Title: Simulation and Prediction with Seasonal ARIMA Models
Description: Functions, classes and methods for time series modelling with ARIMA
and related models. The aim of the package is to provide consistent
interface for the user. For example, a single function autocorrelations()
computes various kinds of theoretical and sample autocorrelations. This is
work in progress, see the documentation and vignettes for the current
functionality. Function sarima() fits extended multiplicative seasonal
ARIMA models with trends, exogenous variables and arbitrary roots on the
unit circle, which can be fixed or estimated.
Author: Georgi N. Boshnakov [aut, cre],
Jamie Halliday [aut]
Maintainer: Georgi N. Boshnakov <georgi.boshnakov@manchester.ac.uk>
Diff between sarima versions 0.8.0 dated 2019-04-13 and 0.8.1 dated 2019-05-12
sarima-0.8.0/sarima/inst/auto |only sarima-0.8.1/sarima/DESCRIPTION | 8 +- sarima-0.8.1/sarima/MD5 | 17 ++-- sarima-0.8.1/sarima/NEWS.md | 8 +- sarima-0.8.1/sarima/build/partial.rdb |binary sarima-0.8.1/sarima/build/vignette.rds |binary sarima-0.8.1/sarima/inst/doc/garch_tests_example.pdf |binary sarima-0.8.1/sarima/inst/doc/white_noise_tests.pdf |binary sarima-0.8.1/sarima/tests/testthat/test-css.R | 38 ++++++++-- sarima-0.8.1/sarima/tests/testthat/test-symm.R | 71 +++++++++++++++++-- 10 files changed, 115 insertions(+), 27 deletions(-)
Title: Hierarchical Bayesian Species Distribution Models
Description: User-friendly and fast set of functions for estimating parameters of hierarchical Bayesian species distribution models (Latimer et al. 2006 <doi:10.1890/04-0609>). Such models allow interpreting the observations (occurrence and abundance of a species) as a result of several hierarchical processes including ecological processes (habitat suitability, spatial dependence and anthropogenic disturbance) and observation processes (species detectability). Hierarchical species distribution models are essential for accurately characterizing the environmental response of species, predicting their probability of occurrence, and assessing uncertainty in the model results.
Author: Ghislain Vieilledent [aut, cre]
(<https://orcid.org/0000-0002-1685-4997>),
Matthieu Autier [ctb],
Alan E. Gelfand [ctb],
Jérôme Guélat [ctb],
Marc Kéry [ctb],
Andrew M. Latimer [ctb],
Cory Merow [ctb],
Frédéric Mortier [ctb],
John A. Silander Jr. [ctb],
Adam M. Wilson [ctb],
Shanshan Wu [ctb],
CIRAD [cph, fnd]
Maintainer: Ghislain Vieilledent <ghislain.vieilledent@cirad.fr>
Diff between hSDM versions 1.4 dated 2014-07-02 and 1.4.1 dated 2019-05-12
hSDM-1.4.1/hSDM/DESCRIPTION | 50 hSDM-1.4.1/hSDM/LICENSE | 701 ++++++++++ hSDM-1.4.1/hSDM/MD5 | 95 - hSDM-1.4.1/hSDM/NAMESPACE | 5 hSDM-1.4.1/hSDM/R/hSDM.Nmixture.K.R |only hSDM-1.4.1/hSDM/R/hSDM.Nmixture.iCAR.R | 1 hSDM-1.4.1/hSDM/R/hSDM.ZIB.iCAR.R | 98 - hSDM-1.4.1/hSDM/R/hSDM.ZIB.iCAR.alteration.R | 1 hSDM-1.4.1/hSDM/R/hSDM.ZIP.iCAR.R | 3 hSDM-1.4.1/hSDM/R/hSDM.ZIP.iCAR.alteration.R | 3 hSDM-1.4.1/hSDM/R/hSDM.binomial.R | 6 hSDM-1.4.1/hSDM/R/hSDM.binomial.iCAR.R | 1 hSDM-1.4.1/hSDM/R/hSDM.poisson.iCAR.R | 1 hSDM-1.4.1/hSDM/R/hSDM.siteocc.iCAR.R | 1 hSDM-1.4.1/hSDM/R/hidden.R | 79 - hSDM-1.4.1/hSDM/README.md | 109 - hSDM-1.4.1/hSDM/build |only hSDM-1.4.1/hSDM/data/frogs.rda |only hSDM-1.4.1/hSDM/inst |only hSDM-1.4.1/hSDM/man/figures |only hSDM-1.4.1/hSDM/man/frogs.Rd |only hSDM-1.4.1/hSDM/man/hSDM.Nmixture.K.Rd |only hSDM-1.4.1/hSDM/src/Makevars |only hSDM-1.4.1/hSDM/src/Makevars.win |only hSDM-1.4.1/hSDM/src/hSDM.Nmixture.K.c |only hSDM-1.4.1/hSDM/src/hSDM.Nmixture.c | 1158 ++++++++--------- hSDM-1.4.1/hSDM/src/hSDM.Nmixture.iCAR.c | 1670 ++++++++++++------------- hSDM-1.4.1/hSDM/src/hSDM.ZIB.c | 864 ++++++------ hSDM-1.4.1/hSDM/src/hSDM.ZIB.iCAR.alteration.c | 1404 ++++++++++----------- hSDM-1.4.1/hSDM/src/hSDM.ZIB.iCAR.c | 1380 ++++++++++---------- hSDM-1.4.1/hSDM/src/hSDM.ZIP.c | 850 ++++++------ hSDM-1.4.1/hSDM/src/hSDM.ZIP.iCAR.alteration.c | 1386 ++++++++++---------- hSDM-1.4.1/hSDM/src/hSDM.ZIP.iCAR.c | 1366 ++++++++++---------- hSDM-1.4.1/hSDM/src/hSDM.binomial.c | 563 ++++---- hSDM-1.4.1/hSDM/src/hSDM.binomial.iCAR.c | 1068 ++++++++------- hSDM-1.4.1/hSDM/src/hSDM.poisson.c | 550 ++++---- hSDM-1.4.1/hSDM/src/hSDM.poisson.iCAR.c | 1054 +++++++-------- hSDM-1.4.1/hSDM/src/hSDM.siteocc.c | 1100 ++++++++-------- hSDM-1.4.1/hSDM/src/hSDM.siteocc.iCAR.c | 1662 ++++++++++++------------ hSDM-1.4.1/hSDM/src/hSDM_init.c |only hSDM-1.4.1/hSDM/src/useful.c | 229 +-- hSDM-1.4.1/hSDM/src/useful.h | 7 hSDM-1.4.1/hSDM/vignettes |only hSDM-1.4/hSDM/COPYING |only 44 files changed, 9113 insertions(+), 8352 deletions(-)
Title: Interface to 'Azure Resource Manager'
Description: A lightweight but powerful R interface to the 'Azure Resource Manager' REST API. The package exposes classes and methods for 'OAuth' authentication and working with subscriptions and resource groups. It also provides functionality for creating and deleting 'Azure' resources and deploying templates. While 'AzureRMR' can be used to manage any 'Azure' service, it can also be extended by other packages to provide extra functionality for specific services.
Author: Hong Ooi [aut, cre],
Microsoft [cph]
Maintainer: Hong Ooi <hongooi@microsoft.com>
Diff between AzureRMR versions 2.1.0 dated 2019-04-02 and 2.1.1 dated 2019-05-12
DESCRIPTION | 6 +-- MD5 | 18 +++++----- NEWS.md | 5 ++ R/az_login.R | 75 +++++++++++++++++++++++-------------------- R/az_rm.R | 36 +++++++++----------- R/az_subscription.R | 23 ++++++++----- man/az_rm.Rd | 3 + man/az_subscription.Rd | 2 - man/azure_login.Rd | 16 +++++---- tests/testthat/test01_auth.R | 14 +++++--- 10 files changed, 110 insertions(+), 88 deletions(-)
Title: Global Sensitivity Analysis in Physiologically Based Kinetic
Modeling
Description: Applying the global sensitivity analysis workflow to investigate the parameter uncertainty and sensitivity in pharmacokinetic (PK) models, especially the physiologically-based pharmacokinetic (PBPK) model with multivariate outputs. The package also provide some functions to check the sensitivity measures and its convergence of model parameters.
Author: Nan-Hung Hsieh [aut, cre] (<https://orcid.org/0000-0003-0163-2766>),
Brad Reisfeld [aut],
Weihsueh A. Chiu [aut] (<https://orcid.org/0000-0002-7575-2368>)
Maintainer: Nan-Hung Hsieh <nhsieh@cvm.tamu.edu>
Diff between pksensi versions 1.0.1 dated 2019-01-29 and 1.1.0 dated 2019-05-12
DESCRIPTION | 9 ++-- MD5 | 46 +++++++++++---------- NAMESPACE | 1 NEWS.md | 29 ++++++++++++- R/check.R | 17 +++---- R/install.R | 4 - R/pksim.R | 21 +++++++-- R/solve_fun.R | 11 ++++- R/solve_mcsim.R | 91 +++++++++++++++++++++++++++--------------- build/vignette.rds |binary inst/doc/pbpk_apap.R | 22 +++++----- inst/doc/pbpk_apap.Rmd | 22 +++++----- inst/doc/pbpk_apap.html | 51 ++++++++++++----------- inst/doc/pbtk1cpt.R | 27 ++++++------ inst/doc/pbtk1cpt.Rmd | 27 ++++++------ inst/doc/pbtk1cpt.html | 36 ++++++++-------- man/check.Rd | 13 ++---- man/mcsim.Rd | 4 - man/solve_fun.Rd | 4 + man/solve_mcsim.Rd | 15 ++++-- tests/testthat/test-rfast99.R | 44 +++++++++----------- vignettes/pbpk_apap.Rmd | 22 +++++----- vignettes/pbpk_apap.model |only vignettes/pbtk1cpt.Rmd | 27 ++++++------ vignettes/pbtk1cpt.model |only 25 files changed, 308 insertions(+), 235 deletions(-)
Title: Procrustes Application to Cophylogenetic Analysis
Description: Procrustes analyses to infer co-phylogenetic
matching between pairs of (ultrametric) phylogenetic trees.
