Title: Optimally Robust Estimation
Description: Optimally robust estimation in general smoothly parameterized models using S4
classes and methods.
Author: Matthias Kohl [cre, cph],
Mykhailo Pupashenko [ctb] (contributed wrapper functions for diagnostic
plots),
Gerald Kroisandt [ctb] (contributed testing routines),
Peter Ruckdeschel [aut, cph]
Maintainer: Matthias Kohl <Matthias.Kohl@stamats.de>
Diff between ROptEst versions 1.1.0 dated 2018-08-03 and 1.2.0 dated 2019-04-07
DESCRIPTION | 30 ++++---- MD5 | 121 ++++++++++++++++---------------- NAMESPACE | 6 + R/AllGeneric.R | 3 R/CheckMakeContIC.R |only R/L1L2normL2deriv.R | 9 +- R/LowerCaseMultivariate.R | 30 ++++---- R/RMXEOMSEMBREOBRE.R | 32 +++++--- R/cniperCont.R | 79 ++++++++++++--------- R/comparePlot.R | 7 + R/getAsRisk.R | 10 +- R/getComp.R | 4 - R/getInfCent.R | 20 +++-- R/getInfClip.R | 14 ++- R/getInfGamma.R | 22 ++++- R/getInfLM.R | 33 ++++---- R/getInfRad.R | 4 - R/getInfRobIC_asAnscombe.R | 13 ++- R/getInfRobIC_asBias.R | 37 ++++++--- R/getInfRobIC_asCov.R | 6 - R/getInfRobIC_asGRisk.R | 56 ++++++++------ R/getInfRobIC_asHampel.R | 24 +++--- R/getInfStand.R | 26 ++++-- R/getInfV.R | 52 ++++++++----- R/getMaxIneff.R | 6 - R/getModifyIC.R | 21 +++-- R/getRadius.R | 2 R/getReq.R | 12 +-- R/getRiskIC.R | 24 +++--- R/getStartIC.R | 21 ++++- R/getStartIClcsc.R |only R/internal.roptest.R | 8 +- R/leastFavorableRadius.R | 29 ++++--- R/optIC.R | 10 +- R/optRisk.R | 2 R/radiusMinimaxIC.R | 12 ++- R/roptest.new.R | 122 ++++++++++++++++++++++++-------- R/updateNorm.R | 2 inst/NEWS | 85 ++++++++++++++++++++++ inst/scripts/MBRE.R | 12 +-- man/0ROptEst-package.Rd | 165 +++++++++++++++++++++----------------------- man/ORobEstimate-class.Rd | 14 +++ man/RMXEOMSEMBREOBRE.Rd | 44 ++++++++++- man/checkmakeIC.Rd |only man/getBiasIC.Rd | 5 - man/getInfCent.Rd | 10 +- man/getInfClip.Rd | 6 - man/getInfGamma.Rd | 8 +- man/getInfRad.Rd | 2 man/getInfStand.Rd | 16 ++-- man/getInfV.Rd | 12 +-- man/getMaxIneff.Rd | 4 - man/getReq.Rd | 3 man/getRiskIC.Rd | 8 +- man/getStartIC-methods.Rd | 16 +++- man/getinfLM.Rd | 4 - man/inputGenerator.Rd | 22 +++++ man/internals.Rd | 12 +-- man/leastFavorableRadius.Rd | 4 - man/minmaxBias.Rd | 6 - man/optIC.Rd | 9 +- man/robest.Rd | 25 ++++++ man/roptest.Rd | 60 +++++++++++++++- 63 files changed, 953 insertions(+), 508 deletions(-)
Title: The Uniform Manifold Approximation and Projection (UMAP) Method
for Dimensionality Reduction
Description: An implementation of the Uniform Manifold Approximation and
Projection dimensionality reduction by McInnes et al. (2018)
<arXiv:1802.03426>. It also provides means to transform new data and to
carry out supervised dimensionality reduction. An implementation of the
related LargeVis method of Tang et al. (2016) <arXiv:1602.00370> is also
provided. This is a complete re-implementation in R (and C++, via the 'Rcpp'
package): no Python installation is required. See the uwot website
(<https://github.com/jlmelville/uwot>) for more documentation and examples.
Author: James Melville [aut, cre]
Maintainer: James Melville <jlmelville@gmail.com>
Diff between uwot versions 0.1.2 dated 2019-04-06 and 0.1.3 dated 2019-04-07
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- NEWS.md | 19 +++++++++++++++++++ R/RcppExports.R | 16 ++++++++-------- R/neighbors.R | 15 +++++++++++++-- src/RcppExports.cpp | 32 ++++++++++++++++---------------- src/nn_parallel.cpp | 52 +++++++++++++++++++++++++++++----------------------- src/smooth_knn.cpp | 2 +- 8 files changed, 96 insertions(+), 60 deletions(-)
Title: Quick Serialization of R Objects
Description: Provides functions for quickly writing and reading any R object to and from disk.
Author: Travers Ching [aut, cre, cph],
Yann Collet [ctb, cph] (Yann Collet is the author of the bundled zstd
and lz4 code),
Facebook, Inc. [cph] (Facebook is the copyright holder of the bundled
zstd code),
Reichardt Tino [ctb, cph] (Contributor/copyright holder of zstd bundled
code),
Skibinski Przemyslaw [ctb, cph] (Contributor/copyright holder of zstd
bundled code),
Mori Yuta [ctb, cph] (Contributor/copyright holder of zstd bundled
code),
Romain Francois [ctb, cph] (Derived example/tutorials for Alt-Rep
structures),
Francesc Alted [ctb, cph] (Shuffling routines derived from Blosc
library)
Maintainer: Travers Ching <traversc@gmail.com>
Diff between qs versions 0.14.1 dated 2019-03-02 and 0.15.1 dated 2019-04-07
qs-0.14.1/qs/src/qs_header.h |only qs-0.14.1/qs/vignettes/vignette.md |only qs-0.15.1/qs/DESCRIPTION | 8 - qs-0.15.1/qs/MD5 | 52 ++++++------ qs-0.15.1/qs/NAMESPACE | 5 - qs-0.15.1/qs/R/RcppExports.R | 16 ++- qs-0.15.1/qs/R/help_files.R | 65 ++++++++++++--- qs-0.15.1/qs/README.md | 46 +++++----- qs-0.15.1/qs/configure | 4 qs-0.15.1/qs/configure.ac | 4 qs-0.15.1/qs/inst/doc/vignette.R | 4 qs-0.15.1/qs/inst/doc/vignette.html | 22 ++--- qs-0.15.1/qs/inst/doc/vignette.rmd | 17 ++- qs-0.15.1/qs/man/qinspect.Rd |only qs-0.15.1/qs/man/qread.Rd | 14 ++- qs-0.15.1/qs/man/qsave.Rd | 11 ++ qs-0.15.1/qs/src/BLOSC/shuffle_routines.h | 2 qs-0.15.1/qs/src/BLOSC/unshuffle_routines.h | 2 qs-0.15.1/qs/src/LZ4/lz4hc.c |only qs-0.15.1/qs/src/LZ4/lz4hc.h |only qs-0.15.1/qs/src/Makevars.in | 2 qs-0.15.1/qs/src/Makevars.win | 4 qs-0.15.1/qs/src/RcppExports.cpp | 45 ++++++---- qs-0.15.1/qs/src/qs_common.h |only qs-0.15.1/qs/src/qs_deserialization.h |only qs-0.15.1/qs/src/qs_functions.cpp | 121 ++++++++++++++++------------ qs-0.15.1/qs/src/qs_inspect.h |only qs-0.15.1/qs/src/qs_mt_deserialization.h |only qs-0.15.1/qs/src/qs_mt_serialization.h |only qs-0.15.1/qs/src/qs_serialization.h |only qs-0.15.1/qs/vignettes/dataframe_bench.png |binary qs-0.15.1/qs/vignettes/qshex.png |only qs-0.15.1/qs/vignettes/vignette.rmd | 17 ++- 33 files changed, 293 insertions(+), 168 deletions(-)
Title: Tools for Eurostat Open Data
Description: Tools to download data from the Eurostat database
<http://ec.europa.eu/eurostat> together with search and
manipulation utilities.
