Title: Unit Testing for R
Description: Software testing is important, but, in part because it is
frustrating and boring, many of us avoid it. 'testthat' is a testing framework
for R that is easy learn and use, and integrates with your existing 'workflow'.
Author: Hadley Wickham [aut, cre],
RStudio [cph, fnd],
R Core team [ctb] (Implementation of utils::recover())
Maintainer: Hadley Wickham <hadley@rstudio.com>
Diff between testthat versions 2.0.1 dated 2018-10-13 and 2.1.0 dated 2019-04-22
testthat-2.0.1/testthat/tests/testthat/test-comparisons.R |only testthat-2.1.0/testthat/DESCRIPTION | 47 - testthat-2.1.0/testthat/MD5 | 331 +++++----- testthat-2.1.0/testthat/NAMESPACE | 13 testthat-2.1.0/testthat/NEWS.md | 135 +++- testthat-2.1.0/testthat/R/auto-test.R | 10 testthat-2.1.0/testthat/R/capture-output.R | 4 testthat-2.1.0/testthat/R/compare.R | 4 testthat-2.1.0/testthat/R/context.R | 5 testthat-2.1.0/testthat/R/example.R |only testthat-2.1.0/testthat/R/expect-comparison.R | 28 testthat-2.1.0/testthat/R/expect-equality.R | 93 -- testthat-2.1.0/testthat/R/expect-inheritance.R | 118 +-- testthat-2.1.0/testthat/R/expect-invisible.R |only testthat-2.1.0/testthat/R/expect-known.R | 14 testthat-2.1.0/testthat/R/expect-length.R | 2 testthat-2.1.0/testthat/R/expect-logical.R | 4 testthat-2.1.0/testthat/R/expect-named.R | 2 testthat-2.1.0/testthat/R/expect-null.R |only testthat-2.1.0/testthat/R/expect-output.R | 75 +- testthat-2.1.0/testthat/R/expect-self-test.R | 4 testthat-2.1.0/testthat/R/expect-setequal.R |only testthat-2.1.0/testthat/R/expect-that.R | 12 testthat-2.1.0/testthat/R/expect-vector.R |only testthat-2.1.0/testthat/R/expectation.R | 214 +----- testthat-2.1.0/testthat/R/expectations-matches.R | 10 testthat-2.1.0/testthat/R/mock.R | 79 +- testthat-2.1.0/testthat/R/old-school.R | 20 testthat-2.1.0/testthat/R/praise.R | 4 testthat-2.1.0/testthat/R/quasi-label.R |only testthat-2.1.0/testthat/R/reporter-check.R | 6 testthat-2.1.0/testthat/R/reporter-junit.R | 18 testthat-2.1.0/testthat/R/reporter-list.R | 11 testthat-2.1.0/testthat/R/reporter-multi.R | 6 testthat-2.1.0/testthat/R/reporter-progress.R | 51 + testthat-2.1.0/testthat/R/reporter-zzz.R | 29 testthat-2.1.0/testthat/R/reporter.R | 45 - testthat-2.1.0/testthat/R/skip.R | 28 testthat-2.1.0/testthat/R/source.R | 19 testthat-2.1.0/testthat/R/test-compiled-code.R | 2 testthat-2.1.0/testthat/R/test-directory.R | 32 testthat-2.1.0/testthat/R/test-files.R | 42 - testthat-2.1.0/testthat/R/test-that.R | 4 testthat-2.1.0/testthat/R/utils.R | 12 testthat-2.1.0/testthat/README.md | 75 +- testthat-2.1.0/testthat/build/vignette.rds |binary testthat-2.1.0/testthat/inst/doc/custom-expectation.R | 16 testthat-2.1.0/testthat/inst/doc/custom-expectation.Rmd | 23 testthat-2.1.0/testthat/inst/doc/custom-expectation.html | 66 + testthat-2.1.0/testthat/inst/examples |only testthat-2.1.0/testthat/inst/include/testthat/testthat.h | 10 testthat-2.1.0/testthat/inst/include/testthat/vendor/catch.h | 2 testthat-2.1.0/testthat/man/CheckReporter.Rd | 3 testthat-2.1.0/testthat/man/DebugReporter.Rd | 3 testthat-2.1.0/testthat/man/FailReporter.Rd | 3 testthat-2.1.0/testthat/man/ListReporter.Rd | 3 testthat-2.1.0/testthat/man/LocationReporter.Rd | 3 testthat-2.1.0/testthat/man/MinimalReporter.Rd | 3 testthat-2.1.0/testthat/man/MultiReporter.Rd | 3 testthat-2.1.0/testthat/man/ProgressReporter.Rd | 3 testthat-2.1.0/testthat/man/Reporter.Rd | 40 + testthat-2.1.0/testthat/man/RstudioReporter.Rd | 3 testthat-2.1.0/testthat/man/SilentReporter.Rd | 3 testthat-2.1.0/testthat/man/StopReporter.Rd | 3 testthat-2.1.0/testthat/man/SummaryReporter.Rd | 3 testthat-2.1.0/testthat/man/TapReporter.Rd | 3 testthat-2.1.0/testthat/man/TeamcityReporter.Rd | 3 testthat-2.1.0/testthat/man/auto_test_package.Rd | 3 testthat-2.1.0/testthat/man/capture_output.Rd | 4 testthat-2.1.0/testthat/man/comparison-expectations.Rd | 17 testthat-2.1.0/testthat/man/context.Rd | 6 testthat-2.1.0/testthat/man/default_reporter.Rd | 8 testthat-2.1.0/testthat/man/equality-expectations.Rd | 48 - testthat-2.1.0/testthat/man/expect.Rd | 21 testthat-2.1.0/testthat/man/expect_invisible.Rd |only testthat-2.1.0/testthat/man/expect_is.Rd |only testthat-2.1.0/testthat/man/expect_known_output.Rd | 30 testthat-2.1.0/testthat/man/expect_length.Rd | 7 testthat-2.1.0/testthat/man/expect_match.Rd | 22 testthat-2.1.0/testthat/man/expect_named.Rd | 18 testthat-2.1.0/testthat/man/expect_null.Rd |only testthat-2.1.0/testthat/man/expect_setequal.Rd |only testthat-2.1.0/testthat/man/expect_success.Rd | 2 testthat-2.1.0/testthat/man/expect_that.Rd | 12 testthat-2.1.0/testthat/man/expect_vector.Rd |only testthat-2.1.0/testthat/man/expectation.Rd | 11 testthat-2.1.0/testthat/man/inheritance-expectations.Rd | 68 -- testthat-2.1.0/testthat/man/logical-expectations.Rd | 15 testthat-2.1.0/testthat/man/output-expectations.Rd | 28 testthat-2.1.0/testthat/man/quasi_label.Rd | 14 testthat-2.1.0/testthat/man/reporter-accessors.Rd | 26 testthat-2.1.0/testthat/man/skip.Rd | 14 testthat-2.1.0/testthat/man/source_file.Rd | 36 - testthat-2.1.0/testthat/man/test_dir.Rd | 37 - testthat-2.1.0/testthat/man/test_file.Rd | 41 - testthat-2.1.0/testthat/man/testthat_examples.Rd |only testthat-2.1.0/testthat/man/with_mock.Rd | 19 testthat-2.1.0/testthat/src/test-catch.cpp | 4 testthat-2.1.0/testthat/tests/test-catch.R | 12 testthat-2.1.0/testthat/tests/testthat/helper-junitmock.R | 31 testthat-2.1.0/testthat/tests/testthat/reporters/check.txt | 80 +- testthat-2.1.0/testthat/tests/testthat/reporters/debug.txt | 94 +- testthat-2.1.0/testthat/tests/testthat/reporters/junit.txt | 69 +- testthat-2.1.0/testthat/tests/testthat/reporters/location.txt | 38 - testthat-2.1.0/testthat/tests/testthat/reporters/minimal.txt | 2 testthat-2.1.0/testthat/tests/testthat/reporters/progress.txt | 152 ++-- testthat-2.1.0/testthat/tests/testthat/reporters/rstudio.txt | 26 testthat-2.1.0/testthat/tests/testthat/reporters/summary-2.txt | 20 testthat-2.1.0/testthat/tests/testthat/reporters/summary-no-dots.txt | 78 +- testthat-2.1.0/testthat/tests/testthat/reporters/summary.txt | 80 +- testthat-2.1.0/testthat/tests/testthat/reporters/tap.txt | 83 +- testthat-2.1.0/testthat/tests/testthat/reporters/teamcity.txt | 19 testthat-2.1.0/testthat/tests/testthat/reporters/tests.R | 7 testthat-2.1.0/testthat/tests/testthat/test-bare.R | 2 testthat-2.1.0/testthat/tests/testthat/test-catch.R | 2 testthat-2.1.0/testthat/tests/testthat/test-colour.R | 2 testthat-2.1.0/testthat/tests/testthat/test-compare-character.R | 2 testthat-2.1.0/testthat/tests/testthat/test-compare-numeric.R | 2 testthat-2.1.0/testthat/tests/testthat/test-compare-time.R | 2 testthat-2.1.0/testthat/tests/testthat/test-compare.R | 18 testthat-2.1.0/testthat/tests/testthat/test-context.R | 2 testthat-2.1.0/testthat/tests/testthat/test-cpp.R | 1 testthat-2.1.0/testthat/tests/testthat/test-debug-reporter.R | 2 testthat-2.1.0/testthat/tests/testthat/test-describe.R | 4 testthat-2.1.0/testthat/tests/testthat/test-environment.R | 2 testthat-2.1.0/testthat/tests/testthat/test-error/test-error.R | 2 testthat-2.1.0/testthat/tests/testthat/test-evaluate-promise.R | 3 testthat-2.1.0/testthat/tests/testthat/test-examples.R | 6 testthat-2.1.0/testthat/tests/testthat/test-expect-comparison.R |only testthat-2.1.0/testthat/tests/testthat/test-expect-equality.R | 14 testthat-2.1.0/testthat/tests/testthat/test-expect-error.R | 9 testthat-2.1.0/testthat/tests/testthat/test-expect-error.txt | 10 testthat-2.1.0/testthat/tests/testthat/test-expect-inheritance.R | 7 testthat-2.1.0/testthat/tests/testthat/test-expect-invisible.R |only testthat-2.1.0/testthat/tests/testthat/test-expect-known-hash.R | 2 testthat-2.1.0/testthat/tests/testthat/test-expect-known-output.R | 2 testthat-2.1.0/testthat/tests/testthat/test-expect-known-value.R | 20 testthat-2.1.0/testthat/tests/testthat/test-expect-length.R | 2 testthat-2.1.0/testthat/tests/testthat/test-expect-logical.R | 2 testthat-2.1.0/testthat/tests/testthat/test-expect-match.R | 19 testthat-2.1.0/testthat/tests/testthat/test-expect-message.R | 2 testthat-2.1.0/testthat/tests/testthat/test-expect-named.R | 2 testthat-2.1.0/testthat/tests/testthat/test-expect-null.R | 2 testthat-2.1.0/testthat/tests/testthat/test-expect-output.R | 18 testthat-2.1.0/testthat/tests/testthat/test-expect-reference.R | 2 testthat-2.1.0/testthat/tests/testthat/test-expect-self-test.R | 23 testthat-2.1.0/testthat/tests/testthat/test-expect-setequal.R |only testthat-2.1.0/testthat/tests/testthat/test-expect-silent.R | 2 testthat-2.1.0/testthat/tests/testthat/test-expect-vector.R |only testthat-2.1.0/testthat/tests/testthat/test-expect-warning.R | 2 testthat-2.1.0/testthat/tests/testthat/test-expect-warning.txt | 8 testthat-2.1.0/testthat/tests/testthat/test-expect_that.R | 2 testthat-2.1.0/testthat/tests/testthat/test-expectation.R |only testthat-2.1.0/testthat/tests/testthat/test-helpers.R | 2 testthat-2.1.0/testthat/tests/testthat/test-label.R | 2 testthat-2.1.0/testthat/tests/testthat/test-make-expectation.R |only testthat-2.1.0/testthat/tests/testthat/test-mock.R | 15 testthat-2.1.0/testthat/tests/testthat/test-old-school.R | 11 testthat-2.1.0/testthat/tests/testthat/test-reporter-junit.R |only testthat-2.1.0/testthat/tests/testthat/test-reporter-list.R | 2 testthat-2.1.0/testthat/tests/testthat/test-reporter-multi.R | 2 testthat-2.1.0/testthat/tests/testthat/test-reporter-zzz.R |only testthat-2.1.0/testthat/tests/testthat/test-reporter.R | 166 +---- testthat-2.1.0/testthat/tests/testthat/test-skip.R | 59 + testthat-2.1.0/testthat/tests/testthat/test-source.R | 2 testthat-2.1.0/testthat/tests/testthat/test-source_dir.R | 2 testthat-2.1.0/testthat/tests/testthat/test-teardown-1.R | 2 testthat-2.1.0/testthat/tests/testthat/test-teardown-2.R | 2 testthat-2.1.0/testthat/tests/testthat/test-test-path.R | 2 testthat-2.1.0/testthat/tests/testthat/test-test-that.R | 2 testthat-2.1.0/testthat/tests/testthat/test-test_dir.R | 9 testthat-2.1.0/testthat/tests/testthat/test-try-again.R | 2 testthat-2.1.0/testthat/tests/testthat/test-warning/test-warning.R | 2 testthat-2.1.0/testthat/tests/testthat/test-watcher.R | 6 testthat-2.1.0/testthat/tests/testthat/test_dir.rds |binary testthat-2.1.0/testthat/tests/testthat/utf8.R | 2 testthat-2.1.0/testthat/vignettes/custom-expectation.Rmd | 23 177 files changed, 2136 insertions(+), 1490 deletions(-)
Title: Computational Geometry
Description: R interface to (some of) cddlib
(<http://www.ifor.math.ethz.ch/~fukuda/cdd_home/cdd.html>).
