Title: 'DataCite' Client for 'OAI-PMH' Methods and their Search API
Description: Client for the web service methods provided
by 'DataCite' (<https://www.datacite.org/>), including functions to interface with
their 'OAI-PMH' 'metadata' service, and a 'RESTful' search API. The API
is backed by 'SOLR', allowing expressive queries, including faceting,
statistics on variables, and 'more-like-this' queries.
Author: Scott Chamberlain [aut, cre] (<https://orcid.org/0000-0003-1444-9135>)
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between rdatacite versions 0.4.0 dated 2018-05-27 and 0.4.2 dated 2019-05-07
DESCRIPTION | 14 +- LICENSE | 2 MD5 | 48 ++++---- NEWS.md | 8 + R/dc_data_center.R | 2 R/dc_search.R | 10 - R/dc_works.R | 8 - R/zzz.r | 6 - README.md | 136 ++++++++++++----------- man/dc_data_center.Rd | 3 man/dc_data_centers.Rd | 5 man/dc_member.Rd | 1 man/dc_members.Rd | 5 man/dc_search.Rd | 58 ++++----- man/dc_work.Rd | 1 man/dc_works.Rd | 1 tests/fixtures/vcr_cassettes/dc_search.yml | 39 +++--- tests/fixtures/vcr_cassettes/dc_search_csv.yml | 36 ++---- tests/testthat/test-dc_oai_getrecord.R | 6 - tests/testthat/test-dc_oai_identify.R | 1 tests/testthat/test-dc_oai_listidentifiers.R | 53 +++----- tests/testthat/test-dc_oai_listmetadataformats.R | 2 tests/testthat/test-dc_oai_listrecords.R | 10 + tests/testthat/test-dc_oai_listsets.R | 7 - tests/testthat/test-dc_search.R | 36 +++--- 25 files changed, 258 insertions(+), 240 deletions(-)
Title: R Commander
Description: A platform-independent basic-statistics GUI (graphical user interface) for R, based on the tcltk package.
Author: John Fox [aut, cre],
Milan Bouchet-Valat [aut],
Liviu Andronic [ctb],
Michael Ash [ctb],
Theophilius Boye [ctb],
Stefano Calza [ctb],
Andy Chang [ctb],
Philippe Grosjean [ctb],
Richard Heiberger [ctb],
Kosar Karimi Pour [ctb],
G. Jay Kerns [ctb],
Renaud Lancelot [ctb],
Matthieu Lesnoff [ctb],
Uwe Ligges [ctb],
Samir Messad [ctb],
Martin Maechler [ctb],
Robert Muenchen [ctb],
Duncan Murdoch [ctb],
Erich Neuwirth [ctb],
Dan Putler [ctb],
Brian Ripley [ctb],
Miroslav Ristic [ctb],
Peter Wolf [ctb],
Kevin Wright [ctb]
Maintainer: John Fox <jfox@mcmaster.ca>
Diff between Rcmdr versions 2.5-2 dated 2019-03-11 and 2.5-3 dated 2019-05-07
DESCRIPTION | 8 MD5 | 22 NEWS | 1193 +++--- R/commander.R | 3012 +++++++-------- R/data-menu.R | 5378 ++++++++++++++-------------- R/utilities.R | 4 build/vignette.rds |binary inst/doc/Getting-Started-with-the-Rcmdr.pdf |binary inst/etc/Thumbs.db |only inst/po/sl/LC_MESSAGES/R-Rcmdr.mo |binary man/Rcmdr-package.Rd | 136 po/R-sl.po | 124 vignettes/Thumbs.db |only 13 files changed, 4997 insertions(+), 4880 deletions(-)
Title: A Parser for 'ArchieML'
Description: Parses the 'ArchieML' format from the New York Times <http://archieml.org>.
Also provides utilities for retrieving Google Drive documents for parsing.
Author: Noam Ross [aut, cre] (<https://orcid.org/0000-0002-2136-0000>),
Michael Strickland [aut] (Author of archieml-js library)
Maintainer: Noam Ross <noam.ross@gmail.com>
Diff between rchie versions 1.0.1 dated 2019-05-05 and 1.0.2 dated 2019-05-07
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS.md | 4 ++++ tests/testthat/test-aml.R | 2 +- 4 files changed, 11 insertions(+), 7 deletions(-)
Title: Psychometric Mixture Models
Description: Psychometric mixture models based on 'flexmix' infrastructure. At the moment Rasch mixture models
with different parameterizations of the score distribution (saturated vs. mean/variance specification),
Bradley-Terry mixture models, and MPT mixture models are implemented. These mixture models can be estimated
with or without concomitant variables. See vignette('raschmix', package = 'psychomix') for details on the
Rasch mixture models.
Author: Hannah Frick [aut, cre] (<https://orcid.org/0000-0002-6049-5258>),
Friedrich Leisch [aut],
Carolin Strobl [aut],
Florian Wickelmaier [aut],
Achim Zeileis [aut] (<https://orcid.org/0000-0003-0918-3766>)
Maintainer: Hannah Frick <hannah.frick@gmail.com>
Diff between psychomix versions 1.1-6 dated 2019-03-17 and 1.1-7 dated 2019-05-07
DESCRIPTION | 8 +++--- MD5 | 44 +++++++++++++++++----------------- NEWS | 6 ++++ build/partial.rdb |binary build/vignette.rds |binary inst/doc/raschmix.R | 1 inst/doc/raschmix.Rnw | 1 inst/doc/raschmix.pdf |binary inst/doc/scores.R | 1 inst/doc/scores.Rnw | 1 inst/doc/scores.pdf |binary man/btmix.Rd | 1 man/effectsplot.Rd | 1 man/mptmix.Rd | 1 man/raschmix.Rd | 1 man/simRaschmix.Rd | 2 + tests/Examples/psychomix-Ex.Rout.save | 9 ++++-- tests/test.R | 1 tests/test.Rout.save | 7 +++-- vignettes/raschmix.Rnw | 1 vignettes/raschmix.Rout.save | 4 ++- vignettes/scores.Rnw | 1 vignettes/scores.Rout.save | 4 ++- 23 files changed, 61 insertions(+), 34 deletions(-)
Title: Geostatistical Modelling of Spatially Referenced Prevalence Data
Description: Provides functions for both likelihood-based
and Bayesian analysis of spatially referenced prevalence data, and is
also an extension of the 'geoR' package.
Author: Emanuele Giorgi, Peter J. Diggle
Maintainer: Emanuele Giorgi <e.giorgi@lancaster.ac.uk>
Diff between PrevMap versions 1.5 dated 2019-04-24 and 1.5.1 dated 2019-05-07
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/foo.R | 11 +++++------ inst/doc/PrevMap.pdf | 14 +++++++------- man/glgm.LA.Rd | 4 ++-- 5 files changed, 22 insertions(+), 23 deletions(-)
Title: Moments of Folded and Doubly Truncated Multivariate
Distributions
Description: It computes the raw moments for the folded and truncated multivariate normal, Skew-normal (SN), Extended skew normal (ESN) and Student's t-distribution. It also offers specific functions to compute the mean and variance-covariance matrix as well as the cumulative distribution function (cdf) for the folded normal, SN, ESN, and folded t-distribution. Algorithms are extensions based on Kan, R., & Robotti, C. (2017) <doi:10.1080/10618600.2017.1322092>.
Author: Christian E. Galarza, Victor H. Lachos
Maintainer: Christian E. Galarza <cgalarza88@gmail.com>
Diff between MomTrunc versions 1.41 dated 2018-02-11 and 2.37 dated 2019-05-07
MomTrunc-1.41/MomTrunc/R/auxiliar.R |only MomTrunc-1.41/MomTrunc/R/cdfFMD.R |only MomTrunc-1.41/MomTrunc/R/functions.R |only MomTrunc-1.41/MomTrunc/R/meanvarFMD.R |only MomTrunc-1.41/MomTrunc/R/meanvarTMD.R |only MomTrunc-1.41/MomTrunc/R/momentsFMD.R |only MomTrunc-1.41/MomTrunc/R/momentsTMD.R |only MomTrunc-2.37/MomTrunc/DESCRIPTION | 8 ++-- MomTrunc-2.37/MomTrunc/MD5 | 52 +++++++++++++++++++++-------- MomTrunc-2.37/MomTrunc/NAMESPACE | 3 + MomTrunc-2.37/MomTrunc/R/AUX_esn.R |only MomTrunc-2.37/MomTrunc/R/AUX_olds.R |only MomTrunc-2.37/MomTrunc/R/AUX_qfuns.R |only MomTrunc-2.37/MomTrunc/R/ESN_mv.R |only MomTrunc-2.37/MomTrunc/R/FESN1_mv.R |only MomTrunc-2.37/MomTrunc/R/FESN_cdf.R |only MomTrunc-2.37/MomTrunc/R/FESN_mom.R |only MomTrunc-2.37/MomTrunc/R/FESN_mv.R |only MomTrunc-2.37/MomTrunc/R/FN_mom.R |only MomTrunc-2.37/MomTrunc/R/FN_mv.R |only MomTrunc-2.37/MomTrunc/R/FT_cdf.R |only MomTrunc-2.37/MomTrunc/R/FT_mom.R |only MomTrunc-2.37/MomTrunc/R/FT_mv.R |only MomTrunc-2.37/MomTrunc/R/TESN1_mean.R |only MomTrunc-2.37/MomTrunc/R/TESN1_mv.R |only MomTrunc-2.37/MomTrunc/R/TESN_mom.R |only MomTrunc-2.37/MomTrunc/R/TESN_mv.R |only MomTrunc-2.37/MomTrunc/R/TN1_mean.R |only MomTrunc-2.37/MomTrunc/R/TN1_mv.R |only MomTrunc-2.37/MomTrunc/R/TN_mom.R |only MomTrunc-2.37/MomTrunc/R/TN_mv.R |only MomTrunc-2.37/MomTrunc/R/TN_mv_Kan.R |only MomTrunc-2.37/MomTrunc/R/TN_mv_Vaida.R |only MomTrunc-2.37/MomTrunc/R/TT_mean.R |only MomTrunc-2.37/MomTrunc/R/TT_mom.R |only MomTrunc-2.37/MomTrunc/R/TT_mv.R |only MomTrunc-2.37/MomTrunc/R/USER_cdfFMD.R |only MomTrunc-2.37/MomTrunc/R/USER_meanvarFMD.R |only MomTrunc-2.37/MomTrunc/R/USER_meanvarTMD.R |only MomTrunc-2.37/MomTrunc/R/USER_momentsFMD.R |only MomTrunc-2.37/MomTrunc/R/USER_momentsTMD.R |only MomTrunc-2.37/MomTrunc/man/cdfFMD.Rd | 28 +++++++++++---- MomTrunc-2.37/MomTrunc/man/meanvarFMD.Rd | 32 +++++++++++------ MomTrunc-2.37/MomTrunc/man/meanvarTMD.Rd | 37 +++++++++++++------- MomTrunc-2.37/MomTrunc/man/momentsFMD.Rd | 29 ++++++++++------ MomTrunc-2.37/MomTrunc/man/momentsTMD.Rd | 34 ++++++++++++------ 46 files changed, 150 insertions(+), 73 deletions(-)
Title: Multivariate and Propensity Score Matching with Balance
Optimization
Description: Provides functions for multivariate and propensity score matching
and for finding optimal balance based on a genetic search algorithm.
A variety of univariate and multivariate metrics to
determine if balance has been obtained are also provided.
