Title: Sparse Principal Component Analysis via Random Projections
(SPCAvRP)
Description: Implements the SPCAvRP algorithm, developed and analysed in "Sparse principal component analysis via random projections" Gataric, M., Wang, T. and Samworth, R. J. (2018) <arXiv:1712.05630>. The algorithm is based on the aggregation of eigenvector information from carefully-selected random projections of the sample covariance matrix.
Author: Milana Gataric, Tengyao Wang and Richard J. Samworth
Maintainer: Milana Gataric <m.gataric@statslab.cam.ac.uk>
Diff between SPCAvRP versions 0.3 dated 2018-07-26 and 0.4 dated 2019-05-03
SPCAvRP-0.3/SPCAvRP/R/SPCAvRP_parallel.R |only SPCAvRP-0.3/SPCAvRP/R/SPCAvRP_ranking.R |only SPCAvRP-0.3/SPCAvRP/R/final_estimator.R |only SPCAvRP-0.3/SPCAvRP/R/project_covariance.R |only SPCAvRP-0.3/SPCAvRP/R/select_projection.R |only SPCAvRP-0.3/SPCAvRP/R/select_projections_subspace.R |only SPCAvRP-0.3/SPCAvRP/man/SPCAvRP_parallel.Rd |only SPCAvRP-0.3/SPCAvRP/man/SPCAvRP_ranking.Rd |only SPCAvRP-0.3/SPCAvRP/man/final_estimator.Rd |only SPCAvRP-0.3/SPCAvRP/man/project_covariance.Rd |only SPCAvRP-0.3/SPCAvRP/man/select_projection.Rd |only SPCAvRP-0.3/SPCAvRP/man/select_projections_subspace.Rd |only SPCAvRP-0.4/SPCAvRP/DESCRIPTION | 10 SPCAvRP-0.4/SPCAvRP/MD5 | 28 -- SPCAvRP-0.4/SPCAvRP/NAMESPACE | 2 SPCAvRP-0.4/SPCAvRP/R/SPCAvRP.R | 187 +++++++++++++++-- SPCAvRP-0.4/SPCAvRP/R/SPCAvRP_deflation.R | 22 +- SPCAvRP-0.4/SPCAvRP/R/SPCAvRP_subspace.R | 177 ++++++++-------- SPCAvRP-0.4/SPCAvRP/man/SPCAvRP.Rd | 70 ++++-- SPCAvRP-0.4/SPCAvRP/man/SPCAvRP_deflation.Rd | 73 +++--- SPCAvRP-0.4/SPCAvRP/man/SPCAvRP_subspace.Rd | 85 ++++--- 21 files changed, 419 insertions(+), 235 deletions(-)
Title: DBI Connector to Presto
Description: Implements a 'DBI' compliant interface to Presto. Presto is
an open source distributed SQL query engine for running interactive
analytic queries against data sources of all sizes ranging from
gigabytes to petabytes: <https://prestodb.io/>.
Author: Onur Ismail Filiz [aut, cre],
Sergey Goder [aut],
John Myles White [ctb]
Maintainer: Onur Ismail Filiz <onur@fb.com>
Diff between RPresto versions 1.3.2 dated 2018-10-23 and 1.3.3 dated 2019-05-03
DESCRIPTION | 15 +++++++------- MD5 | 30 +++++++++++++++-------------- NEWS.md | 7 ++++++ R/db.explain.PrestoConnection.R | 2 - R/dbClearResult.R | 5 ++-- R/dbFetch.R | 10 +++++---- R/dbSendQuery.R | 22 ++++++--------------- R/request_headers.R |only R/sql_translate_env.R | 34 ++++++++++++++++++++------------- src/check_names.cpp | 1 src/transpose.cpp | 1 tests/testthat/test-dbFetch.R | 2 - tests/testthat/test-dbIsValid.R | 8 +++---- tests/testthat/test-dbSendQuery.R | 4 +-- tests/testthat/test-dplyr_as_type.R |only tests/testthat/test-translate_sql.R | 37 ++++++++++++++++++++++++++++++++++++ tests/testthat/utilities.R | 18 +++++++++++++++++ 17 files changed, 133 insertions(+), 63 deletions(-)
Title: Measurement Units for R Vectors
Description: Support for measurement units in R vectors, matrices
and arrays: automatic propagation, conversion, derivation
and simplification of units; raising errors in case of unit
incompatibility. Compatible with the POSIXct, Date and difftime
classes. Uses the UNIDATA udunits library and unit database for
unit compatibility checking and conversion.
Documentation about 'units' is provided in the paper by Pebesma, Mailund &
Hiebert (2016, <doi:10.32614/RJ-2016-061>), included in this package as a
vignette; see 'citation("units")' for details.
Author: Edzer Pebesma [aut, cre] (<https://orcid.org/0000-0001-8049-7069>),
Thomas Mailund [aut],
Tomasz Kalinowski [aut],
James Hiebert [ctb],
Iñaki Ucar [ctb] (<https://orcid.org/0000-0001-6403-5550>)
Maintainer: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Diff between units versions 0.6-2 dated 2018-12-05 and 0.6-3 dated 2019-05-03
units-0.6-2/units/inst/include |only units-0.6-2/units/src/units.h |only units-0.6-3/units/DESCRIPTION | 9 units-0.6-3/units/MD5 | 70 ++-- units-0.6-3/units/NAMESPACE | 1 units-0.6-3/units/NEWS.md | 10 units-0.6-3/units/R/RcppExports.R | 8 units-0.6-3/units/R/arith.R | 4 units-0.6-3/units/R/conversion.R | 3 units-0.6-3/units/R/init.R | 9 units-0.6-3/units/R/make_units.R | 25 + units-0.6-3/units/R/mixed.R | 4 units-0.6-3/units/R/symbolic_units.R | 2 units-0.6-3/units/R/user_conversion.R | 12 units-0.6-3/units/build/vignette.rds |binary units-0.6-3/units/configure | 27 - units-0.6-3/units/configure.ac | 9 units-0.6-3/units/inst/CITATION | 28 - units-0.6-3/units/inst/doc/measurement_units_in_R.Rmd | 6 units-0.6-3/units/inst/doc/measurement_units_in_R.html | 242 +++++++++++++--- units-0.6-3/units/inst/doc/units.html | 176 ++++++++--- units-0.6-3/units/man/drop_units.Rd | 18 + units-0.6-3/units/src/Makevars.in | 2 units-0.6-3/units/src/Makevars.win | 2 units-0.6-3/units/src/RcppExports.cpp | 47 +-- units-0.6-3/units/src/io.c | 8 units-0.6-3/units/src/udunits.cpp | 65 +--- units-0.6-3/units/tests/plot.R | 3 units-0.6-3/units/tests/testthat.R | 1 units-0.6-3/units/tests/testthat/test_conversion.R | 23 - units-0.6-3/units/tests/testthat/test_misc.R | 5 units-0.6-3/units/tests/testthat/test_mixed.R | 8 units-0.6-3/units/tests/testthat/test_udunits.R | 5 units-0.6-3/units/tests/testthat/test_unit_creation.R | 19 + units-0.6-3/units/tests/testthat/test_user_conversion.R | 14 units-0.6-3/units/vignettes/measurement_units_in_R.Rmd | 6 units-0.6-3/units/vignettes/measurement_units_in_R.bib | 11 37 files changed, 596 insertions(+), 286 deletions(-)
Title: Learn R, in R
Description: Use the R console as an interactive learning
environment. Users receive immediate feedback as they are guided through
self-paced lessons in data science and R programming.
Author: Sean Kross [aut, cre],
Nick Carchedi [aut],
Bill Bauer [aut],
Gina Grdina [aut],
Filip Schouwenaars [ctb],
Wush Wu [ctb]
Maintainer: Sean Kross <sean@seankross.com>
Diff between swirl versions 2.4.3 dated 2017-03-02 and 2.4.4 dated 2019-05-03
DESCRIPTION | 8 +-- MD5 | 86 ++++++++++++++++++------------------- NEWS.md | 4 + man/AnswerTests.Rd | 3 - man/InstallCourses.Rd | 2 man/any_of_exprs.Rd | 2 man/bye.Rd | 1 man/calculates_same_value.Rd | 2 man/delete_progress.Rd | 1 man/email_admin.Rd | 1 man/expr_creates_var.Rd | 2 man/expr_identical_to.Rd | 2 man/expr_is_a.Rd | 2 man/expr_uses_func.Rd | 2 man/func_of_newvar_equals.Rd | 2 man/info.Rd | 1 man/install_course.Rd | 2 man/install_course_directory.Rd | 2 man/install_course_dropbox.Rd | 2 man/install_course_github.Rd | 2 man/install_course_google_drive.Rd | 2 man/install_course_url.Rd | 2 man/install_course_zip.Rd | 2 man/install_from_swirl.Rd | 2 man/is_robust_match.Rd | 1 man/main.Rd | 1 man/nxt.Rd | 1 man/omnitest.Rd | 2 man/play.Rd | 1 man/reset.Rd | 1 man/restart.Rd | 1 man/rmatch_calls.Rd | 1 man/select_language.Rd | 1 man/skip.Rd | 1 man/submit.Rd | 1 man/swirl.Rd | 1 man/swirl_options.Rd | 1 man/uninstall_all_courses.Rd | 2 man/uninstall_course.Rd | 2 man/val_has_length.Rd | 2 man/val_matches.Rd | 2 man/var_is_a.Rd | 2 man/zip_course.Rd | 2 tests/testthat/test-encoding.R | 9 ++- 44 files changed, 81 insertions(+), 91 deletions(-)
Title: Survey Planning Tools
Description: Tools for sample survey planning, including sample size calculation, estimation of expected precision for the estimates of totals, and calculation of optimal sample size allocation.