Converts back and forth between two representations of a convex polytope:
as solution of a set of linear equalities and inequalities and as
convex hull of set of points and rays.
Also does linear programming and redundant generator elimination
(for example, convex hull in n dimensions). All functions can use exact
infinite-precision rational arithmetic.
Author: Charles J. Geyer <charlie@stat.umn.edu> and
Glen D. Meeden <glen@stat.umn.edu>, incorporates code from
cddlib (ver 0.94f) written by Komei Fukuda <fukuda@ifor.math.ethz.ch>
Maintainer: Charles J. Geyer <charlie@stat.umn.edu>
Diff between rcdd versions 1.2 dated 2017-06-12 and 1.2-2 dated 2019-04-22
CHANGES | 6 ++++++ DESCRIPTION | 8 ++++---- MD5 | 30 +++++++++++++++--------------- build/vignette.rds |binary inst/doc/vinny.pdf |binary man/validcdd.Rd | 2 +- src/cddlp.c | 12 +++++++----- src/cddlp_f.c | 10 ++++++---- src/redund.c | 2 +- src/redund_f.c | 2 +- src/scdd.c | 2 +- src/scdd_f.c | 2 +- src/setoper.c | 23 +++++++++++++++++++---- tests/arith.Rout.save | 7 +++---- tests/lpcdd.R | 4 ++++ tests/lpcdd.Rout.save | 10 +++++++--- 16 files changed, 76 insertions(+), 44 deletions(-)
Title: Trees Creation and Manipulation
Description: Functions and classes to create and manipulate trees and nodes.
Author: Paul Poncet [aut, cre]
Maintainer: Paul Poncet <paulponcet@yahoo.fr>
Diff between oak versions 0.2.1 dated 2018-11-06 and 0.2.3 dated 2019-04-22
DESCRIPTION | 10 +++++----- MD5 | 30 +++++++++++++++--------------- NAMESPACE | 8 ++++---- NEWS.md | 5 ++++- R/ancestors.R | 2 +- R/flatten.R | 2 +- R/leaves.R | 2 +- R/parent.R | 4 ++-- R/reexports.R | 8 ++++---- R/siblings.R | 2 +- R/take.R | 6 +++--- R/tree.R | 23 +++++++++++++++++++++-- R/tree_apply.R | 6 +++--- README.md | 3 +-- man/reexports.Rd | 3 --- man/rtree.Rd | 10 ++++++++-- 16 files changed, 74 insertions(+), 50 deletions(-)
Title: Tidy Quantitative Financial Analysis
Description: Bringing financial analysis to the 'tidyverse'. The 'tidyquant'
package provides a convenient wrapper to various 'xts', 'zoo', 'quantmod', 'TTR'
and 'PerformanceAnalytics' package
functions and returns the objects in the tidy 'tibble' format. The main
advantage is being able to use quantitative functions with the 'tidyverse'
functions including 'purrr', 'dplyr', 'tidyr', 'ggplot2', 'lubridate', etc. See
the 'tidyquant' website for more information, documentation and examples.
Author: Matt Dancho [aut, cre],
Davis Vaughan [aut]
Maintainer: Matt Dancho <mdancho@business-science.io>
Diff between tidyquant versions 0.5.5 dated 2018-05-09 and 0.5.6 dated 2019-04-22
DESCRIPTION | 12 MD5 | 46 - NEWS.md | 6 R/tq_get.R | 576 ++++++++--------- R/tq_stock_list.R | 14 build/vignette.rds |binary inst/doc/TQ00-introduction-to-tidyquant.html | 11 inst/doc/TQ01-core-functions-in-tidyquant.R | 30 inst/doc/TQ01-core-functions-in-tidyquant.Rmd | 33 inst/doc/TQ01-core-functions-in-tidyquant.html | 429 ++++++------ inst/doc/TQ02-quant-integrations-in-tidyquant.html | 75 +- inst/doc/TQ03-scaling-and-modeling-with-tidyquant.html | 241 +++---- inst/doc/TQ04-charting-with-tidyquant.html | 71 +- inst/doc/TQ05-performance-analysis-with-tidyquant.html | 223 +++--- man/deprecated.Rd | 3 man/geom_bbands.Rd | 14 man/geom_ma.Rd | 5 man/quandl_api_key.Rd | 1 man/quandl_search.Rd | 1 man/theme_tq.Rd | 1 man/tq_get.Rd | 4 man/tq_mutate.Rd | 1 tests/testthat/test_tq_get_key_ratios.R | 70 +- vignettes/TQ01-core-functions-in-tidyquant.Rmd | 33 24 files changed, 1003 insertions(+), 897 deletions(-)
Title: Optimal Stratification of Sampling Frames for Multipurpose
Sampling Surveys
Description: In the field of stratified sampling design, this package offers an approach for the determination of the best stratification of a sampling frame, the one that ensures the minimum sample cost under the condition to satisfy precision constraints in a multivariate and multidomain case. This approach is based on the use of the genetic algorithm: each solution (i.e. a particular partition in strata of the sampling frame) is considered as an individual in a population; the fitness of all individuals is evaluated applying the Bethel-Chromy algorithm to calculate the sampling size satisfying precision constraints on the target estimates. Functions in the package allows to: (a) analyse the obtained results of the optimisation step; (b) assign the new strata labels to the sampling frame; (c) select a sample from the new frame accordingly to the best allocation. Functions for the execution of the genetic algorithm are a modified version of the functions in the 'genalg' package.
Author: Giulio Barcaroli, Marco Ballin, Hanjo Odendaal, Daniela Pagliuca, Egon Willighagen, Diego Zardetto
Maintainer: Giulio Barcaroli <gbarcaroli@gmail.com>
Diff between SamplingStrata versions 1.4 dated 2019-01-02 and 1.4-1 dated 2019-04-22
DESCRIPTION | 31 MD5 | 89 - NAMESPACE | 2 NEWS | 11 R/assignStrataLabel.R |only R/buildStrataDF.R |only R/buildStrataDF_opt2.R | 18 R/optimizeStrata2.R | 4 R/strataGenalg2.R | 4 R/summaryStrata2.R |only build/vignette.rds |binary inst/doc/SamplingStrata.R | 10 inst/doc/SamplingStrata.Rmd | 23 inst/doc/SamplingStrata.bib |only inst/doc/SamplingStrata.html | 2984 ++++++++++++++++++---------------------- man/assignStrataLabel.Rd |only man/figures |only man/optimizeStrata2.Rd | 2 man/summaryStrata.Rd |only vignettes/SamplingStrata.Rmd | 23 vignettes/output/outstrata.txt | 118 - vignettes/output/outstrata1.txt | 17 vignettes/output/outstrata2.txt | 31 vignettes/output/outstrata3.txt | 13 vignettes/output/outstrata4.txt | 7 vignettes/output/outstrata5.txt | 24 vignettes/output/outstrata6.txt | 10 vignettes/output/outstrata7.txt | 16 vignettes/output/plotdom1.png |binary vignettes/output/plotdom2.png |binary vignettes/output/plotdom3.png |binary vignettes/output/plotdom4.png |binary vignettes/output/plotdom5.png |binary vignettes/output/plotdom6.png |binary vignettes/output/plotdom7.png |binary vignettes/output/results1.txt | 10 vignettes/output/results2.txt | 10 vignettes/output/results3.txt | 10 vignettes/output/results4.txt | 10 vignettes/output/results5.txt | 10 vignettes/output/results6.txt | 10 vignettes/output/results7.txt | 10 vignettes/output/solution1.txt | 106 - vignettes/output/solution2.txt | 88 - vignettes/output/solution3.txt | 56 vignettes/output/solution4.txt | 42 vignettes/output/solution5.txt | 74 vignettes/output/solution6.txt | 62 vignettes/output/solution7.txt | 34 49 files changed, 1903 insertions(+), 2066 deletions(-)
More information about SamplingStrata at CRAN
Permanent link
Title: Fast Unified Random Forests for Survival, Regression, and
Classification (RF-SRC)
Description: Fast OpenMP parallel computing of Breiman's random forests for survival, competing risks, regression and classification based on Ishwaran and Kogalur's popular random survival forests (RSF) package. Handles missing data and now includes multivariate, unsupervised forests, quantile regression and solutions for class imbalanced data. New fast interface using subsampling and confidence regions for variable importance.
