Title: Capital Budgeting Analysis, Annuity Loan Calculations and
Amortization Schedules
Description: Provides Capital Budgeting Analysis functionality and the essential Annuity loan functions.
Also computes Loan Amortization Schedules including schedules with irregular payments.
Author: John T. Buynak
Maintainer: John T. Buynak <jbuynak94@gmail.com>
Diff between capitalR versions 1.0.0 dated 2019-02-27 and 1.1.0 dated 2019-04-10
capitalR-1.0.0/capitalR/man/pos.Rd |only capitalR-1.1.0/capitalR/DESCRIPTION | 6 +++--- capitalR-1.1.0/capitalR/MD5 | 9 ++++----- capitalR-1.1.0/capitalR/R/capitalR.R | 20 +++----------------- capitalR-1.1.0/capitalR/build/vignette.rds |binary capitalR-1.1.0/capitalR/inst/doc/capitalr.html | 4 ++-- 6 files changed, 12 insertions(+), 27 deletions(-)
Title: Optimal Project Prioritization
Description: A decision support tool for prioritizing conservation projects.
Prioritizations can be developed by maximizing expected feature richness,
expected phylogenetic diversity, the number of features that meet
persistence targets, or identifying a set of projects that meet persistence
targets for minimal cost. Constraints (e.g. lock in specific actions) and
feature weights can also be specified to further customize prioritizations.
After defining a project prioritization problem, solutions can be obtained
using exact algorithms, heuristic algorithms, or random processes. In
particular, it is recommended to install the 'Gurobi' optimizer (available
from <https://www.gurobi.com>) because it can identify optimal solutions
very quickly. Finally, methods are provided for comparing different
prioritizations and evaluating their benefits.
Author: Jeffrey O Hanson [aut, cre],
Richard Schuster [aut],
Matthew Strimas-Mackey [aut],
Joeseph Bennett [aut]
Maintainer: Jeffrey O Hanson <jeffrey.hanson@uqconnect.edu.au>
Diff between oppr versions 0.0.2 dated 2019-03-20 and 0.0.3 dated 2019-04-10
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- NEWS.md | 8 ++++++++ README.md | 4 ++-- inst/doc/oppr.html | 6 +++--- src/Makevars | 6 ------ 6 files changed, 21 insertions(+), 19 deletions(-)
Title: Effect Size and Confidence Interval Calculator
Description: Measure of the Effect ('MOTE') is an effect size calculator, including a
wide variety of effect sizes in the mean differences family (all versions of d) and
the variance overlap family (eta, omega, epsilon, r). 'MOTE' provides non-central
confidence intervals for each effect size, relevant test statistics, and output
for reporting in APA Style (American Psychological Association, 2010,
<ISBN:1433805618>) with 'LaTeX'. In research, an over-reliance on p-values
may conceal the fact that a study is under-powered (Halsey, Curran-Everett,
Vowler, & Drummond, 2015 <doi:10.1038/nmeth.3288>). A test may be statistically
significant, yet practically inconsequential (Fritz, Scherndl, & Kühberger, 2012
<doi:10.1177/0959354312436870>). Although the American Psychological Association
has long advocated for the inclusion of effect sizes (Wilkinson & American
Psychological Association Task Force on Statistical Inference, 1999
<doi:10.1037/0003-066X.54.8.594>), the vast majority of peer-reviewed,
published academic studies stop short of reporting effect sizes and confidence
intervals (Cumming, 2013, <doi:10.1177/0956797613504966>). 'MOTE' simplifies
the use and interpretation of effect sizes and confidence intervals. For more
information, visit <https://www.aggieerin.com/shiny-server>.
Author: Erin M. Buchanan [aut, cre] (<https://orcid.org/0000-0002-9689-4189>),
Amber M Gillenwaters [aut] (<https://orcid.org/0000-0002-7580-3591>),
John E. Scofield [aut] (<https://orcid.org/0000-0001-6345-1181>),
K. D. Valentine [aut] (<https://orcid.org/0000-0001-6349-5395>)
Maintainer: Erin M. Buchanan <buchananlab@gmail.com>
Diff between MOTE versions 1.0.1 dated 2019-03-06 and 1.0.2 dated 2019-04-10
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/d.dep.t.rm.R | 2 +- README.md | 22 ++++++++++++++++++---- 4 files changed, 26 insertions(+), 12 deletions(-)
Title: Synthetic Control Methods with Micro- And Meso-Level Data
Description: A generalization of the 'Synth' package that is designed
for data at a more granular level (e.g., micro-level). Provides
functions to construct weights (including propensity score-type
weights) and run analyses for synthetic control methods with
micro- and meso-level data; see Robbins, Saunders, and Kilmer
(2017) <doi:10.1080/01621459.2016.1213634>.
Author: Michael Robbins [aut, cre],
Steven Davenport [aut]
Maintainer: Michael Robbins <mrobbins@rand.org>
Diff between microsynth versions 1.0.9 dated 2018-05-16 and 2.0.13 dated 2019-04-10
microsynth-1.0.9/microsynth/inst/extdata/sea2-min.png |only microsynth-1.0.9/microsynth/inst/extdata/sea2micro.rds |only microsynth-1.0.9/microsynth/inst/extdata/sea3a-min.png |only microsynth-1.0.9/microsynth/inst/extdata/sea3b-min.png |only microsynth-1.0.9/microsynth/inst/extdata/sea3c-min.png |only microsynth-1.0.9/microsynth/inst/extdata/sea3micro.rds |only microsynth-1.0.9/microsynth/inst/extdata/sea4a-min.png |only microsynth-1.0.9/microsynth/inst/extdata/sea4b-min.png |only microsynth-1.0.9/microsynth/inst/extdata/sea4c-min.png |only microsynth-1.0.9/microsynth/inst/extdata/sea4micro.rds |only microsynth-1.0.9/microsynth/inst/extdata/sea5micro.rds |only microsynth-1.0.9/microsynth/inst/extdata/sea6c-min.png |only microsynth-1.0.9/microsynth/inst/extdata/sea7micro.rds |only microsynth-1.0.9/microsynth/inst/extdata/sea8-min.png |only microsynth-1.0.9/microsynth/inst/extdata/sea8micro.rds |only microsynth-1.0.9/microsynth/inst/extdata/sea9micro.rds |only microsynth-2.0.13/microsynth/DESCRIPTION | 10 microsynth-2.0.13/microsynth/MD5 | 56 microsynth-2.0.13/microsynth/NAMESPACE | 2 microsynth-2.0.13/microsynth/NEWS.md |only microsynth-2.0.13/microsynth/R/microsynth-class.R | 28 microsynth-2.0.13/microsynth/R/microsynth.R | 2070 +--------- microsynth-2.0.13/microsynth/R/miscellaneous.R | 85 microsynth-2.0.13/microsynth/R/plot_microsynth.R |only microsynth-2.0.13/microsynth/R/results.r |only microsynth-2.0.13/microsynth/R/weights.R |only microsynth-2.0.13/microsynth/README.md |only microsynth-2.0.13/microsynth/build/vignette.rds |binary microsynth-2.0.13/microsynth/inst/doc/aggregating_variables_over_time.html | 201 microsynth-2.0.13/microsynth/inst/doc/ensuring_model_feasibility.html | 213 - microsynth-2.0.13/microsynth/inst/doc/introduction.R | 175 microsynth-2.0.13/microsynth/inst/doc/introduction.Rmd | 286 - microsynth-2.0.13/microsynth/inst/doc/introduction.html | 956 +--- microsynth-2.0.13/microsynth/inst/extdata/sea2.rds |only microsynth-2.0.13/microsynth/inst/extdata/sea3.rds |only microsynth-2.0.13/microsynth/inst/extdata/sea4.rds |only microsynth-2.0.13/microsynth/inst/extdata/sea6.rds |only microsynth-2.0.13/microsynth/inst/extdata/sea8.rds |only microsynth-2.0.13/microsynth/inst/extdata/sea9.rds |only microsynth-2.0.13/microsynth/man/microsynth.Rd | 233 - microsynth-2.0.13/microsynth/man/plot_microsynth.Rd |only microsynth-2.0.13/microsynth/man/print.microsynth.Rd | 5 microsynth-2.0.13/microsynth/vignettes/introduction.Rmd | 286 - 43 files changed, 1319 insertions(+), 3287 deletions(-)
Title: NASA POWER API Client
Description: Client for 'NASA' 'POWER' global meteorology, surface solar
energy and climatology data 'API'. 'POWER' (Prediction Of Worldwide Energy
Resource) data are freely available global meteorology and surface solar
energy climatology data for download with a resolution of 1/2 by 1/2 arc
degree longitude and latitude and are funded through the 'NASA' Earth
Science Directorate Applied Science Program. For more on the data
themselves, a web-based data viewer and web access, please see
<https://power.larc.nasa.gov/>.
