Title: IEX Stocks and Market Data
Description: Retrieves efficiently and reliably Investors Exchange ('IEX') stock and market data using 'IEX Cloud API'. The platform is offered by Investors Exchange Group (IEX Group).
Main goal is to leverage 'R' capabilities including existing packages to effectively provide financial and statistical analysis as well as visualization in support of fact-based decisions.
In addition, continuously improve and enhance 'Riex' by applying best practices and being in tune with users' feedback and requirements.
Please, make sure to review and acknowledge Investors Exchange Group (IEX Group) terms and conditions before using 'Riex' (<https://iexcloud.io/terms/>).
Author: Myriam Ibrahim [aut, cre]
Maintainer: Myriam Ibrahim <ibrahimmyriam7@gmail.com>
Diff between Riex versions 1.0.0 dated 2019-05-03 and 1.0.1 dated 2019-05-05
DESCRIPTION | 14 +++--- MD5 | 10 ++-- NAMESPACE | 1 R/IEX_Market_Data.R | 1 README.md | 68 ++++++------------------------- inst/doc/iex_stocks_and_market_data.html | 4 - 6 files changed, 29 insertions(+), 69 deletions(-)
Title: Analysis of Parent-Specific DNA Copy Numbers
Description: Segmentation of allele-specific DNA copy number data and detection of regions with abnormal copy number within each parental chromosome. Both tumor-normal paired and tumor-only analyses are supported.
Author: Henrik Bengtsson [aut, cre, cph],
Pierre Neuvial [aut],
Venkatraman E. Seshan [aut],
Adam B. Olshen [aut],
Paul T. Spellman [aut],
Richard A. Olshen [aut]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between PSCBS versions 0.64.0 dated 2018-08-12 and 0.65.0 dated 2019-05-05
DESCRIPTION | 19 MD5 | 44 NAMESPACE | 2 NEWS | 1070 ++++++++++---------- R/PairedPSCBS.R | 2 R/installDNAcopy.R | 17 R/segmentByPairedPSCBS.R | 9 build/vignette.rds |binary inst/doc/CBS.R | 2 inst/doc/CBS.pdf |binary inst/doc/PairedPSCBS.R | 4 inst/doc/PairedPSCBS.pdf |binary inst/doc/PairedPSCBS.tex.rsp | 2 inst/templates/rsp/CBS,report.tex.rsp | 5 inst/templates/rsp/PairedPSCBS,report.tex.rsp | 24 inst/templates/rsp/includes/signalDensities.tex.rsp | 4 man/AbstractCBS.Rd | 30 man/CBS.Rd | 12 man/NonPairedPSCBS.Rd | 2 man/PSCBS.Rd | 4 man/PairedPSCBS.Rd | 20 man/segmentByPairedPSCBS.Rd | 3 vignettes/PairedPSCBS.tex.rsp | 2 23 files changed, 669 insertions(+), 608 deletions(-)
Title: Learning High-Dimensional Graphical Models
Description: Provides an equivalent measure of partial correlation coefficients for high-dimensional Gaussian Graphical Models to learn and visualize the underlying relationships between variables from single or multiple datasets. You can refer to Liang, F., Song, Q. and Qiu, P. (2015) <doi:10.1080/01621459.2015.1012391> for more detail. Based on this method, the package also provides the method for constructing networks for Next Generation Sequencing Data, jointly estimating multiple Gaussian Graphical Models, constructing single graphical model for heterogeneous dataset, inferring graphical models from high-dimensional missing data and estimating moral graph for Bayesian network.