Author: Juan Antonio Balbuena <j.a.balbuena@uv.es>, Timothee Poisot
<tim@poisotlab.io>, Matthew Hutchinson <matthewhutchinson15@gmail.com>,
Fernando Cagua <fernando@cagua.co>
Maintainer: Matthew Hutchinson <matthewhutchinson15@gmail.com>
Diff between paco versions 0.3.2 dated 2017-07-16 and 0.4.0 dated 2019-05-12
DESCRIPTION | 15 ++++----- MD5 | 8 ++-- R/add_pcoord.r | 36 ++++++++++++++++++---- R/coordpcoa.r | 87 +++++++++++++++++++++++++++++++----------------------- man/add_pcoord.Rd | 4 +- 5 files changed, 94 insertions(+), 56 deletions(-)
Title: Heatmaps for Multiple Network Data
Description: Simplify the exploratory data analysis process for multiple network
data sets with the help of hierarchical clustering, consensus
clustering and heatmaps. Multiple network data consists of multiple
disjoint networks that have common variables (e.g. ego networks).
This package contains the necessary tools for exploring such data,
from the data pre-processing stage to the creation of dynamic
visualizations.
Author: Philippe Boileau [aut, cre]
Maintainer: Philippe Boileau <philippe_boileau@berkeley.edu>
Diff between neatmaps versions 2.0.0 dated 2019-03-15 and 2.1.0 dated 2019-05-12
DESCRIPTION | 6 +++--- MD5 | 19 ++++++++++++------- R/consClustResTable.R | 6 ++++-- R/consensusMap.R | 4 +++- R/neatmap.R | 21 +++++++++++---------- README.md | 14 +++++++++++++- inst |only man/consClustResTable.Rd | 7 +++++-- man/neatmap.Rd | 18 +++++++++--------- 9 files changed, 60 insertions(+), 35 deletions(-)
Title: Quantitative Analysis of Mass Spectrometry Data
Description: A complete analysis pipeline for matrix-assisted laser
desorption/ionization-time-of-flight (MALDI-TOF) and other
two-dimensional mass spectrometry data. In addition to commonly
used plotting and processing methods it includes distinctive
features, namely baseline subtraction methods such as
morphological filters (TopHat) or the statistics-sensitive
non-linear iterative peak-clipping algorithm (SNIP), peak
alignment using warping functions, handling of replicated
measurements as well as allowing spectra with different
resolutions.
Author: Sebastian Gibb [aut, cre] (<https://orcid.org/0000-0001-7406-4443>),
Korbinian Strimmer [ths] (<https://orcid.org/0000-0001-7917-2056>)
Maintainer: Sebastian Gibb <mail@sebastiangibb.de>
Diff between MALDIquant versions 1.19.2 dated 2019-03-13 and 1.19.3 dated 2019-05-12
DESCRIPTION | 13 +++++++------ MD5 | 14 +++++++------- NAMESPACE | 1 + NEWS | 9 +++++++++ R/AllGenerics.R | 21 --------------------- build/vignette.rds |binary inst/doc/MALDIquant-intro.pdf |binary man/match.closest.Rd | 1 - 8 files changed, 24 insertions(+), 35 deletions(-)
Title: Extra String Manipulation Functions
Description: There are some things that I wish were easier with the 'stringr'
or 'stringi' packages. The foremost of these is the extraction of numbers
from strings. 'stringr' and 'stringi' make you figure out the regular
expression for yourself; 'strex' takes care of this for you. There are many
other handy functionalities in 'strex'. Contributions to this package are
encouraged: it is intended as a miscellany of string manipulation functions
that cannot be found in 'stringi' or 'stringr'.