Author: Juris Breidaks [aut, cre],
Martins Liberts [aut],
Janis Jukams [aut]
Maintainer: Juris Breidaks <rcsb@csb.gov.lv>
Diff between surveyplanning versions 2.9 dated 2017-10-26 and 3.0 dated 2019-05-03
surveyplanning-2.9/surveyplanning/man/surveyplanning-package.Rd |only surveyplanning-3.0/surveyplanning/DESCRIPTION | 15 surveyplanning-3.0/surveyplanning/MD5 | 47 +- surveyplanning-3.0/surveyplanning/NAMESPACE | 17 surveyplanning-3.0/surveyplanning/R/MoE_P.R | 33 + surveyplanning-3.0/surveyplanning/R/MoE_Y.R | 37 + surveyplanning-3.0/surveyplanning/R/dom_optimal_allocation.R | 149 ++++++- surveyplanning-3.0/surveyplanning/R/expsize.R | 109 +++-- surveyplanning-3.0/surveyplanning/R/expvar.R | 210 ++++++---- surveyplanning-3.0/surveyplanning/R/min_count.R | 42 ++ surveyplanning-3.0/surveyplanning/R/min_prop.R | 26 + surveyplanning-3.0/surveyplanning/R/optsize.R | 53 ++ surveyplanning-3.0/surveyplanning/R/prop_dom_optimal_allocation.R | 94 +++- surveyplanning-3.0/surveyplanning/R/round2.R |only surveyplanning-3.0/surveyplanning/R/s2.R | 38 + surveyplanning-3.0/surveyplanning/man/MoE_P.Rd | 34 - surveyplanning-3.0/surveyplanning/man/MoE_Y.Rd | 32 - surveyplanning-3.0/surveyplanning/man/dom_optimal_allocation.Rd | 194 ++++----- surveyplanning-3.0/surveyplanning/man/expsize.Rd | 72 +-- surveyplanning-3.0/surveyplanning/man/expvar.Rd | 121 ++--- surveyplanning-3.0/surveyplanning/man/min_count.Rd | 34 - surveyplanning-3.0/surveyplanning/man/min_prop.Rd | 32 - surveyplanning-3.0/surveyplanning/man/optsize.Rd | 67 +-- surveyplanning-3.0/surveyplanning/man/prop_dom_optimal_allocation.Rd | 105 ++--- surveyplanning-3.0/surveyplanning/man/round2.Rd |only surveyplanning-3.0/surveyplanning/man/s2.Rd | 28 - 26 files changed, 1003 insertions(+), 586 deletions(-)
More information about surveyplanning at CRAN
Permanent link
Title: Functions and Data for "Epidemics: Models and Data in R"
Description: Functions, data sets and shinyApps for "Epidemics: Models and Data in R" by Ottar N. Bjornstad (ISBN 978-3-319-97487-3) <https://www.springer.com/gp/book/9783319974866>. The package contains functions to study the S(E)IR model, spatial and age-structured SIR models; time-series SIR and chain-binomial stochastic models; catalytic disease models; coupled map lattice models of spatial transmission and network models for social spread of infection. The package is also an advanced quantitative companion to the coursera Epidemics Massive Online Open Course <https://www.coursera.org/learn/epidemics>.
Author: Ottar N. Bjornstad [aut, cre]
Maintainer: Ottar N. Bjornstad <onb1@psu.edu>
Diff between epimdr versions 0.6-2 dated 2019-01-17 and 0.6-3 dated 2019-05-03
CHANGES |only DESCRIPTION | 12 MD5 | 20 NAMESPACE | 5 R/rfuncs.R | 1117 ------------------------------------------------------- R/shiny.r |only man/May.app.Rd | 2 man/SEIR.app.Rd | 2 man/SEIRS.app.Rd | 2 man/SIR.app.Rd | 2 man/TSIR.app.Rd | 2 man/orv.app.Rd | 2 12 files changed, 24 insertions(+), 1142 deletions(-)
Title: Fast and Versatile Argument Checks
Description: Tests and assertions to perform frequent argument checks. A
substantial part of the package was written in C to minimize any worries
about execution time overhead.
Author: Michel Lang [cre, aut] (<https://orcid.org/0000-0001-9754-0393>),
Bernd Bischl [ctb]
Maintainer: Michel Lang <michellang@gmail.com>
Diff between checkmate versions 1.9.1 dated 2019-01-15 and 1.9.3 dated 2019-05-03
DESCRIPTION | 6 - LICENSE | 2 MD5 | 62 +++++++++---------- NAMESPACE | 1 NEWS.md | 11 +++ R/checkChoice.R | 2 R/checkDataFrame.R | 2 R/checkNames.R | 9 +- R/checkPathForOutput.R | 10 ++- R/checkSetEqual.R | 2 R/checkSubset.R | 2 R/checkVector.R | 6 - R/makeAssertion.R | 2 R/vname.R | 2 build/vignette.rds |binary inst/doc/checkmate.html | 110 ++++++++++++++++------------------ man/checkDataFrame.Rd | 2 man/checkNames.Rd | 26 +++++--- man/checkPathForOutput.Rd | 23 ++++--- man/checkVector.Rd | 14 ---- src/checks.c | 42 ++++++------ src/checks.h | 2 src/init.c | 4 - tests/testthat/helper.R | 13 ++-- tests/testthat/test_checkChoice.R | 5 + tests/testthat/test_checkDataFrame.R | 13 ++-- tests/testthat/test_checkDisjunct.R | 5 + tests/testthat/test_checkFilesystem.R | 3 tests/testthat/test_checkInt.R | 4 + tests/testthat/test_checkNames.R | 4 + tests/testthat/test_checkSetEqual.R | 5 + tests/testthat/test_checkSubset.R | 5 + 32 files changed, 224 insertions(+), 175 deletions(-)
Title: Interface to the 'USGS' 'BISON' API
Description: Interface to the 'USGS' 'BISON' (<https://bison.usgs.gov/>)
API, a 'database' for species occurrence data. Data comes from
species in the United States from participating data providers. You can get
data via 'taxonomic' and location based queries. A simple function
is provided to help visualize data.
Author: Scott Chamberlain [aut, cre] (<https://orcid.org/0000-0003-1444-9135>)
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between rbison versions 0.7.0 dated 2018-10-25 and 0.8.0 dated 2019-05-03
DESCRIPTION | 12 LICENSE | 2 MD5 | 44 - NEWS.md | 9 R/zzz.R | 3 README.md | 87 +-- build/vignette.rds |binary inst/doc/other_functions.Rmd | 454 ++++++++-------- inst/doc/other_functions.html | 454 ++++++++-------- inst/doc/rbison_vignette.Rmd | 258 +++++---- inst/doc/rbison_vignette.html | 266 +++++---- tests/fixtures/bison.yml | 1150 ----------------------------------------- tests/testthat/Rplots.pdf |binary tests/testthat/test-bison.R | 24 tests/testthat/test-is.bison.R | 8 tools/unnamed-chunk-10-1.png |binary tools/unnamed-chunk-13-1.png |binary tools/unnamed-chunk-14-1.png |binary tools/unnamed-chunk-15-1.png |binary tools/unnamed-chunk-19-1.png |binary tools/unnamed-chunk-7-1.png |binary vignettes/other_functions.Rmd | 454 ++++++++-------- vignettes/rbison_vignette.Rmd | 258 +++++---- 23 files changed, 1243 insertions(+), 2240 deletions(-)
Title: Interface to the Search API for 'PLoS' Journals
Description: A programmatic interface to the 'SOLR' based
search API (<http://api.plos.org/>) provided by the Public
Library of Science journals to search their articles.
Functions are included for searching for articles, retrieving
articles, making plots, doing 'faceted' searches,
'highlight' searches, and viewing results of 'highlighted'
searches in a browser.