Author: Bochao Jia, Faming Liang, Runmin Shi, Suwa Xu
Maintainer: Bochao Jia <jbc409@gmail.com>
Diff between equSA versions 1.1.5 dated 2018-01-20 and 1.2.1 dated 2019-05-05
equSA-1.1.5/equSA/R/p_learning.R |only equSA-1.1.5/equSA/R/simtoequiv.R |only equSA-1.1.5/equSA/data/SR0_mat.rda |only equSA-1.1.5/equSA/data/TR0_mat.rda |only equSA-1.1.5/equSA/data/datalist |only equSA-1.1.5/equSA/data/mixed3000.rda |only equSA-1.1.5/equSA/man/SR0_mat.Rd |only equSA-1.1.5/equSA/man/TR0_mat.Rd |only equSA-1.1.5/equSA/man/mixed3000.Rd |only equSA-1.1.5/equSA/man/p_learning.Rd |only equSA-1.1.5/equSA/man/simtoequiv.Rd |only equSA-1.2.1/equSA/DESCRIPTION | 20 - equSA-1.2.1/equSA/MD5 | 87 +++--- equSA-1.2.1/equSA/NAMESPACE | 6 equSA-1.2.1/equSA/R/DAGsim.R | 184 ++++++++++--- equSA-1.2.1/equSA/R/GGMM.R |only equSA-1.2.1/equSA/R/GauSim.R |only equSA-1.2.1/equSA/R/GraphIRO.R |only equSA-1.2.1/equSA/R/JGGM.R | 66 +++- equSA-1.2.1/equSA/R/JMGM.R |only equSA-1.2.1/equSA/R/MNR.R |only equSA-1.2.1/equSA/R/SimGraDat.R |only equSA-1.2.1/equSA/R/SimHetDat.R |only equSA-1.2.1/equSA/R/SimMNR.R |only equSA-1.2.1/equSA/R/combine.R | 3 equSA-1.2.1/equSA/R/diff.R | 1 equSA-1.2.1/equSA/R/equSA.R | 82 ++++- equSA-1.2.1/equSA/R/plearn.moral.R |only equSA-1.2.1/equSA/R/plearn.struct.R |only equSA-1.2.1/equSA/R/simGraph.R | 2 equSA-1.2.1/equSA/R/sysdata.rda |only equSA-1.2.1/equSA/data/alarm.rda |only equSA-1.2.1/equSA/man/Cont2Gaus.Rd | 13 equSA-1.2.1/equSA/man/ContSim.Rd | 32 +- equSA-1.2.1/equSA/man/ContTran.Rd | 10 equSA-1.2.1/equSA/man/DAGsim.Rd | 87 ++---- equSA-1.2.1/equSA/man/GGMM.Rd |only equSA-1.2.1/equSA/man/GauSim.Rd |only equSA-1.2.1/equSA/man/GraphIRO.Rd |only equSA-1.2.1/equSA/man/JGGM.Rd | 58 ++-- equSA-1.2.1/equSA/man/JMGM.Rd |only equSA-1.2.1/equSA/man/MNR.Rd |only equSA-1.2.1/equSA/man/Mulpval.Rd |only equSA-1.2.1/equSA/man/SR0.Rd | 6 equSA-1.2.1/equSA/man/SimGraDat.Rd |only equSA-1.2.1/equSA/man/SimHetDat.Rd |only equSA-1.2.1/equSA/man/SimMNR.Rd |only equSA-1.2.1/equSA/man/TR0.Rd | 6 equSA-1.2.1/equSA/man/alarm.Rd |only equSA-1.2.1/equSA/man/combineR.Rd | 30 +- equSA-1.2.1/equSA/man/count.Rd | 6 equSA-1.2.1/equSA/man/diffR.Rd | 28 +- equSA-1.2.1/equSA/man/equSA-package.Rd | 52 ++- equSA-1.2.1/equSA/man/equSAR.Rd | 29 -- equSA-1.2.1/equSA/man/pcorselR.Rd | 3 equSA-1.2.1/equSA/man/plearn.moral.Rd |only equSA-1.2.1/equSA/man/plearn.struct.Rd |only equSA-1.2.1/equSA/man/plotGraph.Rd | 6 equSA-1.2.1/equSA/man/plotJGraph.Rd | 37 +- equSA-1.2.1/equSA/man/psical.Rd | 22 - equSA-1.2.1/equSA/man/solcov.Rd | 28 -- equSA-1.2.1/equSA/src/equSA.c | 459 +++++++++++++++++---------------- 62 files changed, 801 insertions(+), 562 deletions(-)
Title: Easily Access Song Lyrics from Genius.com
Description: Easily access song lyrics in a tidy way.