Author: Rory Nolan [aut, cre] (<https://orcid.org/0000-0002-5239-4043>)
Maintainer: Rory Nolan <rorynoolan@gmail.com>
Diff between strex versions 1.0.0 dated 2019-05-04 and 1.0.1 dated 2019-05-12
DESCRIPTION | 9 +++--- MD5 | 52 ++++++++++++++++++------------------- NEWS.md | 6 ++++ R/after.R | 2 - R/before.R | 4 +- R/camel-case.R | 1 R/currency.R | 4 +- R/elem.R | 6 ++-- R/extract-non-nums.R | 4 +- R/extract-nums.R | 4 +- R/give-ext.R | 2 - R/locate.R | 2 - R/num-after.R | 2 - R/num-before.R | 2 - R/remove.R | 2 - R/singleize.R | 2 - R/split-by-nums.R | 2 - R/to-vec.R | 2 - R/trim.R | 2 - R/utils.R | 2 + build/partial.rdb |binary build/vignette.rds |binary inst/doc/alphordering-numbers.html | 28 +++++++++---------- inst/doc/argument-matching.html | 4 +- inst/doc/before-and-after.html | 4 +- inst/doc/important-miscellany.html | 4 +- inst/doc/numbers-in-strings.html | 4 +- 27 files changed, 83 insertions(+), 73 deletions(-)
Title: 'Rcpp' Bindings for 'Annoy', a Library for Approximate Nearest
Neighbors
Description: 'Annoy' is a small C++ library for Approximate Nearest Neighbors
written for efficient memory usage as well an ability to load from / save to
disk. This package provides an R interface by relying on the 'Rcpp' package,
exposing the same interface as the original Python wrapper to 'Annoy'. See
<https://github.com/spotify/annoy> for more on 'Annoy'. 'Annoy' is released
under Version 2.0 of the Apache License. Also included is a small Windows
port of 'mmap' which is released under the MIT license.
Author: Dirk Eddelbuettel
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppAnnoy versions 0.0.11 dated 2018-11-01 and 0.0.12 dated 2019-05-12
RcppAnnoy-0.0.11/RcppAnnoy/inst/doc/UsingAnnoyInCpp.R |only RcppAnnoy-0.0.11/RcppAnnoy/inst/doc/UsingAnnoyInCpp.Rmd |only RcppAnnoy-0.0.11/RcppAnnoy/inst/doc/UsingAnnoyInCpp.pdf |only RcppAnnoy-0.0.11/RcppAnnoy/inst/tests |only RcppAnnoy-0.0.11/RcppAnnoy/tests/runUnitTests.R |only RcppAnnoy-0.0.11/RcppAnnoy/vignettes/UsingAnnoyInCpp.Rmd |only RcppAnnoy-0.0.11/RcppAnnoy/vignettes/rcppannoy.bib |only RcppAnnoy-0.0.12/RcppAnnoy/ChangeLog | 54 ++ RcppAnnoy-0.0.12/RcppAnnoy/DESCRIPTION | 11 RcppAnnoy-0.0.12/RcppAnnoy/MD5 | 39 +- RcppAnnoy-0.0.12/RcppAnnoy/R/annoy.R | 188 ++++++++++ RcppAnnoy-0.0.12/RcppAnnoy/build/vignette.rds |binary RcppAnnoy-0.0.12/RcppAnnoy/inst/NEWS.Rd | 14 RcppAnnoy-0.0.12/RcppAnnoy/inst/doc/UsingAnnoyInCcppWrapper.Rnw |only RcppAnnoy-0.0.12/RcppAnnoy/inst/doc/UsingAnnoyInCcppWrapper.pdf |only RcppAnnoy-0.0.12/RcppAnnoy/inst/tinytest |only RcppAnnoy-0.0.12/RcppAnnoy/man/AnnoyIndex.Rd |only RcppAnnoy-0.0.12/RcppAnnoy/man/RcppAnnoy-package.Rd | 8 RcppAnnoy-0.0.12/RcppAnnoy/src/annoy.cpp | 9 RcppAnnoy-0.0.12/RcppAnnoy/tests/tinytest.R |only RcppAnnoy-0.0.12/RcppAnnoy/vignettes/UsingAnnoyInCcppWrapper.Rnw |only RcppAnnoy-0.0.12/RcppAnnoy/vignettes/UsingAnnoyInCpp.pdf |only 22 files changed, 288 insertions(+), 35 deletions(-)
Title: Producing and Reproducing Results
Description: A system for embedded scientific computing and reproducible research with R.
The OpenCPU server exposes a simple but powerful HTTP api for RPC and data interchange
with R. This provides a reliable and scalable foundation for statistical services or
building R web applications. The OpenCPU server runs either as a single-user development
server within the interactive R session, or as a multi-user Linux stack based on Apache2.
The entire system is fully open source and permissively licensed. The OpenCPU website
has detailed documentation and example apps.
Author: Jeroen Ooms [aut, cre] (<https://orcid.org/0000-0002-4035-0289>)
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>
Diff between opencpu versions 2.1.1 dated 2019-02-24 and 2.1.2 dated 2019-05-12
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- NEWS | 4 ++++ R/parse_post.R | 2 +- build/vignette.rds |binary inst/doc/opencpu-paper.pdf |binary 6 files changed, 13 insertions(+), 9 deletions(-)
Title: k-Nearest Neighbor Join for Spatial Data
Description: K-nearest neighbor search for projected and non-projected 'sf' spatial layers. Nearest neighbor search uses (1) C code from GeographicLib for lon-lat point layers, (2) function nn2() from package 'RANN' for projected point layers, or (3) function st_distance() from package 'sf' for line or polygon layers.