Author: Leo Lahti [aut, cre] (<https://orcid.org/0000-0001-5537-637X>),
Janne Huovari [aut],
Markus Kainu [aut],
Przemyslaw Biecek [aut],
Joona Lehtomaki [ctb],
Francois Briatte [ctb],
Oliver Reiter [ctb]
Maintainer: Leo Lahti <leo.lahti@iki.fi>
Diff between eurostat versions 3.3.1.3 dated 2019-02-03 and 3.3.4 dated 2019-04-07
eurostat-3.3.1.3/eurostat/inst/doc/eurostat_tutorial.html |only eurostat-3.3.1.3/eurostat/vignettes/tmp.R |only eurostat-3.3.4/eurostat/DESCRIPTION | 24 - eurostat-3.3.4/eurostat/MD5 | 88 ++--- eurostat-3.3.4/eurostat/NAMESPACE | 8 eurostat-3.3.4/eurostat/NEWS | 6 eurostat-3.3.4/eurostat/R/cut_to_classes.R | 3 eurostat-3.3.4/eurostat/R/data_countries.R | 1 eurostat-3.3.4/eurostat/R/firstlib.R | 6 eurostat-3.3.4/eurostat/R/get_bibentry.R |only eurostat-3.3.4/eurostat/R/get_eurostat_geospatial.R | 12 eurostat-3.3.4/eurostat/R/get_eurostat_json.R | 7 eurostat-3.3.4/eurostat/R/harmonize_country_code.R | 2 eurostat-3.3.4/eurostat/README.md | 5 eurostat-3.3.4/eurostat/build/vignette.rds |binary eurostat-3.3.4/eurostat/data/ea_countries.rda |binary eurostat-3.3.4/eurostat/data/efta_countries.rda |binary eurostat-3.3.4/eurostat/data/eu_candidate_countries.rda |binary eurostat-3.3.4/eurostat/data/eu_countries.rda |binary eurostat-3.3.4/eurostat/data/tgs00026.rda |binary eurostat-3.3.4/eurostat/inst/doc/blogposts.html | 188 ----------- eurostat-3.3.4/eurostat/inst/doc/cheatsheet.html | 188 ----------- eurostat-3.3.4/eurostat/inst/doc/eurostat_tutorial.R | 100 ++--- eurostat-3.3.4/eurostat/inst/doc/eurostat_tutorial.Rmd | 8 eurostat-3.3.4/eurostat/inst/doc/eurostat_tutorial.pdf |only eurostat-3.3.4/eurostat/inst/doc/publications.Rmd | 2 eurostat-3.3.4/eurostat/inst/doc/publications.html | 188 ----------- eurostat-3.3.4/eurostat/man/cut_to_classes.Rd | 3 eurostat-3.3.4/eurostat/man/eu_countries.Rd | 1 eurostat-3.3.4/eurostat/man/get_bibentry.Rd |only eurostat-3.3.4/eurostat/man/get_eurostat_geospatial.Rd | 12 eurostat-3.3.4/eurostat/man/get_eurostat_json.Rd | 7 eurostat-3.3.4/eurostat/man/harmonize_country_code.Rd | 2 eurostat-3.3.4/eurostat/tests/testthat/test-all.R | 25 + eurostat-3.3.4/eurostat/vignettes/eurostat_tutorial.Rmd | 8 eurostat-3.3.4/eurostat/vignettes/eurostat_tutorial.html |only eurostat-3.3.4/eurostat/vignettes/eurostat_tutorial.md | 238 ++++++-------- eurostat-3.3.4/eurostat/vignettes/fig/map1ex-1.pdf |binary eurostat-3.3.4/eurostat/vignettes/fig/map1ex-1.png |binary eurostat-3.3.4/eurostat/vignettes/fig/maps2-1.pdf |binary eurostat-3.3.4/eurostat/vignettes/fig/maps2-1.png |binary eurostat-3.3.4/eurostat/vignettes/fig/maps3-1.png |binary eurostat-3.3.4/eurostat/vignettes/fig/maps4-1.png |binary eurostat-3.3.4/eurostat/vignettes/fig/plotGallery-1.pdf |binary eurostat-3.3.4/eurostat/vignettes/fig/plotGallery-1.png |binary eurostat-3.3.4/eurostat/vignettes/fig/trains_plot-1.pdf |binary eurostat-3.3.4/eurostat/vignettes/fig/trains_plot-1.png |binary eurostat-3.3.4/eurostat/vignettes/publications.Rmd | 2 48 files changed, 301 insertions(+), 833 deletions(-)
Title: Isotope Pattern, Profile and Centroid Calculation for Mass
Spectrometry
Description: Fast and very memory-efficient calculation of isotope patterns,
subsequent convolution to theoretical envelopes (profiles) plus valley
detection and centroidization or intensoid calculation. Batch processing,
resolution interpolation, wrapper, adduct calculations and molecular
formula parsing.
Loos, M., Gerber, C., Corona, F., Hollender, J., Singer, H. (2015)
<doi:10.1021/acs.analchem.5b00941>.
Author: Martin Loos, Christian Gerber
Maintainer: Martin Loos <mloos@envibee.ch>
Diff between enviPat versions 2.2 dated 2016-10-02 and 2.4 dated 2019-04-07
DESCRIPTION | 15 ++- MD5 | 29 +++---- NAMESPACE | 4 - NEWS | 8 ++ R/check_chemform.R | 13 ++- R/check_several.R | 8 +- R/envelope.R | 24 +++--- R/enviPat.R | 2 R/isopattern.R | 186 +++++++++++++++++++++++----------------------- R/vdetect.R | 50 +++++------- data/resolution_list.rda |binary man/adducts.Rd | 2 man/check_chemform.Rd | 2 man/resolution_list.Rd | 16 ++-- src/enviPat_init.c |only src/main.c | 187 ++++++++++++++++++++++++++++++++++++++--------- 16 files changed, 341 insertions(+), 205 deletions(-)
Title: JAR Dependencies for the 'DatabaseConnector' Package
Description: Provides external JAR dependencies for the 'DatabaseConnector' package.
Author: Martijn Schuemie [aut, cre],
Marc Suchard [aut],
Observational Health Data Science and Informatics [cph],
Microsoft Inc. [cph] (SQL Server JDBC driver),
PostgreSQL Global Development Group [cph] (PostgreSQL JDBC driver),
Oracle Inc. [cph] (Oracle JDBC driver),
Amazon Inc. [cph] (RedShift JDBC driver)
Maintainer: Martijn Schuemie <schuemie@ohdsi.org>
Diff between DatabaseConnectorJars versions 1.0.0 dated 2018-05-14 and 1.1.0 dated 2019-04-07
DatabaseConnectorJars-1.0.0/DatabaseConnectorJars/NEWS |only DatabaseConnectorJars-1.0.0/DatabaseConnectorJars/inst/java/RedshiftJDBC4-1.2.10.1009.jar |only DatabaseConnectorJars-1.0.0/DatabaseConnectorJars/inst/java/bqjdbc.jar |only DatabaseConnectorJars-1.0.0/DatabaseConnectorJars/inst/java/ojdbc6.jar |only DatabaseConnectorJars-1.0.0/DatabaseConnectorJars/inst/java/postgresql-9.3-1101.jdbc4.jar |only DatabaseConnectorJars-1.1.0/DatabaseConnectorJars/DESCRIPTION | 12 ++---- DatabaseConnectorJars-1.1.0/DatabaseConnectorJars/MD5 | 19 ++++------ DatabaseConnectorJars-1.1.0/DatabaseConnectorJars/NEWS.md |only DatabaseConnectorJars-1.1.0/DatabaseConnectorJars/R/DatabaseConnectorJars.R | 2 - DatabaseConnectorJars-1.1.0/DatabaseConnectorJars/README.md | 3 + DatabaseConnectorJars-1.1.0/DatabaseConnectorJars/inst/COPYRIGHTS | 11 ----- DatabaseConnectorJars-1.1.0/DatabaseConnectorJars/inst/java/RedshiftJDBC4-no-awssdk-1.2.20.1043.jar |only DatabaseConnectorJars-1.1.0/DatabaseConnectorJars/inst/java/ojdbc8.jar |only DatabaseConnectorJars-1.1.0/DatabaseConnectorJars/inst/java/postgresql-42.2.5.jre6.jar |only DatabaseConnectorJars-1.1.0/DatabaseConnectorJars/java/README.md | 2 - 15 files changed, 18 insertions(+), 31 deletions(-)
More information about DatabaseConnectorJars at CRAN
Permanent link
Title: Depth-Based Classification and Calculation of Data Depth
Description: Contains procedures for depth-based supervised learning, which are entirely non-parametric, in particular the DDalpha-procedure (Lange, Mosler and Mozharovskyi, 2014 <doi:10.1007/s00362-012-0488-4>). The training data sample is transformed by a statistical depth function to a compact low-dimensional space, where the final classification is done. It also offers an extension to functional data and routines for calculating certain notions of statistical depth functions. 50 multivariate and 5 functional classification problems are included.
Author: Oleksii Pokotylo [aut, cre],
Pavlo Mozharovskyi [aut],
Rainer Dyckerhoff [aut],
Stanislav Nagy [aut]
Maintainer: Oleksii Pokotylo <alexey.pokotylo@gmail.com>
Diff between ddalpha versions 1.3.8 dated 2019-01-06 and 1.3.9 dated 2019-04-07
DESCRIPTION | 8 - MD5 | 60 +++++------ NAMESPACE | 4 R/dataf.r |only R/ddalpha-internal.r | 13 ++ R/ddalpha.train.r | 26 ++++- R/depth.simplicialVolume.r | 187 +++++++++++++++++++----------------- R/plot.functional.r | 130 ++++++++++++------------- man/dataf.Rd |only man/ddalpha-package.Rd | 4 man/depth.L2.Rd | 2 man/depth.simplicialVolume.Rd | 9 + man/depth.space.simplicialVolume.Rd | 9 + man/derivatives.est.Rd | 7 - src/Common.cpp | 38 ++++--- src/Common.h | 2 src/DKnn.cpp | 8 - src/DKnn.h | 4 src/HD.cpp | 6 - src/Knn.cpp | 93 ++++++++--------- src/Knn.h | 14 +- src/Mahalanobis.cpp | 8 - src/OjaDepth.cpp | 50 +++++---- src/OjaDepth.h | 5 src/Polynomial.cpp | 34 +++--- src/Polynomial.h | 2 src/PotentialDepth.cpp | 4 src/SimplicialDepth.cpp | 4 src/ddalpha.cpp | 23 ++-- src/init.c | 4 src/stdafx.cpp | 2 src/stdafx.h | 23 ---- 32 files changed, 422 insertions(+), 361 deletions(-)
Title: Convert Statistical Analysis Objects into Tidy Tibbles
Description: Summarizes key information about statistical
objects in tidy tibbles. This makes it easy to report results, create
plots and consistently work with large numbers of models at once.
Broom provides three verbs that each provide different types of
information about a model. tidy() summarizes information about model
components such as coefficients of a regression. glance() reports
information about an entire model, such as goodness of fit measures
like AIC and BIC. augment() adds information about individual
observations to a dataset, such as fitted values or influence
measures.
Author: David Robinson [aut],
Alex Hayes [aut, cre] (<https://orcid.org/0000-0002-4985-5160>),
Matthieu Gomez [ctb],
Boris Demeshev [ctb],
Dieter Menne [ctb],
Benjamin Nutter [ctb],
Luke Johnston [ctb],
Ben Bolker [ctb],
Francois Briatte [ctb],
Jeffrey Arnold [ctb],
Jonah Gabry [ctb],
Luciano Selzer [ctb],
Gavin Simpson [ctb],
Jens Preussner [ctb],
Jay Hesselberth [ctb],
Hadley Wickham [ctb],
Matthew Lincoln [ctb],
Alessandro Gasparini [ctb],
Lukasz Komsta [ctb],
Frederick Novometsky [ctb],
Wilson Freitas [ctb],
Michelle Evans [ctb],
Jason Cory Brunson [ctb],
Simon Jackson [ctb],
Ben Whalley [ctb],
Michael Kuehn [ctb],
Jorge Cimentada [ctb],
Erle Holgersen [ctb],
Karl Dunkle Werner [ctb]
Maintainer: Alex Hayes <alexpghayes@gmail.com>
Diff between broom versions 0.5.1 dated 2018-12-05 and 0.5.2 dated 2019-04-07
DESCRIPTION | 6 - MD5 | 32 +++--- NEWS.md | 8 + R/ergm-tidiers.R | 201 +++++++++++++++++--------------------- R/utilities.R | 14 ++ build/vignette.rds |binary inst/doc/adding-tidiers.html | 35 +++++- inst/doc/available-methods.html | 8 - inst/doc/bootstrapping.html | 82 +++++++++------ inst/doc/broom.html | 49 ++++++--- inst/doc/broom_and_dplyr.html | 35 +++++- inst/doc/glossary.html | 9 + inst/doc/kmeans.html | 33 +++++- man/glance.ergm.Rd | 10 - man/tidy.ergm.Rd | 56 ++++------ tests/testthat/test-ergm.R | 15 +- tests/testthat/test-stats-htest.R | 4 17 files changed, 360 insertions(+), 237 deletions(-)
Title: Sparse Additive Modelling
Description: Computationally efficient tools for high dimensional predictive
modeling (regression and classification). SAM is short for sparse
additive modeling, and adopts the computationally efficient basis
spline technique. We solve the optimization problems by various
computational algorithms including the block coordinate descent
algorithm, fast iterative soft-thresholding algorithm, and newton method.