Author: Scott Chamberlain [aut, cre] (<https://orcid.org/0000-0003-1444-9135>),
Carl Boettiger [aut],
Karthik Ram [aut]
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between rplos versions 0.8.4 dated 2018-08-14 and 0.8.6 dated 2019-05-03
DESCRIPTION | 14 +- LICENSE | 2 MD5 | 48 +++---- NEWS.md | 8 + README.md | 134 ++++++++++---------- build/vignette.rds |binary inst/doc/facethighlight.Rmd | 36 ++--- inst/doc/facethighlight.html | 36 ++--- inst/doc/fulltext.Rmd | 50 +++---- inst/doc/fulltext.html | 50 +++---- inst/doc/rplos_vignette.Rmd | 88 ++++++------- inst/doc/rplos_vignette.html | 92 ++++++------- inst/vign/facethighlight.md | 36 ++--- inst/vign/figure/plosword1plot-1.png |binary inst/vign/figure/throughtime1-1.png |binary inst/vign/fulltext.md | 50 +++---- inst/vign/rplos_vignette.md | 88 ++++++------- tests/fixtures/vcr_cassettes/plosabstract_class.yml | 92 ++++++------- tests/fixtures/vcr_cassettes/plosfigtabcaps.yml | 106 +++------------ tests/testthat/test-plosabstract.R | 1 tests/testthat/test-plosfigtabcaps.R | 23 +-- tools/unnamed-chunk-21-1.png |binary vignettes/facethighlight.Rmd | 36 ++--- vignettes/fulltext.Rmd | 50 +++---- vignettes/rplos_vignette.Rmd | 88 ++++++------- 25 files changed, 534 insertions(+), 594 deletions(-)
Title: Tools for Interacting with 'PostgreSQL' / 'PostGIS' Databases
Description: Functions to convert geometry and 'hstore' data types from
'PostgreSQL' into standard R objects, as well as to simplify
the import of R data frames (including spatial data frames) into 'PostgreSQL'.
Note: This package is deprecated. For new projects, we recommend
using the 'sf' package to interface with geodatabases.
Author: Philippe Marchand [aut, cre],
Richard Ellison [aut]
Maintainer: Philippe Marchand <marchand.philippe@gmail.com>
Diff between postGIStools versions 0.2.2 dated 2018-03-28 and 0.2.3 dated 2019-05-03
DESCRIPTION | 8 MD5 | 14 NEWS.md | 10 build/vignette.rds |binary inst/doc/postGIStools-vignette.html | 646 ++++++++++++++++++++++++------------ man/postgis_insert_update.Rd | 9 tests/testthat/test_get_query.R | 1 tests/testthat/test_insert_update.R | 40 -- 8 files changed, 485 insertions(+), 243 deletions(-)
Title: Adaptive Subgroup Selection in Group Sequential Trials
Description: Clinical trial design for subgroup selection in three-stage group
sequential trial. Includes facilities for design, exploration and analysis of
such trials. An implementation of the initial DEFUSE-3 trial is also provided
as a vignette.
Author: Tze Leung Lai [ctb],
Philip Lavori [aut],
Olivia Liao [aut],
Balasubramanian Narasimhan [aut, cre],
Ka Wai Tsang [aut]
Maintainer: Balasubramanian Narasimhan <naras@stat.Stanford.EDU>
Diff between ASSISTant versions 1.2-3 dated 2016-05-03 and 1.4.2 dated 2019-05-03
DESCRIPTION | 17 MD5 | 75 - NAMESPACE | 23 NEWS.md |only R/ASSISTDesigns.R | 1836 ++++++++++++++++++-------------- R/ASSISTant.R | 4 R/utilities.R |only README.md | 22 build/vignette.rds |binary data/LLL.SETTINGS.rda |binary inst/doc/ASSISTant.Rmd | 24 inst/doc/ASSISTant.html | 2185 +++++++++++++++++++++++++------------- inst/doc/Rankin.R |only inst/doc/Rankin.Rmd |only inst/doc/Rankin.html |only inst/doc/defuse3.R | 118 +- inst/doc/defuse3.Rmd | 162 ++ inst/doc/defuse3.html | 1011 ++++++++++++----- inst/full_doc/ASSISTant.Rmd | 51 inst/full_doc/ASSISTant.html | 2436 ++++++++++++++++++++++++++++--------------- inst/full_doc/assistant.bib |only inst/full_doc/coverage.R |only inst/full_doc/coverage.Rmd |only inst/full_doc/coverage.html |only inst/full_doc/defuse3.R | 32 inst/full_doc/defuse3.Rmd | 32 inst/full_doc/defuse3.html | 870 ++++++++++----- man/ASSISTDesign.Rd | 42 man/ASSISTDesignB.Rd | 38 man/ASSISTDesignC.Rd | 35 man/ASSISTant-internal.Rd | 45 man/ASSISTant.Rd | 1 man/DEFUSE3Design.Rd | 47 man/LLL.SETTINGS.Rd | 55 man/colNamesForStage.Rd |only man/computeMHPBoundaries.Rd |only man/computeMHPBoundaryITT.Rd |only man/computeMeanAndSD.Rd |only man/generateDiscreteData.Rd |only man/generateNormalData.Rd |only man/groupSampleSize.Rd |only man/mHP.b.Rd |only man/mHP.btilde.Rd |only man/mHP.c.Rd |only man/wilcoxon.Rd |only vignettes/ASSISTant.Rmd | 24 vignettes/Rankin.Rmd |only vignettes/assistant.bib | 4 vignettes/defuse3.Rmd | 162 ++ 49 files changed, 6044 insertions(+), 3307 deletions(-)
Title: Multiply Robust Methods for Missing Data Problems
Description: Multiply robust estimation for population mean (Han and Wang 2013) <doi:10.1093/biomet/ass087>, regression analysis (Han 2014) <doi:10.1080/01621459.2014.880058> (Han 2016) <doi:10.1111/sjos.12177> and quantile regression (Han et al. 2019) <doi:10.1111/rssb.12309>.
Author: Shixiao Zhang and Peisong Han
Maintainer: Shixiao Zhang <praetere@gmail.com>
Diff between MultiRobust versions 1.0.3 dated 2019-03-15 and 1.0.4 dated 2019-05-03
DESCRIPTION | 6 +- MD5 | 18 +++---- R/MR.mean.r | 91 +++++++++++++++++++++--------------- R/MR.quantile.r | 132 ++++++++++++++++++++++++++++++----------------------- R/MR.quantreg.r | 43 +++++++++++------ R/MR.reg.r | 44 +++++++++++------ man/MR.mean.Rd | 21 +++++--- man/MR.quantile.Rd | 21 +++++--- man/MR.quantreg.Rd | 16 ++++-- man/MR.reg.Rd | 14 ++++- 10 files changed, 247 insertions(+), 159 deletions(-)
Title: Supplementary Item Response Theory Models
Description: Supplementary functions for item response models aiming
to complement existing R packages. The functionality includes among others
multidimensional compensatory and noncompensatory IRT models
(Reckase, 2009, <doi:10.1007/978-0-387-89976-3>),
MCMC for hierarchical IRT models and testlet models
(Fox, 2010, <doi:10.1007/978-1-4419-0742-4>),
NOHARM (McDonald, 1982, <doi:10.1177/014662168200600402>),
Rasch copula model (Braeken, 2011, <doi:10.1007/s11336-010-9190-4>;
Schroeders, Robitzsch & Schipolowski, 2014, <doi:10.1111/jedm.12054>),
faceted and hierarchical rater models (DeCarlo, Kim & Johnson, 2011,
<doi:10.1111/j.1745-3984.2011.00143.x>),
ordinal IRT model (ISOP; Scheiblechner, 1995, <doi:10.1007/BF02301417>),
DETECT statistic (Stout, Habing, Douglas & Kim, 1996,
<doi:10.1177/014662169602000403>), local structural equation modeling
(LSEM; Hildebrandt, Luedtke, Robitzsch, Sommer & Wilhelm, 2016,
<doi:10.1080/00273171.2016.1142856>).