Author: Michael Dorman [aut, cre],
Johnathan Rush [ctb],
Ian Hough [ctb],
Charles F.F Karney [ctb, cph] (Author of included C code from
'GeographicLib' for geodesic distance)
Maintainer: Michael Dorman <dorman@post.bgu.ac.il>
Diff between nngeo versions 0.2.7 dated 2019-03-12 and 0.2.8 dated 2019-05-12
nngeo-0.2.7/nngeo/R/RcppExports.R |only nngeo-0.2.7/nngeo/R/rcpp.R |only nngeo-0.2.7/nngeo/src/RcppExports.cpp |only nngeo-0.2.7/nngeo/src/distance.cpp |only nngeo-0.2.8/nngeo/DESCRIPTION | 24 +++++++-------- nngeo-0.2.8/nngeo/MD5 | 28 +++++++++-------- nngeo-0.2.8/nngeo/NAMESPACE | 3 - nngeo-0.2.8/nngeo/NEWS.md | 10 +++++- nngeo-0.2.8/nngeo/R/nngeo-package.R |only nngeo-0.2.8/nngeo/R/st_nn.R | 33 +++++++++++++++++++-- nngeo-0.2.8/nngeo/R/st_nn_pnt_geo.R | 14 +++++--- nngeo-0.2.8/nngeo/build/vignette.rds |binary nngeo-0.2.8/nngeo/inst/doc/intro.pdf |binary nngeo-0.2.8/nngeo/man/nngeo-package.Rd |only nngeo-0.2.8/nngeo/man/st_nn.Rd | 33 +++++++++++++++++++-- nngeo-0.2.8/nngeo/src/dist.c |only nngeo-0.2.8/nngeo/src/geodesic.c |only nngeo-0.2.8/nngeo/src/geodesic.h |only nngeo-0.2.8/nngeo/src/init.c |only nngeo-0.2.8/nngeo/tests/testthat/test_st_connect.R | 6 +-- 20 files changed, 108 insertions(+), 43 deletions(-)
Title: A Companion to the Multi-CAST Collection
Description: Provides a basic interface for accessing annotation data from
the Multi-CAST collection, a database of spoken natural language texts
edited by Geoffrey Haig and Stefan Schnell. The collection draws from a
diverse set of languages and has been annotated across multiple levels.
Annotation data is downloaded on request from the servers of the
University of Bamberg. See the Multi-CAST website
<https://multicast.aspra.uni-bamberg.de/> for more information and a list
of related publications.
Author: Nils Norman Schiborr [aut, cre]
Maintainer: Nils Norman Schiborr <nils-norman.schiborr@uni-bamberg.de>
Diff between multicastR versions 1.0.1 dated 2018-09-29 and 1.1.0 dated 2019-05-12
multicastR-1.0.1/multicastR/R/mc_eaf_to_mcr.R |only multicastR-1.0.1/multicastR/man/mc_convert_mcr.Rd |only multicastR-1.0.1/multicastR/man/mc_eaf_to_mcr.Rd |only multicastR-1.0.1/multicastR/man/mc_write_mcr.Rd |only multicastR-1.1.0/multicastR/DESCRIPTION | 19 - multicastR-1.1.0/multicastR/MD5 | 56 ++- multicastR-1.1.0/multicastR/NAMESPACE | 8 multicastR-1.1.0/multicastR/NEWS.md |only multicastR-1.1.0/multicastR/R/mc_eaf_to_tex.R |only multicastR-1.1.0/multicastR/R/mc_eaf_to_tsv.R |only multicastR-1.1.0/multicastR/R/mc_eaf_to_xml.R |only multicastR-1.1.0/multicastR/R/mc_miscellanea.R | 49 ++- multicastR-1.1.0/multicastR/R/mc_read_eaf.R | 62 +++ multicastR-1.1.0/multicastR/R/mc_reflist.R |only multicastR-1.1.0/multicastR/R/mc_subfunc.R | 43 +- multicastR-1.1.0/multicastR/R/mc_table.R | 314 ++++++++++++++++++++ multicastR-1.1.0/multicastR/R/multicast.R | 145 +++++---- multicastR-1.1.0/multicastR/R/multicastR.R | 15 multicastR-1.1.0/multicastR/inst/CITATION | 8 multicastR-1.1.0/multicastR/man/mc_build_xml.Rd |only multicastR-1.1.0/multicastR/man/mc_count_clauses.Rd | 24 + multicastR-1.1.0/multicastR/man/mc_eaf_to_tex.Rd |only multicastR-1.1.0/multicastR/man/mc_eaf_to_tsv.Rd |only multicastR-1.1.0/multicastR/man/mc_eaf_to_xml.Rd |only multicastR-1.1.0/multicastR/man/mc_index.Rd |only multicastR-1.1.0/multicastR/man/mc_meta_eaf.Rd | 9 multicastR-1.1.0/multicastR/man/mc_prep_table.Rd |only multicastR-1.1.0/multicastR/man/mc_prep_tsv.Rd |only multicastR-1.1.0/multicastR/man/mc_prep_xml.Rd |only multicastR-1.1.0/multicastR/man/mc_read_eaf.Rd | 5 multicastR-1.1.0/multicastR/man/mc_reflist.Rd |only multicastR-1.1.0/multicastR/man/mc_subfunc.Rd | 10 multicastR-1.1.0/multicastR/man/mc_table.Rd |only multicastR-1.1.0/multicastR/man/mc_write_refs.Rd |only multicastR-1.1.0/multicastR/man/mc_write_table.Rd |only multicastR-1.1.0/multicastR/man/mc_write_tex.Rd |only multicastR-1.1.0/multicastR/man/mc_write_tsv.Rd |only multicastR-1.1.0/multicastR/man/mc_write_xml.Rd |only multicastR-1.1.0/multicastR/man/mcindex.Rd | 21 - multicastR-1.1.0/multicastR/man/multicast.Rd | 93 +++-- multicastR-1.1.0/multicastR/man/multicastR.Rd | 12 41 files changed, 664 insertions(+), 229 deletions(-)
Title: Tuning of the Latent Dirichlet Allocation Models Parameters
Description: Estimates the best fitting number of topics.