Author: Jasjeet Singh Sekhon <sekhon@berkeley.edu>
Maintainer: Jasjeet Singh Sekhon <sekhon@berkeley.edu>
Diff between Matching versions 4.9-5 dated 2019-03-07 and 4.9-6 dated 2019-05-07
DESCRIPTION | 8 ++++---- MD5 | 18 +++++++++--------- tests/AbadieImbens.R | 1 + tests/AbadieImbens.Rout.save | 9 +++++---- tests/DehejiaWahba.R | 1 + tests/DehejiaWahba.Rout.save | 9 +++++---- tests/GenMatch.R | 1 + tests/GenMatch.Rout.save | 9 +++++---- tests/Matchby.R | 1 + tests/Matchby.Rout.save | 9 +++++---- 10 files changed, 37 insertions(+), 29 deletions(-)
Title: Gene-Ranking Analysis of Pathway Expression
Description: Gene-Ranking Analysis of Pathway Expression (GRAPE) is a tool for
summarizing the consensus behavior of biological pathways in the form of a
template, and for quantifying the extent to which individual samples deviate
from the template. GRAPE templates are based only on the relative rankings
of the genes within the pathway and can be used for classification of tissue
types or disease subtypes. GRAPE can be used to represent gene-expression
samples as vectors of pathway scores, where each pathway score indicates the
departure from a given collection of reference samples. The resulting pathway-
space representation can be used as the feature set for various applications,
including survival analysis and drug-response prediction.
Users of GRAPE should use the following citation:
Klein MI, Stern DF, and Zhao H. GRAPE: A pathway template method to characterize
tissue-specific functionality from gene expression profiles.
BMC Bioinformatics, 18:317 (June 2017).
Author: Michael Klein <michael.klein@yale.edu>
Maintainer: Michael Klein <michael.klein@yale.edu>
Diff between GRAPE versions 0.1.0 dated 2016-08-25 and 0.1.1 dated 2019-05-07
DESCRIPTION | 20 +++++++++----------- MD5 | 20 ++++++++++---------- man/getPathwayScores.Rd | 1 - man/makeBinaryTemplateAndProbabilityTemplate.Rd | 1 - man/makeGRAPE_psMat.Rd | 1 - man/makePairwiseOrder.Rd | 1 - man/makePairwiseOrderNames.Rd | 1 - man/predictClassDIRAC.Rd | 1 - man/predictClassGRAPE.Rd | 1 - man/predictClassPC.Rd | 1 - man/w_quad.Rd | 1 - 11 files changed, 19 insertions(+), 30 deletions(-)
Title: Handy File and String Manipulation
Description: This started out as a package for file and string manipulation.
Since then, the 'fs' and 'strex' packages emerged, offering functionality
previously given by this package (but it's done better in these new ones).
Those packages have hence almost pushed 'filesstrings' into extinction.
However, it still has a small number of unique, handy file manipulation
functions which can be seen in the vignette.
One example is a function to remove spaces from all file names in a
directory.
Author: Rory Nolan [aut, cre, cph] (<https://orcid.org/0000-0002-5239-4043>),
Sergi Padilla-Parra [ths] (<https://orcid.org/0000-0002-8010-9481>)
Maintainer: Rory Nolan <rorynoolan@gmail.com>
Diff between filesstrings versions 3.0.0 dated 2018-10-30 and 3.1.0 dated 2019-05-07
filesstrings-3.0.0/filesstrings/R/RcppExports.R |only filesstrings-3.0.0/filesstrings/R/filesstrings-defunct.R |only filesstrings-3.0.0/filesstrings/R/filesstrings.R |only filesstrings-3.0.0/filesstrings/man/filesstrings-defunct.Rd |only filesstrings-3.0.0/filesstrings/man/str_nth_instance_indices.Rd |only filesstrings-3.0.0/filesstrings/src |only filesstrings-3.0.0/filesstrings/tests/testthat/test-str-num-before-examples.R |only filesstrings-3.1.0/filesstrings/DESCRIPTION | 20 filesstrings-3.1.0/filesstrings/MD5 | 126 ++--- filesstrings-3.1.0/filesstrings/NAMESPACE | 78 +++ filesstrings-3.1.0/filesstrings/NEWS.md | 136 +++--- filesstrings-3.1.0/filesstrings/R/all-equal.R | 2 filesstrings-3.1.0/filesstrings/R/arg-match.R | 4 filesstrings-3.1.0/filesstrings/R/can-be-num.R | 4 filesstrings-3.1.0/filesstrings/R/files.R | 8 filesstrings-3.1.0/filesstrings/R/filesstrings-package.R |only filesstrings-3.1.0/filesstrings/R/str-after.R | 27 - filesstrings-3.1.0/filesstrings/R/str-before.R | 47 +- filesstrings-3.1.0/filesstrings/R/str-currency.R | 32 + filesstrings-3.1.0/filesstrings/R/str-elem.R | 31 + filesstrings-3.1.0/filesstrings/R/str-extract-non-nums.R | 17 filesstrings-3.1.0/filesstrings/R/str-extract-nums.R | 16 filesstrings-3.1.0/filesstrings/R/str-give-ext.R | 4 filesstrings-3.1.0/filesstrings/R/str-locate.R | 26 - filesstrings-3.1.0/filesstrings/R/str-nice-nums.R | 12 filesstrings-3.1.0/filesstrings/R/str-num-after.R | 38 + filesstrings-3.1.0/filesstrings/R/str-num-before.R | 211 +++------- filesstrings-3.1.0/filesstrings/R/str-pad.R | 4 filesstrings-3.1.0/filesstrings/R/str-put-in-pos.R | 4 filesstrings-3.1.0/filesstrings/R/str-remove.R | 4 filesstrings-3.1.0/filesstrings/R/str-singleize.R | 4 filesstrings-3.1.0/filesstrings/R/str-split-by-nums.R | 18 filesstrings-3.1.0/filesstrings/R/str-split.R | 4 filesstrings-3.1.0/filesstrings/R/str-to-vec.R | 4 filesstrings-3.1.0/filesstrings/R/str-trim.R | 4 filesstrings-3.1.0/filesstrings/build/partial.rdb |binary filesstrings-3.1.0/filesstrings/build/vignette.rds |binary filesstrings-3.1.0/filesstrings/inst/WORDLIST | 25 - filesstrings-3.1.0/filesstrings/inst/doc/files.html | 43 +- filesstrings-3.1.0/filesstrings/man/all_equal.Rd | 2 filesstrings-3.1.0/filesstrings/man/before_last_dot.Rd | 3 filesstrings-3.1.0/filesstrings/man/can_be_numeric.Rd | 3 filesstrings-3.1.0/filesstrings/man/currency.Rd | 36 + filesstrings-3.1.0/filesstrings/man/extend_char_vec.Rd | 3 filesstrings-3.1.0/filesstrings/man/extract_non_numerics.Rd | 57 ++ filesstrings-3.1.0/filesstrings/man/extract_numbers.Rd | 68 ++- filesstrings-3.1.0/filesstrings/man/filesstrings.Rd | 2 filesstrings-3.1.0/filesstrings/man/give_ext.Rd | 3 filesstrings-3.1.0/filesstrings/man/locate_braces.Rd | 3 filesstrings-3.1.0/filesstrings/man/match_arg.Rd | 15 filesstrings-3.1.0/filesstrings/man/nice_nums.Rd | 13 filesstrings-3.1.0/filesstrings/man/nth_number_after_mth.Rd | 101 ++++ filesstrings-3.1.0/filesstrings/man/nth_number_before_mth.Rd | 121 ++++- filesstrings-3.1.0/filesstrings/man/put_in_pos.Rd | 3 filesstrings-3.1.0/filesstrings/man/remove_quoted.Rd | 3 filesstrings-3.1.0/filesstrings/man/singleize.Rd | 15 filesstrings-3.1.0/filesstrings/man/str_after_nth.Rd | 44 +- filesstrings-3.1.0/filesstrings/man/str_before_nth.Rd |only filesstrings-3.1.0/filesstrings/man/str_elem.Rd | 5 filesstrings-3.1.0/filesstrings/man/str_elems.Rd |only filesstrings-3.1.0/filesstrings/man/str_locate_nth.Rd |only filesstrings-3.1.0/filesstrings/man/str_paste_elems.Rd | 15 filesstrings-3.1.0/filesstrings/man/str_split_by_nums.Rd | 24 + filesstrings-3.1.0/filesstrings/man/str_split_camel_case.Rd | 3 filesstrings-3.1.0/filesstrings/man/str_to_vec.Rd | 5 filesstrings-3.1.0/filesstrings/man/trim_anything.Rd | 5 filesstrings-3.1.0/filesstrings/tests/spelling.R | 6 filesstrings-3.1.0/filesstrings/tests/testthat/test_strings.R | 96 +++- filesstrings-3.1.0/filesstrings/tests/testthat/test_utils.R | 1 69 files changed, 1087 insertions(+), 521 deletions(-)
Title: Computation of Parameters Used in Preliminary Assessment of
Conservation Status
Description: Multi-species estimation of geographical range parameters
for preliminary assessment of conservation status following Criterion B of the
International Union for Conservation of Nature (IUCN,
see <http://www.iucnredlist.org>).
Author: Gilles Dauby
Maintainer: Gilles Dauby <gildauby@gmail.com>
Diff between ConR versions 1.2.2 dated 2018-06-07 and 1.2.3 dated 2019-05-07
ConR-1.2.2/ConR/vignettes/my-vignette.md |only ConR-1.2.3/ConR/DESCRIPTION | 8 ConR-1.2.3/ConR/MD5 | 41 ConR-1.2.3/ConR/NAMESPACE | 5 ConR-1.2.3/ConR/R/IUCNeval.functionv11.R | 1102 ++++++---- ConR-1.2.3/ConR/README.md | 2 ConR-1.2.3/ConR/build/partial.rdb |binary ConR-1.2.3/ConR/build/vignette.rds |binary ConR-1.2.3/ConR/inst/doc/my-vignette.R | 17 ConR-1.2.3/ConR/inst/doc/my-vignette.Rmd | 17 ConR-1.2.3/ConR/inst/doc/my-vignette.html | 187 - ConR-1.2.3/ConR/man/AOO.computing.Rd |only ConR-1.2.3/ConR/man/EOO.computing.Rd | 4 ConR-1.2.3/ConR/man/IUCN.eval.Rd | 14 ConR-1.2.3/ConR/man/locations.comp.Rd |only ConR-1.2.3/ConR/tests/testthat/EOO.results.csv | 8 ConR-1.2.3/ConR/tests/testthat/IUCN_results.xlsx |only ConR-1.2.3/ConR/tests/testthat/test-1.R | 8 ConR-1.2.3/ConR/vignettes/IUCN__results_map/number_of_records.png |binary ConR-1.2.3/ConR/vignettes/IUCN__results_map/number_threatened_sp.png |binary ConR-1.2.3/ConR/vignettes/IUCN__results_map/proportion_threatened_sp.png |binary ConR-1.2.3/ConR/vignettes/IUCN__results_map/species_richness.png |binary ConR-1.2.3/ConR/vignettes/MyIUCNresults_results_map |only ConR-1.2.3/ConR/vignettes/my-vignette.Rmd | 17 24 files changed, 914 insertions(+), 516 deletions(-)
Title: Verbose Assertions for Tabular Data (Data.frames and
Data.tables)
Description: Simple, flexible, assertions on data.frame or data.table objects with verbose output for vetting. While other assertion packages apply towards more general use-cases, assertable is tailored towards tabular data. It includes functions to check variable names and values, whether the dataset contains all combinations of a given set of unique identifiers, and whether it is a certain length. In addition, assertable includes utility functions to check the existence of target files and to efficiently import multiple tabular data files into one data.table.
