Title: Estimation Methods for Gravity Models
Description: A wrapper of different standard estimation methods for gravity models.
This package provides estimation methods for log-log models and multiplicative models.
Author: Anna-Lena Woelwer [aut, cph],
Jan Pablo Burgard [aut, cph],
Joshua Kunst [aut, cph],
Mauricio Vargas [aut, cre, cph]
(<https://orcid.org/0000-0003-1017-7574>),
Romain Francois [ctb] (adapted parts of the code to use dplyr 0.8.0),
Lionel Henry [ctb] (simplified parts of the code)
Maintainer: Mauricio Vargas <mvargas@dcc.uchile.cl>
Diff between gravity versions 0.9.0 dated 2018-11-22 and 0.9.7 dated 2019-04-21
DESCRIPTION | 48 +- MD5 | 98 ++-- NAMESPACE | 4 R/bvu.R | 50 -- R/bvw.R | 44 -- R/ddm.R | 46 -- R/discard_unusable.R |only R/ek_tobit.R | 52 +- R/et_tobit.R | 40 - R/fixed_effects.R | 38 - R/gpml.R | 53 +- R/gravity_package.R | 6 R/hm_summary.R | 14 R/log_distance.R |only R/nbpml.R | 53 +- R/nls.R | 53 -- R/ols.R | 34 - R/ppml.R | 53 +- R/sils.R | 32 - R/tetrads.R | 93 ++-- R/tobit.R | 34 - build/partial.rdb |binary build/vignette.rds |binary data/gravity_no_zeros.rdata |binary data/gravity_zeros.rdata |binary inst/doc/crash-course-on-gravity-models.R | 74 +++ inst/doc/crash-course-on-gravity-models.Rmd | 118 +++++ inst/doc/crash-course-on-gravity-models.html | 575 +++++++++++++++++++++------ inst/doc/creating-gravity-datasets.R | 12 inst/doc/creating-gravity-datasets.Rmd | 12 inst/doc/creating-gravity-datasets.html | 397 ++++++++++++++---- man/bvu.Rd | 15 man/bvw.Rd | 15 man/ddm.Rd | 13 man/discard_unusable.Rd |only man/ek_tobit.Rd | 13 man/et_tobit.Rd | 11 man/fixed_effects.Rd | 13 man/gpml.Rd | 10 man/hm_summary.Rd | 5 man/log_distance.Rd |only man/nbpml.Rd | 12 man/nls.Rd | 16 man/ols.Rd | 9 man/ppml.Rd | 12 man/sils.Rd | 13 man/tetrads.Rd | 15 man/tobit.Rd | 7 tests/testthat/test-hm_summary.R | 6 tests/testthat/test-nbpml.R | 1 vignettes/crash-course-on-gravity-models.Rmd | 118 +++++ vignettes/creating-gravity-datasets.Rmd | 12 52 files changed, 1553 insertions(+), 796 deletions(-)
Title: Open Trade Statistics API Wrapper and Utility Program
Description: Access 'Open Trade Statistics' API from R to download international trade data.
Author: Mauricio Vargas [aut, cre, cph]
(<https://orcid.org/0000-0003-1017-7574>),
Joshua Kunst [ctb] (contributed to different parts of the pre-release
code),
Emily Riederer [rev] (reviewed the package for rOpenSci, see
https://github.com/ropensci/onboarding/issues/274),
Mark Padgham [rev] (reviewed the package for rOpenSci, see
https://github.com/ropensci/onboarding/issues/274),
Amanda Dobbyn [rev] (reviewed an archived package that evolved into the
current package for rOpenSci, see
https://github.com/ropensci/onboarding/issues/217),
Jorge Cimentada [rev] (reviewed an archived package that evolved into
the current package for rOpenSci, see
https://github.com/ropensci/onboarding/issues/217),
UN Comtrade [dtc],
Center for International Development at Harvard University [dtc],
The Observatory of Economic Complexity [dtc]
Maintainer: Mauricio Vargas <mvargas@dcc.uchile.cl>
Diff between tradestatistics versions 0.1 dated 2019-04-06 and 0.2 dated 2019-04-21
tradestatistics-0.1/tradestatistics/inst/REFERENCES.bib |only tradestatistics-0.1/tradestatistics/inst/paper.md |only tradestatistics-0.2/tradestatistics/DESCRIPTION | 46 tradestatistics-0.2/tradestatistics/MD5 | 46 tradestatistics-0.2/tradestatistics/NAMESPACE | 1 tradestatistics-0.2/tradestatistics/R/ots_country_code.R | 15 tradestatistics-0.2/tradestatistics/R/ots_create_tidy_data.R | 77 - tradestatistics-0.2/tradestatistics/build/vignette.rds |binary tradestatistics-0.2/tradestatistics/data/ots_attributes_communities.rda |binary tradestatistics-0.2/tradestatistics/data/ots_attributes_countries.rda |binary tradestatistics-0.2/tradestatistics/data/ots_attributes_product_shortnames.rda |binary tradestatistics-0.2/tradestatistics/data/ots_attributes_products.rda |binary tradestatistics-0.2/tradestatistics/data/ots_attributes_tables.rda |binary tradestatistics-0.2/tradestatistics/inst/doc/basic-usage.R | 48 tradestatistics-0.2/tradestatistics/inst/doc/basic-usage.Rmd | 97 - tradestatistics-0.2/tradestatistics/inst/doc/basic-usage.html | 604 +++------- tradestatistics-0.2/tradestatistics/inst/doc/creating-datasets.R | 20 tradestatistics-0.2/tradestatistics/inst/doc/creating-datasets.Rmd | 20 tradestatistics-0.2/tradestatistics/inst/doc/creating-datasets.html | 44 tradestatistics-0.2/tradestatistics/man/tradestatistics-package.Rd | 14 tradestatistics-0.2/tradestatistics/tests/testthat/test-ots_country_code.R | 7 tradestatistics-0.2/tradestatistics/tests/testthat/test-ots_create_tidy_data.R | 2 tradestatistics-0.2/tradestatistics/tests/testthat/test-ots_product_code.R | 56 tradestatistics-0.2/tradestatistics/vignettes/basic-usage.Rmd | 97 - tradestatistics-0.2/tradestatistics/vignettes/creating-datasets.Rmd | 20 25 files changed, 566 insertions(+), 648 deletions(-)
More information about tradestatistics at CRAN
Permanent link
Title: Computes Proximity in Large Sparse Matrices
Description: Computes proximity between rows or columns of large matrices efficiently in C++.
Functions are optimised for large sparse matrices using the Armadillo and Intel TBB libraries.
Among several built-in similarity/distance measures, computation of correlation,
cosine similarity and Euclidean distance is particularly fast.
Author: Kohei Watanabe [cre, aut, cph]
(<https://orcid.org/0000-0001-6519-5265>),
Robrecht Cannoodt [aut] (<https://orcid.org/0000-0003-3641-729X>)
Maintainer: Kohei Watanabe <watanabe.kohei@gmail.com>
Diff between proxyC versions 0.1.2 dated 2019-04-19 and 0.1.3 dated 2019-04-21
DESCRIPTION | 16 +++++++----- MD5 | 10 +++---- NEWS.md | 8 ++++-- tests/testthat/test-dist.R | 36 ++++++++++++++-------------- tests/testthat/test-proxy.R | 56 ++++++++++++++++++++++---------------------- tests/testthat/test-simil.R | 38 ++++++++++++++--------------- 6 files changed, 86 insertions(+), 78 deletions(-)
Title: Input Output Analysis
Description: Calculates fundamental IO matrices (Leontief, Wassily W. (1951) <doi:10.1038/scientificamerican1051-15>, Ghosh, A. (1958) <doi:10.2307/2550694>); within period analysis via various rankings and coefficients (Sonis and Hewings (2006) <doi:10.1080/09535319200000013>, Blair and Miller (2009) <ISBN:978-0-521-73902-3>, Antras et al (2012) <doi:10.3386/w17819>, Hummels, Ishii, and Yi (2001) <doi:10.1016/S0022-1996(00)00093-3>); across period analysis with impact analysis (Dietzenbacher, van der Linden, and Steenge (2006) <doi:10.1080/09535319300000017>, Sonis, Hewings, and Guo (2006) <doi:10.1080/09535319600000002>); and a variety of table operators.
