Title: Interface to the World Database on Protected Areas
Description: Fetch and clean data from the World Database on Protected
Areas (WDPA). Data is obtained from Protected Planet
<http://protectedplanet.net>.
Author: Jeffrey O Hanson [aut, cre]
Maintainer: Jeffrey O Hanson <jeffrey.hanson@uqconnect.edu.au>
Diff between wdpar versions 0.0.2 dated 2019-02-12 and 0.0.3 dated 2019-04-09
DESCRIPTION | 6 +++--- MD5 | 16 ++++++++-------- NEWS.md | 8 ++++++++ R/wdpa_clean.R | 2 +- R/wdpa_url.R | 10 ++++------ README.md | 2 +- build/vignette.rds |binary inst/doc/wdpar.html | 6 +++--- man/wdpa_clean.Rd | 2 +- 9 files changed, 29 insertions(+), 23 deletions(-)
Title: Secure Shell (SSH) Client for R
Description: Connect to a remote server over SSH to transfer files via SCP,
setup a secure tunnel, or run a command or script on the host while
streaming stdout and stderr directly to the client.
Author: Jeroen Ooms [aut, cre] (<https://orcid.org/0000-0002-4035-0289>)
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>
Diff between ssh versions 0.5 dated 2019-03-27 and 0.6 dated 2019-04-09
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS | 4 ++++ src/session.c | 7 +++---- 4 files changed, 13 insertions(+), 10 deletions(-)
Title: Bio-Logging Toolbox
Description: An R-shiny application to plot datalogger time series at a microsecond precision as Acceleration, Temperature,
Pressure, Light intensity from CATS, AXY-TREK LUL and WACU bio-loggers. It is possible to link behavioral labels extracted
from 'BORIS' software <http://www.boris.unito.it> or manually written in a csv file.
CATS bio-logger are manufactured by <http://www.cats.is>, AXY-TREK are manufactured by <http://www.technosmart.eu> and
LUL and WACU are manufactured by <http://www.iphc.cnrs.fr/-MIBE-.html>.
Author: Sebastien Geiger [aut, cre]
Maintainer: Sebastien Geiger <sebastien.geiger@iphc.cnrs.fr>
Diff between rblt versions 0.2.3.6 dated 2019-02-03 and 0.2.4.0 dated 2019-04-09
DESCRIPTION | 12 +- MD5 | 32 +++-- NAMESPACE | 9 + R/default.R | 124 ++++++++++++++++++++-- R/logger.R | 263 +++++++++++++++++++++++++++++++++++++++++++---- R/loggerui.R | 123 +++++++++++++++++++++ build/vignette.rds |binary inst/doc/rblt.Rmd | 209 ++++++++++++++++++------------------- inst/doc/rblt.html | 212 ++++++++++++++++++------------------- man/Logger-class.Rd | 4 man/LoggerData-class.Rd |only man/LoggerLul-class.Rd |only man/LoggerUI-class.Rd | 2 man/Metric-class.Rd | 2 man/MetricList-class.Rd | 6 + man/ZoomHistory-class.Rd |only man/demo_gui.Rd |only man/demolul2h5.Rd |only man/lul2h5.Rd |only vignettes/rblt.Rmd | 209 ++++++++++++++++++------------------- 20 files changed, 843 insertions(+), 364 deletions(-)
Title: Dynamic Simulation and Testing for Single-Equation ARDL Models
Description: While autoregressive distributed lag (ARDL) models allow for extremely flexible dynamics, interpreting substantive significance of complex lag structures remains difficult. This package is designed to assist users in dynamically simulating and plotting the results of various ARDL models. It also contains post-estimation diagnostics, including a test for cointegration when estimating the error-correction variant of the autoregressive distributed lag model (Pesaran, Shin, and Smith 2001 <doi:10.1002/jae.616>).
Author: Soren Jordan [aut, cre, cph],
Andrew Q. Philips [aut]
Maintainer: Soren Jordan <sorenjordanpols@gmail.com>
Diff between dynamac versions 0.1.7 dated 2019-02-28 and 0.1.8 dated 2019-04-09
dynamac-0.1.7/dynamac/man/area.simulation.plot.Rd |only dynamac-0.1.7/dynamac/man/spike.simulation.plot.Rd |only dynamac-0.1.8/dynamac/DESCRIPTION | 6 dynamac-0.1.8/dynamac/MD5 | 22 - dynamac-0.1.8/dynamac/NAMESPACE | 1 dynamac-0.1.8/dynamac/R/dynamac.R | 348 ++++++++++++++++--- dynamac-0.1.8/dynamac/inst/doc/dynamac-vignette.R | 10 dynamac-0.1.8/dynamac/inst/doc/dynamac-vignette.Rmd | 14 dynamac-0.1.8/dynamac/inst/doc/dynamac-vignette.html | 181 +++++---- dynamac-0.1.8/dynamac/inst/dynamac-manual.pdf |binary dynamac-0.1.8/dynamac/man/dynamac-deprecated.Rd |only dynamac-0.1.8/dynamac/man/dynardl.simulation.plot.Rd |only dynamac-0.1.8/dynamac/tests/testthat/test-dynardl.R | 2 dynamac-0.1.8/dynamac/vignettes/dynamac-vignette.Rmd | 14 14 files changed, 435 insertions(+), 163 deletions(-)
Title: Data Cloud Geometry (DCG): Using Random Walks to Find Community
Structure in Social Network Analysis
Description: Data cloud geometry (DCG) applies random walks in finding community structures for social networks.
Fushing, VanderWaal, McCowan, & Koehl (2013) (<doi:10.1371/journal.pone.0056259>).
Author: Chen Chen [aut],
Jian Jin [aut],
Jessica Vandeleest [aut, cre],
Brianne Beisner [aut],
Brenda McCowan [aut, cph],
Hsieh Fushing [aut, cph]
Maintainer: Jessica Vandeleest <vandelee@ucdavis.edu>
Diff between DCG versions 0.9.2 dated 2016-06-13 and 0.9.3 dated 2019-04-09
DESCRIPTION | 21 - MD5 | 68 ++-- NAMESPACE | 30 +- NEWS.md | 12 R/EstClust.R | 214 +++++++------- R/GetSim.R | 56 +-- R/MakeSeries.R | 264 +++++++++--------- R/getEigenvalues.R | 76 ++--- R/getEnsList.R | 156 +++++----- R/imports.R | 8 R/monkeyGrooming.R | 24 - R/plotEigenvalues.R | 200 ++++++------- R/plotTrees.R | 174 +++++------ R/similarityMatrix.R | 466 ++++++++++++++++---------------- R/temperature_select.R | 106 +++---- build/vignette.rds |binary inst/doc/Introduction_to_DCG.R | 70 ++-- inst/doc/Introduction_to_DCG.Rmd | 256 ++++++++--------- inst/doc/Introduction_to_DCG.html | 349 ++++++++++++----------- man/GetSim.Rd | 65 ++-- man/as.SimilarityMatrix.Rd | 49 +-- man/as.symmetricAdjacencyMatrix.Rd | 109 +++---- man/getEigenvalueList.Rd | 39 +- man/getEns.Rd | 63 ++-- man/getEnsList.Rd | 117 +++----- man/monkeyGrooming.Rd | 41 +- man/plotCLUSTERS.Rd | 143 ++++----- man/plotMultiEigenvalues.Rd | 153 +++++----- man/plotTheCluster.Rd | 47 +-- man/temperatureSample.Rd | 108 +++---- tests/testthat.R | 8 tests/testthat/test-as.simMat.R | 146 +++++----- tests/testthat/test-getEnsList.R | 56 +-- tests/testthat/test-temperatureSample.R | 22 - vignettes/Introduction_to_DCG.Rmd | 256 ++++++++--------- 35 files changed, 1995 insertions(+), 1977 deletions(-)
Title: Bayesian Inference of Non-Linear and Non-Gaussian State Space
Models
Description: Efficient methods for Bayesian inference of state space models
via particle Markov chain Monte Carlo and parallel importance sampling type weighted
Markov chain Monte Carlo (Vihola, Helske, and Franks, 2017, <arXiv:1609.02541>).
Gaussian, Poisson, binomial, or negative binomial
observation densities and basic stochastic volatility models with Gaussian state
dynamics, as well as general non-linear Gaussian models and discretised diffusion models
are supported.