Author: Josiah Parry [aut, cre],
Nathan Barr [ctb]
Maintainer: Josiah Parry <josiah.parry@gmail.com>
Diff between genius versions 0.0.1.0 dated 2019-03-06 and 2.2.0 dated 2019-05-05
genius-0.0.1.0/genius/build |only genius-0.0.1.0/genius/inst/doc |only genius-0.0.1.0/genius/vignettes |only genius-2.2.0/genius/DESCRIPTION | 14 ++++++------- genius-2.2.0/genius/MD5 | 24 +++++++++++----------- genius-2.2.0/genius/NAMESPACE | 5 ++++ genius-2.2.0/genius/NEWS.md | 26 +++++++++++++++++++++++- genius-2.2.0/genius/R/add_genius.R | 33 +++++++++++++++++-------------- genius-2.2.0/genius/R/calc_self_sim.R |only genius-2.2.0/genius/R/genius_album.R | 2 - genius-2.2.0/genius/R/utils.R | 11 +++++++++- genius-2.2.0/genius/inst/tutorials |only genius-2.2.0/genius/man/add_genius.Rd | 6 ++--- genius-2.2.0/genius/man/calc_self_sim.Rd |only genius-2.2.0/genius/man/possible_url.Rd |only 15 files changed, 82 insertions(+), 39 deletions(-)
Title: Compile and Preview Snippets of 'LaTeX' in 'RStudio'
Description: Compile and preview snippets of 'LaTeX'. Can be used directly from the R console, from 'RStudio',
in Shiny apps and R Markdown documents. Must have 'pdflatex' or 'xelatex' or 'lualatex' in 'PATH'.
Author: Jonathan Sidi [aut, cre],
Daniel Polhamus [aut]
Maintainer: Jonathan Sidi <yonis@metrumrg.com>
Diff between texPreview versions 1.2.3 dated 2018-10-25 and 1.3.2 dated 2019-05-05
texPreview-1.2.3/texPreview/R/texPreview.R |only texPreview-1.2.3/texPreview/man/texPreview.Rd |only texPreview-1.3.2/texPreview/DESCRIPTION | 13 - texPreview-1.3.2/texPreview/MD5 | 64 ++++--- texPreview-1.3.2/texPreview/NAMESPACE | 3 texPreview-1.3.2/texPreview/NEWS.md | 12 + texPreview-1.3.2/texPreview/R/build_lines.R | 2 texPreview-1.3.2/texPreview/R/build_usepackage.R | 5 texPreview-1.3.2/texPreview/R/get_texpackages.R | 8 texPreview-1.3.2/texPreview/R/opts.R | 1 texPreview-1.3.2/texPreview/R/sysdata.rda |binary texPreview-1.3.2/texPreview/R/texPreview-deprecated.R |only texPreview-1.3.2/texPreview/R/tex_addin.R | 4 texPreview-1.3.2/texPreview/R/tex_preview.R |only texPreview-1.3.2/texPreview/R/tex_return.R | 2 texPreview-1.3.2/texPreview/R/zzz.R | 11 + texPreview-1.3.2/texPreview/README.md | 9 - texPreview-1.3.2/texPreview/build/vignette.rds |binary texPreview-1.3.2/texPreview/inst/doc/rmarkdown.R |only texPreview-1.3.2/texPreview/inst/doc/rmarkdown.Rmd |only texPreview-1.3.2/texPreview/inst/doc/rmarkdown.html |only texPreview-1.3.2/texPreview/inst/doc/slickr.R |only texPreview-1.3.2/texPreview/inst/doc/slickr.Rmd |only texPreview-1.3.2/texPreview/inst/doc/slickr.html |only texPreview-1.3.2/texPreview/inst/doc/tests_and_coverage.Rmd | 79 +++++---- texPreview-1.3.2/texPreview/inst/doc/tests_and_coverage.html | 80 +++++---- texPreview-1.3.2/texPreview/inst/doc/tex_packages.R |only texPreview-1.3.2/texPreview/inst/doc/tex_packages.Rmd |only texPreview-1.3.2/texPreview/inst/doc/tex_packages.html |only texPreview-1.3.2/texPreview/man/build_usepackage.Rd | 2 texPreview-1.3.2/texPreview/man/get_texpackages.Rd | 2 texPreview-1.3.2/texPreview/man/tex_opts.Rd | 1 texPreview-1.3.2/texPreview/man/tex_preview.Rd |only texPreview-1.3.2/texPreview/tests/README.md | 81 +++++----- texPreview-1.3.2/texPreview/tests/testthat.R | 1 texPreview-1.3.2/texPreview/tests/testthat/helper-functions.R |only texPreview-1.3.2/texPreview/tests/testthat/test-tex.R | 14 - texPreview-1.3.2/texPreview/tests/testthat/test-utilities.R | 4 texPreview-1.3.2/texPreview/vignettes/rmarkdown.Rmd |only texPreview-1.3.2/texPreview/vignettes/slickr.Rmd |only texPreview-1.3.2/texPreview/vignettes/tests_and_coverage.Rmd | 79 +++++---- texPreview-1.3.2/texPreview/vignettes/tex_packages.Rmd |only 42 files changed, 277 insertions(+), 200 deletions(-)
Title: Recognize and Handle Data in Formats Used by Swedish Cancer
Centers
Description: Handle data in formats used by cancer centers in Sweden, both from 'INCA'
(<https://rcc.incanet.se>) and by the older register platform 'Rockan'.