Author: Alexander Robitzsch [aut,cre] (<https://orcid.org/0000-0002-8226-3132>)
Maintainer: Alexander Robitzsch <robitzsch@ipn.uni-kiel.de>
Diff between sirt versions 3.3-26 dated 2019-03-18 and 3.4-64 dated 2019-05-03
sirt-3.3-26/sirt/inst/include |only sirt-3.3-26/sirt/src/polychoric2_tetrachoric2_rcpp.cpp |only sirt-3.4-64/sirt/DESCRIPTION | 18 sirt-3.4-64/sirt/MD5 | 210 ++- sirt-3.4-64/sirt/NAMESPACE | 50 sirt-3.4-64/sirt/R/IRT.mle.R | 30 sirt-3.4-64/sirt/R/Probtrace_sirt.R | 5 sirt-3.4-64/sirt/R/R2conquest.R | 4 sirt-3.4-64/sirt/R/R2noharm.EAP.R | 29 sirt-3.4-64/sirt/R/RcppExports.R | 58 - sirt-3.4-64/sirt/R/ccov.np.R | 5 sirt-3.4-64/sirt/R/class.accuracy.rasch.R | 8 sirt-3.4-64/sirt/R/f1d.irt.R | 30 sirt-3.4-64/sirt/R/fit.logistic.R | 54 - sirt-3.4-64/sirt/R/fuzcluster_alg.R | 4 sirt-3.4-64/sirt/R/ginverse_sym.R | 14 sirt-3.4-64/sirt/R/gom.em.R | 5 sirt-3.4-64/sirt/R/gom.em.alg.R | 6 sirt-3.4-64/sirt/R/greenyang.reliability.R | 25 sirt-3.4-64/sirt/R/invariance.alignment.R | 5 sirt-3.4-64/sirt/R/invariance_alignment_cfa_config_estimate.R | 6 sirt-3.4-64/sirt/R/latent.regression.em.raschtype.R | 42 sirt-3.4-64/sirt/R/lavaan2mirt.R | 8 sirt-3.4-64/sirt/R/lavaan_object_adjust_sample_size.R |only sirt-3.4-64/sirt/R/likelihood_adjustment_aux.R | 18 sirt-3.4-64/sirt/R/linking.haebara.R | 4 sirt-3.4-64/sirt/R/lsem.bootstrap.R |only sirt-3.4-64/sirt/R/lsem.estimate.R | 159 +- sirt-3.4-64/sirt/R/lsem_bootstrap_draw_bootstrap_sample.R |only sirt-3.4-64/sirt/R/lsem_bootstrap_inference.R |only sirt-3.4-64/sirt/R/lsem_bootstrap_postproc_output.R |only sirt-3.4-64/sirt/R/lsem_bootstrap_print_progress.R |only sirt-3.4-64/sirt/R/lsem_bootstrap_print_start.R |only sirt-3.4-64/sirt/R/lsem_define_lavaan_est_fun.R | 3 sirt-3.4-64/sirt/R/lsem_estimate_proc_args.R |only sirt-3.4-64/sirt/R/lsem_fit_initial_model.R |only sirt-3.4-64/sirt/R/lsem_fit_initial_model_sufficient_statistics.R |only sirt-3.4-64/sirt/R/lsem_fitsem.R | 154 +- sirt-3.4-64/sirt/R/lsem_fitsem_compute_sufficient_statistics.R |only sirt-3.4-64/sirt/R/lsem_fitsem_joint_estimation_partable.R |only sirt-3.4-64/sirt/R/lsem_fitsem_joint_estimation_partable_id.R |only sirt-3.4-64/sirt/R/lsem_fitsem_joint_estimation_prepare_partable.R |only sirt-3.4-64/sirt/R/lsem_fitsem_joint_estimation_prepare_partable_include_group_label.R |only sirt-3.4-64/sirt/R/lsem_fitsem_joint_estimation_sufficient_statistics.R |only sirt-3.4-64/sirt/R/lsem_fitsem_raw_data_define_pseudo_weights.R | 8 sirt-3.4-64/sirt/R/lsem_fitsem_raw_data_lavaan.R |only sirt-3.4-64/sirt/R/lsem_fitsem_raw_data_lavaan_survey.R | 3 sirt-3.4-64/sirt/R/lsem_fitsem_sufficient_statistics_lavaan.R |only sirt-3.4-64/sirt/R/lsem_fitsem_verbose_progress.R |only sirt-3.4-64/sirt/R/lsem_fitsem_verbose_start.R |only sirt-3.4-64/sirt/R/lsem_kernel_weights.R |only sirt-3.4-64/sirt/R/lsem_lavaan_fit_measures.R |only sirt-3.4-64/sirt/R/lsem_lavaan_modify_lavaan_object_test.R |only sirt-3.4-64/sirt/R/lsem_local_weights.R | 36 sirt-3.4-64/sirt/R/lsem_parameter_summary.R | 9 sirt-3.4-64/sirt/R/lsem_residualize.R | 39 sirt-3.4-64/sirt/R/lsem_weighted_cov.R | 17 sirt-3.4-64/sirt/R/lsem_weighted_mean.R | 10 sirt-3.4-64/sirt/R/lsem_wtdSD.R | 12 sirt-3.4-64/sirt/R/marginal.truescore.reliability.R | 9 sirt-3.4-64/sirt/R/mcmc.2pno.R | 4 sirt-3.4-64/sirt/R/mcmc.2pno.ml_output.R | 6 sirt-3.4-64/sirt/R/mcmc.2pnoh.R | 4 sirt-3.4-64/sirt/R/mcmc.3pno.testlet_output.R | 4 sirt-3.4-64/sirt/R/mcmc.list.descriptives.R | 4 sirt-3.4-64/sirt/R/mcmc_WaldTest.R | 30 sirt-3.4-64/sirt/R/mcmc_derivedPars.R | 5 sirt-3.4-64/sirt/R/mcmc_summary.R | 4 sirt-3.4-64/sirt/R/mcmc_vcov.R | 5 sirt-3.4-64/sirt/R/mirt.model.vars.R | 73 - sirt-3.4-64/sirt/R/mirt.wrapper.itemplot.R | 13 sirt-3.4-64/sirt/R/mirt.wrapper.posterior.R | 16 sirt-3.4-64/sirt/R/noharm.sirt.R | 4 sirt-3.4-64/sirt/R/normal2.cw.R | 7 sirt-3.4-64/sirt/R/pbivnorm2.R | 6 sirt-3.4-64/sirt/R/plausible.values.raschtype.R | 6 sirt-3.4-64/sirt/R/polychoric2.R | 49 sirt-3.4-64/sirt/R/rasch.copula3.R | 6 sirt-3.4-64/sirt/R/rasch.copula3.covariance.R | 5 sirt-3.4-64/sirt/R/rasch.mirtlc_aux.R | 5 sirt-3.4-64/sirt/R/rasch.mml.R | 8 sirt-3.4-64/sirt/R/rasch.mml.ramsay.R | 12 sirt-3.4-64/sirt/R/rasch.mml.raschtype.R | 46 sirt-3.4-64/sirt/R/rasch.mml2.R | 116 -- sirt-3.4-64/sirt/R/rasch.pml_aux.R | 6 sirt-3.4-64/sirt/R/reliability.nonlinear.sem.R | 8 sirt-3.4-64/sirt/R/rm_numdiff_index.R | 8 sirt-3.4-64/sirt/R/rm_sdt_evaluate_prior.R | 6 sirt-3.4-64/sirt/R/rm_sdt_evaluate_prior_derivative.R | 6 sirt-3.4-64/sirt/R/sirt_antifisherz.R | 4 sirt-3.4-64/sirt/R/sirt_define_vector.R |only sirt-3.4-64/sirt/R/sirt_dmvnorm.R |only sirt-3.4-64/sirt/R/sirt_dmvnorm_discrete.R |only sirt-3.4-64/sirt/R/sirt_dnorm.R |only sirt-3.4-64/sirt/R/sirt_dnorm_discrete.R | 6 sirt-3.4-64/sirt/R/sirt_fisherz.R | 4 sirt-3.4-64/sirt/R/sirt_import_MASS_ginv.R |only sirt-3.4-64/sirt/R/sirt_import_coda_as.mcmc.list.R |only sirt-3.4-64/sirt/R/sirt_import_coda_effectiveSize.R |only sirt-3.4-64/sirt/R/sirt_import_coda_mcmc.R |only sirt-3.4-64/sirt/R/sirt_import_function_value.R |only sirt-3.4-64/sirt/R/sirt_import_lavaan_cfa.R |only sirt-3.4-64/sirt/R/sirt_import_lavaan_fitMeasures.R |only sirt-3.4-64/sirt/R/sirt_import_lavaan_lavaanify.R |only sirt-3.4-64/sirt/R/sirt_import_lavaan_parameterEstimates.R |only sirt-3.4-64/sirt/R/sirt_import_lavaan_parameterTable.R |only sirt-3.4-64/sirt/R/sirt_import_lavaan_standardizedSolution.R |only sirt-3.4-64/sirt/R/sirt_import_psych_cor.smooth.R |only sirt-3.4-64/sirt/R/sirt_import_psych_fa.R |only sirt-3.4-64/sirt/R/sirt_import_psych_omega.R |only sirt-3.4-64/sirt/R/sirt_lavaan_partable_parnames.R |only sirt-3.4-64/sirt/R/sirt_pmvnorm.R |only sirt-3.4-64/sirt/R/smirt.R | 5 sirt-3.4-64/sirt/R/smirt_alg_noncomp.R | 8 sirt-3.4-64/sirt/R/summary.lsem.R | 42 sirt-3.4-64/sirt/R/summary.mcmc_WaldTest.R |only sirt-3.4-64/sirt/R/tetrachoric2.R | 45 sirt-3.4-64/sirt/R/xxirt.R | 7 sirt-3.4-64/sirt/R/xxirt_compute_posterior.R | 15 sirt-3.4-64/sirt/build/partial.rdb |binary sirt-3.4-64/sirt/inst/NEWS | 46 sirt-3.4-64/sirt/man/invariance.alignment.Rd | 22 sirt-3.4-64/sirt/man/lsem.estimate.Rd | 134 ++ sirt-3.4-64/sirt/man/polychoric2.Rd | 24 sirt-3.4-64/sirt/man/sirt-utilities.Rd | 4 sirt-3.4-64/sirt/src/RcppExports.cpp | 531 ++-------- sirt-3.4-64/sirt/src/sirt_rcpp_invariance_alignment.cpp | 20 sirt-3.4-64/sirt/src/sirt_rcpp_linking_haebara.cpp | 4 sirt-3.4-64/sirt/src/sirt_rcpp_polychoric2.cpp |only 129 files changed, 1233 insertions(+), 1257 deletions(-)
Title: Build Dirichlet Process Objects for Bayesian Modelling
Description: Perform nonparametric Bayesian analysis using Dirichlet
processes without the need to program the inference algorithms.
Utilise included pre-built models or specify custom
models and allow the 'dirichletprocess' package to handle the
Markov chain Monte Carlo sampling.
