functions return tidy data frames for different releases of the specified time series.
Note that this product uses the FRED© API but is not endorsed or certified by the Federal Reserve Bank of St. Louis.
Author: Onno Kleen [aut, cre] (<https://orcid.org/0000-0003-4731-4640>)
Maintainer: Onno Kleen <r@onnokleen.de>
Diff between alfred versions 0.1.6 dated 2018-04-06 and 0.1.7 dated 2019-04-01
DESCRIPTION | 12 ++-- MD5 | 10 ++-- NEWS.md | 1 build/vignette.rds |binary inst/doc/alfred.html | 100 ++++++++++++++++++++++++----------------- tests/testthat/test_download.R | 14 ----- 6 files changed, 72 insertions(+), 65 deletions(-)
Title: Survival Analysis
Description: Contains the core survival analysis routines, including
definition of Surv objects,
Kaplan-Meier and Aalen-Johansen (multi-state) curves, Cox models,
and parametric accelerated failure time models.
Author: Terry M Therneau [aut, cre],
Thomas Lumley [ctb, trl] (original S->R port and R maintainer until
2009)
Maintainer: Terry M Therneau <therneau.terry@mayo.edu>
Diff between survival versions 2.44-1 dated 2019-03-30 and 2.44-1.1 dated 2019-04-01
DESCRIPTION | 6 +++--- MD5 | 4 ++-- src/survfitkm.c | 2 +- 3 files changed, 6 insertions(+), 6 deletions(-)
More information about PublicationBias at CRAN
Permanent link
More information about robustSingleCell at CRAN
Permanent link
Title: Spatial Individual-Plant Modelling
Description: A platform for experimenting with spatially explicit individual-based vegetation models.
Author: Oscar Garcia
Maintainer: Oscar Garcia <garcia@dasometrics.net>
Diff between siplab versions 1.3 dated 2018-07-29 and 1.4 dated 2019-04-01
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- R/size.sel.R | 2 +- inst/NEWS | 6 ++++++ man/assimilation.Rd | 4 ++-- man/boreas.Rd | 8 ++++---- man/kernel.Rd | 4 ++-- man/pairwise.Rd | 2 +- man/siplab-package.Rd | 6 +++--- 9 files changed, 31 insertions(+), 25 deletions(-)
Title: Rho for Inter Rater Reliability
Description: Rho is used to test the generalization of inter rater reliability
(IRR) statistics. Calculating rho starts by generating a large number of
simulated, fully-coded data sets: a sizable collection of hypothetical
populations, all of which have a kappa value below a given threshold -- which
indicates unacceptable agreement. Then kappa is calculated on a sample from
each of those sets in the collection to see if it is equal to or higher than
the kappa in then real sample. If less than five percent of the distribution
of samples from the simulated data sets is greater than actual observed kappa,
the null hypothesis is rejected and one can conclude that if the two raters had
coded the rest of the data, we would have acceptable agreement (kappa above the
threshold).
Author: Brendan Eagan [aut],
Brad Rogers [aut],
Rebecca Pozen [aut],
Cody L Marquart [cre, aut],
David Williamson Shaffer [aut]
Maintainer: Cody L Marquart <cody.marquart@wisc.edu>
Diff between rhoR versions 1.2.1.0 dated 2019-02-07 and 1.2.1.1 dated 2019-04-01
DESCRIPTION | 6 +++--- MD5 | 10 +++++++--- R/createSimulatedCodeSet.R | 40 ++++++++++++++++++++++++++++++++++++++-- demo |only man/createSimulatedCodeSet.Rd | 4 +++- 5 files changed, 51 insertions(+), 9 deletions(-)
Title: Tools for Biostatistics, Public Policy, and Law
Description: Statistical tests widely utilized in biostatistics, public policy, and law. Along with the well-known tests for equality of means and variances, randomness, and measures of relative variability, the package contains new robust tests of symmetry, omnibus and directional tests of normality, and their graphical counterparts such as robust QQ plot, robust trend tests for variances, etc. All implemented tests and methods are illustrated by simulations and real-life examples from legal statistics, economics, and biostatistics.
Author: Joseph L. Gastwirth [aut],
Yulia R. Gel [aut],
W. L. Wallace Hui [aut],
Vyacheslav Lyubchich [aut, cre],
Weiwen Miao [aut],
Kimihiro Noguchi [aut]
Maintainer: Vyacheslav Lyubchich <lyubchic@umces.edu>
Diff between lawstat versions 3.2 dated 2017-11-23 and 3.3 dated 2019-04-01
DESCRIPTION | 21 MD5 | 112 +-- NAMESPACE | 67 + R/bartels.test.R | 138 ++- R/bias.R |only R/blackhire.R |only R/brunner.munzel.test.R | 78 +- R/cd.R | 68 + R/cmh.test.R | 130 ++- R/data1963.R |only R/gini.index.R | 95 +- R/j.maad.R | 50 - R/laplace.test.R | 98 +- R/lawstat.R |only R/levene.test.R | 873 ++++++++++++------------ R/lnested.test.R | 1484 ++++++++++++++++++++++++------------------ R/lorenz.curve.R | 339 ++++++--- R/ltrend.test.R | 1375 +++++++++++++++++++++----------------- R/michigan.R |only R/mma.test.R | 358 ++++++---- R/neuhauser.hothorn.test.R | 1064 ++++++++++++++++-------------- R/nig.parameter.R | 102 ++ R/popdata.R |only R/pot.R |only R/rjb.test.R | 315 +++++--- R/rlm.test.R | 266 ++++--- R/robust.mmm.test.R | 432 +++++++----- R/rqq.R | 145 +++- R/runs.test.R | 193 +++-- R/sj.test.R | 158 ++-- R/symmetry.test.R | 257 +++++-- R/zuni.R |only build |only inst |only man/bartels.test.Rd | 57 - man/bias.Rd | 37 - man/blackhire.Rd | 22 man/brunner.munzel.test.Rd | 80 +- man/cd.Rd | 53 - man/cmh.test.Rd | 143 +--- man/data1963.Rd | 38 - man/gini.index.Rd | 58 - man/j.maad.Rd | 48 - man/laplace.test.Rd | 71 -- man/levene.test.Rd | 202 ++--- man/lnested.test.Rd | 211 ++--- man/lorenz.curve.Rd | 113 +-- man/ltrend.test.Rd | 213 ++---- man/michigan.Rd | 21 man/mma.test.Rd | 82 +- man/neuhauser.hothorn.test.Rd | 183 ++--- man/nig.parameter.Rd | 92 +- man/popdata.Rd | 38 - man/pot.Rd | 53 - man/rjb.test.Rd | 109 +-- man/rlm.test.Rd | 81 +- man/robust.mmm.test.Rd | 84 +- man/rqq.Rd | 146 ++-- man/runs.test.Rd | 72 +- man/sj.test.Rd | 67 - man/symmetry.test.Rd | 111 +-- man/zuni.Rd | 50 - 62 files changed, 6041 insertions(+), 4712 deletions(-)