Author: John Wade [aut, cre],
Ignacio Sarmiento-Barbieri [aut]
Maintainer: John Wade <jjpwade2@illinois.edu>
Diff between ioanalysis versions 0.1.1 dated 2019-03-10 and 0.1.3 dated 2019-04-21
DESCRIPTION | 6 ++-- MD5 | 36 ++++++++++++------------ R/agg.region.R | 69 +++++++++++++++++++++++++++++------------------ R/agg.sector.R | 24 +++++----------- R/as.inputoutput.R | 10 ++---- R/easy.select.R | 6 ++-- R/export.total.R | 6 ++-- R/f.influence.R | 16 +++++----- R/ghosh.inv.R | 2 - R/inverse.important.R | 2 - R/key.sector.R | 6 ++++ R/multipliers.R | 12 ++++---- R/output.decomposition.R | 2 - R/vs.R | 11 ++++--- data/toy.IO.rda |binary data/toy.IO2.rda |binary man/f.influence.Rd | 10 ++---- man/key.sector.Rd | 13 ++------ man/multipliers.Rd | 6 ++-- 19 files changed, 122 insertions(+), 115 deletions(-)
Title: Linear and Nonlinear Methods for Analyzing Daily and Monthly
Dendroclimatological Data
Description: Provides novel dendroclimatological methods, primarily used by the
Tree-ring research community. There are four core functions. The first one is
daily_response(), which finds the optimal sequence of days that are related
to one or more tree-ring proxy records. Similar function is daily_response_seasorr(),
which implements partial correlations in the analysis of daily response functions.
For the enthusiast of monthly data, there is monthly_response() function.
The last core function is compare_methods(), which effectively compares several
linear and nonlinear regression algorithms on the task of climate reconstruction.
Author: Jernej Jevsenak [aut, cre]
Maintainer: Jernej Jevsenak <jernej.jevsenak@gmail.com>
Diff between dendroTools versions 1.0.3 dated 2019-03-28 and 1.0.4 dated 2019-04-21
DESCRIPTION | 17 ++++---- MD5 | 49 +++++++++++++---------- NAMESPACE | 3 + NEWS.md | 5 ++ R/KNMI_daily_transform.R | 11 ++--- R/LJ_daily_precipitation.R | 10 ++-- R/daily_response.R | 15 ++++--- R/daily_response_seascorr.R |only R/glimpse_daily_data.R | 1 R/monthly_response.R | 10 ++-- R/plot_extreme.R | 4 + R/plot_heatmap.R | 10 +++- R/swit272.R | 2 R/swit272_daily_temperatures.R | 3 + R/swit272_monthly_temperatures.R |only data/LJ_daily_precipitation.rda |binary data/swit272.rda |binary data/swit272_monthly_temperatures.rda |only inst/doc/Examples_daily_response.html | 68 ++++++++++++++++----------------- inst/doc/compare_methods_vignette.html | 4 - man/KNMI_daily_transform.Rd | 3 - man/LJ_daily_precipitation.Rd | 10 ++-- man/daily_response.Rd | 5 +- man/daily_response_seascorr.Rd |only man/glimpse_daily_data.Rd | 1 man/swit272.Rd | 2 man/swit272_daily_temperatures.Rd | 3 + man/swit272_monthly_temperatures.Rd |only 28 files changed, 138 insertions(+), 98 deletions(-)
Title: Clinical Trial Designs in 'RStan'
Description: A showcase of Bayesian clinical trial designs, implemented in
'RStan' and R. Some designs are implemented in R for the first
time (e.g. 'EffTox' by Thall and Cook, 2004,
<https://biostatistics.mdanderson.org/softwaredownload/SingleSoftware.aspx?Software_Id=2>).
Given the emphasis on flexibility in Bayesian analysis,
the implementations in a common language and style may serve as a cookbook
to encourage the use of Bayesian methods in trials. Compiled 'RStan' models
are provided in addition to helper classes and functions to perform
simulations and inference on observed trial outcomes.
There is a preponderance of early phase trial designs because this is where
Bayesian methods are used most. If there is a published Bayesian design you
want implemented in 'Stan', get in touch.
Author: Kristian Brock [aut, cre] (<https://orcid.org/0000-0002-3921-0166>),
Trustees of Columbia University [cph]
Maintainer: Kristian Brock <kristian.brock@gmail.com>
Diff between trialr versions 0.0.7 dated 2019-03-03 and 0.1.0 dated 2019-04-21
trialr-0.0.7/trialr/R/simulation.R |only trialr-0.0.7/trialr/R/thallhierarchicalbinary.R |only trialr-0.0.7/trialr/R/trialr.R |only trialr-0.0.7/trialr/build/partial.rdb |only trialr-0.0.7/trialr/exec |only trialr-0.0.7/trialr/inst/chunks |only trialr-0.0.7/trialr/man/Rcpp_model_BebopInPeps2-class.Rd |only trialr-0.0.7/trialr/man/Rcpp_model_EffTox-class.Rd |only trialr-0.0.7/trialr/man/Rcpp_model_ThallHierarchicalBinary-class.Rd |only trialr-0.0.7/trialr/man/efftox_analysis.Rd |only trialr-0.0.7/trialr/man/gather_samples.crm_fit.Rd |only trialr-0.0.7/trialr/man/gather_samples.efftox_fit.Rd |only trialr-0.0.7/trialr/man/model_BebopInPeps2.Rd |only trialr-0.0.7/trialr/man/model_EffTox.Rd |only trialr-0.0.7/trialr/man/model_ThallHierarchicalBinary.Rd |only trialr-0.0.7/trialr/man/peps2_params.Rd |only trialr-0.0.7/trialr/man/peps2_run_sims.Rd |only trialr-0.0.7/trialr/man/stan_files.Rd |only trialr-0.0.7/trialr/man/stanmodels.Rd |only trialr-0.0.7/trialr/man/thallhierarchicalbinary_parameters_demo.Rd |only trialr-0.0.7/trialr/man/thallhierarchicalbinary_params.Rd |only trialr-0.0.7/trialr/src/Modules.cpp |only trialr-0.0.7/trialr/src/RcppExports.cpp |only trialr-0.0.7/trialr/src/include |only trialr-0.0.7/trialr/src/trialr-init.c |only trialr-0.0.7/trialr/tests/testthat/test_df_parse_outcomes.R |only trialr-0.0.7/trialr/tools/make_cpp.R |only trialr-0.0.7/trialr/vignettes/trialr-overview.Rmd |only trialr-0.1.0/trialr/DESCRIPTION | 48 - trialr-0.1.0/trialr/MD5 | 183 ++--- trialr-0.1.0/trialr/NAMESPACE | 67 - trialr-0.1.0/trialr/NEWS.md | 24 trialr-0.1.0/trialr/R/CRM.R | 132 +-- trialr-0.1.0/trialr/R/EffTox.R | 180 +---- trialr-0.1.0/trialr/R/dosefinding.R | 134 ++- trialr-0.1.0/trialr/R/hierarchical.R |only trialr-0.1.0/trialr/R/peps2.R | 224 ++++-- trialr-0.1.0/trialr/R/ranBin2.R | 1 trialr-0.1.0/trialr/R/stanmodels.R | 35 trialr-0.1.0/trialr/R/trialr-package.R |only trialr-0.1.0/trialr/R/zzz.R | 3 trialr-0.1.0/trialr/README.md | 150 ++-- trialr-0.1.0/trialr/build/vignette.rds |binary trialr-0.1.0/trialr/inst/doc/BEBOP.R | 43 - trialr-0.1.0/trialr/inst/doc/BEBOP.Rmd | 57 - trialr-0.1.0/trialr/inst/doc/BEBOP.html | 55 - trialr-0.1.0/trialr/inst/doc/CRM-visualisation.R | 69 + trialr-0.1.0/trialr/inst/doc/CRM-visualisation.Rmd | 96 +- trialr-0.1.0/trialr/inst/doc/CRM-visualisation.html | 113 ++- trialr-0.1.0/trialr/inst/doc/CRM.R | 42 - trialr-0.1.0/trialr/inst/doc/CRM.Rmd | 101 +- trialr-0.1.0/trialr/inst/doc/CRM.html | 220 ++++-- trialr-0.1.0/trialr/inst/doc/EffTox.R | 18 trialr-0.1.0/trialr/inst/doc/EffTox.Rmd | 46 - trialr-0.1.0/trialr/inst/doc/EffTox.html | 118 +-- trialr-0.1.0/trialr/inst/doc/HierarchicalBayesianResponse.R | 37 - trialr-0.1.0/trialr/inst/doc/HierarchicalBayesianResponse.Rmd | 67 - trialr-0.1.0/trialr/inst/doc/HierarchicalBayesianResponse.html | 352 +++++----- trialr-0.1.0/trialr/inst/doc/TITE-CRM.R |only trialr-0.1.0/trialr/inst/doc/TITE-CRM.Rmd |only trialr-0.1.0/trialr/inst/doc/TITE-CRM.html |only