All variables are coerced to suitable classes based on their format.
Dates (from various formats such as with missing month or day, with or
without century prefix or with just a week number) are all recognized as
dates and coerced to the ISO 8601 standard (Y-m-d).
Boolean variables (internally stored either as 0/1 or "True"/"False"/blanks
when exported) are coerced to logical.
Variable names ending in '_Beskrivning' and '_Varde' will be character,
and 'PERSNR' will be coerced (if possible) to a valid personal identification
number 'pin' (by the 'sweidnumbr' package).
The package also allow the user to interactively choose if a variable should
be coerced into a potential format even though not all of its values might
conform to the recognized pattern.
It also contain a caching mechanism in order to temporarily store data sets
with its newly decided formats in order to not rerun the identification
process each time.
The package also include a mechanism to aid the documentation process
connected to projects build on data from 'INCA'.
From version 0.7, some general help functions are also included,
as previously found in the 'rccmisc' package.
Author: Erik Bulow [aut, cre] (<https://orcid.org/0000-0002-9973-456X>)
Maintainer: Erik Bulow <erik.bulow@rccvast.se>
Diff between incadata versions 0.6.4 dated 2018-07-13 and 0.8.2 dated 2019-05-05
DESCRIPTION | 25 ++-- MD5 | 108 ++++++++++++++----- NAMESPACE | 26 ++++ NEWS.md | 19 ++- R/as.Dates.R | 2 R/as.incadata.data.frame.R | 5 R/as.incadata.default.R | 4 R/as_numeric.R |only R/best_match.R |only R/bmatch.R | 12 +- R/clean_text.R |only R/create_s3_methods.R |only R/cut.integer.R |only R/documents.R | 28 +++-- R/dplyr_methods.R | 4 R/exceed_threshold.R |only R/exportr.R |only R/find_documents.R | 36 +----- R/find_links.R |only R/find_register.R | 27 +++- R/id.R | 8 + R/is.inca.R |only R/is.incalogical.R | 9 + R/is.wholenumber.R |only R/is_scalar_in.R |only R/lownames.R |only R/psum.R |only R/specify_missing.R |only R/use_incadata.R | 2 R/width.R |only README.md | 110 +++++++++----------- build/vignette.rds |binary data/ex_data.rda |binary inst/doc/incadoc.html | 175 ++++++++++++-------------------- man/as.incadata.Rd | 4 man/as_numeric.Rd |only man/best_match.Rd |only man/clean_text.Rd |only man/create_s3_method.Rd |only man/cut.integer.Rd |only man/documents.Rd | 10 - man/exceed_threshold.Rd |only man/exportr.Rd |only man/figures |only man/find_documents.Rd | 17 +-- man/find_links.Rd |only man/find_register.Rd | 11 +- man/id.Rd | 3 man/is.inca.Rd |only man/is.incalogical.Rd | 7 - man/is.scalar_in.Rd |only man/is.wholenumber.Rd |only man/lownames.Rd |only man/psum.Rd |only man/reexports.Rd | 1 man/specify_missing.Rd |only man/width.Rd |only tests/testthat/test-as.Dates.R | 3 tests/testthat/test-best_match.R |only tests/testthat/test-bmatch.R |only tests/testthat/test-clean_text.R |only tests/testthat/test-create_s3_methods.R |only tests/testthat/test-cut.integer.R |only tests/testthat/test-destring.R |only tests/testthat/test-exceed_threshold.R |only tests/testthat/test-exportr.R |only tests/testthat/test-find_register.R | 19 +-- tests/testthat/test-id.R |only tests/testthat/test-is.inca.R |only tests/testthat/test-is_scalar_in.R |only tests/testthat/test-lownames.R |only tests/testthat/test-psum.R |only tests/testthat/test-specify_missing.R |only tests/testthat/test-width.R |only vignettes/incadata.Rmd | 53 ++++----- vignettes/incadoc.Rmd | 134 ++++++++---------------- vignettes/incadoc.Rmd.orig | 41 ++++--- vignettes/rccdates.Rmd | 33 +++--- 78 files changed, 482 insertions(+), 454 deletions(-)
Title: Analysis and Search of Crossover Designs
Description: Package Crossover provides different crossover designs from
combinatorial or search algorithms as well as from literature and a GUI to
access them.