Author: Jouni Helske [aut, cre] (<https://orcid.org/0000-0001-7130-793X>),
Matti Vihola [aut] (<https://orcid.org/0000-0002-8041-7222>)
Maintainer: Jouni Helske <jouni.helske@iki.fi>
Diff between bssm versions 0.1.6-1 dated 2018-11-22 and 0.1.7 dated 2019-04-09
DESCRIPTION | 23 MD5 | 38 NAMESPACE | 1 NEWS | 9 R/RcppExports.R | 44 R/bootstrap_filter.R | 6 R/sim_smoother.R | 47 inst/doc/bssm.pdf | 2361 ++++++++++++++++++++++------------------------ inst/doc/growth_model.pdf |binary man/bootstrap_filter.Rd | 18 man/sim_smoother.Rd | 40 src/R_psi.cpp | 32 src/RcppExports.cpp | 157 +-- src/mcmc.cpp | 2 src/nlg_amcmc.cpp | 6 src/nlg_ssm.cpp | 7 src/sde_amcmc.cpp | 2 src/ugg_ssm.cpp | 30 src/ugg_ssm.h | 2 src/ung_amcmc.cpp | 8 20 files changed, 1479 insertions(+), 1354 deletions(-)
Title: Linear and Nonlinear Mixed Effects Models
Description: Fit and compare Gaussian linear and nonlinear mixed-effects models.
Author: José Pinheiro [aut] (S version),
Douglas Bates [aut] (up to 2007),
Saikat DebRoy [ctb] (up to 2002),
Deepayan Sarkar [ctb] (up to 2005),
EISPACK authors [ctb] (src/rs.f),
Siem Heisterkamp [ctb] (Author fixed sigma),
Bert Van Willigen [ctb] (Programmer fixed sigma),
R-core [aut, cre]
Maintainer: R-core <R-core@R-project.org>
Diff between nlme versions 3.1-138 dated 2019-04-07 and 3.1-139 dated 2019-04-09
ChangeLog | 12 ++++++++++++ DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/groupedData.R | 8 ++++---- 4 files changed, 23 insertions(+), 11 deletions(-)
Title: Reading Bibliometric Data from Lattes Platform
Description: A simple API for downloading and reading xml data directly from Lattes <http://lattes.cnpq.br/>.
Author: Marcelo Perlin [aut, cre]
Maintainer: Marcelo Perlin <marceloperlin@gmail.com>
Diff between GetLattesData versions 1.2 dated 2018-10-11 and 1.3 dated 2019-04-09
DESCRIPTION | 10 ++--- MD5 | 18 ++++----- NEWS.md | 23 +++++++---- R/gld_get_lattes_data_from_zip.R | 22 ++++++++--- R/gld_read_lattes_zip.R | 34 ++++++++++++++--- README.md | 21 ---------- build/vignette.rds |binary inst/doc/gld_vignette-ReadLattes.Rmd | 4 +- inst/doc/gld_vignette-ReadLattes.html | 66 ++++++++++++++++++++++++---------- vignettes/gld_vignette-ReadLattes.Rmd | 4 +- 10 files changed, 127 insertions(+), 75 deletions(-)
Title: Extra Themes, Scales and Geoms for 'ggplot2'
Description: Some extra themes, geoms, and scales for 'ggplot2'.
Provides 'ggplot2' themes and scales that replicate the look of plots
by Edward Tufte, Stephen Few, 'Fivethirtyeight', 'The Economist', 'Stata',
'Excel', and 'The Wall Street Journal', among others.
Provides 'geoms' for Tufte's box plot and range frame.
Author: Jeffrey B. Arnold [aut, cre] (<https://orcid.org/0000-0001-9953-3904>),
Gergely Daroczi [ctb],
Bo Werth [ctb],
Brian Weitzner [ctb],
Joshua Kunst [ctb],
Baptise Auguie [ctb],
Bob Rudis [ctb],
Hadley Wickham [ctb] (Code from the ggplot2 package.),
Justin Talbot [ctb] (Code from the labeling package),
Joshua London [ctb]
Maintainer: Jeffrey B. Arnold <jeffrey.arnold@gmail.com>
Diff between ggthemes versions 4.1.0 dated 2019-02-19 and 4.1.1 dated 2019-04-09
DESCRIPTION | 6 +++--- MD5 | 22 +++++++++++----------- NAMESPACE | 1 + NEWS.md | 5 +++++ R/colorblind.R | 2 +- R/geom-rangeframe.R | 3 ++- R/geom-tufteboxplot.R | 1 + R/pander.R | 4 ++-- build/ggthemes.pdf |binary man/colorblind.Rd | 2 +- man/palette_pander.Rd | 2 +- man/scale_pander.Rd | 2 +- 12 files changed, 29 insertions(+), 21 deletions(-)
Title: Make 'ggplot2' Graphics Interactive
Description: Create interactive 'ggplot2' graphics using 'htmlwidgets'.
Author: David Gohel [aut, cre],
Panagiotis Skintzos [ctb],
Mike Bostock [cph] (d3.js),
Speros Kokenes [cph] (d3-lasso),
Eric Shull [cph] (saveSvgAsPng js library),
Eric Book [ctb] (hline and vline geoms)
Maintainer: David Gohel <david.gohel@ardata.fr>
Diff between ggiraph versions 0.6.0 dated 2018-11-01 and 0.6.1 dated 2019-04-09
DESCRIPTION | 12 ++- MD5 | 65 +++++++++--------- NAMESPACE | 3 NEWS | 10 ++ R/annotate_interactive.R |only R/ggiraph.R | 14 ++- R/girafe.R | 20 ++--- R/girafe_options.R | 59 +++++++++++++--- R/interactive_path_grob.R | 4 - R/interactive_points_grob.R | 4 - R/interactive_polygon_grob.R | 4 - R/interactive_polyline_grob.R | 4 - R/interactive_rect_grob.R | 4 - R/interactive_segments_grob.R | 4 - R/interactive_text_grob.R | 4 - R/tracers.R | 44 ++++++------ README.md | 14 --- build/vignette.rds |binary inst/doc/overview.html | 5 + inst/examples/rmd/flexdashboard/flexdashboard.Rmd | 4 - inst/examples/shiny/dynamicUI |only inst/htmlwidgets/girafe.js | 22 ++++-- inst/htmlwidgets/lib/ggiraphjs-0.1.0/ggiraphjs.min.js | 2 inst/htmlwidgets/lib/ggiraphjs-0.1.0/styles.css | 1 man/annotate_interactive.Rd |only man/geom_histogram_interactive.Rd | 7 + man/geom_hline_interactive.Rd | 2 man/geom_point_interactive.Rd | 2 man/geom_vline_interactive.Rd | 2 man/ggiraph.Rd | 6 - man/girafe.Rd | 8 -- man/girafe_options.Rd | 2 man/opts_sizing.Rd |only src/dsvg.cpp | 20 +---- tests/testthat/test-svg-interactive.R | 12 +-- 35 files changed, 218 insertions(+), 146 deletions(-)
Title: R Package Installation from Remote Repositories, Including
'GitHub'
Description: Download and install R packages stored in 'GitHub',
'BitBucket', or plain 'subversion' or 'git' repositories. This package
provides the 'install_*' functions in 'devtools'.
Indeed most of the code was copied over from 'devtools'.