trialr-0.1.0/trialr/inst/doc/trialr-overview.R | 37 - trialr-0.1.0/trialr/inst/doc/trialr-overview.Rmd | 89 +- trialr-0.1.0/trialr/inst/doc/trialr-overview.html | 267 ++++--- trialr-0.1.0/trialr/inst/include |only trialr-0.1.0/trialr/man/crm_fit-class.Rd | 1 trialr-0.1.0/trialr/man/crm_params-class.Rd | 1 trialr-0.1.0/trialr/man/crm_process.Rd | 25 trialr-0.1.0/trialr/man/df_parse_outcomes.Rd | 8 trialr-0.1.0/trialr/man/efftox_analysis_to_df.Rd | 19 trialr-0.1.0/trialr/man/efftox_contour_plot.Rd | 39 - trialr-0.1.0/trialr/man/efftox_fit-class.Rd | 1 trialr-0.1.0/trialr/man/efftox_params-class.Rd | 1 trialr-0.1.0/trialr/man/efftox_process.Rd | 21 trialr-0.1.0/trialr/man/efftox_superiority.Rd | 10 trialr-0.1.0/trialr/man/efftox_utility_density_plot.Rd | 10 trialr-0.1.0/trialr/man/figures/README-unnamed-chunk-11-1.png |binary trialr-0.1.0/trialr/man/figures/README-unnamed-chunk-14-1.png |binary trialr-0.1.0/trialr/man/figures/README-unnamed-chunk-6-1.png |binary trialr-0.1.0/trialr/man/parse_dose_finding_outcomes.Rd |only trialr-0.1.0/trialr/man/peps2_get_data.Rd | 11 trialr-0.1.0/trialr/man/peps2_process.Rd | 27 trialr-0.1.0/trialr/man/stan_crm.Rd | 34 trialr-0.1.0/trialr/man/stan_efftox.Rd | 1 trialr-0.1.0/trialr/man/stan_efftox_demo.Rd | 1 trialr-0.1.0/trialr/man/stan_hierarchical_response_thall.Rd |only trialr-0.1.0/trialr/man/stan_peps2.Rd |only trialr-0.1.0/trialr/man/trialr-package.Rd | 100 -- trialr-0.1.0/trialr/src/Makevars | 17 trialr-0.1.0/trialr/src/Makevars.win | 20 trialr-0.1.0/trialr/src/init.cpp |only trialr-0.1.0/trialr/src/stan_files |only trialr-0.1.0/trialr/tests/testthat.R | 8 trialr-0.1.0/trialr/tests/testthat/test_dosefinding.R |only trialr-0.1.0/trialr/tests/testthat/test_hierarchical.R |only trialr-0.1.0/trialr/tests/testthat/test_peps2.R |only trialr-0.1.0/trialr/tests/testthat/test_ranBin2.R |only trialr-0.1.0/trialr/tests/testthat/test_stan_crm.R | 19 trialr-0.1.0/trialr/tools/make_cc.R |only trialr-0.1.0/trialr/vignettes/BEBOP.Rmd | 57 - trialr-0.1.0/trialr/vignettes/CRM-visualisation.Rmd | 96 +- trialr-0.1.0/trialr/vignettes/CRM.Rmd | 101 +- trialr-0.1.0/trialr/vignettes/EffTox.Rmd | 46 - trialr-0.1.0/trialr/vignettes/EffTox_cache/html/__packages | 15 trialr-0.1.0/trialr/vignettes/EffTox_files/figure-html/unnamed-chunk-5-1.png |binary trialr-0.1.0/trialr/vignettes/EffTox_files/figure-html/unnamed-chunk-6-1.png |binary trialr-0.1.0/trialr/vignettes/HierarchicalBayesianResponse.Rmd | 67 - trialr-0.1.0/trialr/vignettes/TITE-CRM.Rmd |only 108 files changed, 2073 insertions(+), 1691 deletions(-)
Title: Model-Free Reinforcement Learning
Description: Performs model-free reinforcement learning in R. This implementation enables the learning
of an optimal policy based on sample sequences consisting of states, actions and rewards. In
addition, it supplies multiple predefined reinforcement learning algorithms, such as experience
replay. Methodological details can be found in Sutton and Barto (1998) <ISBN:0262039249>.
Author: Nicolas Proellochs [aut, cre],
Stefan Feuerriegel [aut]
Maintainer: Nicolas Proellochs <nicolas.proellochs@is.uni-freiburg.de>
Diff between ReinforcementLearning versions 1.0.2 dated 2018-04-08 and 1.0.3 dated 2019-04-21
DESCRIPTION | 12 ++++++------ LICENSE | 2 +- MD5 | 24 ++++++++++++------------ NEWS.md | 8 ++++++++ R/ReinforcementLearning.R | 5 ++++- build/vignette.rds |binary inst/doc/ReinforcementLearning.html | 9 +++++---- man/ReinforcementLearning.Rd | 7 ++++--- man/sampleExperience.Rd | 4 ++-- man/sampleGridSequence.Rd | 4 ++-- tests/testthat.R | 4 +++- tests/testthat/test.ReinforcementLearning.R | 5 +++++ tests/testthat/test.experienceReplay.R | 1 + 13 files changed, 53 insertions(+), 32 deletions(-)
More information about ReinforcementLearning at CRAN
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Title: Stack and Reshape Datasets After Splitting Concatenated Values
Description: Online data collection tools like Google Forms often export
multiple-response questions with data concatenated in cells. The
concat.split (cSplit) family of functions splits such data into separate
cells. The package also includes functions to stack groups of columns and
to reshape wide data, even when the data are "unbalanced"---something
which reshape (from base R) does not handle, and which melt and dcast from
reshape2 do not easily handle.
Author: Ananda Mahto
Maintainer: Ananda Mahto <mrdwab@gmail.com>
Diff between splitstackshape versions 1.4.6 dated 2018-07-23 and 1.4.8 dated 2019-04-21
DESCRIPTION | 10 +++++----- MD5 | 20 ++++++++++---------- NEWS.md | 4 ++++ R/splitstackshape-package.R | 2 +- README.md | 8 ++++---- man/cSplit.Rd | 3 ++- man/concat.split.Rd | 4 ++-- man/concat.split.multiple.Rd | 3 ++- man/merged.stack.Rd | 3 ++- man/splitstackshape-package.Rd | 2 +- tests/testthat/test_stratified.R | 1 + 11 files changed, 34 insertions(+), 26 deletions(-)
More information about splitstackshape at CRAN
Permanent link
Title: Estimated Marginal Means, aka Least-Squares Means
Description: Obtain estimated marginal means (EMMs) for many linear, generalized
linear, and mixed models. Compute contrasts or linear functions of EMMs,
trends, and comparisons of slopes. Plots and compact letter displays.
Least-squares means are discussed, and the term "estimated marginal means"
is suggested, in Searle, Speed, and Milliken (1980) Population marginal means
in the linear model: An alternative to least squares means, The American
Statistician 34(4), 216-221 <doi:10.1080/00031305.1980.10483031>.
Author: Russell Lenth [aut, cre, cph],
Henrik Singmann [ctb],
Jonathon Love [ctb],
Paul Buerkner [ctb],
Maxime Herve [ctb]
Maintainer: Russell Lenth <russell-lenth@uiowa.edu>
Diff between emmeans versions 1.3.3 dated 2019-03-02 and 1.3.4 dated 2019-04-21
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Title: Toolbox for Pseudo and Quasi Random Number Generation and Random
Generator Tests
Description: Provides (1) pseudo random generators - general linear congruential generators,
multiple recursive generators and generalized feedback shift register (SF-Mersenne Twister
algorithm and WELL generators); (2) quasi random generators - the Torus algorithm, the
Sobol sequence, the Halton sequence (including the Van der Corput sequence) and (3) some
generator tests - the gap test, the serial test, the poker test.
See e.g. Gentle (2003) <doi:10.1007/b97336>. The package can be provided
without the rngWELL dependency on demand.
Take a look at the Distribution task view of types and tests of random number generators.
Version in Memoriam of Diethelm and Barbara Wuertz.
Author: R port by Yohan Chalabi, Christophe Dutang, Petr Savicky and Diethelm Wuertz with some underlying C codes of (i) the SFMT algorithm from M. Matsumoto and M. Saito, (ii) the Knuth-TAOCP RNG from D. Knuth.