Author: Adam H. Sparks [aut, cre] (<https://orcid.org/0000-0002-0061-8359>),
Scott Chamberlain [rev] (<https://orcid.org/0000-0003-1444-9135>),
Hazel Kavili [rev],
Alison Boyer [rev]
Maintainer: Adam H. Sparks <adamhsparks@gmail.com>
Diff between nasapower versions 1.0.7 dated 2019-02-17 and 1.1.0 dated 2019-04-10
nasapower-1.0.7/nasapower/man/print.POWER.Info.Rd |only nasapower-1.1.0/nasapower/DESCRIPTION | 6 nasapower-1.1.0/nasapower/MD5 | 35 - nasapower-1.1.0/nasapower/NEWS.md | 23 nasapower-1.1.0/nasapower/R/create_icasa.R | 84 +- nasapower-1.1.0/nasapower/R/create_met.R | 113 +-- nasapower-1.1.0/nasapower/R/get_power.R | 114 ++- nasapower-1.1.0/nasapower/R/internal_functions.R | 123 ++- nasapower-1.1.0/nasapower/README.md | 3 nasapower-1.1.0/nasapower/build/vignette.rds |binary nasapower-1.1.0/nasapower/data/parameters.rda |binary nasapower-1.1.0/nasapower/inst/CITATION | 2 nasapower-1.1.0/nasapower/inst/doc/nasapower.html | 5 nasapower-1.1.0/nasapower/man/create_met.Rd | 2 nasapower-1.1.0/nasapower/man/get_power.Rd | 44 - nasapower-1.1.0/nasapower/tests/testthat/test-create_icasa.R | 46 + nasapower-1.1.0/nasapower/tests/testthat/test-create_met.R | 43 + nasapower-1.1.0/nasapower/tests/testthat/test-get_power.R | 33 nasapower-1.1.0/nasapower/tests/testthat/test-internal_functions.R | 346 +++++++--- 19 files changed, 733 insertions(+), 289 deletions(-)
Title: R Interface to the 'Deutsche Nationalbibliothek (German National
Library) API'
Description: A wrapper for the 'Deutsche Nationalbibliothek (German National
Library) API', available at <http://www.dnb.de>. The German National Library is
the German central archival library, collecting, archiving, bibliographically
classifying all German and German-language publications, foreign
publications about Germany, translations of German works, and the works of
German-speaking emigrants published abroad between 1933 and 1945. A personal
access token is required for usage.
Author: Christian Graul [aut, cre]
Maintainer: Christian Graul <christian.graul@gmail.com>
Diff between rdnb versions 0.1-2 dated 2018-09-15 and 0.1-3 dated 2019-04-10
DESCRIPTION | 12 +++--- MD5 | 28 +++++++-------- NAMESPACE | 1 R/gets.R | 11 +++--- R/rdnb.R | 1 R/utils.R | 93 +++++++++++++++++++++++++++------------------------- inst/CITATION | 6 +-- inst/NEWS | 5 ++ man/changes.Rd | 1 man/dnb_advanced.Rd | 1 man/dnb_search.Rd | 1 man/n_rec.Rd | 1 man/print_query.Rd | 1 man/rdnb.Rd | 2 - man/save_token.Rd | 1 15 files changed, 87 insertions(+), 78 deletions(-)
Title: Create Interactive Web Graphics via 'plotly.js'
Description: Create interactive web graphics from 'ggplot2' graphs and/or a custom interface to the (MIT-licensed) JavaScript library 'plotly.js' inspired by the grammar of graphics.
Author: Carson Sievert [aut, cre] (<https://orcid.org/0000-0002-4958-2844>),
Chris Parmer [aut],
Toby Hocking [aut],
Scott Chamberlain [aut],
Karthik Ram [aut],
Marianne Corvellec [aut] (<https://orcid.org/0000-0002-1994-3581>),
Pedro Despouy [aut],
Plotly Technologies Inc. [cph]
Maintainer: Carson Sievert <cpsievert1@gmail.com>
Diff between plotly versions 4.8.0 dated 2018-07-20 and 4.9.0 dated 2019-04-10
plotly-4.8.0/plotly/R/modeBarButtons.R |only plotly-4.8.0/plotly/inst/build-push-comment.R |only plotly-4.8.0/plotly/inst/examples/shiny/basic/app.R |only plotly-4.9.0/plotly/DESCRIPTION | 33 plotly-4.9.0/plotly/MD5 | 573 ++++++++-- plotly-4.9.0/plotly/NAMESPACE | 8 plotly-4.9.0/plotly/NEWS.md | 62 + plotly-4.9.0/plotly/R/add.R | 5 plotly-4.9.0/plotly/R/ggplotly.R | 31 plotly-4.9.0/plotly/R/highlight.R | 17 plotly-4.9.0/plotly/R/imports.R | 6 plotly-4.9.0/plotly/R/layers2traces.R | 15 plotly-4.9.0/plotly/R/layout.R | 25 plotly-4.9.0/plotly/R/mathjax.R | 3 plotly-4.9.0/plotly/R/orca.R | 196 +++ plotly-4.9.0/plotly/R/partial_bundles.R | 6 plotly-4.9.0/plotly/R/plotly.R | 35 plotly-4.9.0/plotly/R/plotly_build.R | 76 - plotly-4.9.0/plotly/R/plotly_example.R | 14 plotly-4.9.0/plotly/R/proxy.R | 4 plotly-4.9.0/plotly/R/shiny.R | 198 +++ plotly-4.9.0/plotly/R/style.R | 66 - plotly-4.9.0/plotly/R/subplots.R | 53 plotly-4.9.0/plotly/R/sysdata.rda |binary plotly-4.9.0/plotly/R/utils.R | 114 + plotly-4.9.0/plotly/README.md | 91 - plotly-4.9.0/plotly/demo/crosstalk-highlight-binned-target-a.R | 2 plotly-4.9.0/plotly/demo/crosstalk-highlight-leaflet.R | 2 plotly-4.9.0/plotly/demo/ternary.R | 2 plotly-4.9.0/plotly/inst/CITATION | 4 plotly-4.9.0/plotly/inst/docker |only plotly-4.9.0/plotly/inst/examples/shiny/Diamonds/server.R | 2 plotly-4.9.0/plotly/inst/examples/shiny/crossfilter |only plotly-4.9.0/plotly/inst/examples/shiny/crossfilter_compare |only plotly-4.9.0/plotly/inst/examples/shiny/crossfilter_kde |only plotly-4.9.0/plotly/inst/examples/shiny/crossfilter_scatter |only plotly-4.9.0/plotly/inst/examples/shiny/drag_brush |only plotly-4.9.0/plotly/inst/examples/shiny/drag_lines |only plotly-4.9.0/plotly/inst/examples/shiny/drag_markers |only plotly-4.9.0/plotly/inst/examples/shiny/drill_down |only plotly-4.9.0/plotly/inst/examples/shiny/event_data/app.R | 35 plotly-4.9.0/plotly/inst/examples/shiny/event_data/tests |only plotly-4.9.0/plotly/inst/examples/shiny/event_data_3D/app.R | 32 plotly-4.9.0/plotly/inst/examples/shiny/event_data_annotation |only plotly-4.9.0/plotly/inst/examples/shiny/event_data_click/app.R | 51 plotly-4.9.0/plotly/inst/examples/shiny/event_data_click_map/app.R | 3 plotly-4.9.0/plotly/inst/examples/shiny/event_data_legends |only plotly-4.9.0/plotly/inst/examples/shiny/event_data_parcoords |only plotly-4.9.0/plotly/inst/examples/shiny/event_data_persist/app.R | 47 plotly-4.9.0/plotly/inst/examples/shiny/event_priority |only plotly-4.9.0/plotly/inst/examples/shiny/lmGadget/app.R | 56 plotly-4.9.0/plotly/inst/examples/shiny/proxy_relayout/app.R | 2 plotly-4.9.0/plotly/inst/examples/shiny/stream |only plotly-4.9.0/plotly/inst/htmlwidgets/lib/plotlyjs/LICENSE | 2 plotly-4.9.0/plotly/inst/htmlwidgets/lib/plotlyjs/locales/cy.js |only plotly-4.9.0/plotly/inst/htmlwidgets/lib/plotlyjs/locales/fi.js | 2 plotly-4.9.0/plotly/inst/htmlwidgets/lib/plotlyjs/locales/pl.js | 2 plotly-4.9.0/plotly/inst/htmlwidgets/lib/plotlyjs/plotly-latest.min.js | 6 plotly-4.9.0/plotly/inst/htmlwidgets/plotly.js | 178 +-- plotly-4.9.0/plotly/inst/plotlyjs.R | 2 plotly-4.9.0/plotly/man/add_trace.Rd | 15 plotly-4.9.0/plotly/man/api.Rd | 4 plotly-4.9.0/plotly/man/config.Rd | 6 plotly-4.9.0/plotly/man/event_data.Rd | 33 plotly-4.9.0/plotly/man/event_register.Rd |only plotly-4.9.0/plotly/man/event_unregister.Rd |only plotly-4.9.0/plotly/man/highlight.Rd | 10 plotly-4.9.0/plotly/man/orca.Rd | 85 + plotly-4.9.0/plotly/man/plot_dendro.Rd | 3 plotly-4.9.0/plotly/man/plot_ly.Rd | 12 plotly-4.9.0/plotly/man/plotly-shiny.Rd | 7 plotly-4.9.0/plotly/man/plotly_IMAGE.Rd | 4 plotly-4.9.0/plotly/man/plotly_example.Rd | 5 plotly-4.9.0/plotly/man/plotly_json.Rd | 3 plotly-4.9.0/plotly/man/style.Rd | 27 plotly-4.9.0/plotly/man/subplot.Rd | 6 plotly-4.9.0/plotly/tests/figs |only plotly-4.9.0/plotly/tests/testthat.R | 187 --- plotly-4.9.0/plotly/tests/testthat/helper-skip.R |only plotly-4.9.0/plotly/tests/testthat/helper-vdiffr.R |only plotly-4.9.0/plotly/tests/testthat/test-animate-highlight.R | 13 plotly-4.9.0/plotly/tests/testthat/test-api.R | 50 plotly-4.9.0/plotly/tests/testthat/test-cookbook-axes.R | 8 plotly-4.9.0/plotly/tests/testthat/test-cookbook-lines.R | 2 plotly-4.9.0/plotly/tests/testthat/test-cookbook-scatterplots.R | 142 +- plotly-4.9.0/plotly/tests/testthat/test-ggplot-abline.R | 2 plotly-4.9.0/plotly/tests/testthat/test-ggplot-annotation_.R | 18 plotly-4.9.0/plotly/tests/testthat/test-ggplot-area.R | 2 plotly-4.9.0/plotly/tests/testthat/test-ggplot-bar.R | 2 plotly-4.9.0/plotly/tests/testthat/test-ggplot-boxplot.R | 8 plotly-4.9.0/plotly/tests/testthat/test-ggplot-col.R | 2 plotly-4.9.0/plotly/tests/testthat/test-ggplot-contour.R | 2 plotly-4.9.0/plotly/tests/testthat/test-ggplot-date.R | 6 plotly-4.9.0/plotly/tests/testthat/test-ggplot-density.R | 2 plotly-4.9.0/plotly/tests/testthat/test-ggplot-density2d.R | 4 plotly-4.9.0/plotly/tests/testthat/test-ggplot-errorbar-horizontal.R | 2 plotly-4.9.0/plotly/tests/testthat/test-ggplot-errorbar.R | 4 plotly-4.9.0/plotly/tests/testthat/test-ggplot-facets.R | 26 plotly-4.9.0/plotly/tests/testthat/test-ggplot-heatmap.R | 6 plotly-4.9.0/plotly/tests/testthat/test-ggplot-hex.R | 6 plotly-4.9.0/plotly/tests/testthat/test-ggplot-histogram.R | 2 plotly-4.9.0/plotly/tests/testthat/test-ggplot-hline.R | 6 plotly-4.9.0/plotly/tests/testthat/test-ggplot-jitter.R | 2 plotly-4.9.0/plotly/tests/testthat/test-ggplot-labels.R | 27 plotly-4.9.0/plotly/tests/testthat/test-ggplot-legend.R | 4 plotly-4.9.0/plotly/tests/testthat/test-ggplot-lines.R | 4 plotly-4.9.0/plotly/tests/testthat/test-ggplot-map.R | 20 plotly-4.9.0/plotly/tests/testthat/test-ggplot-path.R | 10 plotly-4.9.0/plotly/tests/testthat/test-ggplot-point.R | 18 plotly-4.9.0/plotly/tests/testthat/test-ggplot-polygons.R | 6 plotly-4.9.0/plotly/tests/testthat/test-ggplot-rect.R | 2 plotly-4.9.0/plotly/tests/testthat/test-ggplot-ribbon.R | 2 plotly-4.9.0/plotly/tests/testthat/test-ggplot-segment.R | 4 plotly-4.9.0/plotly/tests/testthat/test-ggplot-sf.R | 22 plotly-4.9.0/plotly/tests/testthat/test-ggplot-size.R | 4 plotly-4.9.0/plotly/tests/testthat/test-ggplot-smooth.R | 2 plotly-4.9.0/plotly/tests/testthat/test-ggplot-step.R | 8 plotly-4.9.0/plotly/tests/testthat/test-ggplot-text.R | 4 plotly-4.9.0/plotly/tests/testthat/test-ggplot-theme.R | 14 plotly-4.9.0/plotly/tests/testthat/test-ggplot-ticks.R | 2 plotly-4.9.0/plotly/tests/testthat/test-ggplot-tooltip.R | 10 plotly-4.9.0/plotly/tests/testthat/test-ggplot-violin.R | 4 plotly-4.9.0/plotly/tests/testthat/test-ggplot-vline.R | 4 plotly-4.9.0/plotly/tests/testthat/test-ggplot-ylim.R | 2 plotly-4.9.0/plotly/tests/testthat/test-mean-error-bars.R | 10 plotly-4.9.0/plotly/tests/testthat/test-plotly-color.R | 13 plotly-4.9.0/plotly/tests/testthat/test-plotly-colorbar.R | 2 plotly-4.9.0/plotly/tests/testthat/test-plotly-colorscale.R |only plotly-4.9.0/plotly/tests/testthat/test-plotly-customdata.R |only plotly-4.9.0/plotly/tests/testthat/test-plotly-group.R | 21 plotly-4.9.0/plotly/tests/testthat/test-plotly-isosurface.R |only plotly-4.9.0/plotly/tests/testthat/test-plotly-linetype.R | 2 plotly-4.9.0/plotly/tests/testthat/test-plotly-partial-bundles.R | 1 plotly-4.9.0/plotly/tests/testthat/test-plotly-sf.R | 20 plotly-4.9.0/plotly/tests/testthat/test-plotly-shiny.R |only plotly-4.9.0/plotly/tests/testthat/test-plotly-size.R | 11 plotly-4.9.0/plotly/tests/testthat/test-plotly-subplot.R | 313 +++++ plotly-4.9.0/plotly/tests/testthat/test-plotly-sunburst.R |only plotly-4.9.0/plotly/tests/testthat/test-plotly-symbol.R | 2 plotly-4.9.0/plotly/tests/testthat/test-plotly-waterfall.R |only plotly-4.9.0/plotly/tests/testthat/test-plotly.R | 35 plotly-4.9.0/plotly/tests/testthat/test-style.R |only 142 files changed, 2345 insertions(+), 1043 deletions(-)
Title: Interactive Visualization and Mapping of Chromosomes
Description: Provides interactive, configurable and elegant graphics visualization of the chromosomes or chromosome regions
of any living organism allowing users to map chromosome elements (like genes, SNPs etc.) on the chromosome plot. It introduces
a special plot viz. the "chromosome heatmap" that, in addition to mapping elements, can visualize the data
associated with chromosome elements (like gene expression) in the form of heat colors which can be highly
advantageous in the scientific interpretations and research work. Because of the large size of the chromosomes,
it is impractical to visualize each element on the same plot. However, the plot provides a magnified view for each
of chromosome locus to render additional information and visualization specific for that location. You can map
thousands of genes and can view all mappings easily. Users can investigate the detailed information about the mappings
(like gene names or total genes mapped on a location) or can view the magnified single or double stranded view of the
chromosome at a location showing each mapped element in sequential order. The package provide multiple features
like visualizing multiple sets, chromosome heat-maps, group annotations, adding hyperlinks, and labelling.