Author: Kornelius Rohmeyer
Maintainer: Kornelius Rohmeyer <rohmeyer@small-projects.de>
Diff between Crossover versions 0.1-17 dated 2017-11-10 and 0.1-18 dated 2019-05-05
DESCRIPTION | 8 +++---- MD5 | 38 ++++++++++++++++++------------------- NEWS | 8 +++++++ build/vignette.rds |binary inst/doc/Crossover.pdf |binary man/CrossoverDesign-class.Rd | 6 ++--- man/CrossoverGUI.Rd | 1 man/CrossoverSearchResult-class.Rd | 6 ++--- man/buildSummaryTable.Rd | 7 ++---- man/canonicalOrder.Rd | 1 man/contrMat2.Rd | 5 +--- man/design.efficiency.Rd | 7 ++---- man/general.carryover.Rd | 7 ++---- man/getDesign-methods.Rd | 3 -- man/getModelNr.Rd | 1 man/plot-methods.Rd | 1 man/rcd.Rd | 1 man/rcdMatrix.Rd | 1 man/searchCrossOverDesign.Rd | 13 +++++------- src/searchCOD.cpp | 1 20 files changed, 55 insertions(+), 60 deletions(-)
Title: Structured Interface to Julia
Description: A Julia interface structured according to the general
form described in package 'XR' and in the book "Extending R".
Author: John M. Chambers
Maintainer: John Chambers <jmc@r-project.org>
Diff between XRJulia versions 0.7.7 dated 2018-03-18 and 0.9.0 dated 2019-05-05
XRJulia-0.7.7/XRJulia/inst/julia/addJSON.jl |only XRJulia-0.7.7/XRJulia/inst/tests/basicEval.R |only XRJulia-0.7.7/XRJulia/inst/tests/juliaTest.jl |only XRJulia-0.7.7/XRJulia/inst/tests/juliaTestLines.jl |only XRJulia-0.7.7/XRJulia/inst/tests/testClient.R |only XRJulia-0.7.7/XRJulia/inst/tests/testNoJSON.R |only XRJulia-0.7.7/XRJulia/inst/tests/testRJulia.R |only XRJulia-0.9.0/XRJulia/DESCRIPTION | 13 XRJulia-0.9.0/XRJulia/MD5 | 43 + XRJulia-0.9.0/XRJulia/NAMESPACE | 4 XRJulia-0.9.0/XRJulia/R/RJuliaConnect.R | 431 +++++++++++++++----- XRJulia-0.9.0/XRJulia/build |only XRJulia-0.9.0/XRJulia/inst/doc/dataTransfer.R |only XRJulia-0.9.0/XRJulia/inst/doc/dataTransfer.Rmd |only XRJulia-0.9.0/XRJulia/inst/doc/dataTransfer.html |only XRJulia-0.9.0/XRJulia/inst/julia/RJuliaJSON.jl | 84 ++- XRJulia-0.9.0/XRJulia/inst/julia/XRJulia.jl | 230 +++++++--- XRJulia-0.9.0/XRJulia/inst/julia/testJSON.jl | 23 - XRJulia-0.9.0/XRJulia/inst/tests/Pkg_add.R |only XRJulia-0.9.0/XRJulia/inst/tests/mustbe.R |only XRJulia-0.9.0/XRJulia/inst/tests/require_v0.7.R |only XRJulia-0.9.0/XRJulia/inst/tests/send_get_Vectors.R |only XRJulia-0.9.0/XRJulia/inst/tests/testClass.jl |only XRJulia-0.9.0/XRJulia/inst/tests/timeDataTransfer.R |only XRJulia-0.9.0/XRJulia/man/JuliaFunction-class.Rd | 19 XRJulia-0.9.0/XRJulia/man/JuliaInterface-class.Rd | 32 + XRJulia-0.9.0/XRJulia/man/XRjulia-package.Rd | 3 XRJulia-0.9.0/XRJulia/man/functions.Rd | 4 XRJulia-0.9.0/XRJulia/man/juliaOptions.Rd |only XRJulia-0.9.0/XRJulia/man/juliaVersion.Rd |only XRJulia-0.9.0/XRJulia/man/largeVectors.Rd |only XRJulia-0.9.0/XRJulia/man/setJuliaClass.Rd | 3 XRJulia-0.9.0/XRJulia/vignettes |only 33 files changed, 638 insertions(+), 251 deletions(-)
Title: Generates a 3D Visualization of Volatility Skew and Stock Option
Parameters Plotted Over Time
Description: Generates a 3D graph which plots the volatility skew of a stock or a selected stock option parameter over time.