Maintainer: Christophe Dutang <christophe.dutang@ensimag.fr>
Diff between randtoolbox versions 1.17.1 dated 2018-02-14 and 1.30.0 dated 2019-04-21
randtoolbox-1.17.1/randtoolbox/R/trueRNG.R |only randtoolbox-1.17.1/randtoolbox/src/Makevars |only randtoolbox-1.30.0/randtoolbox/DESCRIPTION | 31 randtoolbox-1.30.0/randtoolbox/MD5 | 113 randtoolbox-1.30.0/randtoolbox/NAMESPACE | 25 randtoolbox-1.30.0/randtoolbox/R/pseudoRNG.R | 257 randtoolbox-1.30.0/randtoolbox/R/qmc.R | 104 randtoolbox-1.30.0/randtoolbox/R/quasiRNG.R | 416 randtoolbox-1.30.0/randtoolbox/R/randtoolboxEnv.R | 6 randtoolbox-1.30.0/randtoolbox/R/runifInterface.R | 186 randtoolbox-1.30.0/randtoolbox/R/sobol-basic.R |only randtoolbox-1.30.0/randtoolbox/R/testRNG.R | 1193 +- randtoolbox-1.30.0/randtoolbox/R/version.R | 3 randtoolbox-1.30.0/randtoolbox/R/zzz.R | 8 randtoolbox-1.30.0/randtoolbox/build/vignette.rds |binary randtoolbox-1.30.0/randtoolbox/configure | 4810 ++++------ randtoolbox-1.30.0/randtoolbox/configure.ac | 2 randtoolbox-1.30.0/randtoolbox/inst/NEWS | 50 randtoolbox-1.30.0/randtoolbox/inst/doc/fullpres.Rnw | 10 randtoolbox-1.30.0/randtoolbox/inst/doc/fullpres.pdf |binary randtoolbox-1.30.0/randtoolbox/inst/doc/shortintro.R | 3 randtoolbox-1.30.0/randtoolbox/inst/doc/shortintro.Rnw | 3 randtoolbox-1.30.0/randtoolbox/inst/doc/shortintro.pdf |binary randtoolbox-1.30.0/randtoolbox/man/colltestsparse.Rd | 2 randtoolbox-1.30.0/randtoolbox/man/get.primes.Rd | 2 randtoolbox-1.30.0/randtoolbox/man/overall-doc.Rd | 14 randtoolbox-1.30.0/randtoolbox/man/pseudoRNG.Rd | 11 randtoolbox-1.30.0/randtoolbox/man/quasiRNG.Rd | 33 randtoolbox-1.30.0/randtoolbox/man/runifInterface.Rd | 6 randtoolbox-1.30.0/randtoolbox/man/sobol-test-func.Rd |only randtoolbox-1.30.0/randtoolbox/src/LowDiscrepancy-halton.c |only randtoolbox-1.30.0/randtoolbox/src/LowDiscrepancy-halton.h |only randtoolbox-1.30.0/randtoolbox/src/LowDiscrepancy-sobol.c |only randtoolbox-1.30.0/randtoolbox/src/LowDiscrepancy-sobol.h |only randtoolbox-1.30.0/randtoolbox/src/LowDiscrepancy.f | 7 randtoolbox-1.30.0/randtoolbox/src/SFMT-sse2.h | 1 randtoolbox-1.30.0/randtoolbox/src/config.h | 7 randtoolbox-1.30.0/randtoolbox/src/config.h.in | 3 randtoolbox-1.30.0/randtoolbox/src/congruRand.c | 44 randtoolbox-1.30.0/randtoolbox/src/congruRand.h | 39 randtoolbox-1.30.0/randtoolbox/src/init.c | 142 randtoolbox-1.30.0/randtoolbox/src/locale.h | 1 randtoolbox-1.30.0/randtoolbox/src/mt19937ar.c | 7 randtoolbox-1.30.0/randtoolbox/src/mt19937ar.h |only randtoolbox-1.30.0/randtoolbox/src/old-Makevars.win.old |only randtoolbox-1.30.0/randtoolbox/src/randtoolbox.c | 1112 +- randtoolbox-1.30.0/randtoolbox/src/randtoolbox.h | 30 randtoolbox-1.30.0/randtoolbox/src/runifInterface.c | 10 randtoolbox-1.30.0/randtoolbox/src/runifInterface.h | 8 randtoolbox-1.30.0/randtoolbox/src/testrng.c | 256 randtoolbox-1.30.0/randtoolbox/src/testrng.h | 4 randtoolbox-1.30.0/randtoolbox/src/version.c | 2 randtoolbox-1.30.0/randtoolbox/src/version.h |only randtoolbox-1.30.0/randtoolbox/src/wellrng.h | 1 randtoolbox-1.30.0/randtoolbox/tests/test-SFMT.R |only randtoolbox-1.30.0/randtoolbox/tests/test-parallel-qmc.R |only randtoolbox-1.30.0/randtoolbox/tests/test-permut.R |only randtoolbox-1.30.0/randtoolbox/tests/test-runifInterface-LCG.R |only randtoolbox-1.30.0/randtoolbox/tests/test-runifInterface-nonLCG.R |only randtoolbox-1.30.0/randtoolbox/tests/test-sobol-Ccode.R |only randtoolbox-1.30.0/randtoolbox/tests/test-sobol-basic.R |only randtoolbox-1.30.0/randtoolbox/tests/test-sobol-scram.R | 96 randtoolbox-1.30.0/randtoolbox/tests/testHalton.R | 41 randtoolbox-1.30.0/randtoolbox/tests/testStirling.R |only randtoolbox-1.30.0/randtoolbox/tests/testTorus.R | 22 randtoolbox-1.30.0/randtoolbox/vignettes/fullpres.Rnw | 10 randtoolbox-1.30.0/randtoolbox/vignettes/shortintro.Rnw | 3 67 files changed, 4426 insertions(+), 4708 deletions(-)
Title: Comprehensive Luminescence Dating Data Analysis [upcoming]
Description: A collection of various R functions for the purpose of Luminescence
dating data analysis. This includes, amongst others, data import, export,
application of age models, curve deconvolution, sequence analysis and
plotting of equivalent dose distributions.
Author: Sebastian Kreutzer [aut, trl, cre, dtc]
(<https://orcid.org/0000-0002-0734-2199>),
Christoph Burow [aut, trl, dtc]
(<https://orcid.org/0000-0002-5023-4046>),
Michael Dietze [aut] (<https://orcid.org/0000-0001-6063-1726>),
Margret C. Fuchs [aut],
Christoph Schmidt [aut] (<https://orcid.org/0000-0002-2309-3209>),
Manfred Fischer [aut, trl],
Johannes Friedrich [aut] (<https://orcid.org/0000-0002-0805-9547>),
Norbert Mercier [ctb] (<https://orcid.org/0000-0002-6375-9108>),
Rachel K. Smedley [ctb] (<https://orcid.org/0000-0001-7773-5193>),
Claire Christophe [ctb],
Antoine Zink [ctb] (<https://orcid.org/0000-0001-7146-1101>),
Julie Durcan [ctb] (<https://orcid.org/0000-0001-8724-8022>),
Georgina E. King [ctb, dtc] (<https://orcid.org/0000-0003-1059-8192>),
Anne Philippe [ctb],
Guillaume Guerin [ctb] (<https://orcid.org/0000-0001-6298-5579>),
Svenja Riedesel [ctb] (<https://orcid.org/0000-0003-2936-8776>),
Martin Autzen [ctb],
Markus Fuchs [ths]
Maintainer: Sebastian Kreutzer <sebastian.kreutzer@u-bordeaux-montaigne.fr>
Diff between Luminescence versions 0.8.6 dated 2018-10-05 and 0.9.0.110 dated 2019-04-21
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Luminescence-0.9.0.110/Luminescence/man/plot_DetPlot.Rd | 2 Luminescence-0.9.0.110/Luminescence/man/plot_FilterCombinations.Rd | 2 Luminescence-0.9.0.110/Luminescence/man/plot_GrowthCurve.Rd | 4 Luminescence-0.9.0.110/Luminescence/man/plot_Histogram.Rd | 2 Luminescence-0.9.0.110/Luminescence/man/plot_KDE.Rd | 2 Luminescence-0.9.0.110/Luminescence/man/plot_NRt.Rd | 2 Luminescence-0.9.0.110/Luminescence/man/plot_RLum.Analysis.Rd | 4 Luminescence-0.9.0.110/Luminescence/man/plot_RLum.Data.Curve.Rd | 2 Luminescence-0.9.0.110/Luminescence/man/plot_RLum.Data.Image.Rd | 2 Luminescence-0.9.0.110/Luminescence/man/plot_RLum.Data.Spectrum.Rd | 113 +- Luminescence-0.9.0.110/Luminescence/man/plot_RLum.Rd | 4 Luminescence-0.9.0.110/Luminescence/man/plot_RLum.Results.Rd | 2 Luminescence-0.9.0.110/Luminescence/man/plot_RadialPlot.Rd | 2 Luminescence-0.9.0.110/Luminescence/man/plot_Risoe.BINfileData.Rd | 2 Luminescence-0.9.0.110/Luminescence/man/plot_ViolinPlot.Rd | 2 Luminescence-0.9.0.110/Luminescence/man/read_BIN2R.Rd | 15 Luminescence-0.9.0.110/Luminescence/man/read_Daybreak2R.Rd | 2 Luminescence-0.9.0.110/Luminescence/man/read_PSL2R.Rd | 6 Luminescence-0.9.0.110/Luminescence/man/read_SPE2R.Rd | 2 Luminescence-0.9.0.110/Luminescence/man/read_XSYG2R.Rd | 6 Luminescence-0.9.0.110/Luminescence/man/replicate_RLum.Rd | 2 Luminescence-0.9.0.110/Luminescence/man/report_RLum.Rd | 2 Luminescence-0.9.0.110/Luminescence/man/sTeve.Rd | 2 Luminescence-0.9.0.110/Luminescence/man/scale_GammaDose.Rd |only