Author: Grant Nguyen [aut, cre]
Maintainer: Grant Nguyen <grant.nguyen@gmail.com>
Diff between assertable versions 0.2.4 dated 2017-06-28 and 0.2.5 dated 2019-05-07
DESCRIPTION | 12 MD5 | 62 +- NAMESPACE | 18 R/assert_colnames.R | 72 +- R/assert_ids.R | 274 +++++------ R/assert_nrows.R | 30 - R/assert_values.R | 226 ++++----- R/check_files.R | 180 +++---- R/import_files.R | 132 ++--- README.md | 8 build/vignette.rds |binary inst/doc/assertion_template.R | 134 ++--- inst/doc/assertion_template.Rmd | 236 ++++----- inst/doc/assertion_template.html | 665 ++++++++++++++++++--------- inst/doc/data_assertion_intro.R | 230 ++++----- inst/doc/data_assertion_intro.Rmd | 468 +++++++++---------- inst/doc/data_assertion_intro.html | 903 +++++++++++++++++++++++-------------- inst/doc/file_assertion_intro.R | 90 +-- inst/doc/file_assertion_intro.Rmd | 178 +++---- inst/doc/file_assertion_intro.html | 585 ++++++++++++++++------- inst/extdata/file_1.csv | 170 +++--- inst/extdata/file_2.csv | 170 +++--- inst/extdata/file_3.csv | 170 +++--- man/assert_colnames.Rd | 50 +- man/assert_ids.Rd | 98 ++-- man/assert_nrows.Rd | 44 - man/assert_values.Rd | 127 ++--- man/check_files.Rd | 85 +-- man/import_files.Rd | 104 ++-- vignettes/assertion_template.Rmd | 236 ++++----- vignettes/data_assertion_intro.Rmd | 468 +++++++++---------- vignettes/file_assertion_intro.Rmd | 178 +++---- 32 files changed, 3546 insertions(+), 2857 deletions(-)
Title: Embedded Conic Solver in R
Description: R interface to the Embedded COnic Solver (ECOS), an efficient
and robust C library for convex problems. Conic and equality
constraints can be specified in addition to integer and
boolean variable constraints for mixed-integer problems. This
R interface is inspired by the python interface and has
similar calling conventions.
Author: Anqi Fu [aut],
Balasubramanian Narasimhan [aut, cre],
Florian Schwendinger [ctb]
Maintainer: Balasubramanian Narasimhan <naras@stat.Stanford.EDU>
Diff between ECOSolveR versions 0.5 dated 2019-03-20 and 0.5.1 dated 2019-05-07
DESCRIPTION | 8 ++++---- MD5 | 16 +++++++++------- NEWS.md | 8 ++++++++ build/vignette.rds |binary inst/doc/examples.html | 17 +++++++++++------ src/Makevars | 4 +++- src/Makevars.win | 4 +++- src/ecos-2954b2a-changes/include/glblopts.h |only src/ecos/include/glblopts.h | 8 ++++++-- tests/testthat/test-ecos-nan.R |only 10 files changed, 44 insertions(+), 21 deletions(-)
Title: Some Functions to be Used as Shortcuts in 'RStudio'
Description: 'RStudio' as of recently offers the option to define addins and assign shortcuts to them. This package contains addins for a few most frequently used functions in a data scientist's (at least mine) daily work (like str(), example(), plot(), head(), view(), Desc()). Most of these functions will use the current selection in the editor window and send the specific command to the console while instantly executing it. Assigning shortcuts to these addins will save you quite a few keystrokes.
Author: Andri Signorell
Maintainer: Andri Signorell <andri@signorell.net>
Diff between DescToolsAddIns versions 1.1 dated 2018-11-14 and 1.2 dated 2019-05-07
DESCRIPTION | 8 ++-- MD5 | 12 +++--- NAMESPACE | 7 ++- NEWS | 16 ++++++++ R/AddIns.R | 93 ++++++++++++++++++++++++++++++++++-------------- inst/rstudio/addins.dcf | 9 ++++ man/DescToolsAddIns.Rd | 17 ++++++-- 7 files changed, 118 insertions(+), 44 deletions(-)
More information about DescToolsAddIns at CRAN
Permanent link
Title: Utilizes the Black-Scholes Option Pricing Model to Perform
Strategic Option Analysis and Plot Option Strategies
Description: Utilizes the Black-Scholes-Merton option pricing model to
calculate key option analytics and graphical analysis of various option strategies.
Provides functions to calculate the option premium and option
greeks of European-style options.
Author: John T. Buynak [aut, cre]
Maintainer: John T. Buynak <jbuynak94@gmail.com>
Diff between optionstrat versions 1.1.0 dated 2019-02-16 and 1.2.0 dated 2019-05-07
optionstrat-1.1.0/optionstrat/R/hello.R |only optionstrat-1.2.0/optionstrat/DESCRIPTION | 6 optionstrat-1.2.0/optionstrat/MD5 | 73 +++++----- optionstrat-1.2.0/optionstrat/NAMESPACE | 1 optionstrat-1.2.0/optionstrat/R/optionstrat.R |only optionstrat-1.2.0/optionstrat/build/vignette.rds |binary optionstrat-1.2.0/optionstrat/inst/doc/optionstrat_vignette.Rmd | 1 optionstrat-1.2.0/optionstrat/inst/doc/optionstrat_vignette.html | 5 optionstrat-1.2.0/optionstrat/man/calldelta.Rd | 2 optionstrat-1.2.0/optionstrat/man/calleval.Rd | 2 optionstrat-1.2.0/optionstrat/man/callgreek.Rd | 2 optionstrat-1.2.0/optionstrat/man/callpremium.Rd | 2 optionstrat-1.2.0/optionstrat/man/callrho.Rd | 2 optionstrat-1.2.0/optionstrat/man/calltheta.Rd | 2 optionstrat-1.2.0/optionstrat/man/dv.Rd | 2 optionstrat-1.2.0/optionstrat/man/iv.calc.Rd | 2 optionstrat-1.2.0/optionstrat/man/lambda.Rd |only optionstrat-1.2.0/optionstrat/man/opteval.Rd | 2 optionstrat-1.2.0/optionstrat/man/optiongamma.Rd | 2 optionstrat-1.2.0/optionstrat/man/optionvega.Rd | 2 optionstrat-1.2.0/optionstrat/man/plotbearcall.Rd | 2 optionstrat-1.2.0/optionstrat/man/plotbearput.Rd | 2 optionstrat-1.2.0/optionstrat/man/plotbullcall.Rd | 2 optionstrat-1.2.0/optionstrat/man/plotbullput.Rd | 2 optionstrat-1.2.0/optionstrat/man/plotdv.Rd | 2 optionstrat-1.2.0/optionstrat/man/plotvertical.Rd | 2 optionstrat-1.2.0/optionstrat/man/prob.above.Rd | 2 optionstrat-1.2.0/optionstrat/man/prob.below.Rd | 2 optionstrat-1.2.0/optionstrat/man/prob.btwn.Rd | 2 optionstrat-1.2.0/optionstrat/man/putdelta.Rd | 2 optionstrat-1.2.0/optionstrat/man/puteval.Rd | 2 optionstrat-1.2.0/optionstrat/man/putgreek.Rd | 2 optionstrat-1.2.0/optionstrat/man/putpremium.Rd | 2 optionstrat-1.2.0/optionstrat/man/putrho.Rd | 2 optionstrat-1.2.0/optionstrat/man/puttheta.Rd | 2 optionstrat-1.2.0/optionstrat/man/r.cont.Rd | 2 optionstrat-1.2.0/optionstrat/man/tdiff.Rd | 2 optionstrat-1.2.0/optionstrat/man/vertical.Rd | 2 optionstrat-1.2.0/optionstrat/vignettes/optionstrat_vignette.Rmd | 1 39 files changed, 75 insertions(+), 70 deletions(-)
Title: Quantified Risk Assessment Data Collection
Description: An open source process for collecting quantified data inputs from
subject matter experts. Intended for feeding into an OpenFAIR analysis
<https://www2.opengroup.org/ogsys/catalog/C13K> using
a tool such as 'evaluator' <https://evaluator.tidyrisk.org>.
Author: David Severski [aut, cre] (<https://orcid.org/0000-0001-7867-0459>)
Maintainer: David Severski <davidski@deadheaven.com>
Diff between collector versions 0.1.0 dated 2019-04-24 and 0.1.1 dated 2019-05-07
DESCRIPTION | 10 - MD5 | 131 ++++++++-------- NAMESPACE | 240 +++++++++++++++--------------- NEWS.md | 6 R/data.R | 46 ++--- R/make_scorecard.R | 2 R/make_slides.R | 25 +-- R/prepare_data.R | 2 R/utils.R | 40 +++-- README.md | 45 +++-- build |only data/mc_sme_top_domains.rda |binary inst/WORDLIST | 4 inst/doc |only man/calibration_questions.Rd | 44 ++--- man/check_readability.Rd | 49 +++--- man/clean_answers.Rd | 79 +++++---- man/collector.Rd | 28 +-- man/combine_capability_parameters.Rd | 44 ++--- man/combine_lognorm.Rd | 78 ++++----- man/combine_lognorm_trunc.Rd | 82 +++++----- man/combine_norm.Rd | 80 +++++----- man/combine_scenario_parameters.Rd | 46 ++--- man/derive_controls.Rd | 58 +++---- man/enforce_tidyrisk_question_set.Rd | 34 ++-- man/enforce_tidyrisk_response_set.Rd | 34 ++-- man/fit_capabilities.Rd | 72 ++++----- man/fit_capabilities_geomean.Rd | 74 ++++----- man/fit_lognorm.Rd | 78 ++++----- man/fit_lognorm_trunc.Rd | 88 +++++------ man/fit_norm_trunc.Rd | 90 +++++------ man/fit_pois.Rd | 80 +++++----- man/fit_scenarios.Rd | 100 ++++++------ man/fit_scenarios_geomean.Rd | 72 ++++----- man/fit_threat_communities.Rd | 74 ++++----- man/generate_cost_function.Rd | 78 ++++----- man/generate_weights.Rd | 44 ++--- man/get_smes_domains.Rd | 53 +++--- man/is_tidyrisk_question_set.Rd | 40 ++--- man/is_tidyrisk_response_set.Rd | 40 ++--- man/lognormal_to_normal.Rd | 78 ++++----- man/make_handouts.Rd | 58 +++---- man/make_scorecard.Rd | 72 ++++----- man/make_slides.Rd | 64 ++++---- man/mc_calibration_answers.Rd | 50 +++--- man/mc_capabilities.Rd | 46 ++--- man/mc_capability_answers.Rd | 50 +++--- man/mc_capability_parameters_fitted.Rd | 60 +++---- man/mc_domains.Rd | 48 +++--- man/mc_scenario_answers.Rd | 54 +++--- man/mc_scenario_parameters_fitted.Rd | 74 ++++----- man/mc_scenarios.Rd | 50 +++--- man/mc_sme_top_domains.Rd | 50 ++---- man/mc_threat_communities.Rd | 54 +++--- man/mc_threat_parameters_fitted.Rd | 64 ++++---- man/normal_to_lognormal.Rd | 78 ++++----- man/pipe.Rd | 24 +-- man/prepare_data.Rd | 94 +++++------ man/read_questions.Rd | 78 ++++++--- man/read_responses.Rd | 54 +++--- man/tidyrisk_question_set.Rd | 88 +++++------ man/tidyrisk_response_set.Rd | 70 ++++---- tests/testthat/Rplots.pdf |only tests/testthat/natalie_wade_scorecard.pdf |only tests/testthat/test-make_scorecard.R | 10 - tests/testthat/test-make_slides.R | 5 tests/testthat/test-utils.R | 6 vignettes |only 68 files changed, 1825 insertions(+), 1744 deletions(-)
Title: SEER and Atomic Bomb Survivor Data Analysis Tools
Description: Creates SEER (Surveillance, Epidemiology and End Results) and
A-bomb data binaries from ASCII sources and provides tools for estimating
SEER second cancer risks. Methods are described in <doi:10.1038/leu.2015.258>.