The computation is further accelerated by warm-start and active-set tricks.
Author: Haoming Jiang, Yukun Ma, Han Liu, Kathryn Roeder, Xingguo Li, and Tuo Zhao
Maintainer: Haoming Jiang <jianghm.ustc@gmail.com>
Diff between SAM versions 1.1.1 dated 2019-03-11 and 1.1.2 dated 2019-04-07
DESCRIPTION | 9 ++++----- MD5 | 4 ++-- configure.ac | 2 +- 3 files changed, 7 insertions(+), 8 deletions(-)
More information about postinfectious at CRAN
Permanent link
Title: Latent Markov Models with and without Covariates
Description: Fit certain versions of the Latent Markov model for longitudinal categorical data.
Author: Francesco Bartolucci, Silvia Pandolfi - University of Perugia (IT)
Maintainer: Francesco Bartolucci <bart@stat.unipg.it>
Diff between LMest versions 2.4.4 dated 2019-03-18 and 2.4.5 dated 2019-04-07
LMest-2.4.4/LMest/R/est_mc_cov_latent.R |only LMest-2.4.4/LMest/man/est_mc_cov_latent.Rd |only LMest-2.4.5/LMest/DESCRIPTION | 11 +++++------ LMest-2.4.5/LMest/MD5 | 20 ++++++++++---------- LMest-2.4.5/LMest/NAMESPACE | 6 ++---- LMest-2.4.5/LMest/R/est_lm_basic_cont.R | 14 +++++++++----- LMest-2.4.5/LMest/R/est_lm_cov_latent_cont.R | 21 +++++++++++++-------- LMest-2.4.5/LMest/R/est_mc_cov.R |only LMest-2.4.5/LMest/R/prob_post_cov_cont.R | 16 ++++++++-------- LMest-2.4.5/LMest/man/LMest-package.Rd | 4 ++-- LMest-2.4.5/LMest/man/est_lm_basic_cont.Rd | 3 ++- LMest-2.4.5/LMest/man/est_lm_cov_latent_cont.Rd | 5 +++-- LMest-2.4.5/LMest/man/est_mc_cov.Rd |only 13 files changed, 54 insertions(+), 46 deletions(-)
Title: Tools to Deal with Raster Maps
Description: A collection of tools to deal with raster maps.
Author: Clement Calenge, contributions from Mathieu Basille
Maintainer: Clement Calenge <clement.calenge@oncfs.gouv.fr>
Diff between adehabitatMA versions 0.3.12 dated 2017-11-28 and 0.3.13 dated 2019-04-07
DESCRIPTION | 8 +- MD5 | 14 ++-- build/vignette.rds |binary inst/doc/adehabitatMA.R | 145 ++++++++++++++++++++++----------------------- inst/doc/adehabitatMA.Rnw | 3 inst/doc/adehabitatMA.pdf |binary man/buffer.Rd | 3 vignettes/adehabitatMA.Rnw | 3 8 files changed, 90 insertions(+), 86 deletions(-)
Title: Analysis of Animal Movements
Description: A collection of tools for the analysis of animal movements.
Author: Clement Calenge, contributions from Stephane Dray and Manuela Royer
Maintainer: Clement Calenge <clement.calenge@oncfs.gouv.fr>
Diff between adehabitatLT versions 0.3.23 dated 2018-01-28 and 0.3.24 dated 2019-04-07
DESCRIPTION | 8 - MD5 | 26 +-- R/burst.r | 4 build/vignette.rds |binary inst/doc/adehabitatLT.R | 314 +++++++++++++++++++++++---------------------- inst/doc/adehabitatLT.Rnw | 6 inst/doc/adehabitatLT.pdf |binary man/lavielle.Rd | 2 man/simm.crw.Rd | 1 man/simm.levy.Rd | 1 man/simm.mba.Rd | 1 man/simm.mou.Rd | 2 man/testNM.Rd | 2 vignettes/adehabitatLT.Rnw | 6 14 files changed, 200 insertions(+), 173 deletions(-)
Title: Analysis of Habitat Selection by Animals
Description: A collection of tools for the analysis of habitat selection.
Author: Clement Calenge, contributions from Mathieu Basille
Maintainer: Clement Calenge <clement.calenge@oncfs.gouv.fr>
Diff between adehabitatHS versions 0.3.13 dated 2017-11-28 and 0.3.14 dated 2019-04-07
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- inst/doc/adehabitatHS.pdf |binary man/engen2008II.Rd | 1 + 4 files changed, 8 insertions(+), 7 deletions(-)
Title: Home Range Estimation
Description: A collection of tools for the estimation of animals home range.
Author: Clement Calenge, contributions from Scott Fortmann-Roe
Maintainer: Clement Calenge <clement.calenge@oncfs.gouv.fr>
Diff between adehabitatHR versions 0.4.15 dated 2017-11-28 and 0.4.16 dated 2019-04-07
DESCRIPTION | 8 - MD5 | 14 +- build/vignette.rds |binary inst/doc/adehabitatHR.R | 261 ++++++++++++++++++++++----------------------- inst/doc/adehabitatHR.Rnw | 4 inst/doc/adehabitatHR.pdf |binary man/kernelbb.Rd | 1 vignettes/adehabitatHR.Rnw | 4 8 files changed, 150 insertions(+), 142 deletions(-)
Title: Linear and Nonlinear Mixed Effects Models
Description: Fit and compare Gaussian linear and nonlinear mixed-effects models.
Author: José Pinheiro [aut] (S version),
Douglas Bates [aut] (up to 2007),
Saikat DebRoy [ctb] (up to 2002),
Deepayan Sarkar [ctb] (up to 2005),
EISPACK authors [ctb] (src/rs.f),
Siem Heisterkamp [ctb] (Author fixed sigma),
Bert Van Willigen [ctb] (Programmer fixed sigma),
R-core [aut, cre]
Maintainer: R-core <R-core@R-project.org>
Diff between nlme versions 3.1-137 dated 2018-04-07 and 3.1-138 dated 2019-04-07
ChangeLog | 38 +++ DESCRIPTION | 9 MD5 | 113 +++++------ NAMESPACE | 5 R/gls.R | 6 R/gnls.R | 60 ++--- R/groupedData.R | 134 ++++++------- R/lmList.R | 187 +++++++----------- R/lme.R | 341 +++++++++++++++------------------- R/newMethods.R | 18 - R/nlme.R | 1 R/reStruct.R | 7 R/zzMethods.R | 7 inst/po/de/LC_MESSAGES/R-nlme.mo |binary inst/po/de/LC_MESSAGES/nlme.mo |binary inst/po/en@quot/LC_MESSAGES/R-nlme.mo |binary inst/po/en@quot/LC_MESSAGES/nlme.mo |binary inst/po/fr/LC_MESSAGES/R-nlme.mo |binary inst/po/fr/LC_MESSAGES/nlme.mo |binary inst/po/ko/LC_MESSAGES/R-nlme.mo |binary inst/po/ko/LC_MESSAGES/nlme.mo |binary inst/po/pl/LC_MESSAGES/R-nlme.mo |binary inst/po/pl/LC_MESSAGES/nlme.mo |binary inst/scripts/ch06.R | 23 +- man/Variogram.default.Rd | 2 man/Variogram.gls.Rd | 5 man/anova.lme.Rd | 4 man/compareFits.Rd | 8 man/groupedData.Rd | 13 - man/lme.Rd | 6 man/lmeControl.Rd | 10 man/pairs.compareFits.Rd | 5 man/pairs.lmList.Rd | 18 - man/pairs.lme.Rd | 6 man/plot.compareFits.Rd | 10 man/plot.intervals.lmList.Rd | 22 +- man/plot.ranef.lmList.Rd | 12 - man/plot.ranef.lme.Rd | 83 ++++---- man/summary.lme.Rd | 2 po/R-de.po | 41 ++-- po/R-fr.po | 9 po/R-ko.po | 8 po/R-nlme.pot | 10 po/R-pl.po | 11 - po/de.po | 40 ++- po/fr.po | 25 +- po/ko.po | 22 +- po/nlme.pot | 24 +- po/pl.po | 28 +- src/init.c | 85 ++++---- src/nlmefit.c | 59 +++-- tests/data.frame.R | 1 tests/gnls-ch8.R |only tests/lmList.R | 18 + tests/lme.R | 8 tests/lme.Rout.save | 18 + tests/nlme-stall.R | 2 tests/sigma-fixed-etc.R | 2 58 files changed, 834 insertions(+), 732 deletions(-)
Title: Computing Expectations and Marginal Likelihoods for Permutations
Description: A set of functions for computing expected permutation matrices given a matrix of likelihoods for each individual assignment. It has been written to accompany the forthcoming paper 'Computing expectations and marginal likelihoods for permutations'. Publication details will be updated as soon as they are finalized.