Luminescence-0.9.0.110/Luminescence/man/set_RLum.Rd | 2 Luminescence-0.9.0.110/Luminescence/man/set_Risoe.BINfileData.Rd | 2 Luminescence-0.9.0.110/Luminescence/man/smooth_RLum.Rd | 2 Luminescence-0.9.0.110/Luminescence/man/structure_RLum.Rd | 2 Luminescence-0.9.0.110/Luminescence/man/template_DRAC.Rd | 2 Luminescence-0.9.0.110/Luminescence/man/tune_Data.Rd | 2 Luminescence-0.9.0.110/Luminescence/man/use_DRAC.Rd | 2 Luminescence-0.9.0.110/Luminescence/man/verify_SingleGrainData.Rd | 6 Luminescence-0.9.0.110/Luminescence/man/write_R2BIN.Rd | 27 Luminescence-0.9.0.110/Luminescence/man/write_RLum2CSV.Rd | 28 Luminescence-0.9.0.110/Luminescence/tests/testthat/test_RLum.Data.Curve.R | 2 Luminescence-0.9.0.110/Luminescence/tests/testthat/test_RLum.Data.Spectrum.R |only Luminescence-0.9.0.110/Luminescence/tests/testthat/test_analyse_FadingMeasurement.R |only Luminescence-0.9.0.110/Luminescence/tests/testthat/test_analyse_SARCWOSL.R | 16 Luminescence-0.9.0.110/Luminescence/tests/testthat/test_analyse_SARTL.R | 18 Luminescence-0.9.0.110/Luminescence/tests/testthat/test_analyse_pIRIRSequence.R | 11 Luminescence-0.9.0.110/Luminescence/tests/testthat/test_apply_CosmicRayRemoval.R | 25 Luminescence-0.9.0.110/Luminescence/tests/testthat/test_calc_AliquotSize.R | 14 Luminescence-0.9.0.110/Luminescence/tests/testthat/test_calc_Huntley2008.R | 30 Luminescence-0.9.0.110/Luminescence/tests/testthat/test_convert_Wavelength2Energy.R |only Luminescence-0.9.0.110/Luminescence/tests/testthat/test_fit_OSLLifeTimes.R |only Luminescence-0.9.0.110/Luminescence/tests/testthat/test_fit_ThermalQuenching.R |only Luminescence-0.9.0.110/Luminescence/tests/testthat/test_get_RLum.R | 4 Luminescence-0.9.0.110/Luminescence/tests/testthat/test_internals.R | 59 + Luminescence-0.9.0.110/Luminescence/tests/testthat/test_plot_DRCSummary.R |only Luminescence-0.9.0.110/Luminescence/tests/testthat/test_plot_GrowthCurve.R | 61 + Luminescence-0.9.0.110/Luminescence/tests/testthat/test_plot_RLum.Data.Spectrum.R |only Luminescence-0.9.0.110/Luminescence/tests/testthat/test_read_BIN2R.R | 6 Luminescence-0.9.0.110/Luminescence/tests/testthat/test_scale_GammaDose.R |only Luminescence-0.9.0.110/Luminescence/tests/testthat/test_write_R2BIN.R | 1 Luminescence-0.9.0.110/Luminescence/tests/testthat/test_write_RLum2CSV.R | 18 Luminescence-0.9.0.110/Luminescence/vignettes/HowTo_analyse_Al2O3.Rmd | 2 Luminescence-0.9.0.110/Luminescence/vignettes/HowTo_analyse_pIRIRMeasurements.Rmd | 2 206 files changed, 3359 insertions(+), 1899 deletions(-)
Title: Toolbox for Model Building and Forecasting
Description: Implements functions and instruments for regression model building and its
application to forecasting. The main scope of the package is in variables selection
and models specification for cases of time series data. This includes promotional
modelling, selection between different dynamic regressions with non-standard
distributions of errors, selection based on cross validation, solutions to the fat
regression model problem and more. Models developed in the package are tailored
specifically for forecasting purposes. So as a results there are several methods
that allow producing forecasts from these models and visualising them.
Author: Ivan Svetunkov [aut, cre] (Lecturer at Centre for Marketing Analytics
and Forecasting, Lancaster University, UK)
Maintainer: Ivan Svetunkov <ivan@svetunkov.ru>
Diff between greybox versions 0.4.1 dated 2019-01-27 and 0.5.0 dated 2019-04-21
greybox-0.4.1/greybox/man/nParam.Rd |only greybox-0.5.0/greybox/DESCRIPTION | 12 greybox-0.5.0/greybox/MD5 | 74 + greybox-0.5.0/greybox/NAMESPACE | 42 - greybox-0.5.0/greybox/NEWS | 36 greybox-0.5.0/greybox/R/RcppExports.R |only greybox-0.5.0/greybox/R/alm.R | 852 +++++++++++++++------ greybox-0.5.0/greybox/R/determination.R | 4 greybox-0.5.0/greybox/R/error-measures.R |only greybox-0.5.0/greybox/R/graphmaker.R | 67 + greybox-0.5.0/greybox/R/lmCombine.R | 2 greybox-0.5.0/greybox/R/lmDynamic.R | 2 greybox-0.5.0/greybox/R/methods.R | 552 +++++++++++-- greybox-0.5.0/greybox/R/rmc.R | 29 greybox-0.5.0/greybox/R/stepwise.R | 17 greybox-0.5.0/greybox/R/xregExpander.R | 41 - greybox-0.5.0/greybox/R/xregTransformer.R | 2 greybox-0.5.0/greybox/R/zzz.R | 4 greybox-0.5.0/greybox/README.md | 8 greybox-0.5.0/greybox/build/partial.rdb |binary greybox-0.5.0/greybox/inst/doc/alm.R | 5 greybox-0.5.0/greybox/inst/doc/alm.Rmd | 7 greybox-0.5.0/greybox/inst/doc/alm.html | 270 +++--- greybox-0.5.0/greybox/inst/doc/greybox.Rmd | 5 greybox-0.5.0/greybox/inst/doc/greybox.html | 28 greybox-0.5.0/greybox/inst/doc/maUsingGreybox.html | 19 greybox-0.5.0/greybox/inst/doc/ro.html | 45 - greybox-0.5.0/greybox/man/InformationCriteria.Rd | 4 greybox-0.5.0/greybox/man/actuals.Rd |only greybox-0.5.0/greybox/man/alm.Rd | 26 greybox-0.5.0/greybox/man/error-measures.Rd |only greybox-0.5.0/greybox/man/graphmaker.Rd | 13 greybox-0.5.0/greybox/man/hm.Rd |only greybox-0.5.0/greybox/man/measures.Rd |only greybox-0.5.0/greybox/man/nparam.Rd |only greybox-0.5.0/greybox/man/pinball.Rd |only greybox-0.5.0/greybox/man/pointLik.Rd | 6 greybox-0.5.0/greybox/man/polyprod.Rd |only greybox-0.5.0/greybox/man/xregExpander.Rd | 17 greybox-0.5.0/greybox/man/xregTransformer.Rd | 2 greybox-0.5.0/greybox/src |only greybox-0.5.0/greybox/vignettes/alm.Rmd | 7 greybox-0.5.0/greybox/vignettes/greybox.Rmd | 5 43 files changed, 1568 insertions(+), 635 deletions(-)
Title: Functional Time Series Analysis
Description: Functions for visualizing, modeling, forecasting and hypothesis testing of functional time series.
Author: Rob Hyndman [aut] (<https://orcid.org/0000-0002-2140-5352>),
Han Lin Shang [aut, cre, cph] (<https://orcid.org/0000-0003-1769-6430>)
Maintainer: Han Lin Shang <hanlin.shang@anu.edu.au>
Diff between ftsa versions 5.4 dated 2019-01-30 and 5.5 dated 2019-04-21
ChangeLog | 7 + DESCRIPTION | 10 - MD5 | 27 ++-- NAMESPACE | 5 R/FPCA.R |only R/FPE.trace.R |only R/LOS.R |only R/dmfpca.R |only R/farforecast.R | 116 +++++++++-------- R/fdpca.R | 320 +++++++++++++++++++++++++----------------------- R/ftsm.R | 7 - R/method.FPE.R |only R/mftsc.R |only R/tsse.R |only data/sim_ex_cluster.rda |only man/dmfpca.Rd |only man/farforecast.Rd | 15 +- man/ftsa-package.Rd | 22 ++- man/mftsc.Rd |only man/sim_ex_cluster.Rd |only 20 files changed, 291 insertions(+), 238 deletions(-)
Title: Verbal Autopsy Data Transformation for InSilicoVA and InterVA5
Algorithms
Description: Enables transformation of Verbal Autopsy data collected with the WHO 2016 questionnaire (versions 1.4.1 & 1.5.1)
or the WHO 2014 questionnaire for automated coding of Cause of Death using the InSilicoVA (data.type = "WHO2016") and
InterVA5 algorithms. Previous versions of this package supported user-supplied mappings (via the map_records function), but
this functionality has been removed. This package is made available by WHO and the Bloomberg Data for Health Initiative.