Author: Gábor Csárdi [aut, cre],
Hadley Wickham [aut],
Winston Chang [aut],
Jim Hester [aut],
RStudio [cph],
Martin Morgan [aut],
Dan Tenenbaum [aut],
Mango Solutions [cph]
Maintainer: Gábor Csárdi <csardi.gabor@gmail.com>
Diff between remotes versions 2.0.2 dated 2018-10-30 and 2.0.3 dated 2019-04-09
remotes-2.0.2/remotes/inst/README.markdown |only remotes-2.0.3/remotes/DESCRIPTION | 17 + remotes-2.0.3/remotes/MD5 | 92 +++++----- remotes-2.0.3/remotes/NEWS.md | 48 +++++ remotes-2.0.3/remotes/R/bioc.R | 2 remotes-2.0.3/remotes/R/deps.R | 31 ++- remotes-2.0.3/remotes/R/download.R | 115 +++++++++---- remotes-2.0.3/remotes/R/github.R | 35 +++ remotes-2.0.3/remotes/R/install-bioc.R | 2 remotes-2.0.3/remotes/R/install-bitbucket.R | 21 +- remotes-2.0.3/remotes/R/install-cran.R | 2 remotes-2.0.3/remotes/R/install-git.R | 2 remotes-2.0.3/remotes/R/install-github.R | 8 remotes-2.0.3/remotes/R/install-gitlab.R | 7 remotes-2.0.3/remotes/R/install-local.R | 2 remotes-2.0.3/remotes/R/install-remote.R | 8 remotes-2.0.3/remotes/R/install-svn.R | 2 remotes-2.0.3/remotes/R/install-url.R | 2 remotes-2.0.3/remotes/R/install-version.R | 4 remotes-2.0.3/remotes/R/install.R | 15 + remotes-2.0.3/remotes/R/submodule.R | 3 remotes-2.0.3/remotes/R/utils.R | 57 ++++++ remotes-2.0.3/remotes/README.md | 47 ++++- remotes-2.0.3/remotes/build/vignette.rds |binary remotes-2.0.3/remotes/inst/doc/dependencies.html | 33 +++ remotes-2.0.3/remotes/inst/install-github.R |only remotes-2.0.3/remotes/inst/install-github.Rin |only remotes-2.0.3/remotes/man/install_bioc.Rd | 16 + remotes-2.0.3/remotes/man/install_bitbucket.Rd | 25 ++ remotes-2.0.3/remotes/man/install_cran.Rd | 18 +- remotes-2.0.3/remotes/man/install_deps.Rd | 14 - remotes-2.0.3/remotes/man/install_git.Rd | 12 - remotes-2.0.3/remotes/man/install_github.Rd | 16 + remotes-2.0.3/remotes/man/install_gitlab.Rd | 22 +- remotes-2.0.3/remotes/man/install_local.Rd | 12 - remotes-2.0.3/remotes/man/install_svn.Rd | 12 - remotes-2.0.3/remotes/man/install_url.Rd | 18 +- remotes-2.0.3/remotes/man/install_version.Rd | 14 - remotes-2.0.3/remotes/man/package_deps.Rd | 12 - remotes-2.0.3/remotes/man/update_packages.Rd | 12 - remotes-2.0.3/remotes/tests/testthat/Biobase |only remotes-2.0.3/remotes/tests/testthat/MASS |only remotes-2.0.3/remotes/tests/testthat/helper.R | 15 + remotes-2.0.3/remotes/tests/testthat/test-bioc.R | 4 remotes-2.0.3/remotes/tests/testthat/test-deps.R | 4 remotes-2.0.3/remotes/tests/testthat/test-download.R | 87 +++++++-- remotes-2.0.3/remotes/tests/testthat/test-install-dev.R | 18 ++ remotes-2.0.3/remotes/tests/testthat/test-install-github.R | 10 - remotes-2.0.3/remotes/tests/testthat/test-script.R |only remotes-2.0.3/remotes/tests/testthat/test-utils.R | 18 -- 50 files changed, 642 insertions(+), 272 deletions(-)
More information about noaastormevents at CRAN
Permanent link
More information about SurrogateOutcome at CRAN
Permanent link
Title: Mixture Hidden Markov Models for Social Sequence Data and Other
Multivariate, Multichannel Categorical Time Series
Description: Designed for fitting hidden (latent) Markov models and mixture
hidden Markov models for social sequence data and other categorical time series.
Also some more restricted versions of these type of models are available: Markov
models, mixture Markov models, and latent class models. The package supports
models for one or multiple subjects with one or multiple parallel sequences
(channels). External covariates can be added to explain cluster membership in
mixture models. The package provides functions for evaluating and comparing
models, as well as functions for visualizing of multichannel sequence data and
hidden Markov models. Models are estimated using maximum likelihood via the EM
algorithm and/or direct numerical maximization with analytical gradients. All
main algorithms are written in C++ with support for parallel computation.
Documentation is available via several vignettes in this page, and the
paper by Helske and Helske (2019, <doi:10.18637/jss.v088.i03>).
Author: Jouni Helske [aut, cre] (<https://orcid.org/0000-0001-7130-793X>),
Satu Helske [aut] (<https://orcid.org/0000-0003-0532-0153>)
Maintainer: Jouni Helske <jouni.helske@iki.fi>
Diff between seqHMM versions 1.0.10 dated 2019-01-26 and 1.0.11 dated 2019-04-09
DESCRIPTION | 12 MD5 | 72 NEWS | 8 R/RcppExports.R | 24 R/estimate_coef.R | 126 R/fit_model.R | 2 R/forwardBackward.R | 2 R/hidden_paths.R | 2 R/logLik.hmm.R | 2 R/logLik.mhmm.R | 2 R/plot.hmm.R | 2 R/vcov.mhmm.R | 2 build/vignette.rds |binary inst/CITATION | 2 inst/doc/seqHMM.Rnw | 2 inst/doc/seqHMM.pdf | 4421 ++++++++++++++++---------------- inst/doc/seqHMM_algorithms.pdf |binary inst/doc/seqHMM_estimation.pdf |binary inst/doc/seqHMM_visualization.pdf |binary man/build_mhmm.Rd | 4 man/fit_model.Rd | 4 man/plot.mhmm.Rd | 4 man/plot.ssp.Rd | 4 man/seqHMM.Rd | 4 src/EM.cpp | 28 src/EMx.cpp | 2 src/RcppExports.cpp | 94 src/objective.cpp | 2 src/objectivex.cpp | 4 src/viterbi.cpp | 2 src/viterbix.cpp | 2 vignettes/code_plottingHMMbasic-1.pdf |only vignettes/code_plottingMHMMbasic-1.pdf |only vignettes/graphicalillustrations2-1.pdf |only vignettes/graphicalillustrations5-1.pdf |only vignettes/gridplot1-1.pdf |only vignettes/plottingHMM-1.pdf |only vignettes/plottingsequences-1.pdf |only vignettes/references.bib | 13 vignettes/seqHMM.Rnw | 2 vignettes/ssplotHMM-1.pdf |only 41 files changed, 2492 insertions(+), 2358 deletions(-)
Title: Functions to Support Extension Education Program Evaluation
Description: Functions and datasets to support "Summary and Analysis of
Extension Program Evaluation in R" and "An R
Companion for the Handbook of Biological Statistics".
Vignettes are available at <http://rcompanion.org>.
Author: Salvatore Mangiafico [aut, cre]
Maintainer: Salvatore Mangiafico <mangiafico@njaes.rutgers.edu>
Diff between rcompanion versions 2.1.1 dated 2019-03-02 and 2.1.7 dated 2019-04-09
DESCRIPTION | 8 +- MD5 | 46 ++++++------ NAMESPACE | 1 R/cliffDelta.r | 10 +- R/cohenG.r | 170 ++++++++++++++++++++++++++++++++++++++++++++-- R/cramerV.r | 5 - R/cramerVFit.r | 20 ++--- R/epsilonSquared.r | 2 R/freemanTheta.r | 2 R/multiVDA.r |only R/vda.r | 6 + R/wilcoxonOneSampleR.r | 4 - R/wilcoxonPairedR.r | 2 R/wilcoxonR.r | 9 +- man/cliffDelta.Rd | 5 + man/cohenG.Rd | 23 +++++- man/cramerV.Rd | 3 man/cramerVFit.Rd | 17 ++-- man/epsilonSquared.Rd | 2 man/freemanTheta.Rd | 2 man/multiVDA.Rd |only man/vda.Rd | 5 + man/wilcoxonOneSampleR.Rd | 4 - man/wilcoxonPairedR.Rd | 2 man/wilcoxonR.Rd | 9 +- 25 files changed, 276 insertions(+), 81 deletions(-)
Title: Create Interactive Graphs with 'Echarts JavaScript' Version 4
Description: Easily create interactive charts by leveraging the 'Echarts Javascript' library which includes
34 chart types, themes, 'Shiny' proxies and animations.
Author: John Coene [aut, cre]
Maintainer: John Coene <jcoenep@gmail.com>
Diff between echarts4r versions 0.2.1 dated 2019-01-05 and 0.2.2 dated 2019-04-09
DESCRIPTION | 8 - MD5 | 37 +++---- NAMESPACE | 7 + NEWS.md | 11 ++ R/add__.R |only R/echarts4r.R | 13 +- R/facets.R | 2 R/grid.R | 97 +++++++++++++++---- R/group2series.R | 10 + R/helpers.R | 61 +++++++++++ R/opts.R | 12 +- R/proxies.R | 48 +++++++++ inst/htmlwidgets/echarts4r.js | 40 +++++++ inst/htmlwidgets/lib/echarts-4.3.2/themes/weforum.js | 26 +++-- man/axis.Rd | 42 ++++++-- man/e_draw_p.Rd |only man/e_facet.Rd | 2 man/e_single_axis.Rd | 2 man/e_title.Rd | 3 man/echartsNJSON.Rd |only man/init.Rd | 12 +- 21 files changed, 352 insertions(+), 81 deletions(-)
Title: Multi-Model Inference
Description: Tools for performing model selection and model averaging. Automated
model selection through subsetting the maximum model, with optional
constraints for model inclusion. Model parameter and prediction
averaging based on model weights derived from information criteria
(AICc and alike) or custom model weighting schemes.