Author: Hemant Ishwaran <hemant.ishwaran@gmail.com>, Udaya B. Kogalur <ubk@kogalur.com>
Maintainer: Udaya B. Kogalur <ubk@kogalur.com>
Diff between randomForestSRC versions 2.8.0 dated 2019-01-02 and 2.9.0 dated 2019-04-22
randomForestSRC-2.8.0/randomForestSRC/R/cindex.R |only randomForestSRC-2.8.0/randomForestSRC/R/holdoutvimp.rfsrc.R |only randomForestSRC-2.8.0/randomForestSRC/R/quantileReg.rfsrc.R |only randomForestSRC-2.8.0/randomForestSRC/R/rfsrcFast.rfsrc.R |only randomForestSRC-2.8.0/randomForestSRC/R/rfsrcSyn.rfsrc.R |only randomForestSRC-2.8.0/randomForestSRC/man/holdoutvimp.rfsrc.Rd |only randomForestSRC-2.8.0/randomForestSRC/man/quantileReg.rfsrc.Rd |only randomForestSRC-2.8.0/randomForestSRC/man/rfsrcFast.Rd |only randomForestSRC-2.8.0/randomForestSRC/man/rfsrcSyn.Rd |only randomForestSRC-2.9.0/randomForestSRC/DESCRIPTION | 18 randomForestSRC-2.9.0/randomForestSRC/MD5 | 132 randomForestSRC-2.9.0/randomForestSRC/NAMESPACE | 61 randomForestSRC-2.9.0/randomForestSRC/R/data.utilities.R | 619 randomForestSRC-2.9.0/randomForestSRC/R/generic.impute.rfsrc.R | 2 randomForestSRC-2.9.0/randomForestSRC/R/generic.predict.rfsrc.R | 60 randomForestSRC-2.9.0/randomForestSRC/R/holdout.vimp.rfsrc.R |only randomForestSRC-2.9.0/randomForestSRC/R/imbalanced.rfsrc.R | 31 randomForestSRC-2.9.0/randomForestSRC/R/partial.rfsrc.R | 39 randomForestSRC-2.9.0/randomForestSRC/R/plot.competing.risk.rfsrc.R | 21 randomForestSRC-2.9.0/randomForestSRC/R/plot.quantreg.rfsrc.R |only randomForestSRC-2.9.0/randomForestSRC/R/plot.subsample.rfsrc.R | 46 randomForestSRC-2.9.0/randomForestSRC/R/plot.survival.rfsrc.R | 422 randomForestSRC-2.9.0/randomForestSRC/R/plot.variable.rfsrc.R | 156 randomForestSRC-2.9.0/randomForestSRC/R/predict.rfsrc.R | 4 randomForestSRC-2.9.0/randomForestSRC/R/print.rfsrc.R | 28 randomForestSRC-2.9.0/randomForestSRC/R/quantreg.rfsrc.R |only randomForestSRC-2.9.0/randomForestSRC/R/rfsrc.R | 142 randomForestSRC-2.9.0/randomForestSRC/R/rfsrc.cart.R |only randomForestSRC-2.9.0/randomForestSRC/R/rfsrc.fast.R |only randomForestSRC-2.9.0/randomForestSRC/R/sgreedy.cart.R |only randomForestSRC-2.9.0/randomForestSRC/R/sgreedy.rfsrc.R |only randomForestSRC-2.9.0/randomForestSRC/R/subsample.rfsrc.R | 58 randomForestSRC-2.9.0/randomForestSRC/R/synthetic.rfsrc.R |only randomForestSRC-2.9.0/randomForestSRC/R/tune.nodesize.rfsrc.R |only randomForestSRC-2.9.0/randomForestSRC/R/tune.rfsrc.R | 11 randomForestSRC-2.9.0/randomForestSRC/R/utilities.R | 123 randomForestSRC-2.9.0/randomForestSRC/R/vimp.rfsrc.R | 2 randomForestSRC-2.9.0/randomForestSRC/configure | 18 randomForestSRC-2.9.0/randomForestSRC/configure.ac | 2 randomForestSRC-2.9.0/randomForestSRC/data/breast.rda |binary randomForestSRC-2.9.0/randomForestSRC/data/follic.rda |binary randomForestSRC-2.9.0/randomForestSRC/data/hd.rda |binary randomForestSRC-2.9.0/randomForestSRC/data/housing.rda |binary randomForestSRC-2.9.0/randomForestSRC/data/nutrigenomic.rda |binary randomForestSRC-2.9.0/randomForestSRC/data/pbc.rda |binary randomForestSRC-2.9.0/randomForestSRC/data/vdv.rda |binary randomForestSRC-2.9.0/randomForestSRC/data/veteran.rda |binary randomForestSRC-2.9.0/randomForestSRC/data/wihs.rda |binary randomForestSRC-2.9.0/randomForestSRC/data/wine.rda |binary randomForestSRC-2.9.0/randomForestSRC/inst/NEWS | 13 randomForestSRC-2.9.0/randomForestSRC/man/find.interaction.rfsrc.Rd | 9 randomForestSRC-2.9.0/randomForestSRC/man/holdout.vimp.rfsrc.Rd |only randomForestSRC-2.9.0/randomForestSRC/man/imbalanced.rfsrc.Rd | 123 randomForestSRC-2.9.0/randomForestSRC/man/impute.rfsrc.Rd | 6 randomForestSRC-2.9.0/randomForestSRC/man/max.subtree.rfsrc.Rd | 10 randomForestSRC-2.9.0/randomForestSRC/man/partial.rfsrc.Rd | 2 randomForestSRC-2.9.0/randomForestSRC/man/plot.competing.risk.rfsrc.Rd | 26 randomForestSRC-2.9.0/randomForestSRC/man/plot.quantreg.rfsrc.Rd |only randomForestSRC-2.9.0/randomForestSRC/man/plot.rfsrc.Rd | 4 randomForestSRC-2.9.0/randomForestSRC/man/plot.subsample.rfsrc.Rd | 9 randomForestSRC-2.9.0/randomForestSRC/man/plot.survival.rfsrc.Rd | 76 randomForestSRC-2.9.0/randomForestSRC/man/plot.variable.rfsrc.Rd | 6 randomForestSRC-2.9.0/randomForestSRC/man/predict.rfsrc.Rd | 177 randomForestSRC-2.9.0/randomForestSRC/man/print.rfsrc.Rd | 4 randomForestSRC-2.9.0/randomForestSRC/man/quantreg.rfsrc.Rd |only randomForestSRC-2.9.0/randomForestSRC/man/randomForestSRC_package.Rd | 129 randomForestSRC-2.9.0/randomForestSRC/man/rfsrc.Rd | 890 - randomForestSRC-2.9.0/randomForestSRC/man/rfsrc.fast.Rd |only randomForestSRC-2.9.0/randomForestSRC/man/sgreedy.Rd |only randomForestSRC-2.9.0/randomForestSRC/man/stat.split.rfsrc.Rd | 4 randomForestSRC-2.9.0/randomForestSRC/man/subsample.rfsrc.Rd | 68 randomForestSRC-2.9.0/randomForestSRC/man/synthetic.rfsrc.Rd |only randomForestSRC-2.9.0/randomForestSRC/man/tune.rfsrc.Rd | 65 randomForestSRC-2.9.0/randomForestSRC/man/var.select.rfsrc.Rd | 11 randomForestSRC-2.9.0/randomForestSRC/man/vimp.rfsrc.Rd | 8 randomForestSRC-2.9.0/randomForestSRC/man/wine.Rd | 6 randomForestSRC-2.9.0/randomForestSRC/src/randomForestSRC.c | 6928 ++++------ randomForestSRC-2.9.0/randomForestSRC/src/randomForestSRC.h | 822 - randomForestSRC-2.9.0/randomForestSRC/src/splitCustom.c | 18 79 files changed, 5140 insertions(+), 6269 deletions(-)
More information about randomForestSRC at CRAN
Permanent link
Title: Fast Pseudo Random Number Generators
Description: Several fast random number generators are provided as C++
header only libraries: The PCG family by O'Neill (2014
<https://www.cs.hmc.edu/tr/hmc-cs-2014-0905.pdf>) as well as
Xoroshiro128+ and Xoshiro256+ by Blackman and Vigna (2018
<arXiv:1805.01407>). In addition fast functions for generating random
numbers according to a uniform, normal and exponential distribution
are included. The latter two use the Ziggurat algorithm originally
proposed by Marsaglia and Tsang (2000, <doi:10.18637/jss.v005.i08>).
These functions are exported to R and as a C++ interface and are
enabled for use with the default 64 bit generator from the PCG family,
Xoroshiro128+ and Xoshiro256+ as well as the 64 bit version of the 20 rounds
Threefry engine (Salmon et al., 2011 <doi:10.1145/2063384.2063405>) as
provided by the package 'sitmo'.
Author: Ralf Stubner [aut, cre],
daqana GmbH [cph],
David Blackman [ctb],
Melissa O'Neill [ctb],
Sebastiano Vigna [ctb],
Aaron Lun [ctb]
Maintainer: Ralf Stubner <ralf.stubner@daqana.com>
Diff between dqrng versions 0.1.1 dated 2019-03-11 and 0.2.0 dated 2019-04-22
DESCRIPTION | 6 MD5 | 60 +++--- NAMESPACE | 2 NEWS.md | 16 + R/RcppExports.R | 24 ++ R/dqsample.R |only R/dqset.seed.R | 11 + README.md | 72 +++++++- build/vignette.rds |binary inst/doc/cpp-api.R |only inst/doc/cpp-api.Rmd |only inst/doc/cpp-api.html |only inst/doc/dqrng.R | 6 inst/doc/dqrng.Rmd | 57 +++++- inst/doc/dqrng.html | 333 ++++++++++++++++++++------------------ inst/doc/parallel.R | 16 + inst/doc/parallel.Rmd | 85 ++++++--- inst/doc/parallel.html | 232 +++++++++++++++----------- inst/include/R_randgen.h | 13 - inst/include/dqrng_RcppExports.h | 108 +++++++++++- inst/include/dqrng_distribution.h | 10 - inst/include/dqrng_generator.h | 135 ++++++++++++++- inst/include/minimal_int_set.h |only inst/include/xoshiro.h | 59 ++++++ man/dqrng-functions.Rd | 10 + man/dqsample.Rd |only src/RcppExports.cpp | 205 ++++++++++++++++++++++- src/dqrng.cpp | 149 +++++++++++++++-- tests/testthat/cpp/default.cpp | 26 ++ tests/testthat/test-cpp.R | 12 + tests/testthat/test-generators.R | 90 ++++++++++ tests/testthat/test-sample.R |only vignettes/cpp-api.Rmd |only vignettes/dqrng.Rmd | 57 +++++- vignettes/parallel.Rmd | 85 ++++++--- 35 files changed, 1475 insertions(+), 404 deletions(-)
Title: Functions to Work with NCBI Accessions and Taxonomy
Description: Functions for assigning taxonomy to NCBI accession numbers and taxon IDs based on NCBI's accession2taxid and taxdump files. This package allows the user to downloads NCBI data dumps and create a local database for fast and local taxonomic assignment.
Author: Scott Sherrill-Mix [aut, cre]
Maintainer: Scott Sherrill-Mix <shescott@upenn.edu>
Diff between taxonomizr versions 0.5.1 dated 2018-08-31 and 0.5.3 dated 2019-04-22
taxonomizr-0.5.1/taxonomizr/vignettes/usage.md |only taxonomizr-0.5.3/taxonomizr/DESCRIPTION | 12 taxonomizr-0.5.3/taxonomizr/MD5 | 33 taxonomizr-0.5.3/taxonomizr/R/taxa.R | 12 taxonomizr-0.5.3/taxonomizr/README.md | 113 +- taxonomizr-0.5.3/taxonomizr/inst/doc/usage.R | 2 taxonomizr-0.5.3/taxonomizr/inst/doc/usage.Rmd | 113 +- taxonomizr-0.5.3/taxonomizr/inst/doc/usage.html | 657 +++++++++++----- taxonomizr-0.5.3/taxonomizr/man/getAccession2taxid.Rd | 2 taxonomizr-0.5.3/taxonomizr/man/getAccessions.Rd | 3 taxonomizr-0.5.3/taxonomizr/man/getTaxonomy2.Rd | 6 taxonomizr-0.5.3/taxonomizr/man/prepareDatabase.Rd | 4 taxonomizr-0.5.3/taxonomizr/man/read.accession2taxid.Rd | 4 taxonomizr-0.5.3/taxonomizr/man/read.names.sql.Rd | 3 taxonomizr-0.5.3/taxonomizr/man/read.nodes.sql.Rd | 3 taxonomizr-0.5.3/taxonomizr/man/streamingRead.Rd | 4 taxonomizr-0.5.3/taxonomizr/tests/testthat/test_taxa.R | 12 taxonomizr-0.5.3/taxonomizr/vignettes/usage.Rmd | 113 +- 18 files changed, 741 insertions(+), 355 deletions(-)
Title: Subgroup Treatment Effect Estimation in Clinical Trials
Description: Naive and adjusted treatment effect estimation for subgroups. Model
averaging (Bornkamp et.al, 2016 <doi:10.1002/pst.1796>) and bagging (Rosenkranz, 2016 <doi:10.1002/bimj.201500147>) are proposed to address the problem of selection bias in
treatment effect estimates for subgroups. The package can be used for all
commonly encountered type of outcomes in clinical trials (continuous, binary,
survival, count). Additional functions are provided to build the subgroup
variables to be used and to plot the results using forest plots.