Author: Ben Powell
Maintainer: Ben Powell <ben.powell@york.ac.uk>
Diff between expperm versions 0.1.0 dated 2019-02-08 and 1.0 dated 2019-04-07
expperm-0.1.0/expperm/R/contractor.R |only expperm-0.1.0/expperm/R/coollex.R |only expperm-0.1.0/expperm/R/gray.R |only expperm-0.1.0/expperm/R/heap.R |only expperm-0.1.0/expperm/man/contractor.Rd |only expperm-0.1.0/expperm/man/coollex.Rd |only expperm-0.1.0/expperm/man/gray.Rd |only expperm-0.1.0/expperm/man/heap.Rd |only expperm-1.0/expperm/DESCRIPTION | 17 ++++++---- expperm-1.0/expperm/MD5 | 47 +++++++++++++++++------------ expperm-1.0/expperm/NAMESPACE | 2 + expperm-1.0/expperm/R/BG.R | 27 ++++++++++------ expperm-1.0/expperm/R/RcppExports.R |only expperm-1.0/expperm/R/brute.R | 26 ++++++++++++---- expperm-1.0/expperm/R/df1.R | 12 ++++++- expperm-1.0/expperm/R/ryser.R | 40 ++++++++++++++---------- expperm-1.0/expperm/R/sink.R | 2 - expperm-1.0/expperm/build |only expperm-1.0/expperm/data/df1.rda |binary expperm-1.0/expperm/data/df2.rda |binary expperm-1.0/expperm/man/BG_cpp.Rd |only expperm-1.0/expperm/man/brute_cpp.Rd |only expperm-1.0/expperm/man/df1.Rd | 13 +++++++- expperm-1.0/expperm/man/expperm-package.Rd |only expperm-1.0/expperm/man/ryser_cpp.Rd |only expperm-1.0/expperm/man/sink.Rd | 4 -- expperm-1.0/expperm/man/sink_cpp.Rd |only expperm-1.0/expperm/src |only expperm-1.0/expperm/tests |only 29 files changed, 125 insertions(+), 65 deletions(-)
Title: A Pipeline Toolkit for Reproducible Computation at Scale
Description: A general-purpose computational engine for data analysis,
drake rebuilds intermediate data objects when their dependencies change,
and it skips work when the results are already up to date.
Not every execution starts from scratch,
there is native support for parallel and distributed computing,
and completed projects have tangible evidence
that they are reproducible.
Extensive documentation, from beginner-friendly tutorials
to practical examples and more, is available at the reference website
<https://ropensci.github.io/drake/> and the online manual
<https://ropenscilabs.github.io/drake-manual/>.
Author: William Michael Landau [aut, cre]
(<https://orcid.org/0000-0003-1878-3253>),
Alex Axthelm [ctb],
Jasper Clarkberg [ctb],
Kirill Müller [ctb],
Ben Bond-Lamberty [ctb] (<https://orcid.org/0000-0001-9525-4633>),
Tristan Mahr [ctb] (<https://orcid.org/0000-0002-8890-5116>),
Miles McBain [ctb] (<https://orcid.org/0000-0003-2865-2548>),
Ben Marwick [rev],
Peter Slaughter [rev],
Eli Lilly and Company [cph]
Maintainer: William Michael Landau <will.landau@gmail.com>
Diff between drake versions 7.0.0 dated 2019-03-10 and 7.1.0 dated 2019-04-07
drake-7.0.0/drake/inst/examples |only drake-7.0.0/drake/inst/hpc_template_files |only drake-7.1.0/drake/DESCRIPTION | 52 +- drake-7.1.0/drake/MD5 | 283 +++++++------- drake-7.1.0/drake/NAMESPACE | 3 drake-7.1.0/drake/NEWS.md | 35 + drake-7.1.0/drake/R/api-cache.R | 20 drake-7.1.0/drake/R/api-callr.R | 6 drake-7.1.0/drake/R/api-clean.R | 42 +- drake-7.1.0/drake/R/api-debug.R | 7 drake-7.1.0/drake/R/api-dsl.R | 4 drake-7.1.0/drake/R/api-examples.R | 4 drake-7.1.0/drake/R/api-make.R | 3 drake-7.1.0/drake/R/api-outdated.R | 72 +-- drake-7.1.0/drake/R/api-package.R | 2 drake-7.1.0/drake/R/api-plan.R | 200 ++++----- drake-7.1.0/drake/R/api-predict.R | 3 drake-7.1.0/drake/R/api-read.R | 22 - drake-7.1.0/drake/R/api-times.R | 15 drake-7.1.0/drake/R/api-usedrake.R |only drake-7.1.0/drake/R/backend-clustermq.R | 53 ++ drake-7.1.0/drake/R/backend-future.R | 59 ++ drake-7.1.0/drake/R/backend-loop.R | 2 drake-7.1.0/drake/R/exec-backend.R | 8 drake-7.1.0/drake/R/exec-build.R | 25 + drake-7.1.0/drake/R/exec-imports.R | 16 drake-7.1.0/drake/R/exec-memory.R | 17 drake-7.1.0/drake/R/exec-meta.R | 102 ++++- drake-7.1.0/drake/R/exec-queue.R | 2 drake-7.1.0/drake/R/exec-run.R | 6 drake-7.1.0/drake/R/exec-session.R | 9 drake-7.1.0/drake/R/exec-standardize.R | 2 drake-7.1.0/drake/R/exec-store.R | 6 drake-7.1.0/drake/R/preprocess-config.R | 65 +-- drake-7.1.0/drake/R/preprocess-graph.R | 30 + drake-7.1.0/drake/R/preprocess-layout.R | 16 drake-7.1.0/drake/R/preprocess-sanitize.R | 33 - drake-7.1.0/drake/R/rstudio-loadd.R |only drake-7.1.0/drake/R/utils-checksums.R | 2 drake-7.1.0/drake/R/utils-defunct.R | 20 drake-7.1.0/drake/R/utils-deprecate.R | 2 drake-7.1.0/drake/R/utils-graphinfo.R | 12 drake-7.1.0/drake/R/utils-handlers.R | 11 drake-7.1.0/drake/R/utils-hpc.R | 12 drake-7.1.0/drake/R/utils-utils.R | 60 +- drake-7.1.0/drake/R/utils-zzz.R | 17 drake-7.1.0/drake/R/vis-color.R | 49 -- drake-7.1.0/drake/R/vis-console.R | 226 +---------- drake-7.1.0/drake/R/vis-ggraph.R | 36 + drake-7.1.0/drake/R/vis-graphinfo.R | 1 drake-7.1.0/drake/R/vis-sankey.R | 2 drake-7.1.0/drake/README.md | 17 drake-7.1.0/drake/build/vignette.rds |binary drake-7.1.0/drake/inst/WORDLIST | 6 drake-7.1.0/drake/inst/doc/drake.html | 203 ---------- drake-7.1.0/drake/inst/rmarkdown/examples |only drake-7.1.0/drake/inst/rstudio |only drake-7.1.0/drake/inst/templates |only drake-7.1.0/drake/man/build_drake_graph.Rd | 28 - drake-7.1.0/drake/man/build_times.Rd | 16 drake-7.1.0/drake/man/built.Rd | 12 drake-7.1.0/drake/man/cached.Rd | 12 drake-7.1.0/drake/man/check_plan.Rd | 12 drake-7.1.0/drake/man/clean.Rd | 22 - drake-7.1.0/drake/man/cmq_build.Rd | 2 drake-7.1.0/drake/man/configure_cache.Rd | 12 drake-7.1.0/drake/man/default_Makefile_args.Rd | 12 drake-7.1.0/drake/man/diagnose.Rd | 12 drake-7.1.0/drake/man/drake_cache_log.Rd | 12 drake-7.1.0/drake/man/drake_cache_log_file.Rd | 12 drake-7.1.0/drake/man/drake_config.Rd | 49 -- drake-7.1.0/drake/man/drake_gc.Rd | 12 drake-7.1.0/drake/man/drake_get_session_info.Rd | 12 drake-7.1.0/drake/man/drake_ggraph.Rd | 6 drake-7.1.0/drake/man/drake_plan.Rd | 16 drake-7.1.0/drake/man/drake_session.Rd | 12 drake-7.1.0/drake/man/eager_load_target.Rd | 12 drake-7.1.0/drake/man/failed.Rd | 12 drake-7.1.0/drake/man/figures/logo.png |only drake-7.1.0/drake/man/file_in.Rd | 39 + drake-7.1.0/drake/man/file_out.Rd | 43 +- drake-7.1.0/drake/man/from_plan.Rd | 72 --- drake-7.1.0/drake/man/future_build.Rd | 2 drake-7.1.0/drake/man/get_cache.Rd | 28 - drake-7.1.0/drake/man/imported.Rd | 12 drake-7.1.0/drake/man/in_progress.Rd | 12 drake-7.1.0/drake/man/knitr_in.Rd | 17 drake-7.1.0/drake/man/long_hash.Rd | 12 drake-7.1.0/drake/man/make.Rd | 49 -- drake-7.1.0/drake/man/new_cache.Rd | 28 - drake-7.1.0/drake/man/outdated.Rd | 6 drake-7.1.0/drake/man/progress.Rd | 12 drake-7.1.0/drake/man/read_drake_config.Rd | 12 drake-7.1.0/drake/man/read_drake_graph.Rd | 12 drake-7.1.0/drake/man/read_drake_plan.Rd | 12 drake-7.1.0/drake/man/read_drake_seed.Rd | 12 drake-7.1.0/drake/man/readd.Rd | 12 drake-7.1.0/drake/man/recover_cache.Rd | 28 - drake-7.1.0/drake/man/render_drake_ggraph.Rd | 7 drake-7.1.0/drake/man/rescue_cache.Rd | 12 drake-7.1.0/drake/man/rs_addin_loadd.Rd |only drake-7.1.0/drake/man/running.Rd | 12 drake-7.1.0/drake/man/short_hash.Rd | 12 drake-7.1.0/drake/man/this_cache.Rd | 28 - drake-7.1.0/drake/man/use_drake.Rd |only drake-7.1.0/drake/tests/scenarios/tests-all.R | 1 drake-7.1.0/drake/tests/scenarios/tests-separate.Rout |only drake-7.1.0/drake/tests/testthat/test-always-skipped.R | 73 +++ drake-7.1.0/drake/tests/testthat/test-cache.R | 39 + drake-7.1.0/drake/tests/testthat/test-clustermq.R | 18 drake-7.1.0/drake/tests/testthat/test-console.R | 183 ++------- drake-7.1.0/drake/tests/testthat/test-custom-caches.R | 10 drake-7.1.0/drake/tests/testthat/test-dependencies.R | 2 drake-7.1.0/drake/tests/testthat/test-deprecate.R | 12 drake-7.1.0/drake/tests/testthat/test-edge-cases.R | 53 +- drake-7.1.0/drake/tests/testthat/test-examples.R | 14 drake-7.1.0/drake/tests/testthat/test-full-build.R | 2 drake-7.1.0/drake/tests/testthat/test-future.R | 13 drake-7.1.0/drake/tests/testthat/test-graph.R | 8 drake-7.1.0/drake/tests/testthat/test-hash.R | 77 ++- drake-7.1.0/drake/tests/testthat/test-import-file.R | 41 ++ drake-7.1.0/drake/tests/testthat/test-intermediate-file.R | 91 ++++ drake-7.1.0/drake/tests/testthat/test-knitr.R | 4 drake-7.1.0/drake/tests/testthat/test-lazy-load.R | 6 drake-7.1.0/drake/tests/testthat/test-map-reduce.R | 2 drake-7.1.0/drake/tests/testthat/test-memory-cache.R | 32 - drake-7.1.0/drake/tests/testthat/test-memory.R | 2 drake-7.1.0/drake/tests/testthat/test-namespaced.R | 4 drake-7.1.0/drake/tests/testthat/test-other-features.R | 18 drake-7.1.0/drake/tests/testthat/test-plans.R | 43 -- drake-7.1.0/drake/tests/testthat/test-priority-queue.R | 2 drake-7.1.0/drake/tests/testthat/test-random.R | 22 - drake-7.1.0/drake/tests/testthat/test-retry.R | 12 drake-7.1.0/drake/tests/testthat/test-rstudio-loadd.R |only drake-7.1.0/drake/tests/testthat/test-tidy-eval.R | 6 drake-7.1.0/drake/tests/testthat/test-time.R | 12 drake-7.1.0/drake/tests/testthat/test-triggers.R | 78 +-- drake-7.1.0/drake/tests/testthat/test-visuals.R | 5 drake-7.1.0/drake/tests/testthat/test-zzz-callr.R | 12 139 files changed, 1699 insertions(+), 1884 deletions(-)
Title: Object Oriented Implementation of Probability Models
Description: Implements S4 classes for probability models based on packages 'distr' and
'distrEx'.