Author: Kamil Bartoń
Maintainer: Kamil Bartoń <kamil.barton@go2.pl>
Diff between MuMIn versions 1.42.1 dated 2018-07-23 and 1.43.6 dated 2019-04-09
MuMIn-1.42.1/MuMIn/R/importance.R |only MuMIn-1.42.1/MuMIn/man/importance.Rd |only MuMIn-1.42.1/MuMIn/tests/classes.R |only MuMIn-1.42.1/MuMIn/tests/coxme.R |only MuMIn-1.43.6/MuMIn/DESCRIPTION | 18 - MuMIn-1.43.6/MuMIn/MD5 | 104 ++++--- MuMIn-1.43.6/MuMIn/NAMESPACE | 28 +- MuMIn-1.43.6/MuMIn/NEWS | 51 +++ MuMIn-1.43.6/MuMIn/R/arm.glm.R | 8 MuMIn-1.43.6/MuMIn/R/averaging.R |only MuMIn-1.43.6/MuMIn/R/class-gamlss.R |only MuMIn-1.43.6/MuMIn/R/class-unmarkedFit.R | 7 MuMIn-1.43.6/MuMIn/R/class-wgee.R |only MuMIn-1.43.6/MuMIn/R/coefTable.R | 2 MuMIn-1.43.6/MuMIn/R/dredge.R | 32 +- MuMIn-1.43.6/MuMIn/R/get.models.R | 5 MuMIn-1.43.6/MuMIn/R/is.R | 18 - MuMIn-1.43.6/MuMIn/R/loo.R | 1 MuMIn-1.43.6/MuMIn/R/makeArgs.R | 1 MuMIn-1.43.6/MuMIn/R/model.avg.R | 364 -------------------------- MuMIn-1.43.6/MuMIn/R/model.sel.R | 2 MuMIn-1.43.6/MuMIn/R/modify.model.selection.R | 6 MuMIn-1.43.6/MuMIn/R/pdredge.R | 24 - MuMIn-1.43.6/MuMIn/R/predict.averaging.R |only MuMIn-1.43.6/MuMIn/R/quasiLik.R | 76 +++-- MuMIn-1.43.6/MuMIn/R/r.squaredGLMM2.R | 53 ++- MuMIn-1.43.6/MuMIn/R/stdize.R | 6 MuMIn-1.43.6/MuMIn/R/substitution.R | 47 +-- MuMIn-1.43.6/MuMIn/R/sumofweights.R |only MuMIn-1.43.6/MuMIn/R/umf_specs.R | 121 ++++---- MuMIn-1.43.6/MuMIn/R/utils-misc.R | 13 MuMIn-1.43.6/MuMIn/R/utils-models.R | 2 MuMIn-1.43.6/MuMIn/R/weights-bg.R | 1 MuMIn-1.43.6/MuMIn/R/weights-boot.R | 3 MuMIn-1.43.6/MuMIn/R/weights-jackknife.R | 1 MuMIn-1.43.6/MuMIn/data/Beetle.rda |binary MuMIn-1.43.6/MuMIn/data/Cement.rda |binary MuMIn-1.43.6/MuMIn/data/GPA.rda |binary MuMIn-1.43.6/MuMIn/man/MuMIn-package.Rd | 8 MuMIn-1.43.6/MuMIn/man/QAIC.Rd | 3 MuMIn-1.43.6/MuMIn/man/QIC.Rd | 6 MuMIn-1.43.6/MuMIn/man/Weights.Rd | 2 MuMIn-1.43.6/MuMIn/man/cos2weights.Rd | 5 MuMIn-1.43.6/MuMIn/man/dredge.Rd | 126 ++++----- MuMIn-1.43.6/MuMIn/man/jackknifeWeights.Rd | 5 MuMIn-1.43.6/MuMIn/man/loo.Rd | 5 MuMIn-1.43.6/MuMIn/man/model.avg.Rd | 9 MuMIn-1.43.6/MuMIn/man/plot.Rd | 2 MuMIn-1.43.6/MuMIn/man/predict.averaging.Rd | 2 MuMIn-1.43.6/MuMIn/man/r.squaredGLMM.Rd | 15 - MuMIn-1.43.6/MuMIn/man/r.squaredLR.Rd | 4 MuMIn-1.43.6/MuMIn/man/stdize.Rd | 8 MuMIn-1.43.6/MuMIn/man/sumofweights.Rd |only MuMIn-1.43.6/MuMIn/man/supported-classes.Rd | 6 MuMIn-1.43.6/MuMIn/tests/gam.R |only MuMIn-1.43.6/MuMIn/tests/glm.R |only MuMIn-1.43.6/MuMIn/tests/glm.nb.R |only MuMIn-1.43.6/MuMIn/tests/multinom.R |only MuMIn-1.43.6/MuMIn/tests/nlme.R |only MuMIn-1.43.6/MuMIn/tests/quasibinomial.R |only MuMIn-1.43.6/MuMIn/tests/rlm.R |only MuMIn-1.43.6/MuMIn/tests/survival.R |only 62 files changed, 517 insertions(+), 683 deletions(-)
Title: Tools and GUI for Analyzing Data of Just Finance and
Econometrics
Description: Support the analysis of global assets selection and portfolio backtesting, we also enhance the computation of some performance ratios of 'PerformanceAnalytics'.
Author: Ho Tsung-wu
Maintainer: Ho Tsung-wu <tsungwu@ntnu.edu.tw>
Diff between JFE versions 2.0 dated 2019-01-26 and 2.1.1 dated 2019-04-09
DESCRIPTION | 19 ++++++++---------- MD5 | 43 ++++++++++++++++++++++++++++++++++++----- NAMESPACE | 3 +- R/02price.R | 2 - R/04assetsSelection.R | 31 ++++++++++++++--------------- R/05Portfolio.R | 18 ++++++++++++----- R/PerformanceIndex.R |only data |only man/ActivePremium.Rd |only man/AdjustedSharpeRatio.Rd |only man/AppraisalRatio.Rd |only man/BernardoLedoitRatio.Rd |only man/BurkeRatio.Rd |only man/CAPM.jensenAlpha.Rd |only man/CalmarRatio.Rd |only man/DRatio.Rd |only man/DownsideDeviation.Rd |only man/DrawdownPeak.Rd |only man/InformationRatio.Rd |only man/KellyRatio.Rd |only man/M2Sortino.Rd |only man/MartinRatio.Rd |only man/MeanAbsoluteDeviation.Rd |only man/OmegaSharpeRatio.Rd |only man/PainIndex.Rd |only man/PainRatio.Rd |only man/ProspectRatio.Rd |only man/Return.annualized.Rd |only man/SharpeRatio.Rd |only man/SharpeRatio.annualized.Rd |only man/SkewnessKurtosisRatio.Rd |only man/SortinoRatio.Rd |only man/TrackingError.Rd |only man/TreynorRatio.Rd |only man/UlcerIndex.Rd |only man/VolatilitySkewness.Rd |only man/data-sets.Rd |only man/maxDrawdown.Rd |only man/table.AnnualizedReturns.Rd |only 39 files changed, 78 insertions(+), 38 deletions(-)
Title: Time Series Forecasting Using Nearest Neighbors
Description: Allows to forecast time series using nearest neighbors regression
Francisco Martinez, Maria P. Frias, Maria D. Perez-Godoy and Antonio J.
Rivera (2017) <doi:10.1007/s10462-017-9593-z>. When the forecasting horizon
is higher than 1, two multi-step ahead forecasting strategies can be used.
The model built is autoregressive, that is, it is only based on the
observations of the time series. The nearest neighbors used in a prediction
can be consulted and plotted.
Author: Francisco Martinez [aut, cre]
Maintainer: Francisco Martinez <fmartin@ujaen.es>
Diff between tsfknn versions 0.1.0 dated 2018-03-27 and 0.2.0 dated 2019-04-09
DESCRIPTION | 22 +- MD5 | 32 +- NAMESPACE | 4 NEWS.md |only R/forecasting.R | 83 ++++++- R/knn.R | 13 + R/plotting.R | 7 R/print_knnForecast.R |only R/tsfknn.R | 2 README.md | 2 build/vignette.rds |binary inst/doc/tsfknn.Rmd | 33 +-- inst/doc/tsfknn.html | 324 ++++++++++++++++++++++++++---- man/knn_forecasting.Rd | 16 - man/n_training_examples.Rd |only man/tsfknn.Rd | 2 tests/testthat/test_n_training_examples.R |only tests/testthat/test_regression.R | 11 + vignettes/tsfknn.Rmd | 33 +-- 19 files changed, 462 insertions(+), 122 deletions(-)
Title: Interface to 'TensorFlow' Datasets
Description: Interface to 'TensorFlow' Datasets, a high-level library for
building complex input pipelines from simple, re-usable pieces.
See <https://www.tensorflow.org/programmers_guide/datasets> for additional
details.