Author: Eungang Choi [aut],
Sam Clark [aut],
Zehang Li [aut],
Jason Thomas [aut, cre]
Maintainer: Jason Thomas <jarathomas@gmail.com>
Diff between CrossVA versions 0.9.6 dated 2019-04-18 and 0.9.7 dated 2019-04-21
DESCRIPTION | 6 MD5 | 12 NAMESPACE | 2 R/odk2openVA_2014.R | 55 - R/odk2openVA_v141.R | 58 - R/odk2openVA_v151.R | 59 - inst/doc/using-crossva-and-openva.html | 1177 +++++++++++++++++---------------- 7 files changed, 710 insertions(+), 659 deletions(-)
Title: Thermodynamic Calculations and Diagrams for Geochemistry
Description: An integrated set of tools for thermodynamic calculations in
aqueous geochemistry and geobiochemistry. Functions are provided for writing
balanced reactions to form species from user-selected basis species and for
calculating the standard molal properties of species and reactions, including
the standard Gibbs energy and equilibrium constant. Calculations of the
non-equilibrium chemical affinity and equilibrium chemical activity of species
can be portrayed on diagrams as a function of temperature, pressure, or
activity of basis species; in two dimensions, this gives a maximum affinity or
predominance diagram. The diagrams have formatted chemical formulas and axis
labels, and water stability limits can be added to Eh-pH, oxygen fugacity-
temperature, and other diagrams with a redox variable. The package has been
developed to handle common calculations in aqueous geochemistry, such as
solubility due to complexation of metal ions, mineral buffers of redox or pH,
and changing the basis species across a diagram ("mosaic diagrams"). CHNOSZ
also has unique capabilities for comparing the compositional and thermodynamic
properties of different proteins.
Author: Jeffrey Dick [aut, cre] (<https://orcid.org/0000-0002-0687-5890>),
R Core Team [ctb] (code derived from R's pmax())
Maintainer: Jeffrey Dick <j3ffdick@gmail.com>
Diff between CHNOSZ versions 1.3.1 dated 2019-03-03 and 1.3.2 dated 2019-04-21
CHNOSZ-1.3.1/CHNOSZ/demo/go-IU.R |only CHNOSZ-1.3.1/CHNOSZ/inst/extdata/Berman/BDat17.csv |only CHNOSZ-1.3.1/CHNOSZ/inst/extdata/Berman/Ber88.csv |only CHNOSZ-1.3.1/CHNOSZ/inst/extdata/Berman/Ber90.csv |only CHNOSZ-1.3.1/CHNOSZ/inst/extdata/Berman/DS10.csv |only CHNOSZ-1.3.1/CHNOSZ/inst/extdata/Berman/FDM+14.csv |only CHNOSZ-1.3.1/CHNOSZ/inst/extdata/Berman/JUN92.csv |only CHNOSZ-1.3.1/CHNOSZ/inst/extdata/Berman/SHD91.csv |only CHNOSZ-1.3.1/CHNOSZ/inst/extdata/Berman/ZS92.csv |only CHNOSZ-1.3.2/CHNOSZ/DESCRIPTION | 8 CHNOSZ-1.3.2/CHNOSZ/MD5 | 190 ++++--- CHNOSZ-1.3.2/CHNOSZ/NAMESPACE | 2 CHNOSZ-1.3.2/CHNOSZ/R/add.obigt.R | 3 CHNOSZ-1.3.2/CHNOSZ/R/affinity.R | 2 CHNOSZ-1.3.2/CHNOSZ/R/berman.R | 25 - CHNOSZ-1.3.2/CHNOSZ/R/diagram.R | 31 - CHNOSZ-1.3.2/CHNOSZ/R/eqdata.R | 83 ++- CHNOSZ-1.3.2/CHNOSZ/R/examples.R | 9 CHNOSZ-1.3.2/CHNOSZ/R/nonideal.R | 8 CHNOSZ-1.3.2/CHNOSZ/R/retrieve.R | 153 +++--- CHNOSZ-1.3.2/CHNOSZ/R/solubility.R | 4 CHNOSZ-1.3.2/CHNOSZ/R/thermo.R | 5 CHNOSZ-1.3.2/CHNOSZ/R/util.plot.R | 41 + CHNOSZ-1.3.2/CHNOSZ/R/zzz.R | 17 CHNOSZ-1.3.2/CHNOSZ/build/vignette.rds |binary CHNOSZ-1.3.2/CHNOSZ/demo/00Index | 4 CHNOSZ-1.3.2/CHNOSZ/demo/adenine.R | 2 CHNOSZ-1.3.2/CHNOSZ/demo/affinity.R | 6 CHNOSZ-1.3.2/CHNOSZ/demo/aluminum.R |only CHNOSZ-1.3.2/CHNOSZ/demo/arsenic.R |only CHNOSZ-1.3.2/CHNOSZ/demo/contour.R |only CHNOSZ-1.3.2/CHNOSZ/demo/gold.R | 2 CHNOSZ-1.3.2/CHNOSZ/inst/CHECKLIST | 27 - CHNOSZ-1.3.2/CHNOSZ/inst/NEWS | 60 ++ CHNOSZ-1.3.2/CHNOSZ/inst/doc/anintro.R | 38 - CHNOSZ-1.3.2/CHNOSZ/inst/doc/anintro.Rmd | 90 +-- CHNOSZ-1.3.2/CHNOSZ/inst/doc/anintro.html | 234 ++++----- CHNOSZ-1.3.2/CHNOSZ/inst/doc/eos-regress.R | 24 CHNOSZ-1.3.2/CHNOSZ/inst/doc/eos-regress.Rmd | 84 +-- CHNOSZ-1.3.2/CHNOSZ/inst/doc/eos-regress.html | 63 +- CHNOSZ-1.3.2/CHNOSZ/inst/doc/equilibrium.pdf |binary CHNOSZ-1.3.2/CHNOSZ/inst/doc/hotspring.pdf |binary CHNOSZ-1.3.2/CHNOSZ/inst/doc/mklinks.sh | 5 CHNOSZ-1.3.2/CHNOSZ/inst/doc/obigt.R | 24 CHNOSZ-1.3.2/CHNOSZ/inst/doc/obigt.Rmd | 26 - CHNOSZ-1.3.2/CHNOSZ/inst/doc/obigt.html | 217 +++++--- CHNOSZ-1.3.2/CHNOSZ/inst/extdata/Berman/BDat17_2017.csv |only CHNOSZ-1.3.2/CHNOSZ/inst/extdata/Berman/Ber88_1988.csv |only CHNOSZ-1.3.2/CHNOSZ/inst/extdata/Berman/Ber90_1990.csv |only CHNOSZ-1.3.2/CHNOSZ/inst/extdata/Berman/DS10_2010.csv |only CHNOSZ-1.3.2/CHNOSZ/inst/extdata/Berman/FDM+14_2014.csv |only CHNOSZ-1.3.2/CHNOSZ/inst/extdata/Berman/JUN92_1992.csv |only CHNOSZ-1.3.2/CHNOSZ/inst/extdata/Berman/SHD91_1991.csv |only CHNOSZ-1.3.2/CHNOSZ/inst/extdata/Berman/VGT92_1992.csv |only CHNOSZ-1.3.2/CHNOSZ/inst/extdata/Berman/VPT01_2001.csv |only CHNOSZ-1.3.2/CHNOSZ/inst/extdata/Berman/VPV05_2005.csv |only CHNOSZ-1.3.2/CHNOSZ/inst/extdata/Berman/ZS92_1992.csv |only CHNOSZ-1.3.2/CHNOSZ/inst/extdata/OBIGT/AS04.csv | 1 CHNOSZ-1.3.2/CHNOSZ/inst/extdata/OBIGT/Berman_cr.csv | 4 CHNOSZ-1.3.2/CHNOSZ/inst/extdata/OBIGT/SLOP98.csv | 52 ++ CHNOSZ-1.3.2/CHNOSZ/inst/extdata/OBIGT/SUPCRT92.csv | 1 CHNOSZ-1.3.2/CHNOSZ/inst/extdata/OBIGT/biotic_aq.csv.xz |binary CHNOSZ-1.3.2/CHNOSZ/inst/extdata/OBIGT/inorganic_aq.csv.xz |binary CHNOSZ-1.3.2/CHNOSZ/inst/extdata/OBIGT/inorganic_cr.csv.xz |binary CHNOSZ-1.3.2/CHNOSZ/inst/extdata/OBIGT/organic_aq.csv.xz |binary CHNOSZ-1.3.2/CHNOSZ/inst/extdata/OBIGT/organic_cr.csv.xz |binary CHNOSZ-1.3.2/CHNOSZ/inst/extdata/OBIGT/refs.csv | 32 - CHNOSZ-1.3.2/CHNOSZ/inst/extdata/adds/obigt_check.csv | 321 ++++++------- CHNOSZ-1.3.2/CHNOSZ/inst/extdata/cpetc/Mer75_Table4.csv |only CHNOSZ-1.3.2/CHNOSZ/inst/extdata/cpetc/TKSS14_Fig2.csv |only CHNOSZ-1.3.2/CHNOSZ/inst/extdata/thermo/stoich.csv.xz |only CHNOSZ-1.3.2/CHNOSZ/man/EOSregress.Rd | 14 