The plots can be saved as HTML documents that can be customized and shared easily. In addition, you can include them in R Markdown or in R 'Shiny' applications.
Author: Lakshay Anand [aut, cre]
Maintainer: Lakshay Anand <lakshayanand15@gmail.com>
Diff between chromoMap versions 0.1 dated 2018-05-15 and 0.2 dated 2019-04-10
chromoMap-0.1/chromoMap/R/chromoMapToHTML.R |only chromoMap-0.1/chromoMap/R/data.R |only chromoMap-0.1/chromoMap/data |only chromoMap-0.1/chromoMap/man/chromoMapToHTML.Rd |only chromoMap-0.1/chromoMap/man/pancandata.Rd |only chromoMap-0.1/chromoMap/vignettes/images/anno.png |only chromoMap-0.1/chromoMap/vignettes/images/annoTip.png |only chromoMap-0.1/chromoMap/vignettes/images/annocolor.png |only chromoMap-0.1/chromoMap/vignettes/images/bgcol.png |only chromoMap-0.1/chromoMap/vignettes/images/border.png |only chromoMap-0.1/chromoMap/vignettes/images/chromoCol.png |only chromoMap-0.1/chromoMap/vignettes/images/heatDouble.png |only chromoMap-0.1/chromoMap/vignettes/images/heatDoubleTip.png |only chromoMap-0.1/chromoMap/vignettes/images/heatSingle.png |only chromoMap-0.1/chromoMap/vignettes/images/heatSingleTip.png |only chromoMap-0.1/chromoMap/vignettes/images/horizontal.png |only chromoMap-0.1/chromoMap/vignettes/images/wiredchrom.png |only chromoMap-0.2/chromoMap/DESCRIPTION | 33 chromoMap-0.2/chromoMap/LICENSE | 2 chromoMap-0.2/chromoMap/MD5 | 53 chromoMap-0.2/chromoMap/NAMESPACE | 4 chromoMap-0.2/chromoMap/R/chromoMap.R | 747 chromoMap-0.2/chromoMap/build/vignette.rds |binary chromoMap-0.2/chromoMap/inst/doc/chromoMap.R | 158 chromoMap-0.2/chromoMap/inst/doc/chromoMap.Rmd | 441 chromoMap-0.2/chromoMap/inst/doc/chromoMap.html | 596 chromoMap-0.2/chromoMap/inst/htmlwidgets/chromoMap.js | 60 chromoMap-0.2/chromoMap/inst/htmlwidgets/chromoMap.yaml | 7 chromoMap-0.2/chromoMap/inst/htmlwidgets/lib/chromoMap-1.0/chromoMap-1.0.js | 8156 +--------- chromoMap-0.2/chromoMap/man/chromoMap.Rd | 122 chromoMap-0.2/chromoMap/vignettes/chromoMap.Rmd | 441 chromoMap-0.2/chromoMap/vignettes/images/P4.jpeg |only chromoMap-0.2/chromoMap/vignettes/images/f1.PNG |only chromoMap-0.2/chromoMap/vignettes/images/f2.PNG |only chromoMap-0.2/chromoMap/vignettes/images/lbl.jpeg |only chromoMap-0.2/chromoMap/vignettes/images/p1.jpeg |only chromoMap-0.2/chromoMap/vignettes/images/p2.PNG |only chromoMap-0.2/chromoMap/vignettes/images/p3.jpeg |only chromoMap-0.2/chromoMap/vignettes/images/p5.jpeg |only chromoMap-0.2/chromoMap/vignettes/images/p6.jpeg |only chromoMap-0.2/chromoMap/vignettes/images/p7.PNG |only 41 files changed, 3431 insertions(+), 7389 deletions(-)
Title: Local Principal Curve Methods
Description: Fitting multivariate data patterns with local principal curves, including tools for data compression (projection) and measuring goodness-of-fit; with some additional functions for mean shift clustering.
Author: Jochen Einbeck and Ludger Evers
Maintainer: Jochen Einbeck <jochen.einbeck@durham.ac.uk>
Diff between LPCM versions 0.46-1 dated 2019-02-17 and 0.46-2 dated 2019-04-10
DESCRIPTION | 8 - MD5 | 18 +- R/Rc.R | 196 ++++++++++++++++-------------- R/coverage.r | 6 R/kernels.and.distances.R | 187 ++++++++++++++--------------- R/ms.r | 293 ++++++++++++++++++++++------------------------ man/coverage.Rd | 16 +- man/ms.Rd | 6 man/plot.lpc.Rd | 3 man/print.lpc.Rd | 113 ++++++++--------- 10 files changed, 429 insertions(+), 417 deletions(-)
Title: 'Mica' Data Web Portal Client
Description: 'Mica' is a server application used to create data web portals for
large-scale epidemiological studies or multiple-study consortia. 'Mica' helps
studies to provide scientifically robust data visibility and web presence
without significant information technology effort. 'Mica' provides a
structured description of consortia, studies, annotated and searchable data
dictionaries, and data access request management. This 'Mica' client allows
to perform data extraction for reporting purposes.
Author: Yannick Marcon [aut, cre] (<https://orcid.org/0000-0003-0138-2023>),
OBiBa group [cph]
Maintainer: Yannick Marcon <yannick.marcon@obiba.org>
Diff between micar versions 1.1.0 dated 2019-02-22 and 1.1.1 dated 2019-04-10
DESCRIPTION | 6 MD5 | 20 +- R/mica.R | 2 R/mica.datasets.R | 2 R/mica.networks.R | 2 R/mica.studies.R | 2 R/mica.study.dces.R | 2 R/mica.study.populations.R | 2 build/vignette.rds |binary inst/doc/mica-dar.html | 318 +++++++++++++------------------------------- inst/doc/mica-search.html | 325 ++++++++++++++------------------------------- 11 files changed, 224 insertions(+), 457 deletions(-)
Title: R Package Installation from Remote Repositories, Including
'GitHub'
Description: Download and install R packages stored in 'GitHub',
'BitBucket', or plain 'subversion' or 'git' repositories. This package
provides the 'install_*' functions in 'devtools'.
Indeed most of the code was copied over from 'devtools'.
Author: Jim Hester [aut, cre],
Gábor Csárdi [aut],
Hadley Wickham [aut],
Winston Chang [aut],
RStudio [cph],
Martin Morgan [aut],
Dan Tenenbaum [aut],
Mango Solutions [cph]
Maintainer: Jim Hester <james.hester@rstudio.com>
Diff between remotes versions 2.0.3 dated 2019-04-09 and 2.0.4 dated 2019-04-10
DESCRIPTION | 16 ++++++++-------- MD5 | 19 ++++++++++--------- NEWS.md | 19 +++++++++++++++++++ R/deps.R | 21 +++++++++++---------- R/install-bitbucket.R | 4 ++-- R/install.R | 6 ++---- inst/doc/dependencies.html | 4 ++-- inst/install-github.R | 33 ++++++++++++++++----------------- man/package_deps.Rd | 6 +++--- tests/testthat/test-deps.R | 26 ++++++++++++++++++++++++++ tests/testthat/withremotes |only 11 files changed, 99 insertions(+), 55 deletions(-)
Title: Quantified Risk Assessment Toolkit
Description: An open source risk analysis toolkit based on the OpenFAIR ontology
<https://www2.opengroup.org/ogsys/catalog/C13K> and risk assessment standard
<https://www2.opengroup.org/ogsys/catalog/C13G>. Empowers an organization to
perform a quantifiable, repeatable, and data-driven risk review.