Author: Daniel Falbel [ctb, cph, cre],
JJ Allaire [aut, cph],
Yuan Tang [aut] (<https://orcid.org/0000-0001-5243-233X>),
Kevin Ushey [aut],
RStudio [cph, fnd],
Google Inc. [cph]
Maintainer: Daniel Falbel <daniel@rstudio.com>
Diff between tfdatasets versions 1.9 dated 2018-08-25 and 1.13.1 dated 2019-04-09
DESCRIPTION | 19 ++-- MD5 | 116 ++++++++++++++-------------- R/dataset_iterators.R | 2 R/dataset_methods.R | 36 +++++--- R/iterators.R | 53 +++++++++--- R/sql_dataset.R | 2 R/symbols.R |only R/text_line_dataset.R | 44 ++++++---- R/utils.R | 21 +---- README.md | 3 build/vignette.rds |binary inst/doc/introduction.R | 2 inst/doc/introduction.Rmd | 4 inst/doc/introduction.html | 28 ++++++ man/dataset_batch.Rd | 1 man/dataset_cache.Rd | 1 man/dataset_concatenate.Rd | 1 man/dataset_decode_delim.Rd | 1 man/dataset_filter.Rd | 1 man/dataset_interleave.Rd | 1 man/dataset_map.Rd | 1 man/dataset_map_and_batch.Rd | 1 man/dataset_padded_batch.Rd | 1 man/dataset_prefetch.Rd | 1 man/dataset_prefetch_to_device.Rd | 1 man/dataset_repeat.Rd | 1 man/dataset_shard.Rd | 1 man/dataset_shuffle.Rd | 1 man/dataset_shuffle_and_repeat.Rd | 4 man/dataset_skip.Rd | 1 man/dataset_take.Rd | 1 man/delim_record_spec.Rd | 2 man/file_list_dataset.Rd | 2 man/iterator_get_next.Rd | 1 man/iterator_initializer.Rd | 1 man/iterator_make_initializer.Rd | 1 man/iterator_string_handle.Rd | 1 man/make-iterator.Rd | 1 man/make_csv_dataset.Rd | 20 ++-- man/read_files.Rd | 4 man/reexports.Rd | 2 man/sample_from_datasets.Rd | 5 - man/sparse_tensor_slices_dataset.Rd | 1 man/tensor_slices_dataset.Rd | 1 man/tensors_dataset.Rd | 1 man/text_line_dataset.Rd | 5 - man/tfrecord_dataset.Rd | 4 man/until_out_of_range.Rd | 1 tests/testthat/test-dataset-fitting.R |only tests/testthat/test-dataset-iterators.R | 53 ++++++++---- tests/testthat/test-dataset-methods.R | 43 ++++++++-- tests/testthat/test-dataset-prepare.R | 69 +++++++++++----- tests/testthat/test-fixed-length-datasets.R | 10 +- tests/testthat/test-input-fn.R | 4 tests/testthat/test-iterators.R | 70 +++++++++++----- tests/testthat/test-range-dataset.R | 20 +++- tests/testthat/test-read-files.R | 11 +- tests/testthat/test-tensor-datasets.R | 3 tests/testthat/utils.R | 15 +++ vignettes/introduction.Rmd | 4 60 files changed, 464 insertions(+), 241 deletions(-)
Title: Interface to 'Sigma.js' Graph Visualization Library
Description: Interface to 'sigma.js' graph visualization library including animations, plugins and shiny proxies.
Author: John Coene [aut, cre] (<https://orcid.org/0000-0002-6637-4107>)
Maintainer: John Coene <jcoenep@gmail.com>
Diff between sigmajs versions 0.1.2 dated 2018-11-18 and 0.1.3 dated 2019-04-09
sigmajs-0.1.2/sigmajs/demo |only sigmajs-0.1.2/sigmajs/inst/examples |only sigmajs-0.1.2/sigmajs/inst/htmlwidgets/lib/sigma.js-1.2.1/plugins/sigma.exporters.svg.js |only sigmajs-0.1.2/sigmajs/inst/htmlwidgets/lib/sigma.js-1.2.1/plugins/sigma.neo4j.cypher.min.js |only sigmajs-0.1.2/sigmajs/inst/htmlwidgets/lib/sigma.js-1.2.1/plugins/sigma.parsers.json.min.js |only sigmajs-0.1.2/sigmajs/inst/htmlwidgets/lib/sigma.js-1.2.1/plugins/sigma.pathfinding.astar.min.js |only sigmajs-0.1.2/sigmajs/inst/htmlwidgets/lib/sigma.js-1.2.1/plugins/sigma.plugins.filter.js |only sigmajs-0.1.2/sigmajs/inst/htmlwidgets/lib/sigma.js-1.2.1/plugins/sigma.plugins.neighborhoods.js |only sigmajs-0.1.2/sigmajs/inst/htmlwidgets/lib/sigma.js-1.2.1/plugins/sigma.renderers.edgeDots.min.js |only sigmajs-0.1.2/sigmajs/inst/htmlwidgets/lib/sigma.js-1.2.1/plugins/sigma.renderers.snapshot.js |only sigmajs-0.1.2/sigmajs/inst/htmlwidgets/lib/sigma.js-1.2.1/plugins/sigma.statistics.HITS.min.js |only sigmajs-0.1.2/sigmajs/man/sg_kill.Rd |only sigmajs-0.1.3/sigmajs/DESCRIPTION | 10 sigmajs-0.1.3/sigmajs/MD5 | 160 sigmajs-0.1.3/sigmajs/NAMESPACE | 22 sigmajs-0.1.3/sigmajs/R/buttons.R | 1 sigmajs-0.1.3/sigmajs/R/camera.R | 24 sigmajs-0.1.3/sigmajs/R/change.R |only sigmajs-0.1.3/sigmajs/R/cluster.R | 12 sigmajs-0.1.3/sigmajs/R/filter.R | 97 sigmajs-0.1.3/sigmajs/R/force.R | 4 sigmajs-0.1.3/sigmajs/R/from_gexf.R | 5 sigmajs-0.1.3/sigmajs/R/get.R |only sigmajs-0.1.3/sigmajs/R/graph.R | 121 sigmajs-0.1.3/sigmajs/R/graph_proxies.R | 254 + sigmajs-0.1.3/sigmajs/R/helpers.R | 53 sigmajs-0.1.3/sigmajs/R/layouts.R | 12 sigmajs-0.1.3/sigmajs/R/neighbours.R | 20 sigmajs-0.1.3/sigmajs/R/noverlap.R | 7 sigmajs-0.1.3/sigmajs/R/sigmajs.R | 19 sigmajs-0.1.3/sigmajs/R/utils.R | 22 sigmajs-0.1.3/sigmajs/R/zzz.R | 17 sigmajs-0.1.3/sigmajs/README.md | 4 sigmajs-0.1.3/sigmajs/inst/doc/animate.Rmd | 6 sigmajs-0.1.3/sigmajs/inst/doc/animate.html | 1624 ++------- sigmajs-0.1.3/sigmajs/inst/doc/buttons.Rmd | 47 sigmajs-0.1.3/sigmajs/inst/doc/buttons.html | 1671 +++------- sigmajs-0.1.3/sigmajs/inst/doc/cluster.html | 1605 ++------- sigmajs-0.1.3/sigmajs/inst/doc/dynamic.R | 41 sigmajs-0.1.3/sigmajs/inst/doc/dynamic.Rmd | 49 sigmajs-0.1.3/sigmajs/inst/doc/dynamic.html | 1657 +++------ sigmajs-0.1.3/sigmajs/inst/doc/formats.R | 7 sigmajs-0.1.3/sigmajs/inst/doc/formats.Rmd | 12 sigmajs-0.1.3/sigmajs/inst/doc/formats.html | 1616 ++------- sigmajs-0.1.3/sigmajs/inst/doc/get_started.html | 1605 ++------- sigmajs-0.1.3/sigmajs/inst/doc/layout.Rmd | 6 sigmajs-0.1.3/sigmajs/inst/doc/layout.html | 1612 ++------- sigmajs-0.1.3/sigmajs/inst/doc/plugins.html | 1623 ++------- sigmajs-0.1.3/sigmajs/inst/doc/settings.html | 1597 ++------- sigmajs-0.1.3/sigmajs/inst/doc/shiny.R | 15 sigmajs-0.1.3/sigmajs/inst/doc/shiny.Rmd | 29 sigmajs-0.1.3/sigmajs/inst/doc/shiny.html | 208 - sigmajs-0.1.3/sigmajs/inst/doc/talkcross.html | 1613 ++------- sigmajs-0.1.3/sigmajs/inst/htmlwidgets/sigmajs.js | 446 ++ sigmajs-0.1.3/sigmajs/inst/htmlwidgets/sigmajs.yaml | 9 sigmajs-0.1.3/sigmajs/man/change.Rd |only sigmajs-0.1.3/sigmajs/man/clear-kill.Rd | 13 sigmajs-0.1.3/sigmajs/man/cluster.Rd | 11 sigmajs-0.1.3/sigmajs/man/color-scale.Rd |only sigmajs-0.1.3/sigmajs/man/drops_p.Rd | 7 sigmajs-0.1.3/sigmajs/man/figures |only sigmajs-0.1.3/sigmajs/man/filter.Rd | 27 