Author: Matthias Kohl [aut, cph],
Peter Ruckdeschel [cre, cph],
R Core Team [ctb, cph] (for source file 'format.perc')
Maintainer: Peter Ruckdeschel <peter.ruckdeschel@uni-oldenburg.de>
Diff between distrMod versions 2.8.0 dated 2019-04-03 and 2.8.1 dated 2019-04-07
DESCRIPTION | 16 +-- MD5 | 16 +-- NAMESPACE | 1 R/L2ParamFamily.R | 32 ++++++- inst/NEWS | 15 ++- inst/doc/distrMod.pdf |binary man/0distrMod-package.Rd | 6 - man/checkL2deriv.Rd | 12 ++ tests/Examples/distrMod-Ex.Rout.save | 152 +++++++++++++++++------------------ 9 files changed, 145 insertions(+), 105 deletions(-)
Title: Knowledge Space Theory
Description: Knowledge space theory by Doignon and Falmagne (1999)
<doi:10.1007/978-3-642-58625-5> is a set- and order-theoretical
framework, which proposes mathematical formalisms to operationalize
knowledge structures in a particular domain. The 'kst' package provides
basic functionalities to generate, handle, and manipulate knowledge
structures and knowledge spaces.
Author: Christina Stahl [aut],
David Meyer [aut],
Cord Hockemeyer [aut, cre]
Maintainer: Cord Hockemeyer <cord.hockemeyer@uni-graz.at>
Diff between kst versions 0.5-1 dated 2018-11-29 and 0.5-2 dated 2019-04-07
Changelog | 5 +++ DESCRIPTION | 8 ++--- MD5 | 18 +++++------ R/as.relation.kbase.R | 71 +++++++++++++++++++++++--------------------- R/as.relation.kfamset.R | 71 +++++++++++++++++++++++--------------------- R/as.relation.kstructure.R | 72 +++++++++++++++++++++++---------------------- R/kdomain.R | 5 +-- build/vignette.rds |binary inst/doc/kst.pdf |binary man/as.relation.Rd | 8 ++--- 10 files changed, 136 insertions(+), 122 deletions(-)
Title: Computes Numeric Fourier Integrals
Description: Computes Fourier integrals of functions of one and two variables using the Fast Fourier transform. The Fourier transforms must be evaluated on a regular grid for fast evaluation.
Author: Guillermo Basulto-Elias
Maintainer: Guillermo Basulto-Elias <guillermobasulto@gmail.com>
Diff between fourierin versions 0.2.3 dated 2019-03-24 and 0.2.4 dated 2019-04-07
DESCRIPTION | 10 - MD5 | 18 +- NAMESPACE | 14 - NEWS.md | 54 +++--- R/RcppExports.R | 78 ++++---- inst/doc/fourierin_details.html | 8 man/fourierin.Rd | 356 ++++++++++++++++++++-------------------- man/fourierin_1d.Rd | 236 +++++++++++++------------- man/fourierin_2d.Rd | 238 +++++++++++++------------- src/fourierin_2d.cpp | 6 10 files changed, 512 insertions(+), 506 deletions(-)
Title: Functions to solve Quadratic Programming Problems.
Description: This package contains routines and documentation for
solving quadratic programming problems.
Author: S original by Berwin A. Turlach <Berwin.Turlach@gmail.com> R
port by Andreas Weingessel <Andreas.Weingessel@ci.tuwien.ac.at>
Maintainer: Berwin A. Turlach <Berwin.Turlach@gmail.com>
Diff between quadprog versions 1.5-5 dated 2013-04-17 and 1.5-6 dated 2019-04-07
DESCRIPTION | 12 ++++++------ MD5 | 6 +++--- src/Makevars | 8 ++++---- src/Makevars.win | 4 ++-- 4 files changed, 15 insertions(+), 15 deletions(-)
Title: Statistical Exploration of Landscapes of Phylogenetic Trees
Description: Tools for the exploration of distributions of phylogenetic trees.
This package includes a 'shiny' interface which can be started from R using
treespaceServer().
For further details see Jombart et al. (2017) <DOI:10.1111/1755-0998.12676>.
Author: Thibaut Jombart [aut],
Michelle Kendall [aut, cre],
Jacob Almagro-Garcia [aut],
Caroline Colijn [aut]
Maintainer: Michelle Kendall <michelle.kendall@bdi.ox.ac.uk>
Diff between treespace versions 1.1.3 dated 2018-05-14 and 1.1.3.1 dated 2019-04-07
DESCRIPTION | 6 MD5 | 46 build/vignette.rds |binary data/DengueBEASTMCC.RData |binary data/DengueSeqs.RData |binary data/DengueTrees.RData |binary data/fluTrees.RData |binary data/woodmiceTrees.RData |binary inst/doc/DengueVignette.R | 1 inst/doc/DengueVignette.Rmd | 1 inst/doc/DengueVignette.html | 4060 +++++++++++++++++++++++++++++--- inst/doc/TransmissionTreesVignette.R | 1 inst/doc/TransmissionTreesVignette.Rmd | 3 inst/doc/TransmissionTreesVignette.html | 527 ++-- inst/doc/introduction.R | 1 inst/doc/introduction.Rmd | 1 inst/doc/introduction.html | 3910 +++++++++++++++++++++++++++++- inst/doc/tipCategories.R | 1 inst/doc/tipCategories.Rmd | 3 inst/doc/tipCategories.html | 611 +++- vignettes/DengueVignette.Rmd | 1 vignettes/TransmissionTreesVignette.Rmd | 3 vignettes/introduction.Rmd | 1 vignettes/tipCategories.Rmd | 3 24 files changed, 8371 insertions(+), 809 deletions(-)
Title: Automate Package and Project Setup
Description: Automate package and project setup tasks that are otherwise
performed manually. This includes setting up unit testing, test
coverage, continuous integration, Git, 'GitHub', licenses, 'Rcpp', 'RStudio'
projects, and more.
Author: Hadley Wickham [aut] (<https://orcid.org/0000-0003-4757-117X>),
Jennifer Bryan [aut, cre] (<https://orcid.org/0000-0002-6983-2759>),
RStudio [cph, fnd]
Maintainer: Jennifer Bryan <jenny@rstudio.com>
Diff between usethis versions 1.4.0 dated 2018-08-14 and 1.5.0 dated 2019-04-07
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Title: R Interface to 'Bloomberg'
Description: An R Interface to 'Bloomberg' is provided via the 'Blp API'.
Author: Whit Armstrong, Dirk Eddelbuettel and John Laing
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between Rblpapi versions 0.3.9 dated 2019-02-21 and 0.3.10 dated 2019-04-07
Rblpapi-0.3.10/Rblpapi/ChangeLog | 64 ++++++++++++ Rblpapi-0.3.10/Rblpapi/DESCRIPTION | 16 +-- Rblpapi-0.3.10/Rblpapi/MD5 | 50 +++++----- Rblpapi-0.3.10/Rblpapi/R/RcppExports.R | 34 +++--- Rblpapi-0.3.10/Rblpapi/R/bdh.R | 13 ++ Rblpapi-0.3.10/Rblpapi/R/blpAuthenticate.R | 32 +++--- Rblpapi-0.3.10/Rblpapi/R/blpConnect.R | 11 +- Rblpapi-0.3.10/Rblpapi/README.md | 4 Rblpapi-0.3.10/Rblpapi/build/vignette.rds |binary Rblpapi-0.3.10/Rblpapi/configure | 2 Rblpapi-0.3.10/Rblpapi/inst/NEWS.Rd | 21 ++++ Rblpapi-0.3.10/Rblpapi/inst/auto |only Rblpapi-0.3.10/Rblpapi/inst/doc/rblpapi-intro.html | 7 + Rblpapi-0.3.10/Rblpapi/inst/unitTests/runit.bdp.R | 5 + Rblpapi-0.3.10/Rblpapi/man/bdh.Rd | 8 + Rblpapi-0.3.10/Rblpapi/man/blpAuthenticate.Rd | 18 ++- Rblpapi-0.3.10/Rblpapi/man/blpConnect.Rd | 12 ++ Rblpapi-0.3.10/Rblpapi/src/Makevars.in | 2 Rblpapi-0.3.10/Rblpapi/src/RcppExports.cpp | 62 ++++++++---- Rblpapi-0.3.10/Rblpapi/src/authenticate.cpp | 104 +++++++++++++++++++-- Rblpapi-0.3.10/Rblpapi/src/bdh.cpp | 13 ++ Rblpapi-0.3.10/Rblpapi/src/bds.cpp | 12 +- Rblpapi-0.3.10/Rblpapi/src/blpConnect.cpp | 18 +++ Rblpapi-0.3.10/Rblpapi/src/blpapi_utils.cpp | 19 +-- Rblpapi-0.3.10/Rblpapi/src/blpapi_utils.h | 1 Rblpapi-0.3.10/Rblpapi/src/getFieldInfo.cpp | 8 - Rblpapi-0.3.9/Rblpapi/src/init.c |only 27 files changed, 403 insertions(+), 133 deletions(-)
Title: Kernel Semi-Parametric Models
Description: To fit the kernel semi-parametric model and its extensions. It allows multiple kernels and unlimited interactions in the same model. Coefficients are estimated by maximizing a penalized log-likelihood; penalization terms and hyperparameters are estimated by minimizing leave-one-out error. It includes predictions with confidence/prediction intervals, statistical tests for the significance of each kernel, a procedure for variable selection and graphical tools for diagnostics and interpretation of covariate effects. Currently it is implemented for continuous dependent variables.