Author: David Severski [aut, cre] (<https://orcid.org/0000-0001-7867-0459>)
Maintainer: David Severski <davidski@deadheaven.com>
Diff between evaluator versions 0.3.2 dated 2019-02-05 and 0.4.0 dated 2019-04-10
evaluator-0.3.2/evaluator/data/capabilities.rda |only evaluator-0.3.2/evaluator/data/domain_summary.rda |only evaluator-0.3.2/evaluator/data/domains.rda |only evaluator-0.3.2/evaluator/data/mappings.rda |only evaluator-0.3.2/evaluator/data/qualitative_scenarios.rda |only evaluator-0.3.2/evaluator/data/quantitative_scenarios.rda |only evaluator-0.3.2/evaluator/data/scenario_summary.rda |only evaluator-0.3.2/evaluator/data/simulation_results.rda |only evaluator-0.3.2/evaluator/inst/rmd/img/evaluator_logo.jpg |only evaluator-0.3.2/evaluator/inst/rmd/img/evaluator_logo_48px.png |only evaluator-0.3.2/evaluator/man/capabilities.Rd |only evaluator-0.3.2/evaluator/man/domain_summary.Rd |only evaluator-0.3.2/evaluator/man/domains.Rd |only evaluator-0.3.2/evaluator/man/generate_scatterplot.Rd |only evaluator-0.3.2/evaluator/man/load_data.Rd |only evaluator-0.3.2/evaluator/man/mappings.Rd |only evaluator-0.3.2/evaluator/man/qualitative_scenarios.Rd |only evaluator-0.3.2/evaluator/man/quantitative_scenarios.Rd |only evaluator-0.3.2/evaluator/man/scenario_summary.Rd |only evaluator-0.3.2/evaluator/man/simulation_results.Rd |only evaluator-0.3.2/evaluator/man/summarize_scenarios.Rd |only evaluator-0.3.2/evaluator/man/summarize_simulations.Rd |only evaluator-0.3.2/evaluator/tests/testthat/test-evaluator.R |only evaluator-0.4.0/evaluator/DESCRIPTION | 23 evaluator-0.4.0/evaluator/MD5 | 236 ++-- evaluator-0.4.0/evaluator/NAMESPACE | 56 + evaluator-0.4.0/evaluator/NEWS.md | 85 + evaluator-0.4.0/evaluator/R/common_graphs.R | 196 +++- evaluator-0.4.0/evaluator/R/create_tidyrisk_skeleton.R |only evaluator-0.4.0/evaluator/R/data.R | 159 ++- evaluator-0.4.0/evaluator/R/encode.R | 71 + evaluator-0.4.0/evaluator/R/evaluator-deprecated.R |only evaluator-0.4.0/evaluator/R/evaluator.R | 2 evaluator-0.4.0/evaluator/R/import.R | 95 + evaluator-0.4.0/evaluator/R/load_data.R | 132 ++ evaluator-0.4.0/evaluator/R/openfair.R | 479 ++++++---- evaluator-0.4.0/evaluator/R/report.R | 42 evaluator-0.4.0/evaluator/R/simulate.R | 142 +- evaluator-0.4.0/evaluator/R/summarize.R | 251 +++-- evaluator-0.4.0/evaluator/R/tidyrisk_factor.R |only evaluator-0.4.0/evaluator/R/tidyrisk_scenario.R |only evaluator-0.4.0/evaluator/R/utils-pipe.R |only evaluator-0.4.0/evaluator/R/utils.R | 48 - evaluator-0.4.0/evaluator/R/validate.R | 5 evaluator-0.4.0/evaluator/README.md | 44 evaluator-0.4.0/evaluator/data/datalist | 16 evaluator-0.4.0/evaluator/data/mc_capabilities.rda |only evaluator-0.4.0/evaluator/data/mc_domain_summary.rda |only evaluator-0.4.0/evaluator/data/mc_domains.rda |only evaluator-0.4.0/evaluator/data/mc_mappings.rda |only evaluator-0.4.0/evaluator/data/mc_qualitative_scenarios.rda |only evaluator-0.4.0/evaluator/data/mc_quantitative_scenarios.rda |only evaluator-0.4.0/evaluator/data/mc_scenario_summary.rda |only evaluator-0.4.0/evaluator/data/mc_simulation_results.rda |only evaluator-0.4.0/evaluator/inst/WORDLIST |only evaluator-0.4.0/evaluator/inst/doc/customization.html | 3 evaluator-0.4.0/evaluator/inst/doc/process.Rmd | 2 evaluator-0.4.0/evaluator/inst/doc/process.html | 7 evaluator-0.4.0/evaluator/inst/doc/usage.R | 21 evaluator-0.4.0/evaluator/inst/doc/usage.Rmd | 32 evaluator-0.4.0/evaluator/inst/doc/usage.html | 42 evaluator-0.4.0/evaluator/inst/explore_scenarios/explore_scenarios.Rmd | 253 ++--- evaluator-0.4.0/evaluator/inst/explore_scenarios/tests |only evaluator-0.4.0/evaluator/inst/extdata/qualitative_mappings.csv | 20 evaluator-0.4.0/evaluator/inst/openfair_example/openfair_example.Rmd | 96 +- evaluator-0.4.0/evaluator/inst/openfair_example/tests/openfair_example-expected/001.json | 131 +- evaluator-0.4.0/evaluator/inst/openfair_example/tests/openfair_example-expected/001.png |binary evaluator-0.4.0/evaluator/inst/openfair_example/tests/openfair_example.R | 8 evaluator-0.4.0/evaluator/inst/rmd/analyze_risk.Rmd | 431 ++++---- evaluator-0.4.0/evaluator/inst/rmd/img/evaluator_hex_48px.png |only evaluator-0.4.0/evaluator/inst/rmd/open-sans-import.html |only evaluator-0.4.0/evaluator/inst/rmd/risk_dashboard.Rmd | 78 - 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evaluator-0.4.0/evaluator/tests/testthat/test-test-tidyrisk-factor.R |only evaluator-0.4.0/evaluator/tests/testthat/test-tidyrisk-scenario.R |only evaluator-0.4.0/evaluator/tests/testthat/test-utils.R | 16 evaluator-0.4.0/evaluator/tests/testthat/test-validate.R | 32 evaluator-0.4.0/evaluator/vignettes/process.Rmd | 2 evaluator-0.4.0/evaluator/vignettes/usage.Rmd | 32 159 files changed, 2524 insertions(+), 1533 deletions(-)
Title: Markov Model for the Online Multi-Channel Attribution Problem
Description: Advertisers use a variety of online marketing channels to reach consumers and they want to know the degree each channel contributes to their marketing success. This is called the online multi-channel attribution problem. This package contains a probabilistic algorithm for the attribution problem. The model uses a k-order Markov representation to identify structural correlations in the customer journey data. The package also contains three heuristic algorithms (first-touch, last-touch and linear-touch approach) for the same problem. The algorithms are implemented in C++.
Author: Davide Altomare, David Loris
Maintainer: Davide Altomare <davide.altomare@gmail.com>
Diff between ChannelAttribution versions 1.15 dated 2019-03-28 and 1.16 dated 2019-04-10
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- man/ChannelAttribution-package.Rd | 4 ++-- src/Makevars | 2 +- 4 files changed, 10 insertions(+), 10 deletions(-)
More information about ChannelAttribution at CRAN
Permanent link
Title: Stemmatological Analysis of Textual Traditions
Description: Explore and analyse the genealogy of textual or musical traditions, from their variants, with various stemmatological methods, mainly the disagreement-based algorithms suggested by Camps and Cafiero (2015) <doi:10.1484/M.LECTIO-EB.5.102565>.
Author: Jean-Baptiste Camps ; Florian Cafiero
Maintainer: Jean-Baptiste Camps <jbcamps@hotmail.com>
Diff between stemmatology versions 0.3.1 dated 2018-05-27 and 0.3.2 dated 2019-04-10
DESCRIPTION | 8 ++++---- MD5 | 18 +++++++++--------- NAMESPACE | 5 +---- R/PCC.conflicts.R | 2 +- R/PCC.equipollent.R | 2 +- R/import.TEIApparatus.R | 2 +- README.md | 14 +++++++++++--- inst/doc/stemmatology.pdf |binary tests/testthat/test-PCC.Exploratory.R | 22 ++++++++++++++++++++++ tests/testthat/test-PCC.R | 13 +++++++++++++ 10 files changed, 63 insertions(+), 23 deletions(-)
Title: Colour Schemes for Archaeological Data Visualization
Description: Colour schemes for archaeological data
visualization. This package provides Paul Tol's colour schemes and
several thematic palettes (geologic timescale, FAO soils, etc.) with
scales for 'ggplot2'.