Our Dirichlet process objects can act as building blocks for a variety
of statistical models including and not limited to: density estimation,
clustering and prior distributions in hierarchical models.
See Teh, Y. W. (2011)
<https://www.stats.ox.ac.uk/~teh/research/npbayes/Teh2010a.pdf>,
among many other sources.
Author: Gordon J. Ross [aut],
Dean Markwick [aut, cre],
Kees Mulder [ctb] (<https://orcid.org/0000-0002-5387-3812>)
Maintainer: Dean Markwick <dean.markwick@talk21.com>
Diff between dirichletprocess versions 0.2.2 dated 2018-11-23 and 0.3.0 dated 2019-05-03
DESCRIPTION | 6 - MD5 | 120 +++++++++++++++---------- NAMESPACE | 48 ++++++++++ NEWS.md | 8 + R/beta_uniform_gamma.R | 33 ++++-- R/beta_uniform_pareto.R |only R/burn.R |only R/change_observations.R | 6 - R/cluster_component_update.R | 10 +- R/cluster_parameter_update.R | 17 +++ R/diagnostic_plots.R |only R/dirichlet_hmm_create.R |only R/dirichlet_process_beta_2.R |only R/exponential_gamma.R | 20 ++-- R/fit.R | 9 - R/fit_hmm.R |only R/mixing_distribution_penalised_likelihood.R | 12 ++ R/mixing_distribution_posterior_draw.R | 7 + R/mixing_distribution_prior_density.R | 4 R/mvnormal_normal_wishart.R | 46 ++++++--- R/mvnormal_semi_conjugate.R | 36 ++++--- R/normal_inverse_gamma.R | 45 ++++++--- R/posterior.R | 5 - R/posterior_clusters.R | 2 R/print.R |only R/update_alpha.R | 5 - R/update_alpha_beta.R |only R/update_concentration.R | 20 ++-- R/update_g0.R | 7 - R/update_states.R |only R/utilities.R | 3 R/weibull_uniform_gamma.R | 25 +++-- README.md | 59 ++++++++---- inst/doc/dirichletprocess.R | 2 inst/doc/dirichletprocess.Rnw | 8 - inst/doc/dirichletprocess.pdf |binary man/BetaMixture2Create.Rd |only man/Burn.Rd |only man/ClusterComponentUpdate.Rd | 6 + man/DiagnosticPlots.Rd |only man/DirichletHMMCreate.Rd |only man/DirichletProcessBeta2.Rd |only man/Fit.Rd | 2 man/Fit.markov.Rd |only man/GaussianMixtureCreate.Rd | 2 man/Likelihood.Rd | 25 ++++- man/PenalisedLikelihood.Rd |only man/PosteriorDraw.Rd | 22 ++++ man/PosteriorParameters.Rd | 9 + man/Predictive.Rd | 15 ++- man/PriorDensity.Rd | 18 ++- man/PriorDraw.Rd | 28 +++++ man/PriorParametersUpdate.Rd | 11 +- man/UpdateAlpha.Rd | 6 + man/UpdateAlphaBeta.Rd |only man/print.dirichletprocess.Rd |only tests/testthat/test_beta_uniform_gamma.R | 10 +- tests/testthat/test_beta_uniform_pareto.R |only tests/testthat/test_change_observations.R | 22 ++++ tests/testthat/test_dirichlet_hmm.R |only tests/testthat/test_dirichlet_process_beta_2.R |only tests/testthat/test_plot.R | 14 ++ tests/testthat/test_print.R |only tests/testthat/test_update_alpha_beta.R |only tests/testthat/test_update_states.R |only tests/testthat/test_utilities.R | 12 ++ vignettes/Code/custom_models.R | 2 vignettes/Code/generate_graphs.R | 5 + vignettes/dirichletprocess.Rnw | 8 - vignettes/dirichletprocess.bib | 82 ++++++++--------- vignettes/img/clustering-1.png |only vignettes/img/clusteringplot-1.png |binary vignettes/img/density-1.png |binary vignettes/jsslogo.jpg |only 74 files changed, 624 insertions(+), 238 deletions(-)
More information about dirichletprocess at CRAN
Permanent link
Title: Directional Penalties for Optimal Matching in Observational
Studies
Description: Improves the balance of optimal matching with near-fine balance by giving penalties on the unbalanced covariates with the unbalanced directions. Many directional penalties can also be viewed as Lagrange multipliers, pushing a matched sample in the direction of satisfying a linear constraint that would not be satisfied without penalization.
Rosenbaum, P.R. (1989). <DOI:10.1080/01621459.1989.10478868>.
Yang, D., Small, D. S., Silber, J. H., and Rosenbaum, P. R. (2012). <DOI:10.1111/j.1541-0420.2011.01691.x>.
Author: Ruoqi Yu
Maintainer: Ruoqi Yu <ruoqiyu@wharton.upenn.edu>
Diff between DiPs versions 0.2.0 dated 2018-12-09 and 0.3.0 dated 2019-05-03
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- R/maha_dense.R | 2 +- R/match.R | 8 ++------ man/match.Rd | 9 ++++----- 5 files changed, 14 insertions(+), 19 deletions(-)
Title: Sample Selection Models
Description: Two-step
and maximum likelihood estimation
of Heckman-type sample selection models:
standard sample selection models (Tobit-2),
endogenous switching regression models (Tobit-5),
sample selection models with binary dependent outcome variable,
interval regression with sample selection (only ML estimation),
and endogenous treatment effects models.
These methods are described in the three vignettes
that are included in this package
and in econometric textbooks such as
Greene (2011, Econometric Analysis, 7th edition, Pearson).
Author: Arne Henningsen [aut, cre],
Ott Toomet [aut],
Sebastian Petersen [ctb]
Maintainer: Arne Henningsen <arne.henningsen@gmail.com>
Diff between sampleSelection versions 1.2-2 dated 2019-02-19 and 1.2-6 dated 2019-05-03
DESCRIPTION | 14 - MD5 | 34 +-- NAMESPACE | 2 NEWS | 9 R/binaryChoice.R | 2 R/invMillsRatio.R | 4 build/vignette.rds |binary inst/doc/intReg.pdf |binary inst/doc/selection.pdf |binary inst/doc/treatReg.pdf |binary tests/binarySelectionOutcome.R | 68 ------ tests/binarySelectionOutcome.Rout.save | 329 --------------------------------- tests/intervalTest.R | 32 --- tests/intervalTest.Rout.save | 155 --------------- tests/invMillsRatioTest.R | 7 tests/invMillsRatioTest.Rout.save | 45 ---- tests/selection.R | 3 tests/selection.Rout.save | 9 18 files changed, 57 insertions(+), 656 deletions(-)
More information about sampleSelection at CRAN
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More information about paws.security.identity at CRAN
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Title: A Toolkit for Using Whole Building Simulation Program
'EnergyPlus'
Description: A rich toolkit of using the whole building simulation program
'EnergyPlus'(<https://energyplus.net>), which enables programmatic
navigation, modification of 'EnergyPlus' models and makes it less painful to
do parametric simulations and analysis.