Author: Murzintcev Nikita [aut, cre]
Maintainer: Murzintcev Nikita <nikita@lreis.ac.cn>
Diff between ldatuning versions 0.2.0 dated 2016-10-24 and 1.0.0 dated 2019-05-12
DESCRIPTION | 13 - MD5 | 18 - NAMESPACE | 1 R/main.R | 37 ++- build/vignette.rds |binary inst/doc/topics.html | 478 ++++++++++++++++++++++++++++++++++--------- man/Deveaud2014.Rd | 1 man/FindTopicsNumber.Rd | 16 - man/FindTopicsNumber_plot.Rd | 1 man/ldatuning.Rd | 1 10 files changed, 436 insertions(+), 130 deletions(-)
Title: Community Ecology Package
Description: Ordination methods, diversity analysis and other
functions for community and vegetation ecologists.
Author: Jari Oksanen, F. Guillaume Blanchet, Michael Friendly, Roeland Kindt,
Pierre Legendre, Dan McGlinn, Peter R. Minchin, R. B. O'Hara,
Gavin L. Simpson, Peter Solymos, M. Henry H. Stevens, Eduard Szoecs,
Helene Wagner
Maintainer: Jari Oksanen <jhoksane@gmail.com>
Diff between vegan versions 2.5-4 dated 2019-02-04 and 2.5-5 dated 2019-05-12
DESCRIPTION | 10 - MD5 | 34 ++--- NAMESPACE | 3 R/betadisper.R | 9 + R/influence.cca.R | 5 R/metaMDS.R | 3 build/partial.rdb |binary build/vignette.rds |binary inst/NEWS.Rd | 62 ++++++++++ inst/doc/decision-vegan.pdf |binary inst/doc/diversity-vegan.pdf |binary inst/doc/intro-vegan.pdf |binary inst/doc/partitioning.pdf |binary man/betadisper.Rd | 16 +- man/permutations.Rd | 16 ++ src/nestedness.c | 11 + tests/cca-object-tests.Rout.save | 214 ++++++++++++++++-------------------- tests/vegan-tests.Rout.save | 228 +++++++++++++++++++-------------------- 18 files changed, 336 insertions(+), 275 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-05-03 0.1.1
Title: Basic Robust Statistics
Description: "Essential" Robust Statistics.
Tools allowing to analyze data with robust methods. This includes
regression methodology including model selections and multivariate
statistics where we strive to cover the book "Robust Statistics,
Theory and Methods" by 'Maronna, Martin and Yohai'; Wiley 2006.