Author: Nicolas Ballarini [aut, cre],
Bjoern Bornkamp [aut],
Marius Thomas [aut, cre],
Baldur Magnusson [ctb]
Maintainer: Nicolas Ballarini <nicolas.ballarini@meduniwien.ac.at>
Diff between subtee versions 0.3-4 dated 2019-01-07 and 0.3-5 dated 2019-04-22
DESCRIPTION | 8 - MD5 | 28 ++--- NAMESPACE | 3 NEWS.md | 9 + R/bagged.R | 196 ++++++++++++++++++--------------------- R/generic-funcs-subtee-add.R |only R/generic-funcs-subtee.R | 18 ++- R/modav.R | 93 +----------------- R/plot-funcs.R | 4 inst/doc/plotting_functions.html | 4 inst/doc/subbuild_function.html | 4 inst/doc/subtee_package.R | 2 inst/doc/subtee_package.Rmd | 2 inst/doc/subtee_package.html | 19 +-- man/confint.subtee.Rd |only vignettes/subtee_package.Rmd | 2 16 files changed, 160 insertions(+), 232 deletions(-)
Title: Web Application Framework for R
Description: Makes it incredibly easy to build interactive web
applications with R. Automatic "reactive" binding between inputs and
outputs and extensive prebuilt widgets make it possible to build
beautiful, responsive, and powerful applications with minimal effort.
Author: Winston Chang [aut, cre],
Joe Cheng [aut],
JJ Allaire [aut],
Yihui Xie [aut],
Jonathan McPherson [aut],
RStudio [cph],
jQuery Foundation [cph] (jQuery library and jQuery UI library),
jQuery contributors [ctb, cph] (jQuery library; authors listed in
inst/www/shared/jquery-AUTHORS.txt),
jQuery UI contributors [ctb, cph] (jQuery UI library; authors listed in
inst/www/shared/jqueryui/AUTHORS.txt),
Mark Otto [ctb] (Bootstrap library),
Jacob Thornton [ctb] (Bootstrap library),
Bootstrap contributors [ctb] (Bootstrap library),
Twitter, Inc [cph] (Bootstrap library),
Alexander Farkas [ctb, cph] (html5shiv library),
Scott Jehl [ctb, cph] (Respond.js library),
Stefan Petre [ctb, cph] (Bootstrap-datepicker library),
Andrew Rowls [ctb, cph] (Bootstrap-datepicker library),
Dave Gandy [ctb, cph] (Font-Awesome font),
Brian Reavis [ctb, cph] (selectize.js library),
Kristopher Michael Kowal [ctb, cph] (es5-shim library),
es5-shim contributors [ctb, cph] (es5-shim library),
Denis Ineshin [ctb, cph] (ion.rangeSlider library),
Sami Samhuri [ctb, cph] (Javascript strftime library),
SpryMedia Limited [ctb, cph] (DataTables library),
John Fraser [ctb, cph] (showdown.js library),
John Gruber [ctb, cph] (showdown.js library),
Ivan Sagalaev [ctb, cph] (highlight.js library),
R Core Team [ctb, cph] (tar implementation from R)
Maintainer: Winston Chang <winston@rstudio.com>
Diff between shiny versions 1.3.1 dated 2019-04-12 and 1.3.2 dated 2019-04-22
DESCRIPTION | 6 ++-- MD5 | 12 ++++---- NEWS.md | 14 ++++----- R/app.R | 16 +++++++++-- R/server.R | 61 ++++++++++++++++++++++++++++++++++++++++++- inst/www/shared/shiny.js | 2 - inst/www/shared/shiny.min.js | 4 +- 7 files changed, 93 insertions(+), 22 deletions(-)
Title: Soft-Discretization-Based Bayesian Network Inference
Description: Fitting discrete Bayesian networks using soft-discretized data. Soft-discretization is based on mixture of normal distributions. Also implemented is a supervised Bayesian network learning employing Kullback-Leibler divergence. For more information see Balov (2013) <DOI:10.1186/1755-8794-6-S3-S1>.
Author: Nikolay Balov
Maintainer: Nikolay Balov <nhbalov@gmail.com>
Diff between sdnet versions 2.3.8 dated 2016-05-09 and 2.4.0 dated 2019-04-22
DESCRIPTION | 8 ++--- MD5 | 66 +++++++++++++++++++++--------------------- NAMESPACE | 2 - R/def.R | 12 +++---- R/joint.prob.R | 4 +- src/cache.cpp | 2 - src/cache.h | 2 - src/catnet_base.h | 4 +- src/catnet_entropy.cpp | 2 - src/catnet_quant.cpp | 2 - src/catnet_rexport.cpp | 55 ++++++++++++++++------------------- src/catnet_rexport.h | 2 - src/catnet_search.h | 2 - src/catnetd.h | 2 - src/catnetp.h | 2 - src/ccnInit.c | 3 + src/dag_list.h | 2 - src/dag_search.h | 2 - src/dag_search_dc.h | 2 - src/problist.h | 2 - src/pthread.cpp | 2 - src/rcatnet.cpp | 76 ++++++++++++++++++++++++++----------------------- src/rcatnet.h | 2 - src/rcatnet_hist.cpp | 2 - src/rcatnet_hist.h | 2 - src/rcatnet_prob.cpp | 2 - src/rcatnet_sa.cpp | 2 - src/rcatnet_sa.h | 2 - src/rcatnet_search.cpp | 2 - src/rcatnet_search.h | 2 - src/search_params.h | 2 - src/thread.h | 2 - src/utils.cpp | 2 - src/utils.h | 2 - 34 files changed, 141 insertions(+), 139 deletions(-)
Title: A Way of Writing Functions that Quote their Arguments
Description: A facility for writing functions that quote their arguments,
may sometimes evaluate them in the environment where they were quoted,
and may pass them as quoted to other functions.
Author: Radford Neal
Maintainer: Radford Neal <radfordneal@gmail.com>
Diff between quotedargs versions 0.1.2 dated 2018-03-26 and 0.1.3 dated 2019-04-22
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS | 4 ++++ src/quotedargs.c | 10 ++++++++-- 4 files changed, 18 insertions(+), 8 deletions(-)
Title: New Plots Based on 'ggplot2' and Functions to Create Regular
Shapes
Description: An extension to 'ggplot2' with miscellaneous functions. It contains
two groups of functions: Functions in the first group draw 'ggplot2' - based plots: gg_shading_bar() draws barplot
with shading colors in each bar. geom_rect_cm(), geom_circle_cm() and geom_ellipse_cm() draw rectangles, circles
and ellipses with centimeter as their unit. Thus their sizes do not change when the coordinate system or the aspect ratio
changes. Functions in the second group generate coordinates for regular shapes and make linear transformations.
Author: Jiang Wu [aut, cre] (from Capital Normal University)
Maintainer: Jiang Wu <textidea@sina.com>
Diff between plothelper versions 0.1.0 dated 2019-04-07 and 0.1.1 dated 2019-04-22
DESCRIPTION | 10 +++++----- MD5 | 12 +++++++++--- NAMESPACE | 3 +++ R/count_each_column.R |only R/gg_shading_bar.R | 9 +++++++-- R/round_text.R |only R/spathxy.R |only man/count_each_column.Rd |only man/round_text.Rd |only man/spathxy.Rd |only 10 files changed, 24 insertions(+), 10 deletions(-)
Title: Functions to Automate Downloading Geospatial Data Available from
Several Federated Data Sources
Description: Functions to automate downloading geospatial data available from
several federated data sources (mainly sources maintained by the US Federal
government). Currently, the package enables extraction from seven datasets:
The National Elevation Dataset digital elevation models (1 and 1/3 arc-second;
USGS); The National Hydrography Dataset (USGS); The Soil Survey Geographic
(SSURGO) database from the National Cooperative Soil Survey (NCSS), which is
led by the Natural Resources Conservation Service (NRCS) under the USDA; the
Global Historical Climatology Network (GHCN), coordinated by National Climatic
Data Center at NOAA; the Daymet gridded estimates of daily weather parameters
for North America, version 3, available from the Oak Ridge National Laboratory's
Distributed Active Archive Center (DAAC); the International Tree Ring Data Bank;
and the National Land Cover Database (NLCD).
Author: R. Kyle Bocinsky [aut, cre],
Dylan Beaudette [ctb],
Scott Chamberlain [ctb]
Maintainer: R. Kyle Bocinsky <bocinsky@gmail.com>
Diff between FedData versions 2.5.6 dated 2019-01-11 and 2.5.7 dated 2019-04-22
DESCRIPTION | 18 +++++++++--------- MD5 | 28 ++++++++++++++-------------- NEWS.md | 3 +++ README.md | 17 +++++++++++------ man/figures/README-unnamed-chunk-11-1.png |binary man/figures/README-unnamed-chunk-13-2.png |binary man/figures/README-unnamed-chunk-13-4.png |binary man/figures/README-unnamed-chunk-13-6.png |binary man/figures/README-unnamed-chunk-9-1.png |binary tests/testthat/test.DAYMET.R | 2 ++ tests/testthat/test.GHCN.R | 1 + tests/testthat/test.NED.R | 4 ++++ tests/testthat/test.NHD.R | 4 ++++ tests/testthat/test.NLCD.R | 2 ++ tests/testthat/test.SSURGO.R | 5 +++++ 15 files changed, 55 insertions(+), 29 deletions(-)
Title: Censored Regression with Conditional Heteroscedasticity
Description: Different approaches to censored or truncated regression with
conditional heteroscedasticity are provided. First, continuous
distributions can be used for the (right and/or left censored or truncated)
response with separate linear predictors for the mean and variance.
Second, cumulative link models for ordinal data
(obtained by interval-censoring continuous data) can be employed for
heteroscedastic extended logistic regression (HXLR). In the latter type of
models, the intercepts depend on the thresholds that define the intervals.
Author: Jakob Messner [aut, cre] (<https://orcid.org/0000-0002-1027-3673>),
Achim Zeileis [aut] (<https://orcid.org/0000-0003-0918-3766>),
Reto Stauffer [aut] (<https://orcid.org/0000-0002-3798-5507>)
Maintainer: Jakob Messner <jwmm@elektro.dtu.dk>
Diff between crch versions 1.0-1 dated 2018-01-23 and 1.0-2 dated 2019-04-22
DESCRIPTION | 19 +++++++++++-------- MD5 | 12 ++++++------ build/partial.rdb |binary build/vignette.rds |binary inst/doc/crch.pdf |binary tests/Examples/crch-Ex.Rout.save | 23 ++++++++++++++--------- vignettes/crch.Rout.save | 2 +- 7 files changed, 32 insertions(+), 24 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-02-26 0.1-0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-09-20 0.1-0
Title: Gaussian Graphs Models Selection
Description: Graph estimation in Gaussian Graphical Models. The main functions return the adjacency matrix of an undirected graph estimated from a data matrix.
Author: Annie Bouvier, Christophe Giraud, Sylvie Huet, Verzelen N.
Maintainer: ORPHANED
Diff between GGMselect versions 0.1-12.1 dated 2018-02-01 and 0.1-12.2 dated 2019-04-22
DESCRIPTION | 10 MD5 | 28 tests/bsch.Rout.save | 8 tests/penInf.Rout.save | 2260 ++++++++++++++--------------- tests/sh9.2012.Rout.save | 3474 +++++++++++++++++++++++----------------------- tests/shPUR.Rout.save | 2720 ++++++++++++++++++------------------ tests/test1Fast.Rout.save | 446 ++--- tests/test1QE.Rout.save | 297 +-- tests/test2Fast.Rout.save | 546 +++---- tests/test2QE.Rout.save | 127 - tests/test3Fast.Rout.save | 468 +++--- tests/test3QE.Rout.save | 111 - tests/test5Fast.Rout.save | 492 +++--- tests/test7Fast.Rout.save | 516 +++--- tests/testMyFam.Rout.save | 10 15 files changed, 5752 insertions(+), 5761 deletions(-)
Title: Flexible Procedures for Clustering
Description: Various methods for clustering and cluster validation.
Fixed point clustering. Linear regression clustering. Clustering by
merging Gaussian mixture components. Symmetric
and asymmetric discriminant projections for visualisation of the
separation of groupings. Cluster validation statistics
for distance based clustering including corrected Rand index.
Cluster-wise cluster stability assessment. Methods for estimation of
the number of clusters: Calinski-Harabasz, Tibshirani and Walther's
prediction strength, Fang and Wang's bootstrap stability.