sigmajs-0.1.3/sigmajs/man/force.Rd | 3 sigmajs-0.1.3/sigmajs/man/get_graph.Rd |only sigmajs-0.1.3/sigmajs/man/graph.Rd | 8 sigmajs-0.1.3/sigmajs/man/layout.Rd | 11 sigmajs-0.1.3/sigmajs/man/neighbours.Rd | 10 sigmajs-0.1.3/sigmajs/man/noverlap.Rd | 4 sigmajs-0.1.3/sigmajs/man/read-batch.Rd |only sigmajs-0.1.3/sigmajs/man/read-static.Rd |only sigmajs-0.1.3/sigmajs/man/read.Rd |only sigmajs-0.1.3/sigmajs/man/sg_button.Rd | 1 sigmajs-0.1.3/sigmajs/man/sg_from_gexf.Rd | 5 sigmajs-0.1.3/sigmajs/man/sg_zoom_p.Rd |only sigmajs-0.1.3/sigmajs/tests/testthat.R | 2 sigmajs-0.1.3/sigmajs/vignettes/animate.Rmd | 6 sigmajs-0.1.3/sigmajs/vignettes/arctic.gexf |only sigmajs-0.1.3/sigmajs/vignettes/buttons.Rmd | 47 sigmajs-0.1.3/sigmajs/vignettes/dynamic.Rmd | 49 sigmajs-0.1.3/sigmajs/vignettes/formats.Rmd | 12 sigmajs-0.1.3/sigmajs/vignettes/layout.Rmd | 6 sigmajs-0.1.3/sigmajs/vignettes/shiny.Rmd | 29 82 files changed, 6373 insertions(+), 11840 deletions(-)
More information about reinforcelearn at CRAN
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Title: Performs Common Linear Algebra Operations Used in Quantum
Computing
Description: Contains basic structures and operations used frequently in quantum computing. Intended to be a convenient tool to help in practicing the linear algebra involved in quantum operations. Has functionality for the creation of arbitrarily sized kets, bras, matrices and implements quantum gates, inner products, and tensor products. Contains all commonly used quantum gates, creates arbitrarily controlled versions of all gates, and can simulate complete or partial measurements of kets. Implements modular arithmetic commonly found in quantum algorithms and can convert functions into equivalent quantum gates. It can also simulate larger applications, including the Quantum Fourier Transform developed by Shor (1999), Shor's algorithm which factors numbers up to 21, Grover's algorithm (1996), the Quantum Approximation Optimization Algorithm (QAOA) (Farhi, Goldstone, and Gutmann 2014) <arXiv:1411.4028>, and the training of a quantum neural network developed by Schuld (2018) <arXiv:1804.00633> which can classify the MNIST dataset.
Author: Salonik Resch
Maintainer: Salonik Resch <resc0059@umn.edu>
Diff between QuantumOps versions 2.5 dated 2019-03-15 and 2.5.1 dated 2019-04-09
DESCRIPTION | 8 - MD5 | 12 + NAMESPACE | 2 R/QAOA_maxcut.R |only R/QuantumMNIST256Classifier.R | 291 +++++++++++++++++++++++---------------- R/randomConnectionMatrix.R |only man/QAOA_maxcut.Rd |only man/QuantumMNIST256Classifier.Rd | 24 ++- man/randomConnectionMatrix.Rd |only 9 files changed, 210 insertions(+), 127 deletions(-)
Title: Mendelian Randomization Package
Description: Encodes several methods for performing Mendelian randomization
analyses with summarized data. Summarized data on genetic associations with the
exposure and with the outcome can be obtained from large consortia. These data
can be used for obtaining causal estimates using instrumental variable methods.
Author: Olena Yavorska <olena.yavorska@ludwig.ox.ac.uk>
James Staley <james.staley@bristol.ac.uk>
Maintainer: Stephen Burgess <sb452@medschl.cam.ac.uk>
Diff between MendelianRandomization versions 0.4.0 dated 2019-03-07 and 0.4.1 dated 2019-04-09
DESCRIPTION | 8 - MD5 | 114 ++++++++++++------------ R/AllClasses.R | 6 + R/AllGenerics.R | 10 +- R/mr_conmix-methods.R | 18 ++- R/pheno_input-function.R | 1 build/vignette.rds |binary man/Egger-class.Rd | 122 +++++++++++++------------- man/IVW-class.Rd | 86 +++++++++--------- man/MRAll-class.Rd | 38 ++++---- man/MRConMix-class.Rd | 78 ++++++++-------- man/MRHetPen-class.Rd | 74 +++++++-------- man/MRInput-class.Rd | 84 +++++++++--------- man/MRMBE-class.Rd | 74 +++++++-------- man/MRMVInput-class.Rd | 76 ++++++++-------- man/MVEgger-class.Rd | 102 +++++++++++----------- man/MVIVW-class.Rd | 78 ++++++++-------- man/MaxLik-class.Rd | 82 ++++++++--------- man/WeightedMedian-class.Rd | 66 +++++++------- man/calcium.Rd | 68 +++++++------- man/ci_normal.Rd | 62 ++++++------- man/ci_t.Rd | 66 +++++++------- man/coursedata.Rd | 28 +++--- man/decimals.Rd | 54 +++++------ man/egger.bounds.Rd | 78 ++++++++-------- man/extract.pheno.csv.Rd | 158 +++++++++++++++++----------------- man/getter.Rd | 104 +++++++++++----------- man/het.weight.Rd | 62 ++++++------- man/ldlc.Rd | 102 +++++++++++----------- man/loglikelihood.Rd | 58 ++++++------ man/loglikelihoodcorrel.Rd | 58 ++++++------ man/loglikelihoodrhocorrel.Rd | 54 +++++------ man/mbe_boot.Rd | 64 ++++++------- man/mbe_est.Rd | 58 ++++++------ man/model.prior.Rd | 58 ++++++------ man/mr_allmethods.Rd | 86 +++++++++--------- man/mr_conmix.Rd | 124 +++++++++++++------------- man/mr_egger.Rd | 176 ++++++++++++++++++------------------- man/mr_hetpen.Rd | 126 +++++++++++++-------------- man/mr_input.Rd | 118 ++++++++++++------------- man/mr_ivw.Rd | 190 ++++++++++++++++++++--------------------- man/mr_maxlik.Rd | 144 +++++++++++++++---------------- man/mr_mbe.Rd | 140 +++++++++++++++--------------- man/mr_median.Rd | 176 ++++++++++++++++++------------------- man/mr_mvegger.Rd | 134 ++++++++++++++-------------- man/mr_mvinput.Rd | 112 ++++++++++++------------ man/mr_mvivw.Rd | 132 ++++++++++++++-------------- man/mr_plot.Rd | 106 +++++++++++----------- man/penalised.weights.Rd | 66 +++++++------- man/penalised.weights.delta.Rd | 70 +++++++-------- man/pheno_input.Rd | 110 +++++++++++------------ man/phenoscanner.Rd | 104 +++++++++++----------- man/r.weights.Rd | 58 ++++++------ man/r.weights.delta.Rd | 76 ++++++++-------- man/simpleCap.Rd | 50 +++++----- man/values.Rd | 46 ++++----- man/weighted.median.Rd | 54 +++++------ man/weighted.median.boot.se.Rd | 76 ++++++++-------- 58 files changed, 2370 insertions(+), 2353 deletions(-)
More information about MendelianRandomization at CRAN
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Title: Temporal Process Regression
Description: Regression models for temporal process responses with
time-varying coefficient.