Author: Martin Maechler [aut, cre] (<https://orcid.org/0000-0002-8685-9910>),
Peter Rousseeuw [ctb] (Qn and Sn),
Christophe Croux [ctb] (Qn and Sn),
Valentin Todorov [aut] (most robust Cov),
Andreas Ruckstuhl [aut] (nlrob, anova, glmrob),
Matias Salibian-Barrera [aut] (lmrob orig.),
Tobias Verbeke [ctb, fnd] (mc, adjbox),
Manuel Koller [aut] (mc, lmrob, psi-func.),
Eduardo L. T. Conceicao [aut] (MM-, tau-, CM-, and MTL- nlrob),
Maria Anna di Palma [ctb] (initial version of Comedian)
Maintainer: Martin Maechler <maechler@stat.math.ethz.ch>
Diff between robustbase versions 0.93-4 dated 2019-03-19 and 0.93-5 dated 2019-05-12
DESCRIPTION | 10 MD5 | 62 ++-- build/partial.rdb |binary build/vignette.rds |binary inst/NEWS.Rd | 11 inst/doc/fastMcd-kmini.pdf |binary inst/doc/lmrob_simulation.pdf | 370 ++++++++++++++--------------- inst/doc/psi_functions.pdf |binary inst/xtraR/platform-sessionInfo.R | 25 + vignettes/plot-fig-AdB2-1.pdf |binary vignettes/plot-fig-Mscale-all.pdf |binary vignettes/plot-fig-Mscale.pdf |binary vignettes/plot-fig-cpr.pdf |binary vignettes/plot-fig-efficiency-all.pdf |binary vignettes/plot-fig-efficiency.pdf |binary vignettes/plot-fig-emp-level.pdf |binary vignettes/plot-fig-example-design.pdf |binary vignettes/plot-fig-lqq-level.pdf |binary vignettes/plot-fig-max-asymptotic-bias.pdf |binary vignettes/plot-fig-meanscale.pdf |binary vignettes/plot-fig-power-1-0_2.pdf |binary vignettes/plot-fig-power-1-0_4.pdf |binary vignettes/plot-fig-power-1-0_6.pdf |binary vignettes/plot-fig-power-1-0_8.pdf |binary vignettes/plot-fig-power-1-1.pdf |binary vignettes/plot-fig-pred-points.pdf |binary vignettes/plot-fig-psi-functions.pdf |binary vignettes/plot-fig-qscale-all.pdf |binary vignettes/plot-fig-qscale.pdf |binary vignettes/plot-fig-sdAdB2-1.pdf |binary vignettes/plot-fig-sdscale-1.pdf |binary vignettes/plot-fig-sdscale-all.pdf |binary 32 files changed, 252 insertions(+), 226 deletions(-)
Title: Linear and Nonlinear Mixed Effects Models
Description: Fit and compare Gaussian linear and nonlinear mixed-effects models.
Author: José Pinheiro [aut] (S version),
Douglas Bates [aut] (up to 2007),
Saikat DebRoy [ctb] (up to 2002),
Deepayan Sarkar [ctb] (up to 2005),
EISPACK authors [ctb] (src/rs.f),
Siem Heisterkamp [ctb] (Author fixed sigma),
Bert Van Willigen [ctb] (Programmer fixed sigma),
R-core [aut, cre]
Maintainer: R-core <R-core@R-project.org>
Diff between nlme versions 3.1-139 dated 2019-04-09 and 3.1-140 dated 2019-05-12
ChangeLog | 12 ++++++++++++ DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- src/init.c | 2 +- src/nlmefit.c | 2 +- 5 files changed, 22 insertions(+), 10 deletions(-)
Title: Lookup Tables to Generate Poverty Likelihoods and Rates using
the Poverty Probability Index (PPI)
Description: The Poverty Probability Index (PPI) is a poverty measurement tool
for organizations and businesses with a mission to serve the poor. The PPI
is statistically-sound, yet simple to use: the answers to 10 questions about
a household’s characteristics and asset ownership are scored to compute the
likelihood that the household is living below the poverty line – or above by
only a narrow margin. This package contains country-specific lookup data tables
used as reference to determine the poverty likelihood of a household based
on their score from the country-specific PPI questionnaire. These lookup
tables have been extracted from documentation of the PPI found at
<https://www.povertyindex.org> and managed by Innovations for Poverty Action
<https://www.poverty-action.org>.
Author: Ernest Guevarra [aut, cre] (<https://orcid.org/0000-0002-4887-4415>)
Maintainer: Ernest Guevarra <ernestgmd@gmail.com>
Diff between ppitables versions 0.4.0 dated 2019-01-02 and 0.5.0 dated 2019-05-12
DESCRIPTION | 6 - MD5 | 24 +++--- NEWS.md | 11 ++ R/data.R | 173 +++++++++++++++++++++++++++------------------- R/sysdata.rda |binary README.md | 154 +++++++++++++++++++++------------------- data/ppiGHA2019.rda |only inst/createHexSticker.R | 2 man/figures/ppitables.png |binary man/ppiDOM2018.Rd | 36 ++++----- man/ppiGHA2019.Rd |only man/ppiKEN2018.Rd | 6 - man/ppiSEN2018.Rd | 36 ++++----- man/ppiZMB2013_got.Rd | 6 - 14 files changed, 255 insertions(+), 199 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-10-18 2.0.0
2017-01-05 1.2.1
2016-12-21 1.2.0
2016-04-05 1.1.2
2016-03-16 1.1.0
2015-11-21 1.0.1
2015-11-20 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-03-18 0.3.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-04-23 1.1.2
2019-04-18 1.1.1
2018-07-30 1.0.8
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-12-21 1.0.1
2018-11-04 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-02-06 0.5.2
2017-10-05 0.5.1
2016-07-13 0.5.0
2015-11-29 0.4.1
2015-11-25 0.4
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-10-16 0.2.0
2015-10-28 0.1.1
Title: Tufte's Styles for R Markdown Documents
Description: Provides R Markdown output formats to use Tufte styles for PDF and HTML output.