Author: Hongyuan Jia [aut, cre] (<https://orcid.org/0000-0002-0075-8183>)
Maintainer: Hongyuan Jia <hongyuanjia@cqu.edu.cn>
Diff between eplusr versions 0.9.4 dated 2018-12-05 and 0.10.0 dated 2019-05-03
eplusr-0.10.0/eplusr/DESCRIPTION | 23 eplusr-0.10.0/eplusr/LICENSE | 2 eplusr-0.10.0/eplusr/MD5 | 144 eplusr-0.10.0/eplusr/NAMESPACE | 131 eplusr-0.10.0/eplusr/NEWS.md | 254 + eplusr-0.10.0/eplusr/R/assertions.R | 567 ++- eplusr-0.10.0/eplusr/R/constants.R | 152 eplusr-0.10.0/eplusr/R/eplusr.R | 187 eplusr-0.10.0/eplusr/R/epw.R | 2068 ++++++----- eplusr-0.10.0/eplusr/R/err.R |only eplusr-0.10.0/eplusr/R/format.R | 1372 +++++-- eplusr-0.10.0/eplusr/R/idd.R | 707 ++- eplusr-0.10.0/eplusr/R/idd_object.R | 1104 ++++- eplusr-0.10.0/eplusr/R/idf.R | 2505 ++++++++++--- eplusr-0.10.0/eplusr/R/idf_object.R | 1290 +++++- eplusr-0.10.0/eplusr/R/impl-epw.R |only eplusr-0.10.0/eplusr/R/impl-idd.R |only eplusr-0.10.0/eplusr/R/impl-iddobj.R |only eplusr-0.10.0/eplusr/R/impl-idf.R |only eplusr-0.10.0/eplusr/R/impl-idfobj.R |only eplusr-0.10.0/eplusr/R/impl-sql.R |only eplusr-0.10.0/eplusr/R/impl.R | 3753 -------------------- eplusr-0.10.0/eplusr/R/install.R | 125 eplusr-0.10.0/eplusr/R/job.R | 639 ++- eplusr-0.10.0/eplusr/R/param.R | 540 +- eplusr-0.10.0/eplusr/R/parse.R | 2536 +++++++------ eplusr-0.10.0/eplusr/R/run.R | 77 eplusr-0.10.0/eplusr/R/sql.R | 536 +- eplusr-0.10.0/eplusr/R/units.R | 714 --- eplusr-0.10.0/eplusr/R/utils.R | 360 + eplusr-0.10.0/eplusr/R/validate.R | 956 +++-- eplusr-0.10.0/eplusr/R/zzz.R | 4 eplusr-0.10.0/eplusr/README.md | 468 +- eplusr-0.10.0/eplusr/build/vignette.rds |binary eplusr-0.10.0/eplusr/inst/doc/eplusr.R | 276 - eplusr-0.10.0/eplusr/inst/doc/eplusr.Rmd | 613 +-- eplusr-0.10.0/eplusr/inst/doc/eplusr.html | 2310 ++++++------ eplusr-0.10.0/eplusr/man/EplusJob.Rd | 252 - eplusr-0.10.0/eplusr/man/EplusSql.Rd | 226 + eplusr-0.10.0/eplusr/man/Epw.Rd | 690 ++- eplusr-0.10.0/eplusr/man/Idd.Rd | 132 eplusr-0.10.0/eplusr/man/IddObject.Rd | 418 +- eplusr-0.10.0/eplusr/man/Idf.Rd | 1265 ++++-- eplusr-0.10.0/eplusr/man/IdfObject.Rd | 552 +- eplusr-0.10.0/eplusr/man/ParametricJob.Rd | 190 - eplusr-0.10.0/eplusr/man/as.character.IddObject.Rd |only eplusr-0.10.0/eplusr/man/as.character.Idf.Rd |only eplusr-0.10.0/eplusr/man/as.character.IdfObject.Rd |only eplusr-0.10.0/eplusr/man/assertion.Rd |only eplusr-0.10.0/eplusr/man/custom_validate.Rd |only eplusr-0.10.0/eplusr/man/download_weather.Rd | 2 eplusr-0.10.0/eplusr/man/empty_idf.Rd |only eplusr-0.10.0/eplusr/man/eplus_sql.Rd | 6 eplusr-0.10.0/eplusr/man/eplusr_option.Rd | 33 eplusr-0.10.0/eplusr/man/format.IddObject.Rd |only eplusr-0.10.0/eplusr/man/format.Idf.Rd |only eplusr-0.10.0/eplusr/man/format.IdfObject.Rd |only eplusr-0.10.0/eplusr/man/idd_object.Rd |only eplusr-0.10.0/eplusr/man/idf_object.Rd |only eplusr-0.10.0/eplusr/man/level_checks.Rd |only eplusr-0.10.0/eplusr/man/print.ErrFile.Rd |only eplusr-0.10.0/eplusr/man/read_epw.Rd | 10 eplusr-0.10.0/eplusr/man/read_err.Rd |only eplusr-0.10.0/eplusr/man/read_idf.Rd | 12 eplusr-0.10.0/eplusr/man/run_model.Rd | 2 eplusr-0.10.0/eplusr/man/use_eplus.Rd | 3 eplusr-0.10.0/eplusr/man/use_idd.Rd | 12 eplusr-0.10.0/eplusr/tests/testthat.R | 1 eplusr-0.10.0/eplusr/tests/testthat/helper-cnd.R |only eplusr-0.10.0/eplusr/tests/testthat/helper-copy.R | 4 eplusr-0.10.0/eplusr/tests/testthat/helper-text.R |only eplusr-0.10.0/eplusr/tests/testthat/test-idfobj.R |only eplusr-0.10.0/eplusr/tests/testthat/test_assert.R |only eplusr-0.10.0/eplusr/tests/testthat/test_epw.R | 253 + eplusr-0.10.0/eplusr/tests/testthat/test_format.R |only eplusr-0.10.0/eplusr/tests/testthat/test_idd.R | 509 -- eplusr-0.10.0/eplusr/tests/testthat/test_iddobj.R |only eplusr-0.10.0/eplusr/tests/testthat/test_idf.R | 891 +--- eplusr-0.10.0/eplusr/tests/testthat/test_impl-idd.R |only eplusr-0.10.0/eplusr/tests/testthat/test_impl-idf.R |only eplusr-0.10.0/eplusr/tests/testthat/test_job.R | 69 eplusr-0.10.0/eplusr/tests/testthat/test_options.R | 19 eplusr-0.10.0/eplusr/tests/testthat/test_param.R | 187 eplusr-0.10.0/eplusr/tests/testthat/test_parse.R |only eplusr-0.10.0/eplusr/tests/testthat/test_sql.R | 63 eplusr-0.10.0/eplusr/tests/testthat/test_utils.R | 6 eplusr-0.10.0/eplusr/tests/testthat/test_validate.R |only eplusr-0.10.0/eplusr/vignettes/eplusr.Rmd | 613 +-- eplusr-0.9.4/eplusr/vignettes/eplusr.md |only 89 files changed, 17375 insertions(+), 13458 deletions(-)
Title: Full Factorials, Orthogonal Arrays and Base Utilities for DoE
Packages
Description: Creates full factorial experimental designs and designs based on orthogonal arrays for (industrial) experiments. Provides diverse quality criteria. Provides utility functions for the class design, which is also used by other packages for designed experiments.
Author: Ulrike Groemping [aut, cre],
Boyko Amarov [ctb],
Hongquan Xu [ctb]
Maintainer: Ulrike Groemping <groemping@beuth-hochschule.de>
Diff between DoE.base versions 1.1 dated 2018-08-22 and 1.1-3 dated 2019-05-03
DESCRIPTION | 8 MD5 | 42 NAMESPACE | 5 R/export.design.R | 4 R/print.oa.R | 39 inst/NEWS | 33 man/GRind.Rd | 2 man/VSGFS.Rd | 23 man/class-design.Rd | 35 man/cross.design.Rd | 18 man/expansive.replace.Rd | 2 man/export.design.Rd | 6 man/fac.design.Rd | 20 man/getblock.Rd | 17 man/oa.design.Rd | 46 man/oacat.Rd | 3 man/print.oa.Rd | 5 tests/test_aggregate.Rout.save | 507 +-- tests/test_colorder.Rout.save | 917 +++--- tests/test_cross.Rout.save | 5295 ++++++++++++++++++++-------------------- tests/test_qua.design.Rout.save | 655 ++-- tests/test_reshape.Rout.save | 435 +-- 22 files changed, 4137 insertions(+), 3980 deletions(-)
Title: Estimating Aboveground Biomass and Its Uncertainty in Tropical
Forests
Description: Contains functions to estimate aboveground biomass/carbon and its uncertainty in tropical forests.
These functions allow to (1) retrieve and to correct taxonomy, (2) estimate wood density and its uncertainty,
(3) construct height-diameter models, (4) manage tree and plot coordinates,
(5) estimate the aboveground biomass/carbon at the stand level with associated uncertainty.
To cite BIOMASS, please use citation("BIOMASS").
See more in the article of Réjou-Méchain et al. (2017) <doi:10.1111/2041-210X.12753>.
Author: Maxime Réjou-Méchain [aut, cre, dtc],
Ariane Tanguy [aut],
Camille Piponiot [aut],
Jerome Chave [dtc],
Bruno Herault [aut],
Arthur Pere [aut],
Guillaume Cornu [aut] (<https://orcid.org/0000-0002-7523-5176>),
Ted Feldpausch [dtc],
Philippe Verley [ctb]
Maintainer: Maxime Réjou-Méchain <maxime.rejou@gmail.com>
Diff between BIOMASS versions 2.1 dated 2019-03-26 and 2.1.1 dated 2019-05-03
DESCRIPTION | 14 +- MD5 | 28 ++-- R/cacheManager.R | 17 ++ R/correctTaxo.R | 89 ++++++++------- inst/doc/BIOMASS.html | 2 inst/doc/plot.html | 4 man/BIOMASS-package.Rd | 1 man/cacheManager.Rd | 8 - man/computeE.Rd | 8 - man/correctTaxo.Rd | 8 - man/getBioclimParam.Rd | 8 - tests/testthat/test_00_correctTaxo.R | 186 ++++++++++++++++---------------- tests/testthat/test_02_getWoodDensity.R | 46 +++---- tests/testthat/test_03_AGBmonteCarlo.R | 4 tests/testthat/test_03_computeAGB.R | 3 15 files changed, 224 insertions(+), 202 deletions(-)
Title: RF Variable Importance for Arbitrary Measures
Description: Computes the random forest variable importance (VIMP) for the conditional inference random forest (cforest) of the 'party' package. Includes a function (varImp) that computes the VIMP for arbitrary measures from the 'measures' package. For calculating the VIMP regarding the measures accuracy and AUC two extra functions exist (varImpACC and varImpAUC).