Author: Tomas Radivoyevitch [aut, cre],
R. Molenaar [ctb]
Maintainer: Tomas Radivoyevitch <radivot@ccf.org>
Diff between SEERaBomb versions 2018.1 dated 2018-05-11 and 2019.1 dated 2019-05-07
SEERaBomb-2018.1/SEERaBomb/inst/doc |only SEERaBomb-2019.1/SEERaBomb/DESCRIPTION | 26 +- SEERaBomb-2019.1/SEERaBomb/MD5 | 206 ++++++++++---------- SEERaBomb-2019.1/SEERaBomb/NAMESPACE | 5 SEERaBomb-2019.1/SEERaBomb/NEWS | 36 +++ SEERaBomb-2019.1/SEERaBomb/R/csd.R | 2 SEERaBomb-2019.1/SEERaBomb/R/esd.R | 5 SEERaBomb-2019.1/SEERaBomb/R/getE.R | 59 +++-- SEERaBomb-2019.1/SEERaBomb/R/mapCancs.R | 5 SEERaBomb-2019.1/SEERaBomb/R/mk2D.R | 30 +- SEERaBomb-2019.1/SEERaBomb/R/mkAbomb.R | 8 SEERaBomb-2019.1/SEERaBomb/R/mkLT.R |only SEERaBomb-2019.1/SEERaBomb/R/mkMrtLocal.R |only SEERaBomb-2019.1/SEERaBomb/R/msd.R | 4 SEERaBomb-2019.1/SEERaBomb/R/plot2D.R | 6 SEERaBomb-2019.1/SEERaBomb/R/post1PYO.R | 2 SEERaBomb-2019.1/SEERaBomb/R/post1PYOc.R | 2 SEERaBomb-2019.1/SEERaBomb/R/post1PYOm.R | 2 SEERaBomb-2019.1/SEERaBomb/R/simSurv.R |only SEERaBomb-2019.1/SEERaBomb/inst/docs |only SEERaBomb-2019.1/SEERaBomb/man/SEERaBomb-package.Rd | 17 - SEERaBomb-2019.1/SEERaBomb/man/csd.Rd | 8 SEERaBomb-2019.1/SEERaBomb/man/fillPYM.Rd | 4 SEERaBomb-2019.1/SEERaBomb/man/mkAbomb.Rd | 14 - SEERaBomb-2019.1/SEERaBomb/man/mkLT.Rd |only SEERaBomb-2019.1/SEERaBomb/man/mkMrt.Rd | 5 SEERaBomb-2019.1/SEERaBomb/man/mkMrtLocal.Rd |only SEERaBomb-2019.1/SEERaBomb/man/simSurv.Rd |only SEERaBomb-2019.1/SEERaBomb/src/fillPYM.cpp | 2 29 files changed, 265 insertions(+), 183 deletions(-)
Title: Detects Fraud in Online Surveys by Tracing, Scoring, and
Visualizing IP Addresses
Description: Takes an array of IPs and the keys for the services the user wishes to use (IP Hub, IP Intel, and Proxycheck),
and passes these to all respective APIs. Returns a dataframe with the IP addresses (used for merging),
country, ISP, labels for non-US IP Addresses, VPS use, and recommendations for blocking. The package
also provides optional visualization tools for checking the distributions.
Author: Ryan Kennedy [aut, cre],
Philip Waggoner [aut],
Scott Clifford [ctb]
Maintainer: Ryan Kennedy <rkennedy@uh.edu>
Diff between rIP versions 1.1.1 dated 2019-04-23 and 1.1.2 dated 2019-05-07
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- R/rIP.R | 9 ++++++--- 3 files changed, 12 insertions(+), 9 deletions(-)
Title: Parallel Version of the L-BFGS-B Optimization Method
Description: Provides a parallel version of the L-BFGS-B method of optim(). The main function of the package is optimParallel(), which has the same usage and output as optim(). Using optimParallel() can significantly reduce the optimization time.
Author: Florian Gerber
Maintainer: Florian Gerber <florian.gerber@math.uzh.ch>
Diff between optimParallel versions 0.8 dated 2019-02-25 and 0.8-1 dated 2019-05-07
DESCRIPTION | 8 +++--- MD5 | 14 +++++------ NEWS | 6 ++++ R/optimParallel.R | 31 ++++++++++++++++++++----- build/vignette.rds |binary man/optimParallel.Rd | 44 +++++++++++++++++++++++++++++++++++- tests/testthat/test-issues.R | 18 ++++++++++++++ tests/testthat/test-optimParallel.R | 4 --- 8 files changed, 104 insertions(+), 21 deletions(-)
Title: Find Optimal Sampling Locations Based on Spatial Covariate(s)
Description: Create sampling designs using the surface reconstruction algorithm.
Original method by: Olsson, D. 2002. A method to optimize soil sampling from
ancillary data. Poster presenterad at: NJF seminar no. 336,
Implementation of Precision Farming in Practical Agriculture, 10-12
June 2002, Skara, Sweden.
Author: Kristin Piikki & Mats Söderström
Maintainer: Kristin Piikki <kristin.piikki@slu.se>
Diff between SurfaceTortoise versions 0.1.0 dated 2018-04-05 and 1.0.0 dated 2019-05-07
SurfaceTortoise-0.1.0/SurfaceTortoise/R/sr.R |only SurfaceTortoise-0.1.0/SurfaceTortoise/R/sr_dir_sample.R |only SurfaceTortoise-0.1.0/SurfaceTortoise/R/sr_export.R |only SurfaceTortoise-0.1.0/SurfaceTortoise/R/sr_grid_sample.R |only SurfaceTortoise-0.1.0/SurfaceTortoise/R/sr_import.R |only SurfaceTortoise-0.1.0/SurfaceTortoise/R/sr_prepare.R |only SurfaceTortoise-0.1.0/SurfaceTortoise/R/sr_rand_sample.R |only SurfaceTortoise-0.1.0/SurfaceTortoise/R/sr_stratify.R |only SurfaceTortoise-0.1.0/SurfaceTortoise/man/prepare.Rd |only SurfaceTortoise-1.0.0/SurfaceTortoise/DESCRIPTION | 14 - SurfaceTortoise-1.0.0/SurfaceTortoise/LICENSE | 2 SurfaceTortoise-1.0.0/SurfaceTortoise/MD5 | 22 - SurfaceTortoise-1.0.0/SurfaceTortoise/NAMESPACE | 11 SurfaceTortoise-1.0.0/SurfaceTortoise/R/boundary-data.R | 4 SurfaceTortoise-1.0.0/SurfaceTortoise/R/tortoise.R |only SurfaceTortoise-1.0.0/SurfaceTortoise/man/boundary.Rd | 4 SurfaceTortoise-1.0.0/SurfaceTortoise/man/tortoise.Rd | 178 +++++++-------- 17 files changed, 106 insertions(+), 129 deletions(-)
More information about SurfaceTortoise at CRAN
Permanent link
Title: Create Interactive Chart with the JavaScript 'Billboard' Library
Description: Provides an 'htmlwidgets' interface to 'billboard.js',
a re-usable easy interface JavaScript chart library, based on D3 v4+.
Chart types include line charts, scatterplots, bar/lollipop charts, histogram/density plots, pie/donut charts and gauge charts.
All charts are interactive, and a proxy method is implemented to smoothly update a chart without rendering it again in 'shiny' apps.
Author: Victor Perrier [aut, cre],
Fanny Meyer [aut],
NAVER Corp [cph] (billboard library)
Maintainer: Victor Perrier <victor.perrier@dreamrs.fr>
Diff between billboarder versions 0.2.5 dated 2019-01-03 and 0.2.6 dated 2019-05-07
DESCRIPTION | 6 MD5 | 40 NAMESPACE | 4 NEWS.md | 9 R/bauge.R |only R/billboarder-shiny.R | 86 + R/billboarder.R | 4 README.md | 10 build/vignette.rds |binary inst/doc/billboarder-intro.html | 1682 +++++++++++++++++++++++++++++++--- inst/doc/billboarder-mapping.Rmd | 2 inst/doc/billboarder-mapping.html | 1575 ++++++++++++++++++++++++++++++-- inst/doc/billboarder-options.html | 1787 ++++++++++++++++++++++++++++++++----- inst/doc/billboarder.R |only inst/doc/billboarder.Rmd |only inst/doc/billboarder.html |only inst/htmlwidgets/bauge.js |only inst/htmlwidgets/bauge.yaml |only inst/htmlwidgets/billboarder.js | 8 inst/htmlwidgets/billboarder.yaml | 4 inst/htmlwidgets/lib/billboard-1.8 |only man/bauge-shiny.Rd |only man/bauge.Rd |only man/bb_proxy_flow.Rd |only vignettes/billboarder-mapping.Rmd | 2 vignettes/billboarder.Rmd |only 26 files changed, 4755 insertions(+), 464 deletions(-)
Title: Regularized Structural Equation Modeling
Description: Uses both ridge and lasso penalties (and extensions) to penalize
specific parameters in structural equation models. The package offers additional
cost functions, cross validation, and other extensions beyond traditional structural
equation models. Also contains a function to perform exploratory mediation (XMed).
Author: Ross Jacobucci[aut,cre],
Kevin J. Grimm [ctb],
Andreas M. Brandmaier [ctb],
Sarfaraz Serang [ctb],
Rogier A. Kievit [ctb],
Florian Scharf [ctb]
Maintainer: Ross Jacobucci <rcjacobuc@gmail.com>
Diff between regsem versions 1.3.3 dated 2019-03-18 and 1.3.8 dated 2019-05-07
DESCRIPTION | 6 ++--- MD5 | 28 +++++++++++++------------- R/RcppExports.R | 5 ++-- R/cv_regsem.R | 21 +++++++++++++++++-- R/multi_optim.R | 11 +++++++++- R/regsem.R | 47 +++++++++++++++++++++++++++++++++++++------- R/summary.cvregsem.R | 1 build/vignette.rds |binary inst/doc/short_intro.html | 26 ++++++++++++------------ man/cv_regsem.Rd | 30 ++++++++++++++++------------ man/multi_optim.Rd | 25 ++++++++++++++--------- man/rcpp_fit_fun.Rd | 4 ++- man/regsem.Rd | 27 ++++++++++++++----------- src/RcppExports.cpp | 9 ++++---- src/regsem_rcpp_fit_fun.cpp | 7 +++++- 15 files changed, 166 insertions(+), 81 deletions(-)
Title: Busy Indicator for 'Shiny' Applications
Description: Add a global indicator (spinner, progress bar, gif) in your 'shiny' applications to show the user that the server is busy.