Author: Nicolas Frerebeau [aut, cre] (<https://orcid.org/0000-0001-5759-4944>),
Brice Lebrun [ctb] (<https://orcid.org/0000-0001-7503-8685>)
Maintainer: Nicolas Frerebeau
<nicolas.frerebeau@u-bordeaux-montaigne.fr>
Diff between khroma versions 1.1.0 dated 2019-02-24 and 1.1.1 dated 2019-04-10
khroma-1.1.0/khroma/R/utilities.R |only khroma-1.1.1/khroma/DESCRIPTION | 47 ++++--- khroma-1.1.1/khroma/MD5 | 50 ++++--- khroma-1.1.1/khroma/NAMESPACE | 1 khroma-1.1.1/khroma/R/colour.R | 56 ++++---- khroma-1.1.1/khroma/R/ggplot2-tol.R | 41 +++--- khroma-1.1.1/khroma/R/ggplot2.R | 79 ++++++------ khroma-1.1.1/khroma/R/khroma.R | 35 ++--- khroma-1.1.1/khroma/README.md | 2 khroma-1.1.1/khroma/inst/examples/ex-palettes.R | 12 - khroma-1.1.1/khroma/inst/examples/ex-science-soil.R | 2 khroma-1.1.1/khroma/inst/examples/ex-science-stratigraphy.R | 5 khroma-1.1.1/khroma/inst/examples/ex-tol-discrete.R | 12 - khroma-1.1.1/khroma/inst/examples/ex-tol-diverging.R | 8 - khroma-1.1.1/khroma/inst/examples/ex-tol-sequential.R | 6 khroma-1.1.1/khroma/inst/examples/tol.R | 11 - khroma-1.1.1/khroma/man/colour.Rd | 13 + khroma-1.1.1/khroma/man/khroma-package.Rd | 34 +++-- khroma-1.1.1/khroma/man/scale_soil.Rd | 2 khroma-1.1.1/khroma/man/scale_stratigraphy.Rd | 5 khroma-1.1.1/khroma/man/scale_tol.Rd | 11 - khroma-1.1.1/khroma/man/scale_tol_discrete.Rd | 12 - khroma-1.1.1/khroma/man/scale_tol_diverging.Rd | 38 +++-- khroma-1.1.1/khroma/man/scale_tol_sequential.Rd | 6 khroma-1.1.1/khroma/tests |only 25 files changed, 279 insertions(+), 209 deletions(-)
Title: Bayesian Whole-Genome Regression
Description: Whole-genome regression methods on Bayesian framework fitted via EM
or Gibbs sampling, with optional kernel term and sampling techniques as described
by Xavier (2017) <doi:10.1186/s12859-017-1582-3>.
Author: Alencar Xavier, William Muir, Shizhong Xu, Katy Rainey.
Maintainer: Alencar Xavier <alenxav@gmail.com>
Diff between bWGR versions 1.6.1 dated 2019-03-11 and 1.6.2 dated 2019-04-10
bWGR-1.6.1/bWGR/src/wgr20190212.cpp |only bWGR-1.6.2/bWGR/DESCRIPTION | 8 - bWGR-1.6.2/bWGR/MD5 | 16 +- bWGR-1.6.2/bWGR/R/RcppExports.R | 250 ++++++++++++++++++------------------ bWGR-1.6.2/bWGR/R/mix.R | 239 ++++++++++++++++++++++++++++++++++ bWGR-1.6.2/bWGR/man/bWGR.Rd | 4 bWGR-1.6.2/bWGR/man/mix.Rd | 2 bWGR-1.6.2/bWGR/man/mvr.Rd | 6 bWGR-1.6.2/bWGR/src/RcppExports.cpp | 45 ++++++ bWGR-1.6.2/bWGR/src/wgr20190410.cpp |only 10 files changed, 433 insertions(+), 137 deletions(-)
Title: Analytic Insurance Rating Techniques
Description: Methods for insurance rating. It provides a data driven strategy for the construction of
insurance tariff classes. This strategy is based on the work by Antonio and Valdez (2012) <doi:10.1007/s10182-011-0152-7>.
The package also adds functionality showing additional lines for the reference
categories in the levels of the coefficients in the output of a generalized linear regression analysis.
In addition it implements a procedure determining the level of a factor with the largest exposure,
and thereafter changing the base level of the factor to this level.
Author: Martin Haringa
Maintainer: Martin Haringa <mtharinga@gmail.com>
Diff between insurancerating versions 0.4.0 dated 2019-02-06 and 0.4.1 dated 2019-04-10
DESCRIPTION | 8 ++++---- MD5 | 13 +++++++------ NAMESPACE | 1 + NEWS.md |only R/fisher.R | 5 +++-- R/rating_factors.R | 16 ++++++++++++---- man/fisher.Rd | 4 +++- man/rating_factors.Rd | 3 ++- 8 files changed, 32 insertions(+), 18 deletions(-)
More information about insurancerating at CRAN
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Title: Reimplementations of Functions Introduced Since R-3.0.0
Description: Functions introduced or changed since R v3.0.0 are re-implemented in this
package. The backports are conditionally exported in order to let R resolve
the function name to either the implemented backport, or the respective base
version, if available. Package developers can make use of new functions or
arguments by selectively importing specific backports to
support older installations.
Author: Michel Lang [cre, aut] (<https://orcid.org/0000-0001-9754-0393>),
R Core Team [aut]
Maintainer: Michel Lang <michellang@gmail.com>
Diff between backports versions 1.1.3 dated 2018-12-14 and 1.1.4 dated 2019-04-10
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS.md | 6 +++++- R/import.R | 2 +- 4 files changed, 12 insertions(+), 8 deletions(-)
Title: Data Correction and Imputation Using Deductive Methods
Description: Attempt to repair inconsistencies and missing values in data
records by using information from valid values and validation rules
restricting the data.
Author: Mark van der Loo [cre, aut],
Edwin de Jonge [aut]
Maintainer: Mark van der Loo <mark.vanderloo@gmail.com>
Diff between deductive versions 0.1.2 dated 2017-06-02 and 0.1.3 dated 2019-04-10
DESCRIPTION | 11 +++++------ MD5 | 12 ++++++------ NEWS | 8 ++++++++ R/linimpute.R | 5 ++++- R/typocorr.R | 2 +- tests/testthat/test_correct_typos.R | 16 ++++++++++++++++ tests/testthat/test_linimpute.R | 10 ++++++++++ 7 files changed, 50 insertions(+), 14 deletions(-)
Title: Thermal Image Analysis
Description: A collection of functions and routines for inputting thermal
image video files, plotting and converting binary raw data into estimates of
temperature. First published 2015-03-26. Written primarily for research purposes
in biological applications of thermal images. v1 included the base calculations
for converting thermal image binary values to temperatures. v2 included additional
equations for providing heat transfer calculations and an import function for thermal
image files (v2.2.3 fixed error importing thermal image to windows OS). v3. Added numerous
functions for converting thermal image, videos, rewriting and exporting.
v3.1. Added new functions to convert files.
Author: Glenn J. Tattersall
Maintainer: Glenn J. Tattersall <gtatters@brocku.ca>
Diff between Thermimage versions 3.1.2 dated 2018-11-05 and 3.1.4 dated 2019-04-10
DESCRIPTION | 10 +++++----- MD5 | 10 +++++----- R/frameLocates.R | 9 ++++++++- man/Thermimage-package.Rd | 6 +++++- man/nameleadzero.Rd | 5 +---- man/thermsumcent.Rd | 4 ---- 6 files changed, 24 insertions(+), 20 deletions(-)
Title: Quickly Explore Your Data Using 'ggplot2' and 'table1' Summary
Tables
Description: Quickly and easily perform exploratory data analysis by uploading your
data as a 'csv' file. Start generating insights using 'ggplot2' plots and
'table1' tables with descriptive stats, all using an easy-to-use point and click
'Shiny' interface.