CHNOSZ-1.3.2/CHNOSZ/man/add.obigt.Rd | 39 + CHNOSZ-1.3.2/CHNOSZ/man/add.protein.Rd | 10 CHNOSZ-1.3.2/CHNOSZ/man/affinity.Rd | 2 CHNOSZ-1.3.2/CHNOSZ/man/basis.Rd | 4 CHNOSZ-1.3.2/CHNOSZ/man/berman.Rd | 12 CHNOSZ-1.3.2/CHNOSZ/man/buffer.Rd | 4 CHNOSZ-1.3.2/CHNOSZ/man/diagram.Rd | 27 - CHNOSZ-1.3.2/CHNOSZ/man/eos.Rd | 4 CHNOSZ-1.3.2/CHNOSZ/man/eqdata.Rd | 8 CHNOSZ-1.3.2/CHNOSZ/man/examples.Rd | 13 CHNOSZ-1.3.2/CHNOSZ/man/extdata.Rd | 32 - CHNOSZ-1.3.2/CHNOSZ/man/info.Rd | 6 CHNOSZ-1.3.2/CHNOSZ/man/ionize.aa.Rd | 4 CHNOSZ-1.3.2/CHNOSZ/man/makeup.Rd | 6 CHNOSZ-1.3.2/CHNOSZ/man/nonideal.Rd | 4 CHNOSZ-1.3.2/CHNOSZ/man/protein.info.Rd | 20 CHNOSZ-1.3.2/CHNOSZ/man/retrieve.Rd | 54 +- CHNOSZ-1.3.2/CHNOSZ/man/species.Rd | 10 CHNOSZ-1.3.2/CHNOSZ/man/subcrt.Rd | 7 CHNOSZ-1.3.2/CHNOSZ/man/thermo.Rd | 42 + CHNOSZ-1.3.2/CHNOSZ/man/util.data.Rd | 20 CHNOSZ-1.3.2/CHNOSZ/man/util.fasta.Rd | 8 CHNOSZ-1.3.2/CHNOSZ/man/util.formula.Rd | 2 CHNOSZ-1.3.2/CHNOSZ/man/util.misc.Rd | 4 CHNOSZ-1.3.2/CHNOSZ/man/util.plot.Rd | 33 + CHNOSZ-1.3.2/CHNOSZ/man/util.seq.Rd | 2 CHNOSZ-1.3.2/CHNOSZ/man/util.water.Rd | 4 CHNOSZ-1.3.2/CHNOSZ/tests/testthat/test-info.R | 4 CHNOSZ-1.3.2/CHNOSZ/tests/testthat/test-retrieve.R | 22 CHNOSZ-1.3.2/CHNOSZ/vignettes/CHNOSZ.dia |binary CHNOSZ-1.3.2/CHNOSZ/vignettes/CHNOSZ.png |binary CHNOSZ-1.3.2/CHNOSZ/vignettes/anintro.Rmd | 90 +-- CHNOSZ-1.3.2/CHNOSZ/vignettes/eos-regress.Rmd | 84 +-- CHNOSZ-1.3.2/CHNOSZ/vignettes/mklinks.sh | 5 CHNOSZ-1.3.2/CHNOSZ/vignettes/obigt.Rmd | 26 - CHNOSZ-1.3.2/CHNOSZ/vignettes/obigt.bib | 169 ++++-- CHNOSZ-1.3.2/CHNOSZ/vignettes/vig.bib | 39 - 109 files changed, 1586 insertions(+), 1146 deletions(-)
Title: Bayesian Online Changepoint Detection
Description: Implements the Bayesian online changepoint
detection method by Adams and MacKay (2007)
<arXiv:0710.3742> for univariate or multivariate data.
Gaussian and Poisson probability models are implemented.
Provides post-processing functions with
alternative ways to extract changepoints.
Author: Andrea Pagotto
Maintainer: Andrea Pagotto <ajpagotto@gmail.com>
Diff between ocp versions 0.1.0 dated 2018-12-27 and 0.1.1 dated 2019-04-21
DESCRIPTION | 6 +- MD5 | 16 ++--- build/vignette.rds |binary inst/doc/introduction.html | 102 ++++++++++++++++++++++++++++++------ tests/testthat/Rplots.pdf |binary tests/testthat/test-examples.R | 2 tests/testthat/test-minoutputs.R | 8 -- tests/testthat/test-missingpoints.R | 2 tests/testthat/test-ocpd.R | 19 ------ 9 files changed, 103 insertions(+), 52 deletions(-)
Title: Interpolate Munsell Renotation Data from Hue/Chroma to CIE/RGB
Description: Methods for interpolating data in the Munsell color system following the ASTM D-1535 standard. Hues and chromas with decimal values can be interpolated and converted to/from the Munsell color system and CIE xyY, CIE XYZ, CIE Lab, CIE Luv, or RGB. Includes ISCC-NBS color block lookup. Based on the work by Paul Centore, "The Munsell and Kubelka-Munk Toolbox".
Author: Jose Gama [aut, trl],
Paul Centore [aut, cph],
Glenn Davis [aut, cre]
Maintainer: Glenn Davis <gdavis@gluonics.com>
Diff between munsellinterpol versions 2.2-1 dated 2019-01-30 and 2.3-1 dated 2019-04-21
munsellinterpol-2.2-1/munsellinterpol/demo |only munsellinterpol-2.2-1/munsellinterpol/inst/extdata/OptimalColoursForIlluminantD65.txt |only munsellinterpol-2.2-1/munsellinterpol/man/xyz2srgb.Rd |only munsellinterpol-2.3-1/munsellinterpol/DESCRIPTION | 12 - munsellinterpol-2.3-1/munsellinterpol/MD5 | 36 +-- munsellinterpol-2.3-1/munsellinterpol/NAMESPACE | 11 - munsellinterpol-2.3-1/munsellinterpol/NEWS.md | 8 munsellinterpol-2.3-1/munsellinterpol/R/datasets.R | 49 ++-- munsellinterpol-2.3-1/munsellinterpol/R/hogs.R |only munsellinterpol-2.3-1/munsellinterpol/R/optimals.R | 11 - munsellinterpol-2.3-1/munsellinterpol/R/plots.R | 2 munsellinterpol-2.3-1/munsellinterpol/R/sysdata.rda |binary munsellinterpol-2.3-1/munsellinterpol/R/zonohedron.R |only munsellinterpol-2.3-1/munsellinterpol/build/vignette.rds |binary munsellinterpol-2.3-1/munsellinterpol/inst/doc/dental.html | 27 +- munsellinterpol-2.3-1/munsellinterpol/inst/doc/lightness.pdf |binary munsellinterpol-2.3-1/munsellinterpol/inst/doc/lociHC.pdf |binary munsellinterpol-2.3-1/munsellinterpol/inst/doc/munsellinterpol-guide.html | 27 +- munsellinterpol-2.3-1/munsellinterpol/man/IsWithinMacAdamLimits.Rd | 105 ++++++---- munsellinterpol-2.3-1/munsellinterpol/man/macros/macros.Rd | 6 munsellinterpol-2.3-1/munsellinterpol/tests/test-conversions.R | 5 21 files changed, 178 insertions(+), 121 deletions(-)
More information about munsellinterpol at CRAN
Permanent link
Title: Interactively Visualize Genetic Mutation Data using a
Lollipop-Diagram
Description: R interface for 'g3-lollipop' JavaScript library.
Visualize genetic mutation data using an interactive lollipop diagram in RStudio or your browser.
Author: Xin Guo [aut, cre]
Maintainer: Xin Guo <g3viz.group@gmail.com>
Diff between g3viz versions 1.0.4 dated 2019-04-06 and 1.1.0 dated 2019-04-21
DESCRIPTION | 6 MD5 | 24 +-- R/g3LollipopTheme.R | 4 build/vignette.rds |binary inst/doc/chart_themes.Rmd | 4 inst/doc/chart_themes.html | 38 +++--- inst/doc/introduction.R | 14 +- inst/doc/introduction.Rmd | 20 +-- inst/doc/introduction.html | 90 +++++++------- inst/htmlwidgets/lib/g3viz/g3-lollipop.js | 160 ++++++++++++++++---------- inst/htmlwidgets/lib/g3viz/g3-lollipop.min.js | 2 vignettes/chart_themes.Rmd | 4 vignettes/introduction.Rmd | 20 +-- 13 files changed, 216 insertions(+), 170 deletions(-)
Title: Export Tables to LaTeX or HTML
Description: Coerce data to LaTeX and HTML tables.