The default setting plots the net parameter position of a double vertical spread over time.
Author: John T. Buynak
Maintainer: John T. Buynak <jbuynak94@gmail.com>
Diff between visualR versions 2.0.0 dated 2019-04-12 and 2.0.1 dated 2019-05-05
DESCRIPTION | 9 - MD5 | 14 +- NAMESPACE | 5 R/volskew.R | 265 ++++++++++++++++++++++++++++++++------------------ inst/doc/visualr.Rmd | 5 inst/doc/visualr.html | 6 - man/volskew.Rd | 12 +- vignettes/visualr.Rmd | 5 8 files changed, 203 insertions(+), 118 deletions(-)
Title: A Parser for 'ArchieML'
Description: Parses the 'ArchieML' format from the New York Times <http://archieml.org>.
Also provides utilities for retrieving Google Drive documents for parsing.
Author: Noam Ross [aut, cre] (<https://orcid.org/0000-0002-2136-0000>),
Michael Strickland [aut] (Author of archieml-js library)
Maintainer: Noam Ross <noam.ross@gmail.com>
Diff between rchie versions 1.0.0 dated 2018-11-28 and 1.0.1 dated 2019-05-05
DESCRIPTION | 8 ++++---- MD5 | 9 +++++---- NEWS.md | 11 ++++++++--- README.md | 2 +- inst/WORDLIST |only tests/testthat/test-gdoc.R | 10 ++++------ 6 files changed, 22 insertions(+), 18 deletions(-)
Title: Reliably Return the Source and Call Location of a Command
Description: Robust and reliable functions to return informative outputs to
console with the run or source location of a command. This can be from
the 'RScript'/R terminal commands or 'RStudio' console, source editor,
'Rmarkdown' document and a Shiny application.
Author: Jonathan Sidi [aut, cre] (<https://orcid.org/0000-0002-4222-1819>),
Colin Fay [ctb] (<https://orcid.org/0000-0001-7343-1846>),
Kirill Müller [aut] (<https://orcid.org/0000-0002-1416-3412>)
Maintainer: Jonathan Sidi <yonicd@gmail.com>
Diff between whereami versions 0.1.8 dated 2019-04-26 and 0.1.8.1 dated 2019-05-05
DESCRIPTION | 8 +++--- MD5 | 31 ++++++++++++------------ NEWS.md |only R/whereami.R | 2 - README.md | 12 +++++---- inst/doc/plots.html | 6 ++-- inst/doc/tables.R | 2 - inst/doc/tables.Rmd | 2 - inst/doc/tables.html | 4 +-- inst/doc/tests_and_coverage.Rmd | 38 ++++++++++++++--------------- inst/doc/tests_and_coverage.html | 46 ++++++++++++++++++------------------ tests/README.md | 40 +++++++++++++++---------------- tests/testthat/scripts/thisfile.Rmd | 2 - tests/testthat/test-console.R | 4 ++- tests/testthat/test-thisfile.R | 2 - vignettes/tables.Rmd | 2 - vignettes/tests_and_coverage.Rmd | 38 ++++++++++++++--------------- 17 files changed, 122 insertions(+), 117 deletions(-)
Title: A Statistically Sound 'data.frame' Processor/Conditioner
Description: A 'data.frame' processor/conditioner that prepares real-world data for predictive modeling in a statistically sound manner.