Author: Philipp Probst [aut, cre],
Silke Janitza [ctb]
Maintainer: Philipp Probst <philipp_probst@gmx.de>
Diff between varImp versions 0.2 dated 2018-08-06 and 0.3 dated 2019-05-03
DESCRIPTION | 11 + MD5 | 26 ++-- NAMESPACE | 30 ++--- R/helpers.R | 242 ++++++++++++++++++++-------------------- R/varImp.R | 260 +++++++++++++++++++++---------------------- R/varImpACC.R | 76 ++++++------ R/varImpAUC.R | 270 +++++++++++++++++++++++---------------------- R/varImpRanger.R |only README.md | 22 +-- man/varImp.Rd | 108 +++++++++--------- man/varImpACC.Rd | 96 ++++++++-------- man/varImpAUC.Rd | 112 +++++++++--------- man/varImpRanger.Rd |only tests/testthat.R | 6 - tests/testthat/test_base.R | 90 +++++++-------- 15 files changed, 686 insertions(+), 663 deletions(-)
Title: An Arsenal of 'R' Functions for Large-Scale Statistical
Summaries
Description: An Arsenal of 'R' functions for large-scale statistical summaries,
which are streamlined to work within the latest reporting tools in 'R' and
'RStudio' and which use formulas and versatile summary statistics for summary
tables and models. The primary functions include tableby(), a Table-1-like
summary of multiple variable types 'by' the levels of one or more categorical
variables; paired(), a Table-1-like summary of multiple variable types paired across
two time points; modelsum(), which performs simple model fits on one or more endpoints
for many variables (univariate or adjusted for covariates);
freqlist(), a powerful frequency table across many categorical variables;
comparedf(), a function for comparing data.frames; and
write2(), a function to output tables to a document.
Author: Ethan Heinzen [aut, cre],
Jason Sinnwell [aut],
Elizabeth Atkinson [aut],
Tina Gunderson [aut],
Gregory Dougherty [aut],
Patrick Votruba [ctb],
Ryan Lennon [ctb],
Andrew Hanson [ctb],
Krista Goergen [ctb],
Emily Lundt [ctb],
Brendan Broderick [ctb],
Maddie McCullough [art]
Maintainer: Ethan Heinzen <heinzen.ethan@mayo.edu>
Diff between arsenal versions 3.0.0 dated 2019-03-25 and 3.1.0 dated 2019-05-03
arsenal-3.0.0/arsenal/man/summary.compare.Rd |only arsenal-3.1.0/arsenal/DESCRIPTION | 8 arsenal-3.1.0/arsenal/MD5 | 78 arsenal-3.1.0/arsenal/NAMESPACE | 2 arsenal-3.1.0/arsenal/NEWS.md | 33 arsenal-3.1.0/arsenal/R/as.data.frame.tableby.R | 19 arsenal-3.1.0/arsenal/R/comparedf.R | 6 arsenal-3.1.0/arsenal/R/comparedf.control.R | 31 arsenal-3.1.0/arsenal/R/comparedf.internal.R | 19 arsenal-3.1.0/arsenal/R/comparedf.tolerances.R | 2 arsenal-3.1.0/arsenal/R/paired.control.R | 40 arsenal-3.1.0/arsenal/R/summary.comparedf.R | 96 arsenal-3.1.0/arsenal/R/tableby.R | 2 arsenal-3.1.0/arsenal/R/tableby.control.R | 48 arsenal-3.1.0/arsenal/R/tableby.internal.R | 22 arsenal-3.1.0/arsenal/R/tableby.stats.R | 32 arsenal-3.1.0/arsenal/inst/doc/comparedf.html | 1274 ++++++++-- arsenal-3.1.0/arsenal/inst/doc/freqlist.html | 494 ++- arsenal-3.1.0/arsenal/inst/doc/labels.html | 390 ++- arsenal-3.1.0/arsenal/inst/doc/modelsum.html | 1896 ++++++++------- arsenal-3.1.0/arsenal/inst/doc/paired.html | 369 ++ arsenal-3.1.0/arsenal/inst/doc/tableby.R | 15 arsenal-3.1.0/arsenal/inst/doc/tableby.Rmd | 20 arsenal-3.1.0/arsenal/inst/doc/tableby.html | 862 ++++-- arsenal-3.1.0/arsenal/inst/doc/write2.html | 600 +++- arsenal-3.1.0/arsenal/man/comparedf.control.Rd | 16 arsenal-3.1.0/arsenal/man/diffs.Rd | 3 arsenal-3.1.0/arsenal/man/paired.control.Rd | 60 arsenal-3.1.0/arsenal/man/summary.comparedf.Rd |only arsenal-3.1.0/arsenal/man/tableby.control.Rd | 37 arsenal-3.1.0/arsenal/man/tableby.stats.Rd | 7 arsenal-3.1.0/arsenal/man/tableby.stats.internal.Rd | 6 arsenal-3.1.0/arsenal/tests/testthat/test_comparedf.R | 169 - arsenal-3.1.0/arsenal/tests/testthat/test_lhs_tableby.R | 6 arsenal-3.1.0/arsenal/tests/testthat/test_modelsum.R | 73 arsenal-3.1.0/arsenal/tests/testthat/test_paired.R | 28 arsenal-3.1.0/arsenal/tests/testthat/test_tableby.R | 162 - arsenal-3.1.0/arsenal/tests/testthat/test_write2.R | 1 arsenal-3.1.0/arsenal/tests/testthat/write2.lm.pdf.Rmd | 2 arsenal-3.1.0/arsenal/tests/testthat/write2.yaml.pdf.Rmd | 2 arsenal-3.1.0/arsenal/vignettes/tableby.Rmd | 20 41 files changed, 4799 insertions(+), 2151 deletions(-)
More information about paws.application.integration at CRAN
Permanent link
Title: Fractional Factorial Designs with 2-Level Factors
Description: Regular and non-regular Fractional Factorial 2-level designs
can be created. Furthermore, analysis tools for Fractional
Factorial designs with 2-level factors are offered (main
effects and interaction plots for all factors simultaneously,
cube plot for looking at the simultaneous effects of three
factors, full or half normal plot, alias structure in a more
readable format than with the built-in function alias).
Author: Ulrike Groemping
Maintainer: Ulrike Groemping <groemping@beuth-hochschule.de>
Diff between FrF2 versions 1.7-2 dated 2016-09-30 and 1.7-3 dated 2019-05-03
DESCRIPTION | 8 MD5 | 24 inst/NEWS | 12 man/FrF2.Rd | 19 man/FrF2Large.Rd | 20 man/pb.Rd | 18 tests/FrF2test.R | 1 tests/FrF2test.Rout.save | 542 ++--- tests/addcentertest.Rout.save | 2952 ++++++++++++++--------------- tests/foldtest.Rout.save | 213 +- tests/generators.from.designtest.Rout.save | 52 tests/generators.summary.test.Rout.save | 48 tests/pbtest.Rout.save | 91 13 files changed, 2053 insertions(+), 1947 deletions(-)
Title: A Faster 'ARFF' File Reader and Writer
Description: Reads and writes 'ARFF' files. 'ARFF' (Attribute-Relation File Format) files are like 'CSV' files, with a little bit of added meta information in a header and standardized NA values. They are quite often used for machine learning data sets and were introduced for the 'WEKA' machine learning 'Java' toolbox. See <http://weka.wikispaces.com/ARFF> for further info on 'ARFF' and for <http://www.cs.waikato.ac.nz/ml/weka/> for more info on 'WEKA'. 'farff' gets rid of the 'Java' dependency that 'RWeka' enforces, and it is at least a faster reader (for bigger files). It uses 'readr' as parser back-end for the data section of the 'ARFF' file. Consistency with 'RWeka' is tested on 'Github' and 'Travis CI' with hundreds of 'ARFF' files from 'OpenML'. Note that the 'OpenML' package is currently only available from 'Github' at: <https://github.com/openml/openml-r>.
Author: Bernd Bischl [aut, cre],
Jakob Bossek [aut]
Maintainer: Bernd Bischl <bernd_bischl@gmx.net>
Diff between farff versions 1.0 dated 2016-09-10 and 1.1 dated 2019-05-03
DESCRIPTION | 8 ++++---- MD5 | 28 +++++++++++++++------------- NAMESPACE | 2 +- NEWS.md | 8 ++++---- R/helpers.R | 13 +++++++++++++ R/parseHeader.R | 2 +- R/readARFF.R | 10 +++++++--- R/writeARFF.R | 3 +-- R/zzz.R | 2 +- inst/arffs/check_logicals.arff |only man/readARFF.Rd | 1 - man/writeARFF.Rd | 4 +--- src/init.c |only src/preproc_datatable.c | 2 +- src/preproc_readr.c | 6 +++--- tests/testthat/test_quick.R | 4 ++-- 16 files changed, 54 insertions(+), 39 deletions(-)
Title: 'CARTOColors' Palettes
Description: Provides color schemes for maps and other graphics
designed by 'CARTO' as described at <https://carto.com/carto-colors/>.
It includes four types of palettes: aggregation, diverging, qualitative,
and quantitative.