Author: Catherine Schramm [aut, cre],
Aurelie Labbe [ctb],
Celia M. T. Greenwood [ctb]
Maintainer: Catherine Schramm <cath.schramm@gmail.com>
Diff between KSPM versions 0.1.1 dated 2019-02-01 and 0.1.2 dated 2019-04-07
KSPM-0.1.1/KSPM/R/devtools_history.R |only KSPM-0.1.2/KSPM/DESCRIPTION | 8 ++++---- KSPM-0.1.2/KSPM/MD5 | 3 +-- 3 files changed, 5 insertions(+), 6 deletions(-)
Title: Extension of `data.frame`
Description: Fast aggregation of large data (e.g. 100GB in RAM), fast ordered joins, fast add/modify/delete of columns by group using no copies at all, list columns, friendly and fast character-separated-value read/write. Offers a natural and flexible syntax, for faster development.
Author: Matt Dowle [aut, cre],
Arun Srinivasan [aut],
Jan Gorecki [ctb],
Michael Chirico [ctb],
Pasha Stetsenko [ctb],
Tom Short [ctb],
Steve Lianoglou [ctb],
Eduard Antonyan [ctb],
Markus Bonsch [ctb],
Hugh Parsonage [ctb],
Scott Ritchie [ctb],
Kun Ren [ctb],
Xianying Tan [ctb],
Rick Saporta [ctb],
Otto Seiskari [ctb],
Xianghui Dong [ctb],
Michel Lang [ctb],
Watal Iwasaki [ctb],
Seth Wenchel [ctb],
Karl Broman [ctb],
Tobias Schmidt [ctb],
David Arenburg [ctb],
Ethan Smith [ctb],
Francois Cocquemas [ctb],
Matthieu Gomez [ctb],
Philippe Chataignon [ctb],
Declan Groves [ctb],
Daniel Possenriede [ctb],
Felipe Parages [ctb],
Denes Toth [ctb],
Mus Yaramaz-David [ctb],
Ayappan Perumal [ctb],
James Sams [ctb],
Martin Morgan [ctb],
Michael Quinn [ctb],
@javrucebo [ctb],
@marc-outins [ctb]
Maintainer: Matt Dowle <mattjdowle@gmail.com>
Diff between data.table versions 1.12.0 dated 2019-01-13 and 1.12.2 dated 2019-04-07
data.table-1.12.0/data.table/R/c.factor.R |only data.table-1.12.0/data.table/README.md |only data.table-1.12.2/data.table/DESCRIPTION | 82 data.table-1.12.2/data.table/MD5 | 159 - data.table-1.12.2/data.table/NAMESPACE | 11 data.table-1.12.2/data.table/NEWS.md | 97 data.table-1.12.2/data.table/R/IDateTime.R | 61 data.table-1.12.2/data.table/R/as.data.table.R | 23 data.table-1.12.2/data.table/R/data.table.R | 241 - data.table-1.12.2/data.table/R/duplicated.R | 3 data.table-1.12.2/data.table/R/fcast.R | 22 data.table-1.12.2/data.table/R/foverlaps.R | 52 data.table-1.12.2/data.table/R/frank.R | 3 data.table-1.12.2/data.table/R/fread.R | 21 data.table-1.12.2/data.table/R/fwrite.R | 7 data.table-1.12.2/data.table/R/onAttach.R | 11 data.table-1.12.2/data.table/R/onLoad.R | 16 data.table-1.12.2/data.table/R/openmp-utils.R | 14 data.table-1.12.2/data.table/R/print.data.table.R | 16 data.table-1.12.2/data.table/R/setkey.R | 38 data.table-1.12.2/data.table/R/shift.R | 1 data.table-1.12.2/data.table/R/test.data.table.R | 135 data.table-1.12.2/data.table/R/transpose.R | 2 data.table-1.12.2/data.table/R/utils.R | 13 data.table-1.12.2/data.table/build/vignette.rds |binary data.table-1.12.2/data.table/inst/doc/datatable-benchmarking.html | 4 data.table-1.12.2/data.table/inst/doc/datatable-faq.html | 6 data.table-1.12.2/data.table/inst/doc/datatable-importing.html | 4 data.table-1.12.2/data.table/inst/doc/datatable-intro.R | 7 data.table-1.12.2/data.table/inst/doc/datatable-intro.Rmd | 7 data.table-1.12.2/data.table/inst/doc/datatable-intro.html | 17 data.table-1.12.2/data.table/inst/doc/datatable-keys-fast-subset.html | 10 data.table-1.12.2/data.table/inst/doc/datatable-reference-semantics.html | 4 data.table-1.12.2/data.table/inst/doc/datatable-reshape.html | 4 data.table-1.12.2/data.table/inst/doc/datatable-secondary-indices-and-auto-indexing.html | 12 data.table-1.12.2/data.table/inst/tests/froll.Rraw |only data.table-1.12.2/data.table/inst/tests/melt_1754.R.gz |only data.table-1.12.2/data.table/inst/tests/melt_1754_synth.csv |only data.table-1.12.2/data.table/inst/tests/other.Rraw | 43 data.table-1.12.2/data.table/inst/tests/test1372-1.Rdata |only data.table-1.12.2/data.table/inst/tests/test1372.Rdata |binary data.table-1.12.2/data.table/inst/tests/tests-DESCRIPTION | 2 data.table-1.12.2/data.table/inst/tests/tests.Rraw | 1450 ++++++---- data.table-1.12.2/data.table/man/assign.Rd | 6 data.table-1.12.2/data.table/man/data.table.Rd | 10 data.table-1.12.2/data.table/man/foverlaps.Rd | 4 data.table-1.12.2/data.table/man/fread.Rd | 2 data.table-1.12.2/data.table/man/froll.Rd | 20 data.table-1.12.2/data.table/man/openmp-utils.Rd | 23 data.table-1.12.2/data.table/man/rbindlist.Rd | 26 data.table-1.12.2/data.table/man/set2key.Rd |only data.table-1.12.2/data.table/man/setDT.Rd | 2 data.table-1.12.2/data.table/man/setkey.Rd | 147 - data.table-1.12.2/data.table/man/setorder.Rd | 55 data.table-1.12.2/data.table/man/shift.Rd | 7 data.table-1.12.2/data.table/man/test.data.table.Rd | 4 data.table-1.12.2/data.table/src/assign.c | 475 +-- data.table-1.12.2/data.table/src/chmatch.c | 127 data.table-1.12.2/data.table/src/data.table.h | 17 data.table-1.12.2/data.table/src/dogroups.c | 126 data.table-1.12.2/data.table/src/fmelt.c | 231 + data.table-1.12.2/data.table/src/forder.c | 59 data.table-1.12.2/data.table/src/frank.c | 25 data.table-1.12.2/data.table/src/fread.c | 21 data.table-1.12.2/data.table/src/fread.h | 2 data.table-1.12.2/data.table/src/freadR.c | 17 data.table-1.12.2/data.table/src/froll.c | 95 data.table-1.12.2/data.table/src/frollR.c | 70 data.table-1.12.2/data.table/src/frolladaptive.c | 161 - data.table-1.12.2/data.table/src/gsumm.c | 4 data.table-1.12.2/data.table/src/ijoin.c | 179 - data.table-1.12.2/data.table/src/init.c | 41 data.table-1.12.2/data.table/src/myomp.h | 7 data.table-1.12.2/data.table/src/openmp-utils.c | 170 - data.table-1.12.2/data.table/src/quickselect.c | 10 data.table-1.12.2/data.table/src/rbindlist.c | 1365 +++------ data.table-1.12.2/data.table/src/reorder.c | 19 data.table-1.12.2/data.table/src/shift.c | 129 data.table-1.12.2/data.table/src/subset.c | 53 data.table-1.12.2/data.table/src/uniqlist.c | 12 data.table-1.12.2/data.table/src/wrappers.c | 9 data.table-1.12.2/data.table/tests/froll.R | 832 ----- data.table-1.12.2/data.table/tests/main.R | 4 data.table-1.12.2/data.table/vignettes/datatable-intro.Rmd | 7 84 files changed, 3485 insertions(+), 3686 deletions(-)
Title: Web Application Framework for R
Description: Makes it incredibly easy to build interactive web
applications with R. Automatic "reactive" binding between inputs and
outputs and extensive prebuilt widgets make it possible to build
beautiful, responsive, and powerful applications with minimal effort.