Author: Samer Mouksassi [aut, cre] (<https://orcid.org/0000-0002-7152-6654>),
Dean Attali [aut],
Benjamin Rich [aut] (provided summary stats tables tab code),
Michael Sachs [aut] (provided ggkm code)
Maintainer: Samer Mouksassi <samermouksassi@gmail.com>
Diff between ggquickeda versions 0.1.2 dated 2019-02-24 and 0.1.3 dated 2019-04-10
DESCRIPTION | 16 MD5 | 39 NEWS.md | 20 R/ggkm.R | 58 R/run_ggquickeda.R | 2 R/sourceable.R | 2 build/vignette.rds |binary inst/doc/AdditionalPlotsStats.Rmd | 2 inst/doc/AdditionalPlotsStats.html | 13 inst/doc/ggquickeda.html | 9 inst/shinyapp/global.R | 75 inst/shinyapp/rsconnect/rstudio.studyexplorer.io |only inst/shinyapp/server.R | 3661 +++++++++++++---------- inst/shinyapp/ui.R | 1436 +++++---- man/geom_km.Rd | 45 man/geom_kmband.Rd | 48 man/geom_kmticks.Rd | 48 man/stat_km.Rd | 37 man/stat_kmband.Rd | 49 man/stat_kmticks.Rd | 35 vignettes/AdditionalPlotsStats.Rmd | 2 21 files changed, 3406 insertions(+), 2191 deletions(-)
Title: Infrastructure for Running, Cycling and Swimming Data from
GPS-Enabled Tracking Devices
Description: Provides infrastructure for handling running, cycling and swimming data from GPS-enabled tracking devices within R. The package provides methods to extract, clean and organise workout and competition data into session-based and unit-aware data objects of class 'trackeRdata' (S3 class). The information can then be visualised, summarised, and analysed through flexible and extensible methods. Frick and Kosmidis (2017) <doi: 10.18637/jss.v082.i07>, which is updated and maintained as one of the vignettes, provides detailed descriptions of the package and its methods, and real-data demonstrations of the package functionality.
Author: Ioannis Kosmidis [aut, cre] (<https://orcid.org/0000-0003-1556-0302>),
Hannah Frick [aut] (<https://orcid.org/0000-0002-6049-5258>),
Robin Hornak [aut]
Maintainer: Ioannis Kosmidis <ioannis.kosmidis@warwick.ac.uk>
Diff between trackeR versions 1.5.0 dated 2019-04-05 and 1.5.1 dated 2019-04-10
DESCRIPTION | 6 MD5 | 27 NAMESPACE | 1 NEWS.md | 15 R/helpers.R | 13 R/reading.R | 3 R/thresholds.R | 6 R/trackeRdata.R | 3 R/trackeRdata_summary.R | 1 build/vignette.rds |binary inst/doc/TourDetrackeR.html | 5409 ++-------------------------------- inst/doc/trackeR.pdf |binary man/change_units.trackeRthresholds.Rd |only man/get_elevation_gain.Rd | 10 man/read_directory.Rd | 30 15 files changed, 461 insertions(+), 5063 deletions(-)
Title: (Permuted) Brunner-Munzel Test
Description: Provides the functions for Brunner-Munzel test and
permuted Brunner-Munzel test,
which enable to use formula, matrix, and table as argument.
These functions are based on Brunner and Munzel (2000)
<doi:10.1002/(SICI)1521-4036(200001)42:1%3C17::AID-BIMJ17%3E3.0.CO;2-U>
and Neubert and Brunner (2007) <doi:10.1016/j.csda.2006.05.024>,
and are written with FORTRAN.
Author: Toshiaki Ara [aut, cre]
Maintainer: Toshiaki Ara <toshiaki.ara@gmail.com>
Diff between brunnermunzel versions 1.3.2 dated 2019-03-28 and 1.3.3 dated 2019-04-10
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NEWS.md | 5 +++++ build/vignette.rds |binary inst/doc/usage.html | 6 +++--- src/bm_test.f | 2 +- 6 files changed, 18 insertions(+), 13 deletions(-)
Title: Block Forests: Random Forests for Blocks of Clinical and Omics
Covariate Data
Description: A random forest variant 'block forest' ('BlockForest') tailored to the
prediction of binary, survival and continuous outcomes using block-structured
covariate data, for example, clinical covariates plus measurements of a certain
omics data type or multi-omics data, that is, data for which measurements of
different types of omics data and/or clinical data for each patient exist. Examples
of different omics data types include gene expression measurements, mutation data
and copy number variation measurements.
Block forest are presented in Hornung & Wright (2018). The package includes four
other random forest variants for multi-omics data: 'RandomBlock', 'BlockVarSel',
'VarProb', and 'SplitWeights'. These were also considered in Hornung & Wright (2018),
but performed worse than block forest in their comparison study based on 20 real
multi-omics data sets. Therefore, we recommend to use block forest ('BlockForest')
in applications. The other random forest variants can, however, be consulted for
academic purposes, for example, in the context of further methodological
developments.
Reference: Hornung, R. & Wright, M. N. (2018) Block Forests: random forests for
blocks of clinical and omics covariate data. Technical Report, Department of
Statistics, University of Munich.
Author: Roman Hornung, Marvin N. Wright
Maintainer: Marvin N. Wright <cran@wrig.de>
Diff between blockForest versions 0.1.7 dated 2018-12-30 and 0.2.0 dated 2019-04-10
DESCRIPTION | 41 ++++++++++-------- MD5 | 35 ++++++++-------- R/CvalueOptimizer.R | 4 + R/CvalueOptimizerClassification.R | 35 +++++++++++----- R/CvalueOptimizerRegression.R | 35 +++++++++++----- R/CvalueOptimizerSurvival.R | 40 +++++++++++++----- R/blockForest.R | 19 +++++++- R/blockfor.R | 83 ++++++++++++++++++++++++++------------ inst/include/blockForest.h | 2 man/blockfor.Rd | 4 + src/Forest.cpp | 6 +- src/Tree.cpp | 20 ++++++--- src/TreeClassification.cpp | 4 - src/TreeProbability.cpp | 4 - tests/testthat/test_blockfor.R |only tests/testthat/test_blockforest.R | 29 +++++++++---- tests/testthat/test_jackknife.R | 32 -------------- tests/testthat/test_quantreg.R | 2 tests/testthat/test_sparse.R | 1 19 files changed, 248 insertions(+), 148 deletions(-)
Title: Utility Functions for Conducting and Reporting Meta-Analysis
Description: Contains functions to estimate the proportion of effects stronger than a threshold
of scientific importance (per Mathur & VanderWeele, 2018 [<https://onlinelibrary.wiley.com/doi/full/10.1002/sim.8057>]),
to make various effect size conversions, to compute and format inference in a meta-analysis, and to scrape results from
existing meta-analyses for re-analysis.
Author: Maya B. Mathur, Tyler J. VanderWeele
Maintainer: Maya B. Mathur <mmathur@stanford.edu>
Diff between MetaUtility versions 1.1.0 dated 2019-03-24 and 1.2.0 dated 2019-04-10
DESCRIPTION | 6 +-- MD5 | 11 +++---- NAMESPACE | 1 R/functions.R | 89 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++-- man/r_to_d.Rd |only man/r_to_z.Rd | 2 - man/z_to_r.Rd | 2 - 7 files changed, 99 insertions(+), 12 deletions(-)
Title: High-Dimensional Penalized Regression
Description: Algorithms for lasso and fused-lasso problems: implementation of
the lars algorithm for lasso and fusion penalization and EM-based
algorithms for (logistic) lasso and fused-lasso penalization.