Author: David B. Dahl [aut],
David Scott [aut, cre],
Charles Roosen [aut],
Arni Magnusson [aut],
Jonathan Swinton [aut],
Ajay Shah [ctb],
Arne Henningsen [ctb],
Benno Puetz [ctb],
Bernhard Pfaff [ctb],
Claudio Agostinelli [ctb],
Claudius Loehnert [ctb],
David Mitchell [ctb],
David Whiting [ctb],
Fernando da Rosa [ctb],
Guido Gay [ctb],
Guido Schulz [ctb],
Ian Fellows [ctb],
Jeff Laake [ctb],
John Walker [ctb],
Jun Yan [ctb],
Liviu Andronic [ctb],
Markus Loecher [ctb],
Martin Gubri [ctb],
Matthieu Stigler [ctb],
Robert Castelo [ctb],
Seth Falcon [ctb],
Stefan Edwards [ctb],
Sven Garbade [ctb],
Uwe Ligges [ctb]
Maintainer: David Scott <d.scott@auckland.ac.nz>
Diff between xtable versions 1.8-3 dated 2018-08-29 and 1.8-4 dated 2019-04-21
DESCRIPTION | 10 - MD5 | 38 ++-- NAMESPACE | 28 +-- NEWS | 19 +- R/xtable.R | 264 +++++++++++++++--------------- build/vignette.rds |binary inst/doc/OtherPackagesGallery.R | 111 ------------ inst/doc/OtherPackagesGallery.Rnw | 322 ++++++++++++++++++------------------- inst/doc/OtherPackagesGallery.pdf |binary inst/doc/listOfTablesGallery.pdf |binary inst/doc/margintable.pdf |binary inst/doc/xtableGallery.Rnw | 8 inst/doc/xtableGallery.pdf |binary man/print.xtableMatharray.Rd | 2 man/xtable.Rd | 9 - man/xtableFtable.Rd | 14 - man/xtableList.Rd | 30 +-- man/xtableMatharray.Rd | 2 vignettes/OtherPackagesGallery.Rnw | 322 ++++++++++++++++++------------------- vignettes/xtableGallery.Rnw | 8 20 files changed, 539 insertions(+), 648 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-04-13 0.2
Title: Reading, Extracting, and Converting an Mbox File into a Tibble
Description: Importing and converting an mbox file into a tibble object.
Author: JooYoung Seo [aut, cre] (<https://orcid.org/0000-0002-4064-6012>),
Soyoung Choi [aut] (<https://orcid.org/0000-0002-0998-3352>)
Maintainer: JooYoung Seo <jooyoung@psu.edu>
Diff between mboxr versions 0.1.4 dated 2019-02-24 and 0.1.5 dated 2019-04-21
DESCRIPTION | 18 +++++++++--------- MD5 | 30 +++++++++++++++--------------- NEWS.md | 7 +++++++ R/merge_mbox_all.R | 19 +++++++++++++------ R/read_mbox.R | 31 +++++++++++++++++++------------ README.md | 10 +++++----- build/vignette.rds |binary inst/NEWS | 8 ++++++++ inst/doc/mboxr_vignette.R | 10 +++++----- inst/doc/mboxr_vignette.Rmd | 10 +++++----- inst/doc/mboxr_vignette.html | 19 +++++++++++-------- inst/python/mboxR.py | 8 ++++---- man/mboxr-package.Rd | 6 +++--- man/merge_mbox_all.Rd | 8 ++++---- man/read_mbox.Rd | 8 ++++---- vignettes/mboxr_vignette.Rmd | 10 +++++----- 16 files changed, 117 insertions(+), 85 deletions(-)
Title: Simple Tools for Examining and Cleaning Dirty Data
Description: The main janitor functions can: perfectly format data.frame column
names; provide quick counts of variable combinations (i.e., frequency
tables and crosstabs); and isolate duplicate records. Other janitor functions
nicely format the tabulation results. These tabulate-and-report functions
approximate popular features of SPSS and Microsoft Excel. This package
follows the principles of the "tidyverse" and works well with the pipe function
%>%. janitor was built with beginning-to-intermediate R users in mind and is
optimized for user-friendliness. Advanced R users can already do everything
covered here, but with janitor they can do it faster and save their thinking for
the fun stuff.
Author: Sam Firke [aut, cre],
Bill Denney [ctb],
Chris Haid [ctb],
Ryan Knight [ctb],
Malte Grosser [ctb]
Maintainer: Sam Firke <samuel.firke@gmail.com>
Diff between janitor versions 1.1.1 dated 2018-07-31 and 1.2.0 dated 2019-04-21
janitor-1.1.1/janitor/inst/doc/introduction.R |only janitor-1.1.1/janitor/inst/doc/introduction.Rmd |only janitor-1.1.1/janitor/inst/doc/introduction.html |only janitor-1.2.0/janitor/DESCRIPTION | 19 - janitor-1.2.0/janitor/MD5 | 74 ++-- janitor-1.2.0/janitor/NAMESPACE | 17 janitor-1.2.0/janitor/NEWS.md | 45 ++ janitor-1.2.0/janitor/R/adorn_totals.R | 7 janitor-1.2.0/janitor/R/as_and_untabyl.R | 33 + janitor-1.2.0/janitor/R/clean_names.R | 118 ++---- janitor-1.2.0/janitor/R/compare_df_cols.R |only janitor-1.2.0/janitor/R/excel_dates.R | 59 +-- janitor-1.2.0/janitor/R/make_clean_names.R |only janitor-1.2.0/janitor/R/remove_empties.R | 56 ++- janitor-1.2.0/janitor/R/round_to_fraction.R |only janitor-1.2.0/janitor/R/tabyl.R | 42 +- janitor-1.2.0/janitor/R/tests.R |only janitor-1.2.0/janitor/README.md | 177 ++++++---- janitor-1.2.0/janitor/inst/doc/janitor.R | 22 + janitor-1.2.0/janitor/inst/doc/janitor.Rmd | 56 +++ janitor-1.2.0/janitor/inst/doc/janitor.html | 71 +++- janitor-1.2.0/janitor/inst/doc/tabyls.Rmd | 2 janitor-1.2.0/janitor/inst/doc/tabyls.html | 7 janitor-1.2.0/janitor/man/adorn_totals.Rd | 5 janitor-1.2.0/janitor/man/chisq.test.Rd |only janitor-1.2.0/janitor/man/clean_names.Rd | 18 - janitor-1.2.0/janitor/man/compare_df_cols.Rd |only janitor-1.2.0/janitor/man/compare_df_cols_same.Rd |only janitor-1.2.0/janitor/man/describe_class.Rd |only janitor-1.2.0/janitor/man/excel_numeric_to_date.Rd | 41 +- janitor-1.2.0/janitor/man/fisher.test.Rd |only janitor-1.2.0/janitor/man/make_clean_names.Rd |only janitor-1.2.0/janitor/man/remove_constant.Rd |only janitor-1.2.0/janitor/man/remove_empty.Rd | 15 janitor-1.2.0/janitor/man/round_to_fraction.Rd |only janitor-1.2.0/janitor/tests/testthat/test-add-totals.R | 14 janitor-1.2.0/janitor/tests/testthat/test-adorn-ns.R | 9 janitor-1.2.0/janitor/tests/testthat/test-clean-names.R | 74 ++++ janitor-1.2.0/janitor/tests/testthat/test-compare_df_cols.R |only janitor-1.2.0/janitor/tests/testthat/test-date-conversion.R | 43 +- janitor-1.2.0/janitor/tests/testthat/test-remove-empties.R | 66 +++ janitor-1.2.0/janitor/tests/testthat/test-round_to_fraction.R |only janitor-1.2.0/janitor/tests/testthat/test-tabyl-classifiers.R | 8 janitor-1.2.0/janitor/tests/testthat/test-tabyl.R | 22 + janitor-1.2.0/janitor/tests/testthat/test-tests.R |only janitor-1.2.0/janitor/vignettes/janitor.Rmd | 56 +++ janitor-1.2.0/janitor/vignettes/tabyls.Rmd | 2 47 files changed, 895 insertions(+), 283 deletions(-)
Title: Downloads Box Office Information for Given Dates
Description: Download daily box office information (how much each movie earned
in theaters) using data from either Box Office Mojo (<http://www.boxofficemojo.com/>) or
The Numbers (<http://www.the-numbers.com/>).
Author: Jacob Kaplan [aut, cre]
Maintainer: Jacob Kaplan <jkkaplan6@gmail.com>
Diff between boxoffice versions 1.2.1 dated 2019-01-16 and 1.2.2 dated 2019-04-21
DESCRIPTION | 6 MD5 | 12 NEWS.md | 4 build/vignette.rds |binary inst/doc/get_daily_box_office_info.html | 374 +++++-------------------- inst/doc/top_grossing.html | 474 ++++++++------------------------ tests/testthat/test-top_grossing.R | 20 - 7 files changed, 239 insertions(+), 651 deletions(-)