Author: Winston Chang [aut, cre],
Joe Cheng [aut],
JJ Allaire [aut],
Yihui Xie [aut],
Jonathan McPherson [aut],
RStudio [cph],
jQuery Foundation [cph] (jQuery library and jQuery UI library),
jQuery contributors [ctb, cph] (jQuery library; authors listed in
inst/www/shared/jquery-AUTHORS.txt),
jQuery UI contributors [ctb, cph] (jQuery UI library; authors listed in
inst/www/shared/jqueryui/AUTHORS.txt),
Mark Otto [ctb] (Bootstrap library),
Jacob Thornton [ctb] (Bootstrap library),
Bootstrap contributors [ctb] (Bootstrap library),
Twitter, Inc [cph] (Bootstrap library),
Alexander Farkas [ctb, cph] (html5shiv library),
Scott Jehl [ctb, cph] (Respond.js library),
Stefan Petre [ctb, cph] (Bootstrap-datepicker library),
Andrew Rowls [ctb, cph] (Bootstrap-datepicker library),
Dave Gandy [ctb, cph] (Font-Awesome font),
Brian Reavis [ctb, cph] (selectize.js library),
Kristopher Michael Kowal [ctb, cph] (es5-shim library),
es5-shim contributors [ctb, cph] (es5-shim library),
Denis Ineshin [ctb, cph] (ion.rangeSlider library),
Sami Samhuri [ctb, cph] (Javascript strftime library),
SpryMedia Limited [ctb, cph] (DataTables library),
John Fraser [ctb, cph] (showdown.js library),
John Gruber [ctb, cph] (showdown.js library),
Ivan Sagalaev [ctb, cph] (highlight.js library),
R Core Team [ctb, cph] (tar implementation from R)
Maintainer: Winston Chang <winston@rstudio.com>
Diff between shiny versions 1.2.0 dated 2018-11-02 and 1.3.0 dated 2019-04-07
shiny-1.2.0/shiny/inst/www/reactive-graph.html |only shiny-1.2.0/shiny/man/showReactLog.Rd |only shiny-1.3.0/shiny/DESCRIPTION | 15 shiny-1.3.0/shiny/MD5 | 60 - shiny-1.3.0/shiny/NAMESPACE | 3 shiny-1.3.0/shiny/NEWS.md | 34 shiny-1.3.0/shiny/R/app.R | 32 shiny-1.3.0/shiny/R/bookmark-state.R | 2 shiny-1.3.0/shiny/R/graph.R | 595 ++++++++-- shiny-1.3.0/shiny/R/input-select.R | 2 shiny-1.3.0/shiny/R/middleware-shiny.R | 42 shiny-1.3.0/shiny/R/middleware.R | 7 shiny-1.3.0/shiny/R/react.R | 50 shiny-1.3.0/shiny/R/reactives.R | 254 +++- shiny-1.3.0/shiny/R/render-cached-plot.R | 106 - shiny-1.3.0/shiny/R/server.R | 83 - shiny-1.3.0/shiny/R/shiny.R | 19 shiny-1.3.0/shiny/R/utils.R | 45 shiny-1.3.0/shiny/README.md | 5 shiny-1.3.0/shiny/inst/staticdocs/index.r | 2 shiny-1.3.0/shiny/inst/www/shared/datepicker/js/bootstrap-datepicker.js | 6 shiny-1.3.0/shiny/inst/www/shared/datepicker/js/bootstrap-datepicker.min.js | 2 shiny-1.3.0/shiny/inst/www/shared/shiny.js | 46 shiny-1.3.0/shiny/inst/www/shared/shiny.js.map | 2 shiny-1.3.0/shiny/inst/www/shared/shiny.min.js | 6 shiny-1.3.0/shiny/inst/www/shared/shiny.min.js.map | 2 shiny-1.3.0/shiny/man/addResourcePath.Rd | 6 shiny-1.3.0/shiny/man/reactiveVal.Rd | 2 shiny-1.3.0/shiny/man/reactlog.Rd |only shiny-1.3.0/shiny/man/selectInput.Rd | 2 shiny-1.3.0/shiny/man/shiny-options.Rd | 2 shiny-1.3.0/shiny/tests/testthat/test-options.R | 16 shiny-1.3.0/shiny/tests/testthat/test-reactlog.R |only 33 files changed, 1100 insertions(+), 348 deletions(-)
Title: Functions for Base Types and Core R and 'Tidyverse' Features
Description: A toolbox for working with base types, core R features
like the condition system, and core 'Tidyverse' features like tidy
evaluation.
Author: Lionel Henry [aut, cre],
Hadley Wickham [aut],
RStudio [cph]
Maintainer: Lionel Henry <lionel@rstudio.com>
Diff between rlang versions 0.3.3 dated 2019-03-29 and 0.3.4 dated 2019-04-07
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ NEWS.md | 5 +++++ build/rlang.pdf |binary src/lib/vec-lgl.c | 5 +++-- tests/testthat/test-c-api.R | 10 ++++++++++ tests/testthat/test-trace.R | 2 ++ 7 files changed, 29 insertions(+), 11 deletions(-)
Title: Various Plotting Functions
Description: Lots of plots, various labeling, axis and color scaling functions.
Author: Jim Lemon, Ben Bolker, Sander Oom,
Eduardo Klein, Barry Rowlingson,
Hadley Wickham, Anupam Tyagi,
Olivier Eterradossi, Gabor Grothendieck,
Michael Toews, John Kane, Rolf Turner,
Carl Witthoft, Julian Stander, Thomas Petzoldt,
Remko Duursma, Elisa Biancotto, Ofir Levy,
Christophe Dutang, Peter Solymos, Robby Engelmann,
Michael Hecker, Felix Steinbeck, Hans Borchers,
Henrik Singmann, Ted Toal, Derek Ogle, Darshan Baral,
Ulrike Groemping
Maintainer: Jim Lemon <drjimlemon@gmail.com>
Diff between plotrix versions 3.7-4 dated 2018-10-03 and 3.7-5 dated 2019-04-07
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- R/barNest.R | 6 +++--- R/boxed.labels.R | 10 +++++----- R/brkdnNest.R | 13 +++++++------ R/multhist.R | 37 +++++++++++++++++++------------------ R/placeLabels.R | 2 +- R/radialtext.R | 21 +++++++++------------ man/ehplot.Rd | 8 ++------ 9 files changed, 58 insertions(+), 63 deletions(-)
Title: Programming with Big Data -- Interface to MPI
Description: An efficient interface to MPI by utilizing S4
classes and methods with a focus on Single Program/Multiple Data
('SPMD')
parallel programming style, which is intended for batch parallel
execution.
Author: Wei-Chen Chen [aut, cre],
George Ostrouchov [aut],
Drew Schmidt [aut],
Pragneshkumar Patel [aut],
Hao Yu [aut],
Christian Heckendorf [ctb] (FreeBSD),
Brian Ripley [ctb] (Windows HPC Pack 2012),
R Core team [ctb] (some functions are modified from the base packages)
Maintainer: Wei-Chen Chen <wccsnow@gmail.com>
Diff between pbdMPI versions 0.3-8 dated 2018-08-07 and 0.3-9 dated 2019-04-07
ChangeLog | 24 ++++ DESCRIPTION | 12 +- MD5 | 81 ++++++++------ NAMESPACE | 18 ++- R/111_control.r | 29 +++-- R/222_export_env.r | 1 R/api_task_pull.r | 21 ++- R/comm_balance.r | 3 R/float32.r | 18 +-- R/get_conf.r | 23 +++ R/get_lib.r | 13 ++ R/pkg_tools.r |only R/spmd_recv.r | 167 ++++++++++++++++++++++++++--- R/spmd_send.r | 42 ++++++- R/zzz.r.in | 4 README.md | 1 configure | 76 ++++++++++++- configure.ac | 63 ++++++++++ inst/c_combine_r |only inst/examples/README | 1 inst/examples/test_cs/named.client.r | 1 inst/examples/test_cs/named.server.r | 1 inst/examples/test_cs/simple.client.r | 1 inst/examples/test_cs/simple.server.r | 1 inst/examples/test_long_vector/send_recv.r | 1 inst/examples/test_send_recv |only inst/examples/test_spmd/isend_irecv_wait.r | 1 inst/examples/test_spmd/send_recv.r | 1 inst/tests/mpi_comm_ptr.r |only man/ab_recv-method.Rd | 32 +++++ man/ab_send-method.Rd | 29 ++++- man/yy_get_conf_lib_winmpi.Rd |only man/yy_pkg_tools.Rd |only man/zz_spmd_control.Rd | 2 man/zz_spmd_internal.Rd | 1 src/pkg_global.h | 2 src/pkg_tools.c | 39 ++++++ src/spmd.c | 2 src/spmd_constant.h | 6 - src/zzz.c | 4 40 files changed, 624 insertions(+), 97 deletions(-)
Title: Create Elegant Data Visualisations Using the Grammar of Graphics
Description: A system for 'declaratively' creating graphics,
based on "The Grammar of Graphics". You provide the data, tell 'ggplot2'
how to map variables to aesthetics, what graphical primitives to use,
and it takes care of the details.
Author: Hadley Wickham [aut, cre],
Winston Chang [aut],
Lionel Henry [aut],
Thomas Lin Pedersen [aut],
Kohske Takahashi [aut],
Claus Wilke [aut],
Kara Woo [aut],
RStudio [cph]
Maintainer: Hadley Wickham <hadley@rstudio.com>
Diff between ggplot2 versions 3.1.0 dated 2018-10-25 and 3.1.1 dated 2019-04-07
DESCRIPTION | 6 ++--- MD5 | 38 +++++++++++++++++----------------- R/backports.R | 5 ++++ R/coord-.r | 11 ++++------ R/facet-.r | 17 ++++++++++----- R/facet-wrap.r | 30 +++++++++++++++++++-------- R/grob-dotstack.r | 4 ++- R/guide-colorbar.r | 4 +-- R/guide-legend.r | 6 ++--- R/guides-.r | 4 +-- R/guides-grid.r | 4 +++ R/margins.R | 4 ++- R/position-stack.r | 2 - R/scale-.r | 6 +++-- R/theme.r | 2 - inst/CITATION | 2 - inst/doc/extending-ggplot2.html | 44 +++++++++++++++++++++++++++++----------- inst/doc/ggplot2-specs.html | 34 ++++++++++++++++++++++++------ man/max_height.Rd | 10 ++++++--- tests/testthat/Rplots.pdf |binary 20 files changed, 155 insertions(+), 78 deletions(-)
Title: Clustering and Inference Procedures for High-Dimensional Latent
Variable Models
Description: A complete suite of computationally efficient methods for high dimensional clustering and inference problems in G-Latent Models (a type of Latent Variable Gaussian graphical model). The main feature is the FORCE (First-Order, Certifiable, Efficient) clustering algorithm which is a fast solver for a semi-definite programming (SDP) relaxation of the K-means problem. For certain types of graphical models (G-Latent Models), with high probability the algorithm not only finds the optimal clustering, but produces a certificate of having done so. This certificate, however, is model independent and so can also be used to certify data clustering problems. The 'GFORCE' package also contains implementations of inferential procedures for G-Latent graphical models using n-fold cross validation. Also included are native code implementations of other popular clustering methods such as Lloyd's algorithm with kmeans++ initialization and complete linkage hierarchical clustering. The FORCE method is due to Eisenach and Liu (2019) <arxiv:1806.00530>.