Author: Fanny Meyer [aut],
Victor Perrier [aut, cre],
Silex Technologies [fnd] (https://www.silex-ip.com),
Tobias Ahlin [cph] (spin.css),
Chris Antonellis [cph] (freezeframe.js),
Jacobo Tabernero [cph] (nanobar.js)
Maintainer: Victor Perrier <victor.perrier@dreamrs.fr>
Diff between shinybusy versions 0.1.1 dated 2019-04-23 and 0.1.2 dated 2019-05-07
DESCRIPTION | 6 +++--- LICENSE | 3 --- MD5 | 16 ++++++++-------- NEWS.md | 6 ++++++ R/busy-bar.R | 4 ++-- R/busy-spinner.R | 4 +++- README.md | 11 +++++++++-- inst/assets/css/shinybusy.css | 4 ++-- inst/assets/js/shinybusy.js | 10 +++++++++- 9 files changed, 42 insertions(+), 22 deletions(-)
Title: Run 'R CMD check' from 'R' and Capture Results
Description: Run 'R CMD check' from 'R' and capture the
results of the individual checks. Supports running checks in the
background, timeouts, pretty printing and comparing check results.
Author: Gábor Csárdi
Maintainer: Gábor Csárdi <csardi.gabor@gmail.com>
Diff between rcmdcheck versions 1.3.2 dated 2018-11-10 and 1.3.3 dated 2019-05-07
rcmdcheck-1.3.2/rcmdcheck/inst |only rcmdcheck-1.3.2/rcmdcheck/tests/testthat/REDCapR-fail-ascii.log |only rcmdcheck-1.3.2/rcmdcheck/tests/testthat/REDCapR-ok-ascii.log |only rcmdcheck-1.3.2/rcmdcheck/tests/testthat/RSQLServer-install-ascii |only rcmdcheck-1.3.2/rcmdcheck/tests/testthat/bikedata-ok-ascii.log |only rcmdcheck-1.3.2/rcmdcheck/tests/testthat/comparison-newly-failing-ascii.txt |only rcmdcheck-1.3.2/rcmdcheck/tests/testthat/dataonderivatives-test-ascii |only rcmdcheck-1.3.2/rcmdcheck/tests/testthat/fixtures/test-error-ascii.txt |only rcmdcheck-1.3.2/rcmdcheck/tests/testthat/libpath-1-27382.out |only rcmdcheck-1.3.2/rcmdcheck/tests/testthat/libpath-2-27382.out |only rcmdcheck-1.3.2/rcmdcheck/tests/testthat/minimal-ee-ascii.log |only rcmdcheck-1.3.2/rcmdcheck/tests/testthat/minimal-ewn-ascii.log |only rcmdcheck-1.3.2/rcmdcheck/tests/testthat/minimal-ok-ascii.log |only rcmdcheck-1.3.2/rcmdcheck/tests/testthat/parse-install-fail-ascii.txt |only rcmdcheck-1.3.2/rcmdcheck/tests/testthat/parse-test-fail-ascii.txt |only rcmdcheck-1.3.3/rcmdcheck/DESCRIPTION | 19 - rcmdcheck-1.3.3/rcmdcheck/MD5 | 75 ++---- rcmdcheck-1.3.3/rcmdcheck/NAMESPACE | 1 rcmdcheck-1.3.3/rcmdcheck/NEWS.md |only rcmdcheck-1.3.3/rcmdcheck/R/build.R | 2 rcmdcheck-1.3.3/rcmdcheck/R/callback.R | 121 ++++++++-- rcmdcheck-1.3.3/rcmdcheck/R/compare.R | 9 rcmdcheck-1.3.3/rcmdcheck/R/comparison-summary.R | 6 rcmdcheck-1.3.3/rcmdcheck/R/comparison.R | 25 +- rcmdcheck-1.3.3/rcmdcheck/R/cran.R | 6 rcmdcheck-1.3.3/rcmdcheck/R/package.R | 5 rcmdcheck-1.3.3/rcmdcheck/R/parse.R | 54 ++++ rcmdcheck-1.3.3/rcmdcheck/R/print.R | 4 rcmdcheck-1.3.3/rcmdcheck/R/styles.R | 4 rcmdcheck-1.3.3/rcmdcheck/R/utils.R | 16 - rcmdcheck-1.3.3/rcmdcheck/README.md |only rcmdcheck-1.3.3/rcmdcheck/man/compare_checks.Rd | 10 rcmdcheck-1.3.3/rcmdcheck/man/cran_check_results.Rd | 5 rcmdcheck-1.3.3/rcmdcheck/tests/testthat/RSQLServer-install/00check.log | 8 rcmdcheck-1.3.3/rcmdcheck/tests/testthat/RSQLServer-install/00install.out | 8 rcmdcheck-1.3.3/rcmdcheck/tests/testthat/fixtures/bad-tests.tar.gz |only rcmdcheck-1.3.3/rcmdcheck/tests/testthat/fixtures/iso8859-15.rds |only rcmdcheck-1.3.3/rcmdcheck/tests/testthat/fixtures/win.rds |only rcmdcheck-1.3.3/rcmdcheck/tests/testthat/minimal-ee.log | 2 rcmdcheck-1.3.3/rcmdcheck/tests/testthat/minimal-ewn.log | 2 rcmdcheck-1.3.3/rcmdcheck/tests/testthat/minimal-ok.log | 1 rcmdcheck-1.3.3/rcmdcheck/tests/testthat/parse-install-fail.txt | 10 rcmdcheck-1.3.3/rcmdcheck/tests/testthat/test-comparison.R | 40 +-- rcmdcheck-1.3.3/rcmdcheck/tests/testthat/test-cran.R |only rcmdcheck-1.3.3/rcmdcheck/tests/testthat/test-parse.R | 56 +--- rcmdcheck-1.3.3/rcmdcheck/tests/testthat/test-rcmdcheck.R | 9 rcmdcheck-1.3.3/rcmdcheck/tests/testthat/test-tests.R |only 47 files changed, 311 insertions(+), 187 deletions(-)
Title: Modeling Over Dispersed Binomial Outcome Data Using BMD and ABD
Description: Contains Probability Mass Functions, Cumulative Mass Functions, Negative Log Likelihood value, parameter estimation and modeling data using Binomial Mixture Distributions (BMD) (Manoj et al (2013) <doi:10.5539/ijsp.v2n2p24>) and Alternate Binomial Distributions (ABD) (Paul (1985) <doi:10.1080/03610928508828990>).
Author: Amalan Mahendran [aut, cre] (<https://orcid.org/0000-0002-0643-9052>),
Pushpakanthie Wijekoon [aut, ctb]
(<https://orcid.org/0000-0003-4242-1017>)
Maintainer: Amalan Mahendran <amalan0595@gmail.com>
Diff between fitODBOD versions 1.2.0 dated 2018-09-15 and 1.3.0 dated 2019-05-07
DESCRIPTION | 20 + MD5 | 215 +++++++++++-------- NAMESPACE | 84 +++++++ R/AddBin.R | 242 ++++++++++++++++----- R/BMD_ABD.R |only R/Beta.R | 357 +++++++++++++++++++++----------- R/BetaCorrBin.R | 204 +++++++++++------- R/COMPBin.R | 183 ++++++++++------ R/CorrBin.R | 195 +++++++++++------ R/Data.R | 143 +++++++++--- R/GHGbeta.R | 267 ++++++++++++++--------- R/Gamma.R |only R/Gbeta1.R | 295 ++++++++++++++++---------- R/Kumaraswamy.R | 283 +++++++++++++++---------- R/LMultiBin.R |only R/MultiBin.R | 185 +++++++++++----- R/Overdispersion.R |only R/Triangle.R | 324 +++++++++++++++++++---------- R/Uniform.R | 64 +++-- R/ml.R |only data/Epidemic_Cold.rda |only man/Epidemic_Cold.Rd |only man/EstMGFBetaBin.Rd | 35 ++- man/EstMLEAddBin.Rd | 35 ++- man/EstMLEBetaBin.Rd | 20 - man/EstMLEBetaCorrBin.Rd | 15 - man/EstMLECOMPBin.Rd | 13 - man/EstMLECorrBin.Rd | 13 - man/EstMLEGHGBB.Rd | 19 - man/EstMLEGammaBin.Rd |only man/EstMLEGrassiaIIBin.Rd |only man/EstMLEKumBin.Rd | 18 - man/EstMLELMBin.Rd |only man/EstMLEMcGBB.Rd | 26 +- man/EstMLEMultiBin.Rd | 12 - man/EstMLETriBin.Rd | 39 ++- man/NegLLAddBin.Rd | 11 man/NegLLBetaBin.Rd | 20 - man/NegLLBetaCorrBin.Rd | 15 - man/NegLLCOMPBin.Rd | 13 - man/NegLLCorrBin.Rd | 13 - man/NegLLGHGBB.Rd | 14 - man/NegLLGammaBin.Rd |only man/NegLLGrassiaIIBin.Rd |only man/NegLLKumBin.Rd | 19 - man/NegLLLMBin.Rd |only man/NegLLMcGBB.Rd | 17 - man/NegLLMultiBin.Rd | 13 - man/NegLLTriBin.Rd | 17 - man/Overdispersion.Rd |only man/dAddBin.Rd | 18 - man/dBETA.Rd | 21 - man/dBetaBin.Rd | 25 +- man/dBetaCorrBin.Rd | 28 +- man/dCOMPBin.Rd | 21 - man/dCorrBin.Rd | 26 +- man/dGAMMA.Rd |only man/dGBeta1.Rd | 26 +- man/dGHGBB.Rd | 25 +- man/dGHGBeta.Rd | 24 +- man/dGammaBin.Rd |only man/dGrassiaIIBin.Rd |only man/dKUM.Rd | 24 +- man/dKumBin.Rd | 26 +- man/dLMBin.Rd |only man/dMcGBB.Rd | 28 +- man/dMultiBin.Rd | 22 + man/dTRI.Rd | 26 +- man/dTriBin.Rd | 23 +- man/dUNI.Rd | 18 - man/dUniBin.Rd | 13 - man/figures/logo.png |only man/fitAddBin.Rd | 59 +++-- man/fitBetaBin.Rd | 68 ++++-- man/fitBetaCorrBin.Rd | 63 +++-- man/fitBin.Rd | 34 +-- man/fitCOMPBin.Rd | 59 +++-- man/fitCorrBin.Rd | 61 +++-- man/fitGHGBB.Rd | 58 +++-- man/fitGammaBin.Rd |only man/fitGrassiaIIBin.Rd |only man/fitKumBin.Rd | 62 +++-- man/fitLMBin.Rd |only man/fitMcGBB.Rd | 65 +++-- man/fitMultiBin.Rd | 58 +++-- man/fitTriBin.Rd | 57 +++-- man/mazBETA.Rd | 15 - man/mazGAMMA.Rd |only man/mazGBeta1.Rd | 20 - man/mazGHGBeta.Rd | 18 - man/mazKUM.Rd | 19 - man/mazTRI.Rd | 22 - man/mazUNI.Rd | 8 man/pAddBin.Rd | 14 - man/pBETA.Rd | 15 - man/pBetaBin.Rd | 17 - man/pBetaCorrBin.Rd | 16 - man/pCOMPBin.Rd | 15 - man/pCorrBin.Rd | 17 - man/pGAMMA.Rd |only man/pGBeta1.Rd | 22 + man/pGHGBB.Rd | 19 - man/pGHGBeta.Rd | 18 - man/pGammaBin.Rd |only man/pGrassiaIIBin.Rd |only man/pKUM.Rd | 18 - man/pKumBin.Rd | 27 +- man/pLMBin.Rd |only man/pMcGBB.Rd | 22 + man/pMultiBin.Rd | 16 - man/pTRI.Rd | 22 - man/pTriBin.Rd | 11 man/pUNI.Rd | 12 - man/pUniBin.Rd | 9 tests/testthat/test-NegLLGammaBin.R |only tests/testthat/test-NegLLGrassiaIIBin.R |only tests/testthat/test-NegLLLMBin.R |only tests/testthat/test-dGAMMA.R |only tests/testthat/test-dGammaBin.R |only tests/testthat/test-dGrassiaIIBin.R |only tests/testthat/test-dLMBin.R |only tests/testthat/test-fitBin.R | 6 tests/testthat/test-fitGammaBin.R |only tests/testthat/test-fitGrassiaIIBin.R |only tests/testthat/test-fitLMBin.R |only tests/testthat/test-fitTriBin.R | 2 tests/testthat/test-mazGAMMA.R |only tests/testthat/test-pGAMMA.R |only 128 files changed, 3117 insertions(+), 1779 deletions(-)
Title: Domain-Specific Language for Building PLS Structural Equation
Models
Description: A powerful, easy to write and easy to modify syntax for
specifying and estimating Partial Least Squares (PLS) path models allowing for the latest estimation methods
for Consistent PLS as per Dijkstra & Henseler (2015, MISQ 39(2): 297-316), adjusted interactions as per
Henseler & Chin (2010) <doi:10.1080/10705510903439003> and bootstrapping utilizing
parallel processing as per Hair et al. (2017, ISBN:978-1483377445).