Gaussian/multinomial mixture fitting for mixed
continuous/categorical variables. Variable-wise statistics for cluster
interpretation. DBSCAN clustering. Interface functions for many
clustering methods implemented in R, including estimating the number of
clusters with kmeans, pam and clara. Modality diagnosis for Gaussian
mixtures. For an overview see package?fpc.
Author: Christian Hennig <c.hennig@ucl.ac.uk>
Maintainer: ORPHANED
Diff between fpc versions 2.1-11.1 dated 2018-07-20 and 2.1-11.2 dated 2019-04-22
DESCRIPTION | 8 - MD5 | 4 tests/Examples/fpc-Ex.Rout.save | 268 +++++++++++++++++++--------------------- 3 files changed, 136 insertions(+), 144 deletions(-)
Title: Time Series Analysis with State Space Model
Description: Functions for statistical analysis, modeling and simulation of time
series with state space model, based on the methodology in Kitagawa
(1993, ISBN: 4-00-007703-1 and 2005, ISBN: 4-00-005455-4).
Author: The Institute of Statistical Mathematics, based on the program by
Genshiro Kitagawa
Maintainer: Masami Saga <msaga@mtb.biglobe.ne.jp>
Diff between TSSS versions 1.2.3 dated 2019-04-15 and 1.2.4 dated 2019-04-22
DESCRIPTION | 6 +++--- MD5 | 16 +++++++++++----- inst/doc/changes.txt | 9 +++++++++ src/chebyshev.c |only src/comsub.f | 5 +++-- src/denstyf.f | 5 +++-- src/gamma.c |only src/gamma.h |only src/init.c | 2 +- src/lgamma.c |only src/lgammacor.c |only src/stirlerr.c |only 12 files changed, 30 insertions(+), 13 deletions(-)
Title: 'Rcpp' Implementation of 'FSelector' Entropy-Based Feature
Selection Algorithms with a Sparse Matrix Support
Description: 'Rcpp' (free of 'Java'/'Weka') implementation of 'FSelector' entropy-based feature selection
algorithms based on an MDL discretization (Fayyad U. M., Irani K. B.: Multi-Interval Discretization of Continuous-Valued Attributes for Classification Learning.
In 13'th International Joint Conference on Uncertainly in Artificial Intelligence (IJCAI93), pages 1022-1029, Chambery, France, 1993.) <https://www.ijcai.org/Proceedings/93-2/Papers/022.pdf>
with a sparse matrix support. It is also equipped with a parallel backend.
Author: Zygmunt Zawadzki [aut, cre],
Marcin Kosinski [aut],
Krzysztof Slomczynski [ctb],
Damian Skrzypiec [ctb]
Maintainer: Zygmunt Zawadzki <zygmunt@zstat.pl>
Diff between FSelectorRcpp versions 0.3.0 dated 2018-11-12 and 0.3.1 dated 2019-04-22
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- build/vignette.rds |binary inst/doc/integer-variables.html | 4 ++-- src/Makevars | 12 +----------- src/Makevars.win | 2 +- 6 files changed, 12 insertions(+), 22 deletions(-)
Title: Statistical Depth Functions for Multivariate Analysis
Description: Data depth concept offers a variety of powerful and user friendly
tools for robust exploration and inference for multivariate data. The offered
techniques may be successfully used in cases of lack of our knowledge on
parametric models generating data due to their nature. The
package consist of among others implementations of several data depth techniques
involving multivariate quantile-quantile plots, multivariate scatter estimators,
multivariate Wilcoxon tests and robust regressions.
Author: Zygmunt Zawadzki [aut, cre],
Daniel Kosiorowski [aut],
Krzysztof Slomczynski [ctb],
Mateusz Bocian [ctb],
Anna Wegrzynkiewicz [ctb]
Maintainer: Zygmunt Zawadzki <zygmunt@zstat.pl>
Diff between DepthProc versions 2.0.4 dated 2018-09-02 and 2.1.1 dated 2019-04-22
ChangeLog | 9 + DESCRIPTION | 13 +- MD5 | 22 ++- R/RcppExports.R | 60 ++++----- R/depth.R | 11 + R/depthContour.R | 58 ++++++++- README.md |only man/depthContour.Rd | 18 ++ man/figures |only src/Makevars | 8 - src/RcppExports.cpp | 208 +++++++++++++++++----------------- tests/testthat/test-ddplot.R |only tests/testthat/test-depth-basic-api.R |only 13 files changed, 245 insertions(+), 162 deletions(-)
Title: Capture-Mark-Recapture Analysis using Multiple Non-Invasive
Marks
Description: Traditional and spatial capture-mark-recapture analysis with
multiple non-invasive marks. The models implemented in 'multimark' combine
encounter history data arising from two different non-invasive ``marks'',
such as images of left-sided and right-sided pelage patterns of bilaterally
asymmetrical species, to estimate abundance and related demographic
parameters while accounting for imperfect detection. Bayesian models are
specified using simple formulae and fitted using Markov chain Monte Carlo.
Addressing deficiencies in currently available software, 'multimark' also
provides a user-friendly interface for performing Bayesian multimodel
inference using non-spatial or spatial capture-recapture data consisting of a single
conventional mark or multiple non-invasive marks.
Author: Brett T. McClintock [aut, cre],
Acho Arnold [ctb, cph] (C original matrix library,
https://github.com/najela/matrix.h),
Barry Brown [ctb] (Fortran original ranlib library),
James Lovato [ctb] (Fortran original ranlib library),
John Burkardt [ctb] (C original ranlib library,
http://people.sc.fsu.edu/~jburkardt/c_src/ranlib),
Cleve Moler [ctb] (C original linpack library,
http://www.kkant.net/geist/ranlib/),
Arjun Gopalaswamy [ctb] (modified snippets of R package SPACECAP code)
Maintainer: Brett T. McClintock <brett.mcclintock@noaa.gov>
Diff between multimark versions 2.0.1 dated 2017-06-30 and 2.1.0 dated 2019-04-22
DESCRIPTION | 16 +++--- MD5 | 54 ++++++++++---------- NAMESPACE | 119 ++++++++++++++++++++++++++++++--------------- NEWS | 15 +++++ R/CJS.R | 39 ++++++++++---- R/Closed.R | 41 ++++++++++++--- R/ClosedSCR.R | 94 +++++++++++++++++++++++------------ R/multimark_functions.R | 43 +++++++++++++--- man/bobcatSCR.Rd | 2 man/getdensityClosedSCR.Rd | 1 man/getprobsCJS.Rd | 1 man/getprobsClosed.Rd | 1 man/getprobsClosedSCR.Rd | 1 man/markCJS.Rd | 13 ++-- man/markClosed.Rd | 12 ++-- man/markClosedSCR.Rd | 10 ++- man/multimarkCJS.Rd | 16 +++--- man/multimarkClosed.Rd | 15 +++-- man/multimarkClosedSCR.Rd | 20 ++++--- man/multimodelCJS.Rd | 12 ++-- man/multimodelClosed.Rd | 9 +-- man/multimodelClosedSCR.Rd | 1 man/plotSpatialData.Rd | 1 man/processdata.Rd | 1 man/processdataSCR.Rd | 2 man/simdataCJS.Rd | 1 man/simdataClosed.Rd | 1 man/simdataClosedSCR.Rd | 1 28 files changed, 363 insertions(+), 179 deletions(-)
Title: Matrix Population Models
Description: Analyzes and predicts from matrix population models (Caswell 2006) <doi:10.1002/9781118445112.stat07481>.
Author: Marcelino de la Cruz
Maintainer: Marcelino de la Cruz <marcelino.delacruz@urjc.es>
Diff between Rramas versions 0.1-5 dated 2017-11-24 and 0.1-6 dated 2019-04-22
DESCRIPTION | 10 +++++----- MD5 | 6 +++--- man/as.tmatrix.Rd | 3 +-- man/projectn.Rd | 3 +++ 4 files changed, 12 insertions(+), 10 deletions(-)
Title: Diversity-Dependent Diversification
Description: Implements maximum likelihood and bootstrap methods based on
the diversity-dependent birth-death process to test whether
speciation or extinction are diversity-dependent, under various
models including various types of key innovations.
See Etienne et al. 2012, Proc. Roy. Soc. B 279: 1300-1309,
<DOI:10.1098/rspb.2011.1439>,
Etienne & Haegeman 2012, Am. Nat. 180: E75-E89,
<DOI:10.1086/667574> and
Etienne et al. 2016. Meth. Ecol. Evol. 7: 1092-1099,
<DOI:10.1111/2041-210X.12565>.
Also contains functions to simulate the diversity-dependent
process.
Author: Rampal S. Etienne & Bart Haegeman
Maintainer: Rampal S. Etienne <r.s.etienne@rug.nl>
Diff between DDD versions 3.9 dated 2019-03-19 and 4.0 dated 2019-04-22
DESCRIPTION | 8 MD5 | 33 +-- NAMESPACE | 1 R/bd_ML.R | 6 R/bd_loglik.R | 605 ++++++++++++++++++++++++++++--------------------------- R/dd_KI_ML.R | 144 ++++++------- R/dd_KI_loglik.R | 60 ----- R/dd_ML.R | 140 ++++++------ R/dd_MS_ML.R | 138 ++++++------ R/dd_MS_loglik.R | 33 --- R/dd_SR_ML.R | 175 +++++++-------- R/dd_SR_loglik.R | 122 ++--------- R/dd_loglik.R | 341 ++++++++++++++----------------- R/dd_utils.R | 41 ++- R/td_sim.R | 133 ++++++------ man/bd_loglik.Rd | 6 man/optimizer.Rd | 2 man/td_sim.Rd |only 18 files changed, 944 insertions(+), 1044 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-08-29 0.7.1
2016-07-21 0.7.0
2014-05-27 0.6.0
2013-09-13 0.5.2
2012-06-23 0.5.1
2012-06-09 0.4
2012-05-04 0.3
2012-03-13 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-11-21 0.1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-10-23 0.6.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-12-08 0.68-39
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-09-16 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-01-12 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-01-18 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-01-21 1.2
2015-01-05 1.1
2014-12-17 1.0
Title: Everyone's Statistical Software
Description: A framework that brings together an abundance of common
statistical models found across packages into a unified interface, and
provides a common architecture for estimation and interpretation, as well
as bridging functions to absorb increasingly more models into the
package. Zelig allows each individual package, for each
statistical model, to be accessed by a common uniformly structured call and
set of arguments. Moreover, Zelig automates all the surrounding building
blocks of a statistical work-flow--procedures and algorithms that may be
essential to one user's application but which the original package
developer did not use in their own research and might not themselves
support. These include bootstrapping, jackknifing, and re-weighting of data.
In particular, Zelig automatically generates predicted and simulated
quantities of interest (such as relative risk ratios, average treatment
effects, first differences and predicted and expected values) to interpret
and visualize complex models.
Author: Christine Choirat [aut],
Christopher Gandrud [aut, cre],
James Honaker [aut],
Kosuke Imai [aut],
Gary King [aut],
Olivia Lau [aut],
IQSS Harvard University [cph]
Maintainer: Christopher Gandrud <zelig.zee@gmail.com>
Diff between Zelig versions 5.1.6 dated 2018-02-27 and 5.1.6.1 dated 2019-04-22
Zelig-5.1.6.1/Zelig/DESCRIPTION | 6 +++--- Zelig-5.1.6.1/Zelig/MD5 | 6 +++--- Zelig-5.1.6.1/Zelig/data/CigarettesSW.tab.gz |only Zelig-5.1.6.1/Zelig/tests/testthat.R | 1 + Zelig-5.1.6/Zelig/data/CigarettesSW.tab |only 5 files changed, 7 insertions(+), 6 deletions(-)
Title: Generation of Virtual Species Distributions
Description: Provides a framework for generating virtual species distributions,
a procedure increasingly used in ecology to improve species distribution
models. This package integrates the existing methodological approaches with the
objective of generating virtual species distributions with increased ecological
realism.