Author: Quentin Grimonprez [aut, cre],
Serge Iovleff [aut]
Maintainer: Quentin Grimonprez <quentin.grimonprez@inria.fr>
Diff between HDPenReg versions 0.93.2 dated 2018-01-19 and 0.94.6 dated 2019-04-10
DESCRIPTION | 13 MD5 | 112 +-- NEWS | 3 R/EM.R | 19 R/HDPenReg-package.R | 18 R/LarsPath.R | 37 - R/cvEM.R | 8 R/cvlars.R | 16 R/lars.R | 20 R/predict.R | 25 R/simulation.R | 10 build/vignette.rds |binary inst/doc/HDPenReg.R | 3 inst/doc/HDPenReg.Rnw | 31 inst/doc/HDPenReg.pdf |binary man/EMcvfusedlasso.Rd | 3 man/EMcvlasso.Rd | 3 man/EMfusedlasso.Rd | 4 man/EMlasso.Rd | 7 man/HDPenReg-package.Rd | 4 man/HDcvlars.Rd | 5 man/HDfusion.Rd | 7 man/HDlars.Rd | 6 man/coef.LarsPath.Rd | 11 man/coeff.Rd | 7 man/computeCoefficients.Rd | 7 man/plot.HDcvlars.Rd | 5 man/plotCoefficient.Rd | 10 man/predict.LarsPath.Rd | 7 man/simul.Rd | 3 src/EMPenModels.cpp | 4 src/EMPenModels.h | 126 +-- src/HDPenReg/EMCVmain.cpp | 6 src/HDPenReg/EMmain.cpp | 6 src/HDPenReg/Makefile | 5 src/HDPenReg/bin |only src/HDPenReg/lars.mk | 20 src/HDPenReg/lars/Cvlars.cpp | 455 ++++++------- src/HDPenReg/lars/Cvlars.h | 20 src/HDPenReg/lars/Fusion.cpp | 139 +--- src/HDPenReg/lars/Fusion.h | 10 src/HDPenReg/lars/Lars.cpp | 1374 +++++++++++++++++++++------------------- src/HDPenReg/lars/Lars.h | 79 +- src/HDPenReg/lars/Path.cpp | 414 ++++-------- src/HDPenReg/lars/Path.h | 41 - src/HDPenReg/lars/PathState.cpp | 299 ++++---- src/HDPenReg/lars/PathState.h | 13 src/HDPenReg/lars/functions.cpp | 274 +++---- src/HDPenReg/lars/functions.h | 29 src/HDPenReg/larsRmain.cpp | 251 ++++--- src/HDPenReg/larsRmain.h |only src/HDPenReg/lassoModels.mk | 4 src/HDPenReg/lassoModels/CV.h | 2 src/Makevars | 15 src/init.c | 7 src/larsR.cpp | 14 src/larsR.h | 33 vignettes/HDPenReg.Rnw | 31 58 files changed, 2077 insertions(+), 1998 deletions(-)
Title: Temporal Process Regression
Description: Regression models for temporal process responses with
time-varying coefficient.
Author: Jun Yan <jyan@stat.uconn.edu>
Maintainer: Jun Yan <jyan@stat.uconn.edu>
Diff between tpr versions 0.3-1.1 dated 2019-04-09 and 0.3-1.2 dated 2019-04-10
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- NAMESPACE | 5 +++++ inst/include/gee2.h | 5 +++-- inst/include/inter.h | 2 -- inst/include/ordgee.h | 10 ++++------ inst/include/tntsupp.h | 3 +++ src/lgtdl.h | 2 +- 8 files changed, 27 insertions(+), 22 deletions(-)
Title: Markov Random Fields with Additional Covariates
Description: Approximate node interaction parameters of Markov Random Fields
graphical networks. Models can incorporate additional covariates, allowing users to estimate
how interactions between nodes in the graph are predicted to change across
covariate gradients. The general methods implemented in this package are described
in Clark et al. (2018) <doi:10.1002/ecy.2221>.
Author: Nicholas J Clark [aut, cre],
Konstans Wells [aut],
Oscar Lindberg [aut]
Maintainer: Nicholas J Clark <nicholas.j.clark1214@gmail.com>
Diff between MRFcov versions 1.0.36 dated 2018-11-26 and 1.0.37 dated 2019-04-10
DESCRIPTION | 8 - MD5 | 40 ++--- NEWS.md | 6 R/MRFcov.R | 252 ++++++++++++++++++++---------------- R/MRFcov_spatial.R | 63 +++++++-- R/bootstrap_MRF.R | 77 +++++++---- R/cv_MRF_diag.R | 84 ++++++------ R/plotMRF_hm.R | 7 - R/predict_MRF.R | 38 ++++- inst/doc/Bird_Parasite_CRF.R | 8 + inst/doc/Bird_Parasite_CRF.Rmd | 14 +- inst/doc/Bird_Parasite_CRF.html | 80 +++++------ inst/doc/Gaussian_Poisson_CRFs.R | 4 inst/doc/Gaussian_Poisson_CRFs.Rmd | 12 - inst/doc/Gaussian_Poisson_CRFs.html | 48 +++--- man/MRFcov.Rd | 23 +-- man/MRFcov_spatial.Rd | 4 man/bootstrap_MRF.Rd | 17 +- man/plotMRF_hm.Rd | 6 vignettes/Bird_Parasite_CRF.Rmd | 14 +- vignettes/Gaussian_Poisson_CRFs.Rmd | 12 - 21 files changed, 506 insertions(+), 311 deletions(-)
Title: Sparse Arrays and Multivariate Polynomials
Description: Sparse arrays interpreted as multivariate polynomials.
Author: Robin K. S. Hankin [aut, cre] (<https://orcid.org/0000-0001-5982-0415>)
Maintainer: Robin K. S. Hankin <hankin.robin@gmail.com>
Diff between spray versions 1.0-5 dated 2019-03-28 and 1.0-6 dated 2019-04-10
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- R/spray.R | 6 ++---- inst/doc/spray.pdf |binary src/spray_ops.cpp | 11 ++++++----- tests/aaa.R | 5 ++++- 6 files changed, 20 insertions(+), 18 deletions(-)
Title: Meta-Feature Extractor
Description: Extracts meta-features from datasets to support the design of
recommendation systems based on Meta-Learning. The meta-features, also called
characterization measures, are able to characterize the complexity of datasets
and to provide estimates of algorithm performance. The package contains not
only the standard characterization measures, but also more recent
characterization measures. By making available a large set of meta-feature
extraction functions, tasks like comprehensive data characterization, deep
data exploration and large number of Meta-Learning based data analysis can be
performed. These concepts are described in the paper: Fabio Pinto, Carlos
Soares, and Joao Mendes-Moreira. Towards automatic generation of metafeatures.
In Pacific-Asia Conference on Knowledge Discovery and Data Mining (PAKDD),
pages 215 - 226, 2016, <doi:10.1007/978-3-319-31753-3_18>.
Author: Adriano Rivolli [aut, cre],
Luis P. F. Garcia [aut],
Andre C. P. L. F. de Carvalho [ths]
Maintainer: Adriano Rivolli <rivolli@utfpr.edu.br>
Diff between mfe versions 0.1.1 dated 2018-06-29 and 0.1.2 dated 2019-04-10
mfe-0.1.1/mfe/tests/testthat/test_modelbased.R |only mfe-0.1.2/mfe/DESCRIPTION | 12 mfe-0.1.2/mfe/LICENSE | 341 --------------- mfe-0.1.2/mfe/MD5 | 50 +- mfe-0.1.2/mfe/NEWS.md | 13 mfe-0.1.2/mfe/R/general.R | 6 mfe-0.1.2/mfe/R/infotheo.R | 8 mfe-0.1.2/mfe/R/landmarking.R | 12 mfe-0.1.2/mfe/R/metafeatures.R | 6 mfe-0.1.2/mfe/R/model.based.R | 10 mfe-0.1.2/mfe/R/statistical.R | 8 mfe-0.1.2/mfe/README.md | 4 mfe-0.1.2/mfe/build/vignette.rds |binary mfe-0.1.2/mfe/inst/doc/mfe-vignette.html | 515 ++++++++++++++++------- mfe-0.1.2/mfe/man/general.Rd | 5 mfe-0.1.2/mfe/man/infotheo.Rd | 1 mfe-0.1.2/mfe/man/landmarking.Rd | 5 mfe-0.1.2/mfe/man/metafeatures.Rd | 4 mfe-0.1.2/mfe/man/model.based.Rd | 5 mfe-0.1.2/mfe/man/post.processing.Rd | 3 mfe-0.1.2/mfe/man/statistical.Rd | 5 mfe-0.1.2/mfe/tests/testthat/test_general.R | 2 mfe-0.1.2/mfe/tests/testthat/test_infotheo.R | 2 mfe-0.1.2/mfe/tests/testthat/test_landmarking.R | 2 mfe-0.1.2/mfe/tests/testthat/test_metafeatures.R | 2 mfe-0.1.2/mfe/tests/testthat/test_model.based.R |only mfe-0.1.2/mfe/tests/testthat/test_statistical.R | 2 27 files changed, 451 insertions(+), 572 deletions(-)