Author: Jun Yan <jyan@stat.uconn.edu>
Maintainer: Jun Yan <jyan@stat.uconn.edu>
Diff between tpr versions 0.3-1 dated 2010-04-12 and 0.3-1.1 dated 2019-04-09
tpr-0.3-1.1/tpr/DESCRIPTION | 9 tpr-0.3-1.1/tpr/MD5 |only tpr-0.3-1.1/tpr/data/dnase.tab.xz |only tpr-0.3-1.1/tpr/inst/include/famstr.h | 274 ++--- tpr-0.3-1.1/tpr/inst/include/gee2.h | 164 +-- tpr-0.3-1.1/tpr/inst/include/geese.h | 16 tpr-0.3-1.1/tpr/inst/include/geesubs.h | 444 ++++----- tpr-0.3-1.1/tpr/inst/include/inter.h | 86 - tpr-0.3-1.1/tpr/inst/include/ordgee.h | 226 ++-- tpr-0.3-1.1/tpr/inst/include/param.h | 216 ++-- tpr-0.3-1.1/tpr/inst/include/tnt/cholesky.h | 192 +-- tpr-0.3-1.1/tpr/inst/include/tnt/cmat.h | 1210 ++++++++++++------------ tpr-0.3-1.1/tpr/inst/include/tnt/fcscmat.h | 330 +++--- tpr-0.3-1.1/tpr/inst/include/tnt/fmat.h | 1154 +++++++++++------------ tpr-0.3-1.1/tpr/inst/include/tnt/fortran.h | 134 +- tpr-0.3-1.1/tpr/inst/include/tnt/fspvec.h | 336 +++--- tpr-0.3-1.1/tpr/inst/include/tnt/index.h | 166 +-- tpr-0.3-1.1/tpr/inst/include/tnt/lapack.h | 386 +++---- tpr-0.3-1.1/tpr/inst/include/tnt/lu.h | 408 ++++---- tpr-0.3-1.1/tpr/inst/include/tnt/qr.h | 458 ++++----- tpr-0.3-1.1/tpr/inst/include/tnt/region1d.h | 742 +++++++-------- tpr-0.3-1.1/tpr/inst/include/tnt/region2d.h | 934 +++++++++---------- tpr-0.3-1.1/tpr/inst/include/tnt/stopwatch.h | 166 +-- tpr-0.3-1.1/tpr/inst/include/tnt/subscript.h | 116 +- tpr-0.3-1.1/tpr/inst/include/tnt/tnt.h | 180 +-- tpr-0.3-1.1/tpr/inst/include/tnt/tntmath.h | 170 +-- tpr-0.3-1.1/tpr/inst/include/tnt/tntreqs.h | 140 +- tpr-0.3-1.1/tpr/inst/include/tnt/transv.h | 320 +++--- tpr-0.3-1.1/tpr/inst/include/tnt/triang.h | 1276 +++++++++++++------------- tpr-0.3-1.1/tpr/inst/include/tnt/trisolve.h | 368 +++---- tpr-0.3-1.1/tpr/inst/include/tnt/vec.h | 806 ++++++++-------- tpr-0.3-1.1/tpr/inst/include/tnt/vecadaptor.h | 578 +++++------ tpr-0.3-1.1/tpr/inst/include/tnt/version.h | 40 tpr-0.3-1.1/tpr/inst/include/tntsupp.h | 1112 +++++++++++----------- tpr-0.3-1.1/tpr/inst/include/utils.h | 124 +- tpr-0.3-1.1/tpr/src/ee.cc | 14 tpr-0.3-1.1/tpr/src/famstr.cc | 9 tpr-0.3-1.1/tpr/src/gof.cc | 13 tpr-0.3-1.1/tpr/src/inter.cc | 13 tpr-0.3-1.1/tpr/src/interp.cc | 13 tpr-0.3-1.1/tpr/src/lgtdl.cc | 8 tpr-0.3-1.1/tpr/src/param.cc | 4 tpr-0.3-1.1/tpr/src/utils.cc | 4 tpr-0.3-1/tpr/data/dnase.tab |only 44 files changed, 6679 insertions(+), 6680 deletions(-)
Title: The Integration Between 'IBM COGNOS TM1' and R
Description: Useful functions to connect to 'TM1' <https://www.ibm.com/uk-en/marketplace/planning-and-analytics> instance from R via REST API. With the functions in the package, data can be imported from 'TM1' via mdx view or native view, data can be sent to 'TM1', processes and chores can be executed, and cube and dimension metadata information can be taken.
Author: Muhammed Ali Onder
Maintainer: Muhammed Ali Onder <muhammedalionder@gmail.com>
Diff between tm1r versions 1.1.1 dated 2018-10-30 and 1.1.2 dated 2019-04-09
DESCRIPTION | 6 +++--- MD5 | 7 +++++-- R/tm1_get_data.R | 13 +++++++++++-- R/tm1_get_dimension_attributes.R |only README.md |only man/tm1_get_dimension_attributes.Rd |only 6 files changed, 19 insertions(+), 7 deletions(-)
Title: Hydrologic Modelling System for R Users
Description: Hydrologic modelling system is an object oriented tool which enables R users to simulate and analyze hydrologic events. The package proposes functions and methods for construction, simulation, visualization, and calibration of hydrologic systems.
Author: Rezgar Arabzadeh; Shahab Araghinejad
Maintainer: Rezgar Arabzadeh <rezgararabzadeh@ut.ac.ir>
Diff between RHMS versions 1.5 dated 2019-03-04 and 1.6 dated 2019-04-09
DESCRIPTION | 10 ++++---- MD5 | 14 +++++++----- R/createDiversion.default.R | 8 +++---- R/reservoirRouting.base.R | 12 ++++++---- R/set.as.R |only R/sim.base.R | 1 man/RHMS-package.Rd | 5 ++-- man/addObjectToBasin.Rd | 50 ++++++++++++++++++++++++-------------------- man/set.as.Rd |only 9 files changed, 56 insertions(+), 44 deletions(-)
Title: Two Stage Hazard Rate Comparison
Description: Two-stage procedure compares hazard rate functions,
which may or may not cross each other.
Author: Jun Sheng, Peihua Qiu <pqiu@ufl.edu>, and Charles J. Geyer
<charlie@stat.umn.edu>
Maintainer: Charles J. Geyer <charlie@stat.umn.edu>
Diff between TSHRC versions 0.1-5 dated 2017-03-27 and 0.1-6 dated 2019-04-09
DESCRIPTION | 10 +++++----- MD5 | 4 ++-- src/Makevars | 2 +- 3 files changed, 8 insertions(+), 8 deletions(-)
Title: Pretty Descriptive Stats
Description: Functions for conventionally formatting descriptive stats,
reshaping data frames and formatting R output as HTML.
Author: Jim Lemon <drjimlemon@gmail.com>,
Philippe Grosjean <phgrosjean@sciviews.org>
Maintainer: Jim Lemon <drjimlemon@gmail.com>
Diff between prettyR versions 2.2-2 dated 2018-10-23 and 2.2-3 dated 2019-04-09
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- NEWS | 4 ++++ R/delim.table.R | 38 +++++++++++++++++++++++--------------- R/print.xtab.R | 13 +++++++------ R/xtab.R | 33 ++++++++++++++++++--------------- man/delim.table.Rd | 4 +++- man/print.xtab.Rd | 5 +++-- man/xtab.Rd | 4 +++- 9 files changed, 73 insertions(+), 52 deletions(-)
Title: Practical Numerical Math Functions
Description: Provides a large number of functions from numerical analysis and
linear algebra, numerical optimization, differential equations,
time series, plus some well-known special mathematical functions.
Uses 'MATLAB' function names where appropriate to simplify porting.
Author: Hans W. Borchers [aut, cre]
Maintainer: Hans W. Borchers <hwborchers@googlemail.com>
Diff between pracma versions 2.2.2 dated 2018-12-02 and 2.2.5 dated 2019-04-09
DESCRIPTION | 12 ++++++------ MD5 | 36 +++++++++++++++++++----------------- NEWS | 19 +++++++++++++++++++ NEWS.md | 19 +++++++++++++++++++ R/broyden.R | 2 ++ R/fletcherpowell.R | 10 +++++----- R/fminsearch.R | 7 +------ R/fsolve.R | 2 ++ R/linearproj.R |only R/qpspecial.R | 50 ++++++++++++++++++++++++++++++++++++++++++++++++++ data/brown72.rda |binary data/nile.rda |binary data/titanium.rda |binary man/broyden.Rd | 3 ++- man/fletcherpowell.Rd | 5 ----- man/fminsearch.Rd | 7 +++---- man/fsolve.Rd | 3 ++- man/linearproj.Rd |only man/qpspecial.Rd | 35 ++++++++++++++++++++++++++++------- man/steep_descent.Rd | 2 +- 20 files changed, 159 insertions(+), 53 deletions(-)
Title: Community Dynamics Metrics
Description: Univariate and multivariate temporal and spatial diversity indices,
rank abundance curves, and community stability measures. The functions
implement measures that are either explicitly temporal and include the
option to calculate them over multiple replicates, or spatial and include
the option to calculate them over multiple time points. Functions fall into
five categories: static diversity indices, temporal diversity indices,
spatial diversity indices, rank abundance curves, and community stability
measures. The diversity indices are temporal and spatial analogs to
traditional diversity indices. Specifically, the package includes functions
to calculate community richness, evenness and diversity at a given point in
space and time. In addition, it contains functions to calculate species
turnover, mean rank shifts, and lags in community similarity between two
time points.