Author: Soumya Ray [aut, ths],
Nicholas Danks [aut, cre],
Juan Manuel Velasquez Estrada [aut]
Maintainer: Nicholas Danks <nicholasdanks@hotmail.com>
Diff between seminr versions 0.6.0 dated 2019-03-20 and 0.7.0 dated 2019-05-07
seminr-0.6.0/seminr/tests/fixtures/boostrapmatrix1.csv |only seminr-0.6.0/seminr/tests/fixtures/boostrapmatrix2.csv |only seminr-0.6.0/seminr/tests/fixtures/boot_HTMT.csv |only seminr-0.6.0/seminr/tests/fixtures/boot_loadings.csv |only seminr-0.6.0/seminr/tests/fixtures/boot_weights.csv |only seminr-0.6.0/seminr/tests/fixtures/coefficients.csv |only seminr-0.6.0/seminr/tests/fixtures/coefficients2.csv |only seminr-0.6.0/seminr/tests/fixtures/composite_collinearity.csv |only seminr-0.6.0/seminr/tests/fixtures/composite_indicator_reliability.csv |only seminr-0.6.0/seminr/tests/fixtures/composite_indicator_weights_p_values.csv |only seminr-0.6.0/seminr/tests/fixtures/composite_indicator_weights_t_values.csv |only seminr-0.6.0/seminr/tests/fixtures/conf_ints.csv |only seminr-0.6.0/seminr/tests/fixtures/constructscores.csv |only seminr-0.6.0/seminr/tests/fixtures/constructscores2.csv |only seminr-0.6.0/seminr/tests/fixtures/cross_loadings.csv |only seminr-0.6.0/seminr/tests/fixtures/factor_discriminant_validity.csv |only seminr-0.6.0/seminr/tests/fixtures/factor_discriminant_validity_p_values.csv |only seminr-0.6.0/seminr/tests/fixtures/factor_discriminant_validity_t_values.csv |only seminr-0.6.0/seminr/tests/fixtures/factor_indicator_reliability.csv |only seminr-0.6.0/seminr/tests/fixtures/factor_reliability.csv |only seminr-0.6.0/seminr/tests/fixtures/factorial_coefficients.csv |only seminr-0.6.0/seminr/tests/fixtures/factorial_scores.csv |only seminr-0.6.0/seminr/tests/fixtures/factorial_weights.csv |only seminr-0.6.0/seminr/tests/fixtures/htmt.csv |only seminr-0.6.0/seminr/tests/fixtures/inner_weights_coefficients.csv |only seminr-0.6.0/seminr/tests/fixtures/inner_weights_constructscores.csv |only seminr-0.6.0/seminr/tests/fixtures/inner_weights_weights.csv |only seminr-0.6.0/seminr/tests/fixtures/loadings1.csv |only seminr-0.6.0/seminr/tests/fixtures/loadings2.csv |only seminr-0.6.0/seminr/tests/fixtures/path_coef1.csv |only seminr-0.6.0/seminr/tests/fixtures/path_coef2.csv |only seminr-0.6.0/seminr/tests/fixtures/plsc-interaction-paths.csv |only seminr-0.6.0/seminr/tests/fixtures/plsc-interaction-reliability.csv |only seminr-0.6.0/seminr/tests/fixtures/pvalues.csv |only seminr-0.6.0/seminr/tests/fixtures/reliability.csv |only seminr-0.6.0/seminr/tests/fixtures/rho1.csv |only seminr-0.6.0/seminr/tests/fixtures/rho2.csv |only seminr-0.6.0/seminr/tests/fixtures/rsquared1.csv |only seminr-0.6.0/seminr/tests/fixtures/rsquaredplsc.csv |only seminr-0.6.0/seminr/tests/fixtures/tvalues.csv |only seminr-0.6.0/seminr/tests/fixtures/vifs |only seminr-0.6.0/seminr/tests/fixtures/weights.csv |only seminr-0.6.0/seminr/tests/fixtures/weights2.csv |only seminr-0.6.0/seminr/tests/testthat/test_validity.R |only seminr-0.7.0/seminr/DESCRIPTION | 8 seminr-0.7.0/seminr/MD5 | 177 ++++--- seminr-0.7.0/seminr/R/bootstrap.R | 4 seminr-0.7.0/seminr/R/consistent.R | 4 seminr-0.7.0/seminr/R/constructs.R | 2 seminr-0.7.0/seminr/R/library.R | 4 seminr-0.7.0/seminr/R/model.R | 2 seminr-0.7.0/seminr/R/reliability.R | 4 seminr-0.7.0/seminr/R/warnings.R | 15 seminr-0.7.0/seminr/build/vignette.rds |binary seminr-0.7.0/seminr/demo/00Index | 2 seminr-0.7.0/seminr/demo/seminr-alternative-models.R |only seminr-0.7.0/seminr/inst/doc/SEMinR.html | 245 ++++++++-- seminr-0.7.0/seminr/man/single_item.Rd | 2 seminr-0.7.0/seminr/tests/fixtures/V_3_5_X |only seminr-0.7.0/seminr/tests/fixtures/V_3_6_0 |only seminr-0.7.0/seminr/tests/testthat/helper-global.R |only seminr-0.7.0/seminr/tests/testthat/test-bootstrap.R | 32 - seminr-0.7.0/seminr/tests/testthat/test-consistent-interactions.R | 4 seminr-0.7.0/seminr/tests/testthat/test-consistent.R | 10 seminr-0.7.0/seminr/tests/testthat/test-inner_weighting.R | 14 seminr-0.7.0/seminr/tests/testthat/test-metric.R | 4 seminr-0.7.0/seminr/tests/testthat/test-output.r | 12 seminr-0.7.0/seminr/tests/testthat/test-summary.R | 58 +- seminr-0.7.0/seminr/tests/testthat/test-validity.R |only 69 files changed, 418 insertions(+), 185 deletions(-)
Title: Provide the 'x13ashtml' Seasonal Adjustment Binary
Description: The US Census Bureau provides a seasonal adjustment program now
called 'X-13ARIMA-SEATS' building on both earlier programs called X-11 and
X-12 as well as the SEATS program by the Bank of Spain. The US Census Bureau
offers both source and binary versions -- which this package integrates for
use by other R packages.
Author: Dirk Eddelbuettel and Christoph Sax
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between x13binary versions 1.1.39-1 dated 2017-05-04 and 1.1.39-2 dated 2019-05-07
ChangeLog | 6 ++++++ DESCRIPTION | 9 +++++---- MD5 | 4 ++-- 3 files changed, 13 insertions(+), 6 deletions(-)
Title: Capture Genomic Variation Signatures using Non-Negative Matrix
Factorization
Description: Contains functions for identification of
copy number signatures (Geoffrey et al. (2018) <doi:10.1038/s41588-018-0179-8>) and
mutation signatures (Alexandrov et al. (2013) <doi:10.1038/nature12477>)
by non-negative matrix factorization, signature analysis and visualization.
It can be used to capture signatures of genomic variation, compare genotype or
phenotype features of different signatures and thus uncover the relationship
between the mechanism of genomic variation and phenotypes in cancer.
Author: Shixiang Wang [aut, cre] (<https://orcid.org/0000-0001-9855-7357>),
Geoffrey Macintyre [ctb],
Xue-Song Liu [ctb]
Maintainer: Shixiang Wang <w_shixiang@163.com>
Diff between sigminer versions 0.1.9 dated 2019-04-25 and 0.1.11 dated 2019-05-07
DESCRIPTION | 10 +++++----- MD5 | 34 +++++++++++++++++----------------- NEWS.md | 9 +++++++++ R/cnv_helper.R | 6 +++--- R/draw_series.R | 6 ++++-- R/sigminer.R | 2 +- R/signature_series.R | 20 +++++++++----------- README.md | 12 +++++++++++- build/partial.rdb |binary inst/doc/sigminer.R | 12 ++++++------ inst/doc/sigminer.Rmd | 6 +++--- inst/doc/sigminer.html | 13 ++++--------- inst/test/test.R | 2 ++ man/sig_estimate.Rd | 3 +++ man/sig_extract.Rd | 5 +++++ man/sig_prepare.Rd | 3 +++ man/sigminer.Rd | 2 +- vignettes/sigminer.Rmd | 6 +++--- 18 files changed, 89 insertions(+), 62 deletions(-)
Title: Similarity-First Search Seriation Algorithm
Description: An implementation of the Similarity-First Search algorithm (SFS), a combinatorial algorithm which can be used to solve the seriation problem and to recognize some structured weighted graphs. The SFS algorithm represents a generalization to weighted graphs of the graph search algorithm Lexicographic Breadth-First Search (Lex-BFS), a variant of Breadth-First Search. The SFS algorithm reduces to Lex-BFS when applied to binary matrices (or, equivalently, unweighted graphs). Hence this library can be also considered for Lex-BFS applications such as recognition of graph classes like chordal or unit interval graphs. In fact, the SFS seriation algorithm implemented in this package is a multisweep algorithm, which consists in repeating a finite number of SFS iterations (at most n sweeps for a matrix of size n). If the data matrix has a Robinsonian structure, then the ranking returned by the multistep SFS algorithm is a Robinson ordering of the input matrix. Otherwise the algorithm can be used as a heuristic to return a ranking partially satisfying the Robinson property.
Author: Matteo Seminaroti [aut, cph],
Utz-Uwe Haus [aut, cre, cph],
Monique Laurent [ctb]
Maintainer: Utz-Uwe Haus <uhaus@cray.com>
Diff between SFS versions 0.1.2 dated 2017-07-10 and 0.1.4 dated 2019-05-07
DESCRIPTION | 12 ++++++------ MD5 | 12 ++++++------ R/RcppExports.R | 4 ++-- inst/CITATION | 27 ++++++++++++++++++++------- man/SFS_sfs.Rd | 1 + src/RcppExports.cpp | 8 ++++---- src/SFSMatrix.cpp | 4 ++-- 7 files changed, 41 insertions(+), 27 deletions(-)
Title: Joint Analysis and Imputation of Incomplete Data
Description: Provides joint analysis and imputation of (generalized)
linear and cumulative logit regression models, (generalized) linear and
cumulative logit mixed models and parametric (Weibull) as well as Cox
proportional hazards survival models with incomplete (covariate) data in
the Bayesian framework.
The package performs some preprocessing of the data and creates a 'JAGS'
model, which will then automatically be passed to 'JAGS'
<http://mcmc-jags.sourceforge.net> with the help of
the package 'rjags'.