Author: Jakub Nowosad [aut, cre] (<https://orcid.org/0000-0002-1057-3721>)
Maintainer: Jakub Nowosad <nowosad.jakub@gmail.com>
Diff between rcartocolor versions 1.0.0 dated 2019-03-08 and 2.0.0 dated 2019-05-03
DESCRIPTION | 12 +++++------ MD5 | 38 ++++++++++++++++++------------------ R/carto_pal.R | 1 R/carto_scale.R | 1 R/display_carto_all.R | 19 ++++++++++++------ R/display_carto_pal.R | 2 - R/metacartocolors.R | 1 README.md | 14 ++++++++++--- data/metacartocolors.rda |binary inst |only man/carto_pal.Rd | 1 man/carto_scale.Rd | 1 man/display_carto_all.Rd | 16 ++++++++------- man/display_carto_pal.Rd | 3 -- man/figures/README-example-1.png |binary man/figures/README-example3-1.png |binary man/figures/README-example4-1.png |only man/figures/README-examplegg1-1.png |binary man/figures/README-examplegg2-1.png |binary man/metacartocolors.Rd | 1 tests/testthat/test-palettes.R | 2 - 21 files changed, 64 insertions(+), 48 deletions(-)
Title: Item Analysis in Rasch Models
Description: Tools to assess model fit and identify misfitting items for Rasch models (RM) and partial credit models (PCM). Included are item fit statistics, item-restscore association, conditional likelihood ratio tests, assessment of measurement error, estimates of the reliability and test targeting as described in Christensen et al. (Eds.) (2013, ISBN:978-1-84821-222-0).
Author: Marianne Mueller [aut, cre]
Maintainer: Marianne Mueller <mllm@zhaw.ch>
Diff between iarm versions 0.1.2 dated 2019-03-06 and 0.2.0 dated 2019-05-03
DESCRIPTION | 6 +- MD5 | 17 ++++--- NAMESPACE | 4 + NEWS |only R/Gamma.R | 88 ++++++++++++++++++++++++++++++++++++++--- R/Person-Fit.R | 103 +++++++++++++++++++++++++++++------------------- man/partgam.Rd | 11 +---- man/partgam_DIF.Rd |only man/partgam_LD.Rd |only man/person_estimates.Rd | 4 + man/test_prop.Rd | 7 +-- 11 files changed, 174 insertions(+), 66 deletions(-)
More information about Monte.Carlo.se at CRAN
Permanent link
Title: Techniques for Automated Classifiers
Description: A set of techniques that can be used to develop, validate, and implement automated classifiers. A powerful tool for transforming raw data into meaningful information, 'ncodeR' (Shaffer, D. W. (2017) Quantitative Ethnography. ISBN: 0578191687) is designed specifically for working with big data: large document collections, logfiles, and other text data.
Author: Cody L Marquart [aut, cre],
Zachari Swiecki [aut],
Brendan Eagan [aut],
David Williamson Shaffer [aut]
Maintainer: Cody L Marquart <cody.marquart@wisc.edu>
Diff between ncodeR versions 0.1.2 dated 2018-08-29 and 0.1.3.0 dated 2019-05-03
DESCRIPTION | 10 +- MD5 | 46 ++++++----- NAMESPACE | 2 R/Code.R | 41 +++++++--- R/RegexCode.R | 25 +++--- R/Test.R | 163 ++++++++++++++++++++++++++++++------------ R/autocode.R | 1 R/getHandSetIndices.R | 17 +++- R/handcode.R | 16 +++- R/resolve.R | 50 +++++++----- R/summary&print.R | 91 +++++++++++++++++++---- data/RS.data.rda |binary demo/ncodeR.code.set.R | 2 inst/NEWS.Rd | 10 ++ inst/docker |only man/as.data.frame.Code.Rd | 3 man/as.data.frame.CodeSet.Rd | 3 man/autocode.Rd | 4 - man/create.code.Rd | 4 - man/getHandSetIndices.Rd | 7 + man/handcode.Rd | 4 - man/print.summary.TestList.Rd |only man/summary.TestList.Rd |only man/test.Rd | 7 + 24 files changed, 362 insertions(+), 144 deletions(-)
Title: Elevation and GPS Data Visualisation
Description: Simpler processing of digital elevation model and GPS trace data for use with the 'rayshader' package.
Author: Neil Charles
Maintainer: Neil Charles <neil.d.charles@gmail.com>
Diff between geoviz versions 0.2.0 dated 2019-04-05 and 0.2.1 dated 2019-05-03
geoviz-0.2.0/geoviz/man/figures/example1.png |only geoviz-0.2.0/geoviz/man/figures/example2.png |only geoviz-0.2.0/geoviz/man/figures/example3.png |only geoviz-0.2.0/geoviz/man/figures/stamen_example.jpg |only geoviz-0.2.1/geoviz/DESCRIPTION | 7 - geoviz-0.2.1/geoviz/MD5 | 60 +++++++------ geoviz-0.2.1/geoviz/NAMESPACE | 1 geoviz-0.2.1/geoviz/R/add_gps_to_rayshader.R | 4 geoviz-0.2.1/geoviz/R/crop_raster_track.R | 20 ---- geoviz-0.2.1/geoviz/R/elevation_shade.R | 9 +- geoviz-0.2.1/geoviz/R/elevation_transparency.R | 5 + geoviz-0.2.1/geoviz/R/get_slippy_map.R | 38 +++++++- geoviz-0.2.1/geoviz/R/mapbox_dem.R | 15 +-- geoviz-0.2.1/geoviz/R/mapzen_dem.R |only geoviz-0.2.1/geoviz/R/read_igc.R | 5 - geoviz-0.2.1/geoviz/R/slippy_overlay.R | 21 ++-- geoviz-0.2.1/geoviz/R/slippy_raster.R | 33 +++---- geoviz-0.2.1/geoviz/R/utils.R | 76 ++++++++++++++++- geoviz-0.2.1/geoviz/README.md | 36 ++++++-- geoviz-0.2.1/geoviz/build/vignette.rds |binary geoviz-0.2.1/geoviz/inst/doc/hawaii_mapzen_dem.Rmd |only geoviz-0.2.1/geoviz/inst/doc/hawaii_mapzen_dem.html |only geoviz-0.2.1/geoviz/inst/doc/scene_with_gps_trace.html | 4 geoviz-0.2.1/geoviz/man/add_gps_to_rayshader.Rd | 2 geoviz-0.2.1/geoviz/man/crop_raster_track.Rd | 2 geoviz-0.2.1/geoviz/man/elevation_shade.Rd | 2 geoviz-0.2.1/geoviz/man/figures/example1.jpg |only geoviz-0.2.1/geoviz/man/figures/example2.jpg |only geoviz-0.2.1/geoviz/man/figures/example3.jpg |only geoviz-0.2.1/geoviz/man/figures/ullswater.jpg |only geoviz-0.2.1/geoviz/man/get_slippy_map.Rd | 8 - geoviz-0.2.1/geoviz/man/mapbox_dem.Rd | 15 ++- geoviz-0.2.1/geoviz/man/mapzen_dem.Rd |only geoviz-0.2.1/geoviz/man/slippy_overlay.Rd | 12 +- geoviz-0.2.1/geoviz/man/slippy_raster.Rd | 20 ++-- geoviz-0.2.1/geoviz/tests/testthat/test_imagery.R | 10 +- geoviz-0.2.1/geoviz/vignettes/figures |only geoviz-0.2.1/geoviz/vignettes/hawaii_mapzen_dem.Rmd |only 38 files changed, 269 insertions(+), 136 deletions(-)
Title: An R-Tool for Comprehensive Science Mapping Analysis
Description: Tool for quantitative research in scientometrics and bibliometrics.
It provides various routines for importing bibliographic data from SCOPUS (<http://scopus.com>),
Clarivate Analytics Web of Science (<http://www.webofknowledge.com/>), Cochrane Library (<http://www.cochranelibrary.com/>)
and PubMed (<https://www.ncbi.nlm.nih.gov/pubmed/>) databases, performing bibliometric analysis
and building networks for co-citation, coupling, scientific collaboration and co-word analysis.
Author: Massimo Aria [cre, aut],
Corrado Cuccurullo [aut]
Maintainer: Massimo Aria <aria@unina.it>
Diff between bibliometrix versions 2.1.2 dated 2019-03-14 and 2.2.0 dated 2019-05-03
DESCRIPTION | 14 MD5 | 57 ++- NAMESPACE | 2 NEWS | 9 R/authorProdOverTime.R | 2 R/biblioNetwork.R | 228 ++++++++------- R/cocMatrix.R | 2 R/conceptualStructure.R | 21 - R/convert2df.R | 1 R/networkPlot.R | 5 R/rpys.R | 61 ++-- R/thematicEvolution.R | 11 R/thematicMap.R | 5 R/threeFieldsPlot.R |only build/partial.rdb |binary build/vignette.rds |binary data/biblio.rda |binary data/biblio_df.rda |binary data/bibtag.rda |binary data/countries.rda |binary data/garfield.rda |binary data/isiCollection.rda |binary data/scientometrics.rda |binary data/scientometrics_text.rda |binary data/scopusCollection.rda |binary data/stopwords.rda |binary inst/biblioshiny/rsconnect |only inst/biblioshiny/server.R | 75 ++++- inst/biblioshiny/ui.R | 97 +++++- inst/doc/bibliometrix-vignette.html | 529 +++++++++++++++++++++++++----------- man/threeFieldsPlot.Rd |only 31 files changed, 743 insertions(+), 376 deletions(-)