Author: Boris Leroy [cre, aut], Christine N. Meynard [ctb], Celine Bellard [ctb], Franck Courchamp [ctb], Robin Delsol [ctb], Willson Gaul [ctb]
Maintainer: Boris Leroy <leroy.boris@gmail.com>
Diff between virtualspecies versions 1.4-4 dated 2018-09-10 and 1.4-4.1 dated 2019-04-22
DESCRIPTION | 6 +++--- MD5 | 4 ++-- man/generateRandomSp.Rd | 1 + 3 files changed, 6 insertions(+), 5 deletions(-)
More information about virtualspecies at CRAN
Permanent link
Title: Sego Miscellaneous
Description: A collection of functions for statistical computing and data manipulation in R.
Includes routines for data ingestion, operating on dataframes and matrices, conversion to and
from lists, converting factors, filename manipulation, programming utilities, parallelization, plotting,
statistical and mathematical operations, and time series.
Author: Landon Sego [aut, cre]
Maintainer: Landon Sego <LHS@byu.net>
Diff between Smisc versions 0.3.9 dated 2017-11-21 and 0.3.9.1 dated 2019-04-22
DESCRIPTION | 6 +++--- MD5 | 4 ++-- tests/testthat.R | 1 + 3 files changed, 6 insertions(+), 5 deletions(-)
Title: Robust Estimation of the Generalized log Gamma Model
Description: Robust estimation of the generalized log gamma model is provided using Quantile Tau estimator, Weighted Likelihood estimator and Truncated Maximum Likelihood estimator. Functions for regression and censored data are also available.
Author: Claudio Agostinelli <claudio.agostinelli@unitn.it>, Alfio Marazzi <Alfio.Marazzi@chuv.ch>, Victor Yohai <vyohai@uolsinectis.com.ar> and Alex Randriamiharisoa <Alex.Randriamiharisoa@chuv.ch>
Maintainer: Claudio Agostinelli <claudio.agostinelli@unitn.it>
Diff between robustloggamma versions 1.0-2 dated 2016-05-16 and 1.0-2.1 dated 2019-04-22
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ tests/loggammacenslmrob.ML.R | 2 ++ tests/loggammacenslmrob.MM.R | 2 ++ tests/loggammacenslmrob.S.R | 2 ++ tests/loggammacenslmrob.oneTML.R | 1 + tests/loggammacenslmrob.oneWL.R | 2 ++ 7 files changed, 18 insertions(+), 9 deletions(-)
More information about robustloggamma at CRAN
Permanent link
Title: Regression Modeling Strategies
Description: Regression modeling, testing, estimation, validation,
graphics, prediction, and typesetting by storing enhanced model design
attributes in the fit. 'rms' is a collection of functions that
assist with and streamline modeling. It also contains functions for
binary and ordinal logistic regression models, ordinal models for
continuous Y with a variety of distribution families, and the Buckley-James
multiple regression model for right-censored responses, and implements
penalized maximum likelihood estimation for logistic and ordinary
linear models. 'rms' works with almost any regression model, but it
was especially written to work with binary or ordinal regression
models, Cox regression, accelerated failure time models,
ordinary linear models, the Buckley-James model, generalized least
squares for serially or spatially correlated observations, generalized
linear models, and quantile regression.
Author: Frank E Harrell Jr <f.harrell@vanderbilt.edu>
Maintainer: Frank E Harrell Jr <f.harrell@vanderbilt.edu>
Diff between rms versions 5.1-3 dated 2019-01-27 and 5.1-3.1 dated 2019-04-22
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- man/Function.Rd | 1 + man/bj.Rd | 1 + man/sensuc.Rd | 4 ++-- 5 files changed, 11 insertions(+), 9 deletions(-)
Title: Pam: Prediction Analysis for Microarrays
Description: Some functions for sample classification in microarrays.
Author: T. Hastie, R. Tibshirani, Balasubramanian Narasimhan, Gil Chu
Maintainer: Rob Tibshirani <tibs@stanford.edu>
Diff between pamr versions 1.56 dated 2019-02-01 and 1.56.1 dated 2019-04-22
DESCRIPTION | 6 +++--- MD5 | 38 +++++++++++++++++++------------------- man/pamr.adaptthresh.Rd | 1 + man/pamr.batchadjust.Rd | 1 + man/pamr.confusion.Rd | 1 + man/pamr.cv.Rd | 1 + man/pamr.decorrelate.Rd | 1 + man/pamr.fdr.Rd | 1 + man/pamr.geneplot.Rd | 1 + man/pamr.indeterminate.Rd | 1 + man/pamr.listgenes.Rd | 1 + man/pamr.makeclasses.Rd | 1 + man/pamr.menu.Rd | 1 + man/pamr.plotcen.Rd | 1 + man/pamr.plotcv.Rd | 1 + man/pamr.plotcvprob.Rd | 1 + man/pamr.plotfdr.Rd | 1 + man/pamr.predict.Rd | 1 + man/pamr.predictmany.Rd | 1 + man/pamr.train.Rd | 1 + 20 files changed, 40 insertions(+), 22 deletions(-)
Title: Localised Co-Dependency Analysis
Description: Performs model fitting and significance estimation for Localised Co-Dependency between pairs of features of a numeric dataset.
Author: Ed Curry [aut, cre]
Maintainer: Ed Curry <e.curry@imperial.ac.uk>
Diff between LCA versions 0.1 dated 2013-09-30 and 0.1.1 dated 2019-04-22
DESCRIPTION | 12 ++++++------ MD5 | 6 +++--- NAMESPACE | 10 +++------- man/LCA.Rd | 1 + 4 files changed, 13 insertions(+), 16 deletions(-)
Title: The 'jamovi' Analyses
Description: A suite of common statistical methods such as descriptives,
t-tests, ANOVAs, regression, correlation matrices, proportion tests,
contingency tables, and factor analysis. This package is also useable from
the 'jamovi' statistical spreadsheet (see <https://www.jamovi.org> for more
information).
Author: Ravi Selker, Jonathon Love, Damian Dropmann
Maintainer: Jonathon Love <jon@thon.cc>
Diff between jmv versions 0.9.6 dated 2018-12-11 and 0.9.6.1 dated 2019-04-22
DESCRIPTION | 6 MD5 | 8 build/vignette.rds |binary inst/doc/new-syntax.html | 509 +++++++++++++++++++++++++++-------------------- tests/testthat.R | 2 5 files changed, 309 insertions(+), 216 deletions(-)
Title: Tidy Statistical Inference
Description: The objective of this package is to perform inference using an expressive statistical grammar that coheres with the tidy design framework.
Author: Andrew Bray [aut, cre],
Chester Ismay [aut],
Ben Baumer [aut],
Mine Cetinkaya-Rundel [aut],
Evgeni Chasnovski [ctb],
Ted Laderas [ctb],
Nick Solomon [ctb],
Johanna Hardin [ctb],
Albert Y. Kim [ctb],
Neal Fultz [ctb],
Doug Friedman [ctb],
Richie Cotton [ctb],
Brian Fannin [ctb]
Maintainer: Andrew Bray <abray@reed.edu>
Diff between infer versions 0.4.0 dated 2018-11-15 and 0.4.0.1 dated 2019-04-22
DESCRIPTION | 6 +++--- MD5 | 4 ++-- tests/testthat.R | 1 + 3 files changed, 6 insertions(+), 5 deletions(-)
Title: Network Analysis and Visualization
Description: Routines for simple graphs and network analysis. It can
handle large graphs very well and provides functions for generating random
and regular graphs, graph visualization, centrality methods and much more.
Author: See AUTHORS file.
Maintainer: Gábor Csárdi <csardi.gabor@gmail.com>
Diff between igraph versions 1.2.4 dated 2019-02-13 and 1.2.4.1 dated 2019-04-22
DESCRIPTION | 6 +++--- MD5 | 4 ++-- tests/testthat.R | 1 + 3 files changed, 6 insertions(+), 5 deletions(-)
Title: Population Genetics
Description: Classes and methods for handling genetic data. Includes
classes to represent genotypes and haplotypes at single markers
up to multiple markers on multiple chromosomes. Function
include allele frequencies, flagging homo/heterozygotes,
flagging carriers of certain alleles, estimating and testing
for Hardy-Weinberg disequilibrium, estimating and testing for
linkage disequilibrium, ...
Author: Gregory Warnes, with contributions from Gregor Gorjanc,
Friedrich Leisch, and Michael Man.
Maintainer: Gregory Warnes <greg@warnes.net>
Diff between genetics versions 1.3.8.1.1 dated 2019-02-01 and 1.3.8.1.2 dated 2019-04-22
DESCRIPTION | 6 +++--- MD5 | 6 +++--- man/write.pop.file.Rd | 12 ++++++------ tests/makeGenotype_with_sep.R | 2 ++ 4 files changed, 14 insertions(+), 12 deletions(-)
Title: Tools for Spatial Data
Description: For curve, surface and function fitting with an emphasis
on splines, spatial data and spatial statistics. The major methods
include cubic, and thin plate splines, Kriging, and compactly supported
covariance functions for large data sets. The splines and Kriging methods are
supported by functions that can determine the smoothing parameter
(nugget and sill variance) and other covariance function parameters by cross
validation and also by restricted maximum likelihood. For Kriging
there is an easy to use function that also estimates the correlation
scale (range parameter). A major feature is that any covariance function
implemented in R and following a simple format can be used for
spatial prediction. There are also many useful functions for plotting
and working with spatial data as images. This package also contains
an implementation of sparse matrix methods for large spatial data
sets and currently requires the sparse matrix (spam) package. Use
help(fields) to get started and for an overview. The fields source
code is deliberately commented and provides useful explanations of
numerical details as a companion to the manual pages. The commented
source code can be viewed by expanding source code version
and looking in the R subdirectory. The reference for fields can be generated
by the citation function in R and has DOI <doi:10.5065/D6W957CT>.
Author: Douglas Nychka [aut, cre],
Reinhard Furrer [aut],
John Paige [aut],
Stephan Sain [aut]
Maintainer: Douglas Nychka <douglasnychka@gmail.com>
Diff between fields versions 9.6 dated 2018-01-29 and 9.6.1 dated 2019-04-22
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- man/Krig.replicates.Rd | 4 ---- tests/mKrig.MLE.test.Rout.save | 10 +++++----- tests/mKrig.test.R | 2 +- tests/mKrig.test.Rout.save | 10 +++++----- 6 files changed, 19 insertions(+), 23 deletions(-)
Title: Graph/Network Visualization
Description: Build graph/network structures using functions for stepwise addition and
deletion of nodes and edges. Work with data available in tables for bulk
addition of nodes, edges, and associated metadata. Use graph selections
and traversals to apply changes to specific nodes or edges. A wide
selection of graph algorithms allow for the analysis of graphs. Visualize
the graphs and take advantage of any aesthetic properties assigned to
nodes and edges.
Author: Richard Iannone [aut, cre]
Maintainer: Richard Iannone <riannone@me.com>
Diff between DiagrammeR versions 1.0.0 dated 2018-03-01 and 1.0.1 dated 2019-04-22
DESCRIPTION | 6 +++--- MD5 | 4 ++-- tests/testthat.R | 1 + 3 files changed, 6 insertions(+), 5 deletions(-)
Title: Multivariate Dependence with Copulas
Description: Classes (S4) of commonly used elliptical, Archimedean,
extreme-value and other copula families, as well as their rotations,
mixtures and asymmetrizations. Nested Archimedean copulas, related
tools and special functions. Methods for density, distribution, random
number generation, bivariate dependence measures, Rosenblatt transform,
Kendall distribution function, perspective and contour plots. Fitting of
copula models with potentially partly fixed parameters, including
standard errors. Serial independence tests, copula specification tests
(independence, exchangeability, radial symmetry, extreme-value
dependence, goodness-of-fit) and model selection based on
cross-validation. Empirical copula, smoothed versions, and
non-parametric estimators of the Pickands dependence function.