It also provides summary and plotting functions for the output and allows
to export imputed values.
Author: Nicole S. Erler [aut, cre] (<https://orcid.org/0000-0002-9370-6832>)
Maintainer: Nicole S. Erler <n.erler@erasmusmc.nl>
Diff between JointAI versions 0.5.0 dated 2019-03-08 and 0.5.1 dated 2019-05-07
DESCRIPTION | 8 MD5 | 91 ++-- NEWS.md | 26 + R/add_samples.R | 5 R/analysismodel_surv.R | 4 R/convergence_criteria.R | 8 R/divide_matrices.R | 9 R/get_coef_names.R | 2 R/get_data_list.R | 16 R/get_params.R | 8 R/get_subset.R | 8 R/helpfunctions_JAGS.R | 8 R/helpfunctions_summary.R | 7 R/model_imp.R | 11 R/plot_imp_distr.R | 2 R/plots.R | 14 R/predict.R | 5 R/scaling.R | 9 R/simLong.R | 20 R/summary.JointAI.R | 20 build/vignette.rds |binary data/simLong.RData |binary data/simWide.RData |binary inst/doc/AfterFitting.R | 24 - inst/doc/AfterFitting.Rmd | 50 +- inst/doc/AfterFitting.html | 537 ++++++++++++------------ inst/doc/MCMCsettings.R | 35 + inst/doc/MCMCsettings.Rmd | 62 +- inst/doc/MCMCsettings.html | 480 +++++++++++----------- inst/doc/MinimalExample.html | 93 ++-- inst/doc/ModelSpecification.Rmd | 4 inst/doc/ModelSpecification.html | 674 +++++++++++++++---------------- inst/doc/SelectingParameters.html | 511 +++++++++++------------ inst/doc/VisualizingIncompleteData.html | 73 +-- man/GR_crit.Rd | 7 man/MC_error.Rd | 6 man/densplot.Rd | 6 man/figures/README-unnamed-chunk-4-1.png |binary man/figures/README-unnamed-chunk-5-1.png |binary man/plot_imp_distr.Rd | 2 man/predict.JointAI.Rd | 6 man/simLong.Rd | 20 man/traceplot.Rd | 6 tests/testthat/test_bugfixes.R |only vignettes/AfterFitting.Rmd | 50 +- vignettes/MCMCsettings.Rmd | 62 +- vignettes/ModelSpecification.Rmd | 4 47 files changed, 1585 insertions(+), 1408 deletions(-)
Title: Comorbidity Calculations and Tools for ICD-9 and ICD-10 Codes
Description: Calculate comorbidities, medical risk scores, and
work very quickly and precisely with ICD-9 and ICD-10 codes. This
package enables a work flow from raw tables of ICD codes in hospital
databases to comorbidities. ICD-9 and ICD-10 comorbidity mappings from
Quan (Deyo and Elixhauser versions), Elixhauser and AHRQ included.
Common ambiguities and code formats are handled. Comorbidity
computation includes Hierarchical Condition Codes, and an
implementation of AHRQ Clinical Classifications. Risk
scores include those of Charlson and van Walraven. US Clinical
Modification, Word Health Organization, Belgian and French ICD-10
codes are supported, most of which are downloaded on demand.
Author: Jack O. Wasey [aut, cre, cph] (<https://orcid.org/0000-0003-3738-4637>),
William Murphy [ctb] (Van Walraven scores),
Anobel Odisho [ctb] (CMS Hierarchical Condition Codes),
Vitaly Druker [ctb] (AHRQ CCS),
Ed Lee [ctb] (explain codes in table format),
R Core Team [aut, cph] (utils::askYesNo backport and m4 script for
OpenMP detection.)
Maintainer: Jack O. Wasey <jack@jackwasey.com>
Diff between icd versions 3.3 dated 2018-11-18 and 4.0.6 dated 2019-05-07
icd-3.3/icd/R/catch-routine-registration.R |only icd-3.3/icd/R/generate_sysdata.R |only icd-3.3/icd/R/save_in_data_dir.R |only icd-3.3/icd/R/unzip_single.R |only icd-3.3/icd/R/z-deprecated.R |only icd-3.3/icd/data/icd10_map_ahrq.RData |only icd-3.3/icd/data/icd10_map_ahrq_pcs.RData |only icd-3.3/icd/data/icd10_map_cc.RData |only icd-3.3/icd/data/icd10_map_ccs.RData |only icd-3.3/icd/data/icd10_map_charlson.RData |only icd-3.3/icd/data/icd10_map_elix.RData |only icd-3.3/icd/data/icd10_map_pccc_dx.RData |only icd-3.3/icd/data/icd10_map_pccc_pcs.RData |only icd-3.3/icd/data/icd10_map_quan_deyo.RData |only icd-3.3/icd/data/icd10_map_quan_elix.RData |only icd-3.3/icd/data/icd10_sources.RData |only icd-3.3/icd/data/icd9_map_ahrq.RData |only icd-3.3/icd/data/icd9_map_cc.RData |only icd-3.3/icd/data/icd9_map_charlson.RData |only icd-3.3/icd/data/icd9_map_elix.RData |only icd-3.3/icd/data/icd9_map_multi_ccs.RData |only icd-3.3/icd/data/icd9_map_pccc_dx.RData |only icd-3.3/icd/data/icd9_map_pccc_pcs.RData |only icd-3.3/icd/data/icd9_map_quan_deyo.RData |only icd-3.3/icd/data/icd9_map_quan_elix.RData |only icd-3.3/icd/data/icd9_map_single_ccs.RData |only icd-3.3/icd/data/icd9_sources.RData |only icd-3.3/icd/data/icd_map_cc_hcc.RData |only icd-3.3/icd/inst/doc/efficiency.R |only icd-3.3/icd/inst/doc/efficiency.Rmd |only icd-3.3/icd/man/all_identical.Rd |only icd-3.3/icd/man/as_char_no_warn.Rd |only icd-3.3/icd/man/categorize_simple.Rd |only icd-3.3/icd/man/chapter_to_desc_range.Rd |only icd-3.3/icd/man/children_defined.Rd |only icd-3.3/icd/man/classes_ordered.Rd |only icd-3.3/icd/man/comorbidMatMulSimple.Rd |only icd-3.3/icd/man/comorbid_hcc_worker.Rd |only icd-3.3/icd/man/condense_explain_table.Rd |only icd-3.3/icd/man/condense_explain_table_worker.Rd |only icd-3.3/icd/man/decimal_to_parts.Rd |only icd-3.3/icd/man/do_extra_tests.Rd |only icd-3.3/icd/man/env_to_vec_flip.Rd |only icd-3.3/icd/man/expand_minor.Rd |only icd-3.3/icd/man/expect_chap_equal.Rd |only icd-3.3/icd/man/expect_chap_present.Rd |only icd-3.3/icd/man/expect_equal_no_icd.Rd |only icd-3.3/icd/man/factor_nosort.Rd |only icd-3.3/icd/man/fastIntToStringRcpp.Rd |only icd-3.3/icd/man/fetch_icd10cm_all.Rd |only icd-3.3/icd/man/fixSubchapterNa.Rd |only icd-3.3/icd/man/generate_icd10_sources.Rd |only icd-3.3/icd/man/generate_icd_chapters.Rd |only icd-3.3/icd/man/generate_maps_pccc.Rd |only icd-3.3/icd/man/generate_random_short_icd10cm_bill.Rd |only icd-3.3/icd/man/generate_random_short_icd9.Rd |only icd-3.3/icd/man/generate_spelling.Rd |only icd-3.3/icd/man/generate_sysdata.Rd |only icd-3.3/icd/man/get_icd_name.Rd |only icd-3.3/icd/man/get_major.Rd |only icd-3.3/icd/man/get_non_ASCII.Rd |only icd-3.3/icd/man/get_raw_data_dir.Rd |only icd-3.3/icd/man/get_visit_name.Rd |only icd-3.3/icd/man/grapes-eine-grapes.Rd |only icd-3.3/icd/man/guess_pair_version.Rd |only icd-3.3/icd/man/guess_version_update.Rd |only icd-3.3/icd/man/icd10_fetch_ahrq_ccs.Rd |only icd-3.3/icd/man/icd10_generate_map_quan_deyo.Rd |only icd-3.3/icd/man/icd10_generate_map_quan_elix.Rd |only icd-3.3/icd/man/icd10_parse_ahrq_ccs.Rd |only icd-3.3/icd/man/icd10_parse_cc.Rd |only icd-3.3/icd/man/icd10_pcs.Rd |only icd-3.3/icd/man/icd10cm2016.Rd |only icd-3.3/icd/man/icd10cm_extract_sub_chapters.Rd |only icd-3.3/icd/man/icd10cm_get_all_defined.Rd |only icd-3.3/icd/man/icd9AddLeadingZeroesMajorSingle.Rd |only icd-3.3/icd/man/icd9_add_leading_zeroes_cpp.Rd |only icd-3.3/icd/man/icd9_chapters_to_map.Rd |only icd-3.3/icd/man/icd9_drop_leading_zeroes.Rd |only icd-3.3/icd/man/icd9_expand_range_worker.Rd |only icd-3.3/icd/man/icd9_extract_alpha_numeric.Rd |only icd-3.3/icd/man/icd9_fetch_ahrq_ccs.Rd |only icd-3.3/icd/man/icd9_fetch_ahrq_sas.Rd |only icd-3.3/icd/man/icd9_generate_all_.Rd |only icd-3.3/icd/man/icd9_generate_map_elix.Rd |only icd-3.3/icd/man/icd9_generate_map_quan_elix.Rd |only icd-3.3/icd/man/icd9_generate_sources.Rd 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icd-4.0.6/icd/man/icd9_map_pccc.Rd | 2 icd-4.0.6/icd/man/icd9_map_quan_deyo.Rd | 2 icd-4.0.6/icd/man/icd9_map_quan_elix.Rd | 2 icd-4.0.6/icd/man/icd9_map_single_ccs.Rd | 2 icd-4.0.6/icd/man/icd9_sub_chapters.Rd |only icd-4.0.6/icd/man/icd9cm2014_leaf.Rd |only icd-4.0.6/icd/man/icd9cm_billable.Rd | 34 icd-4.0.6/icd/man/icd9cm_hierarchy.Rd | 45 icd-4.0.6/icd/man/is.icd9.Rd | 51 icd-4.0.6/icd/man/is.icd_long_data.Rd |only icd-4.0.6/icd/man/is_billable.Rd | 85 icd-4.0.6/icd/man/is_defined.Rd | 44 icd-4.0.6/icd/man/is_leaf.Rd |only icd-4.0.6/icd/man/is_valid.Rd | 63 icd-4.0.6/icd/man/long_to_wide.Rd | 74 icd-4.0.6/icd/man/names_elix.Rd | 7 icd-4.0.6/icd/man/plot_comorbid.Rd |only icd-4.0.6/icd/man/poa_choices.Rd | 19 icd-4.0.6/icd/man/print.comorbidity_map.Rd | 4 icd-4.0.6/icd/man/print.icd9.Rd | 14 icd-4.0.6/icd/man/set_icd10cm_active_year.Rd |only icd-4.0.6/icd/man/set_icd_class.Rd | 89 