Author: Lauren Hallett [aut],
Meghan L. Avolio [aut],
Ian T. Carroll [aut],
Sydney K. Jones [aut],
A. Andrew M. MacDonald [aut],
Dan F. B. Flynn [aut],
Peter Slaughter [aut],
Julie Ripplinger [aut],
Scott L. Collins [aut],
Corinna Gries [aut],
Matthew B. Jones [aut, cre]
Maintainer: Matthew B. Jones <jones@nceas.ucsb.edu>
Diff between codyn versions 2.0.1 dated 2019-03-08 and 2.0.2 dated 2019-04-09
DESCRIPTION | 8 MD5 | 36 +- NEWS | 8 R/RAC_difference.R | 4 R/multivariate_change_and_difference.R | 2 build/vignette.rds |binary inst/doc/Community_Stability_Metrics.Rmd | 6 inst/doc/Community_Stability_Metrics.html | 464 ++++++++++++++++++++------- inst/doc/Temporal_Diversity_Indices.Rmd | 12 inst/doc/Temporal_Diversity_Indices.html | 499 ++++++++++++++++++++++-------- inst/doc/codyn_overview.Rmd | 2 inst/doc/codyn_overview.html | 224 +++++++++++-- man/multivariate_difference.Rd | 2 tests/testthat/test_RAC_difference.R | 6 tests/testthat/test_community_stability.R | 4 tests/testthat/test_utilities.R | 28 - vignettes/Community_Stability_Metrics.Rmd | 6 vignettes/Temporal_Diversity_Indices.Rmd | 12 vignettes/codyn_overview.Rmd | 2 19 files changed, 985 insertions(+), 340 deletions(-)
Title: Radiomics Image Analysis Toolbox for Medial Images
Description: Radiomics image analysis toolbox for 2D and 3D radiological images. RIA supports DICOM, NIfTI and
nrrd file formats. RIA calculates first-order, gray level co-occurrence matrix,
gray level run length matrix and geometry-based statistics. Almost all calculations are done
using vectorized formulas to optimize run speeds. Calculation of several thousands of parameters
only takes minutes on a single core of a conventional PC.
Author: Marton Kolossvary [aut, cre]
Maintainer: Marton Kolossvary <marton.kolossvary@gmail.com>
Diff between RIA versions 1.4.1 dated 2018-06-24 and 1.4.2 dated 2019-04-09
DESCRIPTION | 14 MD5 | 22 R/create_header_nifti.R | 2 README.md | 2 build/vignette.rds |binary inst/doc/RIA.html | 3358 +++++++++++++++++++++++++----------------------- man/discretize.Rd | 4 man/geometry.Rd | 3 man/glcm_all.Rd | 6 man/load_dicom.Rd | 12 man/load_nrrd.Rd | 7 man/radiomics_all.Rd | 4 12 files changed, 1793 insertions(+), 1641 deletions(-)
Title: Data and Functions Used in Linear Models and Regression with R:
An Integrated Approach
Description: Data files and a few functions used in the book
'Linear Models and Regression with R: An Integrated Approach'
by Debasis Sengupta and Sreenivas Rao Jammalamadaka (2019).
Author: Debasis Sengupta <shairiksengupta@gmail.com>, S. Rao Jammalamadaka <rao@gmail.com>,
Jinwen Qiu <qjwsnow_ctw@hotmail.com>
Maintainer: Jinwen Qiu <qjwsnow_ctw@hotmail.com>
Diff between lmreg versions 1.1 dated 2019-01-28 and 1.2 dated 2019-04-09
lmreg-1.1/lmreg/data/birthwt.rda |only lmreg-1.1/lmreg/man/birthwt.Rd |only lmreg-1.2/lmreg/DESCRIPTION | 8 ++++---- lmreg-1.2/lmreg/MD5 | 8 +++----- lmreg-1.2/lmreg/man/cisngl.Rd | 7 ++++--- lmreg-1.2/lmreg/man/hanova.Rd | 4 ++-- 6 files changed, 13 insertions(+), 14 deletions(-)
Title: Lightning Fast Serialization of Data Frames for R
Description: Multithreaded serialization of compressed data frames using the
'fst' format. The 'fst' format allows for random access of stored data and
compression with the LZ4 and ZSTD compressors created by Yann Collet. The ZSTD
compression library is owned by Facebook Inc.
Author: Mark Klik [aut, cre, cph],
Yann Collet [ctb, cph] (Yann Collet is author of the bundled LZ4 and
ZSTD code and copyright holder of LZ4),
Facebook, Inc. [cph] (Bundled ZSTD code)
Maintainer: Mark Klik <markklik@gmail.com>
Diff between fst versions 0.8.10 dated 2018-12-13 and 0.9.0 dated 2019-04-09
fst-0.8.10/fst/src/flex_store_v1.cpp |only fst-0.8.10/fst/src/flex_store_v1.h |only fst-0.8.10/fst/src/fstcore_v1 |only fst-0.9.0/fst/DESCRIPTION | 8 - fst-0.9.0/fst/MD5 | 85 ++++------- fst-0.9.0/fst/R/RcppExports.R | 8 - fst-0.9.0/fst/R/fst.R | 23 +-- fst-0.9.0/fst/R/fst_table.R | 98 +++++++++---- fst-0.9.0/fst/R/openmp.R | 4 fst-0.9.0/fst/man/fst.Rd | 3 fst-0.9.0/fst/man/metadata_fst.Rd | 3 fst-0.9.0/fst/man/threads_fst.Rd | 2 fst-0.9.0/fst/man/write_fst.Rd | 5 fst-0.9.0/fst/src/Makevars | 9 - fst-0.9.0/fst/src/RcppExports.cpp | 14 - fst-0.9.0/fst/src/flex_store.cpp | 125 +++++++--------- fst-0.9.0/fst/src/flex_store.h | 4 fst-0.9.0/fst/src/fst_blockrunner_char.cpp | 4 fst-0.9.0/fst/src/fst_blockrunner_char.h | 7 fst-0.9.0/fst/src/fst_column.h | 126 +++++++++++------ fst-0.9.0/fst/src/fst_column_factory.h | 4 fst-0.9.0/fst/src/fst_compress.cpp | 12 + fst-0.9.0/fst/src/fst_string_vector_container.h |only fst-0.9.0/fst/src/fst_table.cpp | 140 ++++++++++++------- fst-0.9.0/fst/src/fst_table.h | 28 ++- fst-0.9.0/fst/src/fst_type_factory.h | 5 fst-0.9.0/fst/src/fstcore/character/character_v6.cpp | 4 fst-0.9.0/fst/src/fstcore/factor/factor_v7.cpp | 44 +++-- fst-0.9.0/fst/src/fstcore/factor/factor_v7.h | 6 fst-0.9.0/fst/src/fstcore/interface/fstcompressor.h | 35 ++-- fst-0.9.0/fst/src/fstcore/interface/fststore.cpp | 71 +++++---- fst-0.9.0/fst/src/fstcore/interface/fststore.h | 7 fst-0.9.0/fst/src/fstcore/interface/icolumnfactory.h | 2 fst-0.9.0/fst/src/fstcore/interface/ifstcolumn.h | 1 fst-0.9.0/fst/src/fstcore/interface/ifsttable.h | 7 fst-0.9.0/fst/src/init.c | 8 - fst-0.9.0/fst/tests/testthat/FactorStore/data1.fst |binary fst-0.9.0/fst/tests/testthat/test_fst_table.R | 33 +++- fst-0.9.0/fst/tests/testthat/test_keys.R | 2 fst-0.9.0/fst/tests/testthat/test_legacy.R | 127 ----------------- 40 files changed, 554 insertions(+), 510 deletions(-)
Title: Completing Ranks
Description: Functions for completing and recalculating rankings and sorting.
Author: Jim Lemon <drjimlemon@gmail.com>,
Maintainer: Jim Lemon <drjimlemon@gmail.com>
Diff between crank versions 1.1-1 dated 2019-03-17 and 1.1-2 dated 2019-04-09
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- R/spsort.R | 3 ++- 3 files changed, 8 insertions(+), 7 deletions(-)
Title: List Comprehensions
Description: Provides 'Python'-style list comprehensions.
List comprehension expressions use usual loops (for(), while() and repeat()) and
usual if() as list producers. In many cases it gives more concise notation than
standard "*apply + filter" strategy.
Author: Gregory Demin [aut, cre]
Maintainer: Gregory Demin <gdemin@gmail.com>
Diff between comprehenr versions 0.6.0 dated 2019-03-17 and 0.6.5 dated 2019-04-09
DESCRIPTION | 6 +- MD5 | 20 ++++----- NAMESPACE | 1 NEWS | 4 + R/to_list.R | 91 +++++++++++++++++++++++++++++++++++------- inst/doc/Introduction.R | 25 +++++++++++ inst/doc/Introduction.html | 74 ++++++++++++++++++++++++++++++++++ inst/doc/Introduction.rmd | 33 +++++++++++++++ man/to_list.Rd | 39 +++++++++++++++++- tests/testthat/test_to_list.R | 25 ++++++++++- vignettes/Introduction.rmd | 33 +++++++++++++++ 11 files changed, 318 insertions(+), 33 deletions(-)