Author: Marius Hofert [aut] (<https://orcid.org/0000-0001-8009-4665>),
Ivan Kojadinovic [aut] (<https://orcid.org/0000-0002-2903-1543>),
Martin Maechler [aut, cre] (<https://orcid.org/0000-0002-8685-9910>),
Jun Yan [aut] (<https://orcid.org/0000-0003-4401-7296>),
Johanna G. Nešlehová [ctb] (evTestK(),
<https://orcid.org/0000-0001-9634-4796>)
Maintainer: Martin Maechler <maechler@stat.math.ethz.ch>
Diff between copula versions 0.999-19 dated 2018-12-21 and 0.999-19.1 dated 2019-04-22
DESCRIPTION | 6 MD5 | 49 ++- build/partial.rdb |binary build/vignette.rds |binary inst/doc/AC_Liouville.R |only inst/doc/AC_Liouville.html | 69 ++-- inst/doc/AR_Clayton.R |only inst/doc/AR_Clayton.html | 121 ++++---- inst/doc/Frank-Rmpfr.pdf |binary inst/doc/GIG.R |only inst/doc/GIG.html | 385 +++++++++++++------------- inst/doc/HAXC.R |only inst/doc/HAXC.html | 349 +++++++++++------------ inst/doc/NALC.R |only inst/doc/NALC.html | 397 +++++++++++++------------- inst/doc/copula_GARCH.R |only inst/doc/copula_GARCH.html | 153 +++++----- inst/doc/dNAC.R |only inst/doc/dNAC.html | 255 ++++++++--------- inst/doc/empiricial_copulas.R |only inst/doc/empiricial_copulas.html | 339 +++++++++++------------ inst/doc/logL_visualization.R |only inst/doc/logL_visualization.html | 560 +++++++++++++++++++------------------- inst/doc/nacopula-pkg.pdf |binary inst/doc/qrng.R |only inst/doc/qrng.html | 521 +++++++++++++++++------------------ inst/doc/rhoAMH-dilog.pdf |binary inst/doc/wild_animals.R |only inst/doc/wild_animals.html | 574 +++++++++++++++++++-------------------- tests/fitting-ex.R | 1 tests/mixCop-tst.R | 1 31 files changed, 1901 insertions(+), 1879 deletions(-)
Title: Archetypal Analysis
Description: The main function archetypes implements a
framework for archetypal analysis supporting arbitrary
problem solving mechanisms for the different conceptual
parts of the algorithm.
Author: Manuel J. A. Eugster [aut, cre],
Friedrich Leisch [aut],
Sohan Seth [ctb]
Maintainer: Manuel J. A. Eugster <manuel@mjae.net>
Diff between archetypes versions 2.2-0 dated 2014-04-10 and 2.2-0.1 dated 2019-04-22
DESCRIPTION | 6 +- MD5 | 22 ++++----- NAMESPACE | 7 +++ R/archetypes-kit-blocks.R | 4 - R/archetypes-map.R | 4 - build/vignette.rds |binary inst/CITATION | 2 inst/doc/archetypes.R | 103 +++++++++++++++++++++++----------------------- inst/doc/archetypes.Rnw | 1 inst/doc/archetypes.pdf |binary man/simplexplot.Rd | 1 vignettes/archetypes.Rnw | 1 12 files changed, 80 insertions(+), 71 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-11-21 2.0-0
2017-10-16 1.0-0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-06-21 0.8.1
2016-09-11 0.8.0
2016-05-06 0.5.0
2016-04-07 0.3.0
2015-12-11 0.2.0
2015-11-30 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-05-16 0.4.2
2018-05-09 0.4.1
2018-01-08 0.3.0
2015-12-11 0.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-04-26 2.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-09-09 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-02-08 0.1.0
2019-01-07 0.0.3
2018-10-30 0.0.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-03-06 1.0.0
2017-06-23 0.8.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-04-07 0.22.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-04-18 1.4
2016-10-11 1.3.1
2016-10-05 1.3
2016-06-06 1.2.1
2016-04-26 1.2
2015-12-07 1.1.1
2015-04-21 1.1
2015-01-19 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-12-07 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-11-06 1.3
2015-04-22 1.2
2014-10-16 1.0
2014-09-13 0.2
2014-07-10 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-09-03 0.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-03-05 1.1.0
2018-02-09 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-10-22 1.0.1
2012-08-28 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-08-11 1.0.0
Title: Mixed-Pair Mutual Information Estimators
Description: Uses a kernel smoothing approach to calculate Mutual Information
for comparisons between all types of variables including continuous vs
continuous, continuous vs discrete and discrete vs discrete. Uses a
nonparametric bias correction giving Bias Corrected Mutual Information
(BCMI). Implemented efficiently in Fortran 95 with OpenMP and suited to
large genomic datasets.
Author: Chris Pardy
Maintainer: Chris Pardy <cooliomcdude@gmail.com>
Diff between mpmi versions 0.42 dated 2016-11-20 and 0.43 dated 2019-04-22
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NEWS | 3 +++ build/vignette.rds |binary inst/doc/Vignette.pdf |binary src/Makevars | 4 ++-- 6 files changed, 14 insertions(+), 11 deletions(-)
Title: Forecasting Mortality, Fertility, Migration and Population Data
Description: Functions for demographic analysis including lifetable
calculations; Lee-Carter modelling; functional data analysis of
mortality rates, fertility rates, net migration numbers; and
stochastic population forecasting.
Author: Rob J Hyndman with contributions from Heather Booth, Leonie Tickle and John Maindonald.
Maintainer: Rob J Hyndman <Rob.Hyndman@monash.edu>
Diff between demography versions 1.21 dated 2019-01-18 and 1.22 dated 2019-04-22
demography-1.21/demography/man/monotonic.Rd |only demography-1.21/demography/man/residuals.fmm.Rd |only demography-1.22/demography/ChangeLog | 12 demography-1.22/demography/DESCRIPTION | 7 demography-1.22/demography/MD5 | 101 ++--- demography-1.22/demography/NAMESPACE | 105 +++-- demography-1.22/demography/R/attach.R | 9 demography-1.22/demography/R/coherent.R | 67 +++ demography-1.22/demography/R/demogdata.R | 238 ++++++++++++ demography-1.22/demography/R/demography.R |only demography-1.22/demography/R/fdm.R | 349 +++++++++++++++++- demography-1.22/demography/R/fertility.R | 30 + demography-1.22/demography/R/hmd.R | 103 +++++ demography-1.22/demography/R/lca.R | 146 +++++++ demography-1.22/demography/R/lifetable.R | 140 +++++++ demography-1.22/demography/R/monotonic.R | 49 ++ demography-1.22/demography/R/netmigration.R | 41 ++ demography-1.22/demography/R/simulate.R | 33 + demography-1.22/demography/R/smooth.R | 51 ++ demography-1.22/demography/R/update.R | 64 ++- demography-1.22/demography/README.md | 21 - demography-1.22/demography/man/cm.spline.Rd |only demography-1.22/demography/man/coherentfdm.Rd | 51 +- demography-1.22/demography/man/combine.demogdata.Rd | 37 + demography-1.22/demography/man/compare.demogdata.Rd | 94 ++-- demography-1.22/demography/man/demogdata.Rd | 46 +- demography-1.22/demography/man/demography-package.Rd | 14 demography-1.22/demography/man/extract.ages.Rd | 23 - demography-1.22/demography/man/extract.years.Rd | 22 - demography-1.22/demography/man/fdm.Rd | 101 +++-- demography-1.22/demography/man/forecast.fdm.Rd | 71 ++- demography-1.22/demography/man/forecast.fdmpr.Rd | 42 +- demography-1.22/demography/man/forecast.lca.Rd | 32 + demography-1.22/demography/man/hmd.Rd | 149 ++++--- demography-1.22/demography/man/isfe.Rd | 68 ++- demography-1.22/demography/man/lca.Rd | 127 +++--- demography-1.22/demography/man/life.expectancy.Rd | 53 +- demography-1.22/demography/man/lifetable.Rd | 68 +-- demography-1.22/demography/man/mean.demogdata.Rd | 41 +- demography-1.22/demography/man/models.Rd | 33 - demography-1.22/demography/man/plot.demogdata.Rd | 64 ++- demography-1.22/demography/man/plot.errorfdm.Rd | 28 - demography-1.22/demography/man/plot.fmforecast.Rd | 59 +-- demography-1.22/demography/man/plot.lifetable.Rd | 29 - demography-1.22/demography/man/pop.sim.Rd | 39 +- demography-1.22/demography/man/read.demogdata.Rd | 82 ++-- demography-1.22/demography/man/residuals.fdm.Rd |only demography-1.22/demography/man/set.upperage.Rd | 20 - demography-1.22/demography/man/sex.ratio.Rd | 18 demography-1.22/demography/man/simulate.fmforecast.Rd | 39 +- demography-1.22/demography/man/smooth.demogdata.Rd | 76 ++- demography-1.22/demography/man/summary.fdm.Rd | 31 - demography-1.22/demography/man/tfr.Rd | 46 +- demography-1.22/demography/man/update.Rd | 41 +- 54 files changed, 2405 insertions(+), 805 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-03-22 3.0.5
2019-02-24 3.0.2
2018-04-04 3.0.0
2017-10-24 2.0.4
2017-10-23 2.0.3
2017-09-26 2.0.2
2017-09-17 2.0.1
2017-09-11 2.0.0
2017-06-14 1.5.3
2017-04-15 1.5.1
2017-04-15 1.5.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-07-30 2.2.10
2017-07-08 2.2.8
2016-06-21 2.2.6
2015-11-19 2.2.3
2015-09-08 2.2.2
2015-07-09 2.1.1
2015-05-20 2.0.2
2014-08-01 1.1-6
2014-07-31 1.1-3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-10-16 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-01-20 1.2.1
2014-12-16 1.1
2014-11-10 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-02-09 0.2.0
2018-06-28 0.1.1
2018-06-14 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-04-05 1.3
2015-12-27 1.2
2015-10-28 1.1
2015-10-23 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-03-23 1.3.4
2016-01-05 1.3.3
2014-09-29 1.3.2
2014-02-27 1.3.1
2014-02-12 1.3
2013-10-18 1.2
2013-10-11 1.1
2013-09-13 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-11-29 0.2.1
2018-10-26 0.2.0
2018-08-06 0.1.2
2018-07-31 0.1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-12-21 1.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-01-11 0.1-2
2014-11-22 0.1-1
2014-09-04 0.1-0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-06-18 0.4.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-10-05 0.2.3
2017-10-04 0.2.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-10-30 1.1
2010-05-01 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-04-13 2.0
2018-02-05 1.0
2018-02-05 1.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-10-10 0.7-0
2018-04-12 0.6-0
2017-09-11 0.5-7
2016-10-13 0.5-6
2015-12-18 0.5-5
2014-09-18 0.5-4
2012-09-10 0.5-1
2012-06-07 0.5-0
2012-01-13 0.4-3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-09-08 0.2.0
2015-08-25 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-07-25 0.3.0
2018-05-21 0.2.0
2018-04-06 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-01-03 0.3.0
2016-11-11 0.1.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-11-10 1.2.0
2016-12-20 1.1.0
2016-06-01 1.0.0
2015-09-19 0.1.2
2015-07-30 0.1.1
2015-07-19 0.1.0
2015-03-06 0.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-10-21 1.4.8
Title: Easy Data Import Using GUI File Picker and Seamless
Communication Between an Excel and R
Description: Choosing any rectangular data file using interactive GUI dialog box, and seamlessly manipulating tidy data between an 'Excel' window and R session.
Author: JooYoung Seo [aut, cre] (<https://orcid.org/0000-0002-4064-6012>),
Soyoung Choi [aut] (<https://orcid.org/0000-0002-0998-3352>),
hyun seung Lee [ctb],
Jonghoen Kim [ctb]
Maintainer: JooYoung Seo <jooyoung@psu.edu>
Diff between ezpickr versions 1.0.4 dated 2019-03-23 and 1.0.5 dated 2019-04-22
DESCRIPTION | 20 ++++++++++---------- MD5 | 16 ++++++++-------- NEWS.md | 9 +++++++++ R/pick.R | 8 ++++---- README.md | 2 ++ build/vignette.rds |binary inst/NEWS | 9 +++++++++ inst/doc/ezpickr_vignette.html | 6 +++--- man/ezpickr-package.Rd | 4 ++-- 9 files changed, 47 insertions(+), 27 deletions(-)
Title: Acquisition and Processing of NASA Soil Moisture Active-Passive
(SMAP) Data
Description: Facilitates programmatic access to NASA Soil Moisture Active
Passive (SMAP) data with R. It includes functions to search for, acquire,
and extract SMAP data.