icd-4.0.6/icd/man/set_icd_data_dir.Rd |only icd-4.0.6/icd/man/short_to_decimal.Rd | 44 icd-4.0.6/icd/man/sort_icd.Rd | 116 icd-4.0.6/icd/man/sub-sub-.comorbidity_map.Rd | 1 icd-4.0.6/icd/man/subset.Rd |only icd-4.0.6/icd/man/uranium_pathology.Rd | 10 icd-4.0.6/icd/man/van_walraven.Rd | 34 icd-4.0.6/icd/man/vermont_dx.Rd | 13 icd-4.0.6/icd/man/wide_to_long.Rd | 62 icd-4.0.6/icd/man/wide_vs_long.Rd |only icd-4.0.6/icd/man/with_icd10cm_version.Rd |only icd-4.0.6/icd/src/Makevars.in |only icd-4.0.6/icd/src/Makevars.win | 2 icd-4.0.6/icd/src/RcppExports-003763eb.o.tmp |only icd-4.0.6/icd/src/RcppExports-54b93fe8.o.tmp |only icd-4.0.6/icd/src/RcppExports.cpp | 547 ++- icd-4.0.6/icd/src/appendMinor-ac0aaa53.o.tmp |only icd-4.0.6/icd/src/appendMinor.cpp | 111 icd-4.0.6/icd/src/appendMinor.h | 41 icd-4.0.6/icd/src/attr-623b556f.o.tmp |only icd-4.0.6/icd/src/attr.cpp | 43 icd-4.0.6/icd/src/attr.h | 25 icd-4.0.6/icd/src/categorize-4b1ce4ae.o.tmp |only icd-4.0.6/icd/src/categorize-d0910e94.o.tmp |only icd-4.0.6/icd/src/categorize.cpp | 31 icd-4.0.6/icd/src/children-b8aee16e.o.tmp |only icd-4.0.6/icd/src/children.cpp | 75 icd-4.0.6/icd/src/comorbidIcd10-5ec85162.o.tmp |only icd-4.0.6/icd/src/comorbidIcd10.cpp | 57 icd-4.0.6/icd/src/comorbidMatMul-e5b368cc.o.tmp |only icd-4.0.6/icd/src/comorbidMatMul.cpp | 313 -- icd-4.0.6/icd/src/comorbidMatMul.h |only icd-4.0.6/icd/src/convert-3d230592.o.tmp |only icd-4.0.6/icd/src/convert.cpp | 233 - icd-4.0.6/icd/src/convert.h | 34 icd-4.0.6/icd/src/convert10-78b87041.o.tmp |only icd-4.0.6/icd/src/convert10-cfb7f6a8.o.tmp |only icd-4.0.6/icd/src/convert10.cpp |only icd-4.0.6/icd/src/convert10.h |only icd-4.0.6/icd/src/cutil.c | 4 icd-4.0.6/icd/src/cutil.h | 17 icd-4.0.6/icd/src/fastIntToString-e318a1cc.o.tmp |only icd-4.0.6/icd/src/fastIntToString.cpp | 19 icd-4.0.6/icd/src/guess-8276b661.o.tmp |only icd-4.0.6/icd/src/guess.cpp | 73 icd-4.0.6/icd/src/icd_types.h | 30 icd-4.0.6/icd/src/is-dd5000f3.o.tmp |only icd-4.0.6/icd/src/is.cpp | 60 icd-4.0.6/icd/src/is.h | 31 icd-4.0.6/icd/src/local.h | 88 icd-4.0.6/icd/src/makevars.h.win |only icd-4.0.6/icd/src/makevars.h.win64 |only icd-4.0.6/icd/src/manip.cpp | 59 icd-4.0.6/icd/src/manip.h | 17 icd-4.0.6/icd/src/mapplus.cpp |only icd-4.0.6/icd/src/mapplus.h |only icd-4.0.6/icd/src/range-const.h | 53 icd-4.0.6/icd/src/ranges.cpp | 276 + icd-4.0.6/icd/src/ranges.h | 45 icd-4.0.6/icd/src/refactor.cpp | 324 +- icd-4.0.6/icd/src/refactor.h | 34 icd-4.0.6/icd/src/relevant.cpp |only icd-4.0.6/icd/src/relevant.h |only icd-4.0.6/icd/src/sort.cpp |only icd-4.0.6/icd/src/sort.h |only icd-4.0.6/icd/src/test-cpp-matmul.cpp |only icd-4.0.6/icd/src/test-cpp.cpp | 355 +- icd-4.0.6/icd/src/test-runner.cpp | 2 icd-4.0.6/icd/src/util.cpp | 179 - icd-4.0.6/icd/src/util.h | 40 icd-4.0.6/icd/tests/testthat.R |only icd-4.0.6/icd/tests/testthat/Rplots.pdf |only icd-4.0.6/icd/tests/testthat/helper-base.R | 233 + icd-4.0.6/icd/tests/testthat/helper-icd-data.R |only icd-4.0.6/icd/tests/testthat/helper-icd10.R | 63 icd-4.0.6/icd/tests/testthat/test-attr.R | 15 icd-4.0.6/icd/tests/testthat/test-build-maps-icd10.R |only icd-4.0.6/icd/tests/testthat/test-build-maps-icd9.R |only icd-4.0.6/icd/tests/testthat/test-build-sysdata.R |only icd-4.0.6/icd/tests/testthat/test-categorize.R | 94 icd-4.0.6/icd/tests/testthat/test-ccs-calcs.R | 100 icd-4.0.6/icd/tests/testthat/test-chapters-to-map.R |only icd-4.0.6/icd/tests/testthat/test-chapters.R |only icd-4.0.6/icd/tests/testthat/test-children-icd10.R | 141 icd-4.0.6/icd/tests/testthat/test-class.R | 232 + icd-4.0.6/icd/tests/testthat/test-comorbid-calcs-icd10.R | 181 - icd-4.0.6/icd/tests/testthat/test-comorbid-calcs-icd9.R | 468 ++- icd-4.0.6/icd/tests/testthat/test-comorbid-maps-icd10.R | 240 - icd-4.0.6/icd/tests/testthat/test-comorbid-maps-icd9.R | 178 - icd-4.0.6/icd/tests/testthat/test-comorbid-wide.R |only icd-4.0.6/icd/tests/testthat/test-condense.R | 436 +- icd-4.0.6/icd/tests/testthat/test-convert.R | 239 - icd-4.0.6/icd/tests/testthat/test-data-fun.R |only icd-4.0.6/icd/tests/testthat/test-data-sanity.R |only icd-4.0.6/icd/tests/testthat/test-examples.R | 19 icd-4.0.6/icd/tests/testthat/test-explain-fr.R |only icd-4.0.6/icd/tests/testthat/test-explain-icd10.R |only icd-4.0.6/icd/tests/testthat/test-explain-table.R | 140 icd-4.0.6/icd/tests/testthat/test-explain-who.R |only icd-4.0.6/icd/tests/testthat/test-explain.R | 262 - icd-4.0.6/icd/tests/testthat/test-factor.R | 6 icd-4.0.6/icd/tests/testthat/test-filter-icd10.R | 19 icd-4.0.6/icd/tests/testthat/test-filter-poa.R | 166 - icd-4.0.6/icd/tests/testthat/test-github133.R | 17 icd-4.0.6/icd/tests/testthat/test-guess.R | 39 icd-4.0.6/icd/tests/testthat/test-hcc.R | 85 icd-4.0.6/icd/tests/testthat/test-hierarchy.R | 144 icd-4.0.6/icd/tests/testthat/test-icd10be.R |only icd-4.0.6/icd/tests/testthat/test-icd10cm-ver.R |only icd-4.0.6/icd/tests/testthat/test-icd10cm-xml-chapters.R |only icd-4.0.6/icd/tests/testthat/test-is.R | 63 icd-4.0.6/icd/tests/testthat/test-longtowide.R | 64 icd-4.0.6/icd/tests/testthat/test-manip.R | 154 - icd-4.0.6/icd/tests/testthat/test-parse-icd10.R |only icd-4.0.6/icd/tests/testthat/test-parse-icd9.R |only icd-4.0.6/icd/tests/testthat/test-parse.R |only icd-4.0.6/icd/tests/testthat/test-pccc.R | 72 icd-4.0.6/icd/tests/testthat/test-ranges-icd10.R | 85 icd-4.0.6/icd/tests/testthat/test-ranges.R | 652 ++-- icd-4.0.6/icd/tests/testthat/test-refactor-slow.R |only icd-4.0.6/icd/tests/testthat/test-refactor.R | 433 ++ icd-4.0.6/icd/tests/testthat/test-reshape.R | 102 icd-4.0.6/icd/tests/testthat/test-sample-data.R | 69 icd-4.0.6/icd/tests/testthat/test-sas.R |only icd-4.0.6/icd/tests/testthat/test-score.R | 454 +-- icd-4.0.6/icd/tests/testthat/test-sort.R | 140 icd-4.0.6/icd/tests/testthat/test-spell.R | 23 icd-4.0.6/icd/tests/testthat/test-util-icd-data.R |only icd-4.0.6/icd/tests/testthat/test-util.R | 181 - icd-4.0.6/icd/tests/testthat/test-valid-icd10.R | 47 icd-4.0.6/icd/tests/testthat/test-valid.R | 179 - icd-4.0.6/icd/tests/testthat/test-who.R |only icd-4.0.6/icd/vignettes/CMS-HCC.Rmd | 8 icd-4.0.6/icd/vignettes/ICD-10.Rmd | 56 icd-4.0.6/icd/vignettes/PCCC.Rmd | 90 icd-4.0.6/icd/vignettes/charlson-scores.Rmd | 22 icd-4.0.6/icd/vignettes/compare-maps.Rmd | 12 icd-4.0.6/icd/vignettes/country-lang-vers-prebuilt.pdf |only icd-4.0.6/icd/vignettes/country-lang-vers.Rnw |only icd-4.0.6/icd/vignettes/custom-maps.Rmd |only icd-4.0.6/icd/vignettes/efficiency-prebuilt.pdf |only icd-4.0.6/icd/vignettes/efficiency.Rnw |only icd-4.0.6/icd/vignettes/icd.bib |only icd-4.0.6/icd/vignettes/icdpkg.bib | 3 icd-4.0.6/icd/vignettes/introduction.Rmd | 86 icd-4.0.6/icd/vignettes/ranges.Rmd | 16 545 files changed, 17284 insertions(+), 13804 deletions(-)
Title: Automatically Position Non-Overlapping Text Labels with
'ggplot2'
Description: Provides text and label geoms for 'ggplot2' that help to avoid
overlapping text labels. Labels repel away from each other and away from the
data points.
Author: Kamil Slowikowski [aut, cre] (<https://orcid.org/0000-0002-2843-6370>),
Alicia Schep [ctb] (<https://orcid.org/0000-0002-3915-0618>),
Sean Hughes [ctb],
Saulius Lukauskas [ctb],
Jean-Olivier Irisson [ctb] (<https://orcid.org/0000-0003-4920-3880>),
Zhian N Kamvar [ctb] (<https://orcid.org/0000-0003-1458-7108>),
Thompson Ryan [ctb] (<https://orcid.org/0000-0002-0450-8181>),
Dervieux Christophe [ctb] (<https://orcid.org/0000-0003-4474-2498>),
Yutani Hiroaki [ctb],
Pierre Gramme [ctb]
Maintainer: Kamil Slowikowski <kslowikowski@gmail.com>
Diff between ggrepel versions 0.8.0 dated 2018-05-09 and 0.8.1 dated 2019-05-07
DESCRIPTION | 7 - MD5 | 14 +- NEWS.md | 2 README.md | 18 ++- build/vignette.rds |binary inst/doc/ggrepel.R | 241 ++++++++++++++++++++++++++++++++++++++++++++++++++ inst/doc/ggrepel.html | 57 ++++++----- src/repel_boxes.cpp | 6 - 8 files changed, 299 insertions(+), 46 deletions(-)