'vtreat' prepares variables so that data has fewer exceptional cases, making
it easier to safely use models in production. Common problems 'vtreat' defends
against: 'Inf', 'NA', too many categorical levels, rare categorical levels, and new
categorical levels (levels seen during application, but not during training). Reference:
"'vtreat': a data.frame Processor for Predictive Modeling", 'Zumel', 'Mount', 2016, DOI:10.5281/zenodo.1173314.
Author: John Mount [aut, cre],
Nina Zumel [aut],
Win-Vector LLC [cph]
Maintainer: John Mount <jmount@win-vector.com>
Diff between vtreat versions 1.3.8 dated 2019-03-31 and 1.4.0 dated 2019-05-05
DESCRIPTION | 12 MD5 | 41 +- NEWS.md | 5 R/utils.R | 57 ++ README.md | 371 +++++++++++++----- build/vignette.rds |binary inst/doc/MultiClassVtreat.html | 573 ++++++++++++++++++++--------- inst/doc/SavingTreamentPlans.html | 403 +++++++++++++++----- inst/doc/VariableImportance.html | 349 ++++++++++++++--- inst/doc/vtreat.Rmd | 6 inst/doc/vtreat.html | 431 ++++++++++++++++------ inst/doc/vtreatCrossFrames.html | 723 +++++++++++++++++++++++-------------- inst/doc/vtreatGrouping.html | 377 +++++++++++++++---- inst/doc/vtreatOverfit.html | 571 +++++++++++++++++++---------- inst/doc/vtreatRareLevels.html | 461 +++++++++++++++++------ inst/doc/vtreatScaleMode.html | 459 +++++++++++++++++------ inst/doc/vtreatSignificance.html | 397 +++++++++++++++----- inst/doc/vtreatSplitting.html | 427 ++++++++++++++++----- inst/doc/vtreatVariableTypes.html | 489 +++++++++++++++++-------- inst/doc/vtreat_article.pdf |binary inst/unit_tests/test_level_clash.R |only vignettes/vtreat.Rmd | 6 22 files changed, 4453 insertions(+), 1705 deletions(-)
Title: Subnetwork Integration for Multi-Modal Signatures
Description: Algorithms to create prognostic biomarkers using biological genesets or networks.
Author: Syed Haider [aut, cre],
Paul C. Boutros [aut],
Michal Grzadkowski [ctb]
Maintainer: Syed Haider <Syed.Haider@icr.ac.uk>
Diff between SIMMS versions 1.1.2 dated 2019-03-07 and 1.2.0 dated 2019-05-05
DESCRIPTION | 8 +-- MD5 | 64 ++++++++++++++-------------- NAMESPACE | 1 NEWS | 9 +++ R/SIMMS-package.R | 1 R/calculate.meta.survival.R | 10 +++- R/calculate.network.coefficients.R | 33 ++++---------- R/centre.scale.R |only R/create.KM.plot.R | 2 R/create.classifier.multivariate.R | 2 R/derive.network.features.R | 8 +++ R/dichotomize.dataset.R | 33 ++++++++++---- R/dichotomize.meta.dataset.R | 17 ++++--- R/fit.coxmodel.R | 8 +-- R/fit.interaction.model.R | 19 ++++++-- R/get.adjacency.matrix.R | 2 R/get.chisq.stats.R | 2 R/load.cancer.datasets.R | 2 R/prepare.training.validation.datasets.R | 17 +++++-- inst/doc/Using-SIMMS.R | 1 inst/doc/Using-SIMMS.Rmd | 11 ++-- inst/doc/Using-SIMMS.html | 17 +++---- man/SIMMS-package.Rd | 3 - man/calculate.meta.survival.Rd | 9 +++ man/calculate.network.coefficients.Rd | 10 +++- man/centre.scale.dataset.Rd |only man/derive.network.features.Rd | 7 +++ man/dichotomize.dataset.Rd | 13 +++-- man/dichotomize.meta.dataset.Rd | 17 +++++-- man/fit.coxmodel.Rd | 2 man/fit.interaction.model.Rd | 8 +++ man/load.cancer.datasets.Rd | 2 man/prepare.training.validation.datasets.Rd | 18 +++++-- vignettes/Using-SIMMS.Rmd | 11 ++-- 34 files changed, 231 insertions(+), 136 deletions(-)
Title: Hydrologic Indices for Daily Time Series Data
Description: Calculates a suite of hydrologic indices for daily time series data that are widely used in hydrology and stream ecology.