Author: Maxwell Joseph [aut, cre],
Matthew Oakley [aut],
Zachary Schira [aut]
Maintainer: Maxwell Joseph <maxwell.b.joseph@colorado.edu>
Diff between smapr versions 0.2.0 dated 2018-09-24 and 0.2.1 dated 2019-04-22
DESCRIPTION | 9 MD5 | 38 +- NEWS.md | 5 R/download_smap.R | 2 R/extract_smap.R | 5 R/find_smap.R | 4 R/list_smap.R | 2 README.md | 6 build/vignette.rds |binary inst/doc/smapr-intro.html | 569 ++++++++++++++++++------------------ man/download_smap.Rd | 2 man/extract_smap.Rd | 2 man/figures/extract-data-1.png |binary man/find_smap.Rd | 4 man/list_smap.Rd | 2 tests/testthat/test-download_smap.R | 26 - tests/testthat/test-extract_smap.R | 32 +- tests/testthat/test-find_smap.R | 6 tests/testthat/test-list_smap.R | 6 tests/testthat/test-zzz.R | 1 20 files changed, 375 insertions(+), 346 deletions(-)
Title: Download or Upload 'Socrata' Data Sets
Description: Provides easier interaction with
'Socrata' open data portals <http://dev.socrata.com>.
Users can provide a 'Socrata' data set resource URL,
or a 'Socrata' Open Data API (SoDA) web query,
or a 'Socrata' "human-friendly" URL,
returns an R data frame. Converts dates to 'POSIX'
format and manages throttling by 'Socrata'.
Users can upload data to 'Socrata' portals directly
from R.
Author: Hugh Devlin, Ph. D., Tom Schenk, Jr., Gene Leynes, Nick Lucius, John Malc, Mark Silverberg, and Peter Schmeideskamp
Maintainer: "Tom Schenk Jr." <developers@cityofchicago.org>
Diff between RSocrata versions 1.7.5-3 dated 2019-01-25 and 1.7.6-3 dated 2019-04-22
DESCRIPTION | 8 MD5 | 8 R/RSocrata.R | 1016 +++++++++++++++++++++---------------------- tests/testthat.R | 8 tests/testthat/test-all.R | 1071 ++++++++++++++++++++++------------------------ 5 files changed, 1053 insertions(+), 1058 deletions(-)
Title: Estimate Permutation p-Values for Random Forest Importance
Metrics
Description: Estimate significance of importance metrics
for a Random Forest model by permuting the response
variable. Produces null distribution of importance
metrics for each predictor variable and p-value of
observed. Provides summary and visualization functions for 'randomForest'
results.
Author: Eric Archer [aut, cre]
Maintainer: Eric Archer <eric.archer@noaa.gov>
Diff between rfPermute versions 2.1.6 dated 2018-07-07 and 2.1.7 dated 2019-04-22
DESCRIPTION | 10 +++++----- MD5 | 28 ++++++++++++++-------------- NAMESPACE | 1 - R/impHeatmap.R | 17 +++++++++++++---- R/internals.R | 3 ++- R/plotConfMat.R | 8 +++++--- R/plotImpVarDist.R | 2 -- R/plotInbag.R | 1 - R/plotOOBtimes.R | 2 -- R/plotPredictedProbs.R | 2 -- R/plotRFtrace.R | 5 +---- R/rfPermute.R | 2 ++ R/rfPermute.default.R | 13 +++++++++---- README.md | 8 ++++++-- man/proximityPlot.Rd | 6 +++--- 15 files changed, 60 insertions(+), 48 deletions(-)
Title: Query 'HaploReg', 'RegulomeDB', 'LDlink'
Description: A set of utilities for querying
'HaploReg' <http://archive.broadinstitute.org/mammals/haploreg/haploreg.php>,
'RegulomeDB' <http://www.regulomedb.org>, and LDlink <https://analysistools.nci.nih.gov/LDlink>
web-based tools. The package connects to
'HaploReg', 'RegulomeDB' and 'LDlink', searches and downloads results, without
opening web pages, directly from R environment.
Results are stored in a data frame that can be directly used in various
kinds of downstream analyses.
Author: Ilya Y. Zhbannikov [aut, cre],
Konstantin G. Arbeev [aut],
Anatoliy I. Yashin [aut]
Maintainer: Ilya Y. Zhbannikov <ilya.zhbannikov@duke.edu>
Diff between haploR versions 2.0.7 dated 2019-01-18 and 2.0.9 dated 2019-04-22
DESCRIPTION | 10 ++--- MD5 | 28 +++++++-------- NAMESPACE | 2 + R/LDlink.R | 4 +- R/general.R | 3 + inst/NEWS | 4 +- inst/doc/haplor-vignette.R | 21 ++++++----- inst/doc/haplor-vignette.Rmd | 11 +++--- inst/doc/haplor-vignette.html | 64 ++++++++++-------------------------- inst/unitTests/test_LDlink.R | 18 +++++----- inst/unitTests/test_queryHaploreg.R | 25 ++++---------- inst/unitTests/test_queryRegulome.R | 6 ++- man/haploR-LDlink.LDmatrix.Rd | 2 + tests/runTests.R | 1 vignettes/haplor-vignette.Rmd | 11 +++--- 15 files changed, 94 insertions(+), 116 deletions(-)
Title: Fast Creation of Dummy (Binary) Columns and Rows from
Categorical Variables
Description: Creates dummy columns from columns that have categorical variables (character or factor types). You can also specify which columns to make dummies out of, or which columns to ignore. Also creates dummy rows from character, factor, and Date columns. This package provides a significant speed increase from creating dummy variables through model.matrix().
Author: Jacob Kaplan [aut, cre],
Benjamin Schlegel [ctb]
Maintainer: Jacob Kaplan <jkkaplan6@gmail.com>
Diff between fastDummies versions 1.2.0 dated 2018-06-21 and 1.3.0 dated 2019-04-22
fastDummies-1.2.0/fastDummies/README.md |only fastDummies-1.3.0/fastDummies/DESCRIPTION | 11 - fastDummies-1.3.0/fastDummies/MD5 | 22 +- fastDummies-1.3.0/fastDummies/NEWS.md | 14 + fastDummies-1.3.0/fastDummies/R/dummy_cols.R | 50 +++-- fastDummies-1.3.0/fastDummies/build/vignette.rds |binary fastDummies-1.3.0/fastDummies/inst/WORDLIST |only fastDummies-1.3.0/fastDummies/inst/doc/making-dummy-rows.html | 87 ++++++---- fastDummies-1.3.0/fastDummies/inst/doc/making-dummy-variables.html | 71 +++++--- fastDummies-1.3.0/fastDummies/man/dummy_cols.Rd | 5 fastDummies-1.3.0/fastDummies/man/dummy_columns.Rd | 5 fastDummies-1.3.0/fastDummies/man/dummy_rows.Rd | 1 fastDummies-1.3.0/fastDummies/tests/spelling.R |only fastDummies-1.3.0/fastDummies/tests/testthat/test-columns-sort-order.R |only 14 files changed, 170 insertions(+), 96 deletions(-)
Title: Co-Operation: Fast Covariance, Correlation, and Cosine
Similarity Operations
Description: Fast implementations of the co-operations: covariance,
correlation, and cosine similarity. The implementations are
fast and memory-efficient and their use is resolved
automatically based on the input data, handled by R's S3
methods. Full descriptions of the algorithms and benchmarks
are available in the package vignettes.
Author: Drew Schmidt [aut, cre],
Christian Heckendorf [ctb] (Caught some memory errors.)
Maintainer: Drew Schmidt <wrathematics@gmail.com>
Diff between coop versions 0.6-1 dated 2017-11-14 and 0.6-2 dated 2019-04-22
ChangeLog | 5 ++ DESCRIPTION | 6 +- MD5 | 46 ++++++++++----------- README.md | 2 inst/doc/algos.Rnw | 2 inst/doc/algos.pdf |binary inst/doc/coop.Rnw | 2 inst/doc/coop.pdf |binary src/R_naomit.c | 8 +-- src/R_wrapper.c | 2 src/dense.c | 2 src/dense_inplace.c | 12 +---- src/dense_pairwise.c | 8 +-- src/scale.c | 2 src/sparse.c | 100 ++++++++++++++++++----------------------------- src/utils/cdefs.h | 2 src/utils/fill.h | 7 +-- src/utils/inverse.h | 18 +++----- src/utils/mmult.h | 1 src/utils/special_vals.h | 2 src/utils/sumstats.h | 4 - src/utils/xpose.h | 2 vignettes/algos.Rnw | 2 vignettes/coop.Rnw | 2 24 files changed, 110 insertions(+), 127 deletions(-)
Title: Generate 'CodeMeta' Metadata for R Packages
Description: The 'Codemeta' Project defines a 'JSON-LD' format for describing
software metadata, as detailed at <https://codemeta.github.io>. This package
provides utilities to generate, parse, and modify 'codemeta.json' files
automatically for R packages, as well as tools and examples for working with
'codemeta.json' 'JSON-LD' more generally.
Author: Carl Boettiger [aut, cre, cph]
(<https://orcid.org/0000-0002-1642-628X>),
Anna Krystalli [rev, ctb] (<https://orcid.org/0000-0002-2378-4915>),
Toph Allen [rev] (<https://orcid.org/0000-0003-4580-091X>),
Maëlle Salmon [ctb, aut] (<https://orcid.org/0000-0002-2815-0399>),
rOpenSci [fnd] (https://ropensci.org/),
Katrin Leinweber [ctb] (<https://orcid.org/0000-0001-5135-5758>),
Noam Ross [ctb] (<https://orcid.org/0000-0002-2136-0000>),
Arfon Smith [ctb],
Jeroen Ooms [ctb] (<https://orcid.org/0000-0002-4035-0289>),
Sebastian Meyer [ctb] (<https://orcid.org/0000-0002-1791-9449>),
Michael Rustler [ctb] (<https://orcid.org/0000-0003-0647-7726>),
Hauke Sonnenberg [ctb] (<https://orcid.org/0000-0001-9134-2871>)
Maintainer: Carl Boettiger <cboettig@gmail.com>
Diff between codemetar versions 0.1.7 dated 2019-03-12 and 0.1.8 dated 2019-04-22
DESCRIPTION | 8 ++-- MD5 | 54 ++++++++++++++--------------- NAMESPACE | 1 NEWS.md | 6 +++ R/codemeta_validate.R | 4 ++ R/parse_depends.R | 5 +- R/utils.R | 15 -------- README.md | 16 ++++---- build/vignette.rds |binary inst/doc/codemeta-intro.R | 4 +- inst/doc/codemeta-intro.Rmd | 6 +-- inst/doc/codemeta-intro.html | 33 ++++++++++++----- tests/testthat.R | 1 tests/testthat/test-cloned-repo.R | 1 tests/testthat/test-codemeta_description.R | 5 ++ tests/testthat/test-codemeta_validate.R | 3 + tests/testthat/test-crosswalk.R | 1 tests/testthat/test-extract_badges.R | 1 tests/testthat/test-frame.R | 36 ++++++++++--------- tests/testthat/test-give_opinions.R | 14 +++++++ tests/testthat/test-guess_metadata.R | 8 ++++ tests/testthat/test-many-packages.R | 1 tests/testthat/test-parse_citation.R | 1 tests/testthat/test-parse_depends.R | 5 ++ tests/testthat/test-parse_people.R | 1 tests/testthat/test-utils.R | 1 tests/testthat/test-write_codemeta.R | 16 +++++++- vignettes/codemeta-intro.Rmd | 6 +-- 28 files changed, 162 insertions(+), 91 deletions(-)