Author: Carson Eisenach [aut, cre]
Maintainer: Carson Eisenach <eisenach@princeton.edu>
Diff between GFORCE versions 0.1.2 dated 2018-06-14 and 0.1.4 dated 2019-04-07
DESCRIPTION | 10 +-- MD5 | 36 +++++------ R/FORCE.R | 2 R/certify.R | 97 +++++++++++++++++++++++++------- R/util_FORCE.R | 47 +++++++++++++++ man/gforce.PECOK.Rd | 4 - man/gforce.certify.Rd | 2 man/gforce.certify_adapt.Rd | 2 man/gforce.generator.Rd | 4 - src/FORCE.c | 60 +++++++++++-------- src/FORCE_adapt.c | 90 ++++++++++++++++------------- src/FORCE_certify.c | 28 +++++---- src/Makevars | 1 src/kmeans.c | 11 +-- src/util.c | 8 +- src/util.h | 2 src/util_FORCE_obj.c | 4 - tests/testthat/test_dual_construction.R | 2 tests/testthat/test_primal_dual.R | 24 ++++--- 19 files changed, 284 insertions(+), 150 deletions(-)
Title: Binarization and Trinarization of One-Dimensional Data
Description: Provides methods for the binarization and trinarization of one-dimensional data and some visualization functions.
Author: Stefan Mundus, Christoph Müssel, Florian Schmid, Ludwig Lausser, Tamara J. Blätte, Martin Hopfensitz, Hans A. Kestler
Maintainer: Hans Kestler <hans.kestler@uni-ulm.de>
Diff between BiTrinA versions 1.2 dated 2017-02-06 and 1.3 dated 2019-04-07
DESCRIPTION | 8 +++--- MD5 | 19 +++++++-------- NAMESPACE | 2 - R/result_TASC.R | 2 - build/vignette.rds |binary inst/doc/Vignette.R | 62 ++++++++++++++++++++++++------------------------- inst/doc/Vignette.Rnw | 8 ++---- inst/doc/Vignette.pdf |binary src/binarizeBASCB.c | 7 +++-- src/packagename_init.c |only vignettes/Vignette.Rnw | 8 ++---- 11 files changed, 58 insertions(+), 58 deletions(-)
Title: Binarization of One-Dimensional Data
Description: Provides methods for the binarization of one-dimensional data and some visualization functions.
Author: Stefan Mundus, Christoph Müssel, Florian Schmid, Ludwig Lausser, Tamara J. Blätte, Martin Hopfensitz, Hans A. Kestler
Maintainer: Hans Kestler <hans.kestler@uni-ulm.de>
Diff between Binarize versions 1.2 dated 2017-02-06 and 1.3 dated 2019-04-07
DESCRIPTION | 8 +++--- MD5 | 19 +++++++-------- NAMESPACE | 2 - R/result_TASC.R | 2 - build/vignette.rds |binary inst/doc/Vignette.R | 62 ++++++++++++++++++++++++------------------------- inst/doc/Vignette.Rnw | 8 ++---- inst/doc/Vignette.pdf |binary src/binarizeBASCB.c | 7 +++-- src/packagename_init.c |only vignettes/Vignette.Rnw | 8 ++---- 11 files changed, 58 insertions(+), 58 deletions(-)
Title: Person Parameter Estimation
Description: The PP package includes estimation of (MLE, WLE, MAP, EAP, ROBUST)
person parameters for the 1,2,3,4-PL model and the GPCM (generalized
partial credit model). The parameters are estimated under the assumption
that the item parameters are known and fixed. The package is useful e.g. in
the case that items from an item pool / item bank with known item parameters
are administered to a new population of test-takers and an ability
estimation for every test-taker is needed.
Author: Manuel Reif [aut],
Jan Steinfeld [cre, aut] (<https://orcid.org/0000-0001-9853-8260>)
Maintainer: Jan Steinfeld <jan.d.steinfeld@gmail.com>
Diff between PP versions 0.6.1 dated 2017-05-12 and 0.6.2 dated 2019-04-07
PP-0.6.1/PP/src/packagename_init.c |only PP-0.6.1/PP/tests/test-all.R |only PP-0.6.1/PP/vignettes/intro_pfit.md |only PP-0.6.1/PP/vignettes/intro_pp.md |only PP-0.6.1/PP/vignettes/ppass_par_and_fit.md |only PP-0.6.2/PP/DESCRIPTION | 32 +- PP-0.6.2/PP/MD5 | 54 +-- PP-0.6.2/PP/R/PP_4pl.R | 40 +- PP-0.6.2/PP/R/PP_gpcm.R | 26 + PP-0.6.2/PP/R/PPall.R | 37 +- PP-0.6.2/PP/R/RcppExports.R | 42 +- PP-0.6.2/PP/build/vignette.rds |binary PP-0.6.2/PP/inst/CITATION | 9 PP-0.6.2/PP/inst/doc/intro_pfit.R | 2 PP-0.6.2/PP/inst/doc/intro_pfit.Rmd | 4 PP-0.6.2/PP/inst/doc/intro_pfit.html | 410 +++++++++++++++------------- PP-0.6.2/PP/inst/doc/intro_pp.html | 198 +++++++------ PP-0.6.2/PP/inst/doc/ppass_par_and_fit.R | 1 PP-0.6.2/PP/inst/doc/ppass_par_and_fit.Rmd | 1 PP-0.6.2/PP/inst/doc/ppass_par_and_fit.html | 237 +++++++++------- PP-0.6.2/PP/man/Jkpp.Rd | 4 PP-0.6.2/PP/man/PP_4pl.Rd | 4 PP-0.6.2/PP/man/PP_gpcm.Rd | 6 PP-0.6.2/PP/man/PPall.Rd | 8 PP-0.6.2/PP/man/PPass.Rd | 10 PP-0.6.2/PP/src/RcppExports.cpp | 72 +++- PP-0.6.2/PP/tests/testthat.R |only PP-0.6.2/PP/tests/testthat/testsgpcm.R | 2 PP-0.6.2/PP/tests/testthat/testsjk.R | 6 PP-0.6.2/PP/vignettes/intro_pfit.Rmd | 4 PP-0.6.2/PP/vignettes/ppass_par_and_fit.Rmd | 1 31 files changed, 684 insertions(+), 526 deletions(-)
Title: 'RStudio' Addins and 'Shiny' Modules for Medical Research
Description: 'RStudio' addins and 'Shiny' modules for descriptive statistics, regression and survival analysis.
Author: Jinseob Kim [aut, cre] (<https://orcid.org/0000-0002-9403-605X>),
Zarathu [cph, fnd]
Maintainer: Jinseob Kim <jinseob2kim@gmail.com>
Diff between jsmodule versions 0.7.10 dated 2019-03-08 and 0.8.0 dated 2019-04-07
DESCRIPTION | 14 +++++++------- MD5 | 46 ++++++++++++++++++++++++++-------------------- NAMESPACE | 13 +++++++++++++ NEWS.md | 9 +++++++++ R/jsBasicGadget.R | 37 +++++++++++++++++++++++++++++++++---- R/jsPropensityGadget.R | 2 +- R/jsRepeatedGadget.R | 31 +++++++++++++++++++++++++++++-- R/jsSurveyGadget.R | 4 ++-- R/kaplan.R | 33 ++++++++++++++++++++++++++------- R/tb1.R | 35 +++++++++++++++++++---------------- R/tb1simple.R | 30 ++++++++++++++++-------------- R/timeroc.R |only README.md | 32 ++++++++++++++++++-------------- build/vignette.rds |binary inst/doc/jsmodule.Rmd | 26 ++++++++++++-------------- inst/doc/jsmodule.html | 35 +++++++++++++++++++---------------- man/kaplanModule.Rd | 11 ++++++++++- man/survIDINRI_helper.Rd |only man/tb1module.Rd | 5 ++++- man/tb1module2.Rd | 7 +++++-- man/tb1simple.Rd | 4 +++- man/tb1simple2.Rd | 4 +++- man/timeROC_table.Rd |only man/timeROChelper.Rd |only man/timerocModule.Rd |only man/timerocUI.Rd |only vignettes/jsmodule.Rmd | 26 ++++++++++++-------------- 27 files changed, 267 insertions(+), 137 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-03-08 2.1.3
Title: Bayesian Structure Learning in Graphical Models using
Birth-Death MCMC
Description: Statistical tools for Bayesian structure learning in undirected graphical models for continuous, discrete, and mixed data. The package is implemented the recent improvements in the Bayesian graphical models literature, including Mohammadi and Wit (2015) <doi:10.1214/14-BA889>, Letac et al. (2018) <arXiv:1706.04416>, Dobra and Mohammadi (2018) <doi:10.1214/18-AOAS1164>, Mohammadi et al. (2017) <doi:10.1111/rssc.12171>. To speed up the computations, the BDMCMC sampling algorithms are implemented in parallel using OpenMP in C++.
Author: Reza Mohammadi [aut, cre] <https://orcid.org/0000-0001-9538-0648>,
Ernst Wit [aut] <https://orcid.org/0000-0002-3671-9610>,
Adrian Dobra [ctb]
Maintainer: Reza Mohammadi <a.mohammadi@uva.nl>
Diff between BDgraph versions 2.56 dated 2019-03-19 and 2.57 dated 2019-04-07
DESCRIPTION | 8 - MD5 | 16 +-- R/bdgraph.R | 16 ++- R/compare.R | 220 ++++++++++++++++++++++--------------------------- R/plotroc.R | 6 - inst/doc/vignette.pdf |binary man/BDgraph-package.Rd | 2 man/compare.Rd | 26 +++-- man/plotroc.Rd | 11 +- 9 files changed, 147 insertions(+), 158 deletions(-)