Author: Nick Bond
Maintainer: Nick Bond <n.bond@latrobe.edu.au>
Diff between hydrostats versions 0.2.6 dated 2018-11-22 and 0.2.7 dated 2019-05-05
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NEWS | 5 +++++ R/CTF.R | 10 +++++----- README.md | 2 +- man/CTF.Rd | 2 +- 6 files changed, 21 insertions(+), 16 deletions(-)
Title: A Future API for Parallel and Distributed Processing using
'batchtools'
Description: Implementation of the Future API on top of the 'batchtools' package.
This allows you to process futures, as defined by the 'future' package,
in parallel out of the box, not only on your local machine or ad-hoc
cluster of machines, but also via high-performance compute ('HPC') job
schedulers such as 'LSF', 'OpenLava', 'Slurm', 'SGE', and 'TORQUE' / 'PBS',
e.g. 'y <- future.apply::future_lapply(files, FUN = process)'.
Author: Henrik Bengtsson [aut, cre, cph]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between future.batchtools versions 0.7.2 dated 2019-01-04 and 0.8.0 dated 2019-05-05
DESCRIPTION | 10 ++++---- MD5 | 20 ++++++++--------- NAMESPACE | 1 NEWS | 27 +++++++++++++++++++++++ R/BatchtoolsFuture-class.R | 50 ++++++++++++++++++++++--------------------- R/batchtools_template.R | 34 ++++++++++++++++------------- R/utils.R | 41 +++++++++++++++++++---------------- build/vignette.rds |binary tests/BatchtoolsFuture.R | 4 --- tests/incl/start,load-only.R | 4 +-- tests/zzz,future_lapply.R | 7 ++---- 11 files changed, 117 insertions(+), 81 deletions(-)
More information about future.batchtools at CRAN
Permanent link
Title: Parallel Implementation of 'ETERNA 3.40' for Prediction and
Analysis of Earth Tides
Description: This is a port of 'Fortran ETERNA 3.4'
<http://igets.u-strasbg.fr/soft_and_tool.php> by H.G. Wenzel
for calculating synthetic Earth tides using the
Hartmann and Wenzel (1994) <doi:10.1029/95GL03324> or
Kudryavtsev (2004) <doi:10.1007/s00190-003-0361-2> tidal catalogs.
Author: Jonathan Kennel [aut, cre, trl],
Beth Parker [ths],
Wenzel Hans-Georg [ctb]
Maintainer: Jonathan Kennel <jkennel@uoguelph.ca>
Diff between earthtide versions 0.0.5 dated 2019-03-28 and 0.0.6 dated 2019-05-05
earthtide-0.0.5/earthtide/R/earthtide.R |only earthtide-0.0.5/earthtide/man/Earthtide.Rd |only earthtide-0.0.6/earthtide/DESCRIPTION | 6 earthtide-0.0.6/earthtide/MD5 | 34 +-- earthtide-0.0.6/earthtide/NAMESPACE | 1 earthtide-0.0.6/earthtide/R/calc_earthtide.R |only earthtide-0.0.6/earthtide/R/earthtide-package.R | 1 earthtide-0.0.6/earthtide/R/earthtide_class.R |only earthtide-0.0.6/earthtide/R/prepare_catalog.R | 6 earthtide-0.0.6/earthtide/R/sysdata.rda |binary earthtide-0.0.6/earthtide/build/partial.rdb |binary earthtide-0.0.6/earthtide/build/vignette.rds |binary earthtide-0.0.6/earthtide/data/eterna_wavegroups.rda |binary earthtide-0.0.6/earthtide/inst/doc/introduction.R | 21 + earthtide-0.0.6/earthtide/inst/doc/introduction.Rmd | 31 ++ earthtide-0.0.6/earthtide/inst/doc/introduction.html | 26 ++ earthtide-0.0.6/earthtide/man/Earthtide_class.Rd |only earthtide-0.0.6/earthtide/man/calc_earthtide.Rd |only earthtide-0.0.6/earthtide/tests/testthat/test-earthtide.R | 112 ++++++++++ earthtide-0.0.6/earthtide/tests/testthat/test-prepare_catalog.R | 6 earthtide-0.0.6/earthtide/vignettes/introduction.Rmd | 31 ++ 21 files changed, 252 insertions(+), 23 deletions(-)