Author: Yihui Xie [aut, cre] (<https://orcid.org/0000-0003-0645-5666>),
JJ Allaire [aut],
Andrzej Oles [ctb],
Dave Liepmann [ctb] (Tufte CSS in
inst/rmarkdown/templates/tufte_html/resources),
RStudio, Inc. [cph]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between tufte versions 0.4 dated 2018-07-15 and 0.5 dated 2019-05-12
tufte-0.4/tufte/NEWS.md |only tufte-0.5/tufte/DESCRIPTION | 10 +++++----- tufte-0.5/tufte/MD5 | 9 ++++----- tufte-0.5/tufte/R/html.R | 6 +++--- tufte-0.5/tufte/README.md | 4 ++-- tufte-0.5/tufte/man/tufte_handout.Rd | 2 +- 6 files changed, 15 insertions(+), 16 deletions(-)
Title: Build Machine Learning Models Like Using Python's Scikit-Learn
Library in R
Description: The idea is to provide a standard interface
to users who use both R and Python for building machine learning models.
This package provides a scikit-learn's fit, predict interface to
train machine learning models in R.
Author: Manish Saraswat [aut, cre]
Maintainer: Manish Saraswat <manish06saraswat@gmail.com>
Diff between superml versions 0.3.0 dated 2019-03-16 and 0.4.0 dated 2019-05-12
DESCRIPTION | 16 - MD5 | 20 - NAMESPACE | 2 NEWS.md | 4 R/SVMTrainer.R | 242 ++++++++---------- R/super_utils.R | 7 inst/doc/introduction.R | 11 inst/doc/introduction.Rmd | 11 inst/doc/introduction.html | 592 ++++++++++++++++++++++----------------------- man/SVMTrainer.Rd | 23 - vignettes/introduction.Rmd | 11 11 files changed, 437 insertions(+), 502 deletions(-)
Title: Bridge Between 'R' and 'Scala' with Callbacks
Description: 'Scala' <http://www.scala-lang.org/> is embedded in 'R' and callbacks from 'Scala' to 'R' are available. Support is provided to write 'R' packages that access 'Scala'. After installation, please run 'rscala::scalaConfig()'.
Author: David B. Dahl [aut, cre]
Maintainer: David B. Dahl <dahl@stat.byu.edu>
Diff between rscala versions 3.2.6 dated 2018-12-15 and 3.2.8 dated 2019-05-12
rscala-3.2.6/rscala/inst/java/scala-2.11/rscala_2.11-3.2.6.jar |only rscala-3.2.6/rscala/inst/java/scala-2.12/rscala_2.12-3.2.6.jar |only rscala-3.2.6/rscala/inst/java/scala-2.13.0-M5 |only rscala-3.2.6/rscala/java/rscala_2.12-3.2.6-sources.jar |only rscala-3.2.8/rscala/DESCRIPTION | 8 rscala-3.2.8/rscala/MD5 | 41 - rscala-3.2.8/rscala/NAMESPACE | 1 rscala-3.2.8/rscala/NEWS | 9 rscala-3.2.8/rscala/R/scala.R | 31 - rscala-3.2.8/rscala/R/scalaConfig.R | 286 ++++------ rscala-3.2.8/rscala/R/scalaPull.R | 49 + rscala-3.2.8/rscala/R/scalaPush.R | 28 rscala-3.2.8/rscala/R/scalaSBT.R | 10 rscala-3.2.8/rscala/R/sysdata.rda |only rscala-3.2.8/rscala/README.md | 2 rscala-3.2.8/rscala/build/vignette.rds |binary rscala-3.2.8/rscala/configure | 2 rscala-3.2.8/rscala/configure.win | 2 rscala-3.2.8/rscala/inst/data-raw |only rscala-3.2.8/rscala/inst/doc/rscala.pdf |binary rscala-3.2.8/rscala/inst/java/scala-2.11/rscala_2.11-3.2.8.jar |only rscala-3.2.8/rscala/inst/java/scala-2.12/rscala_2.12-3.2.8.jar |only rscala-3.2.8/rscala/inst/java/scala-2.13.0-RC1 |only rscala-3.2.8/rscala/java/rscala_2.12-3.2.8-sources.jar |only rscala-3.2.8/rscala/man/scala.Rd | 7 rscala-3.2.8/rscala/man/scalaSBT.Rd | 10 26 files changed, 285 insertions(+), 201 deletions(-)
Title: The MCFS-ID Algorithm for Feature Selection and Interdependency
Discovery
Description: MCFS-ID (Monte Carlo Feature Selection and Interdependency Discovery) is a Monte Carlo method-based tool for feature selection. It also allows for the discovery of interdependencies between the relevant features. MCFS-ID is particularly suitable for the analysis of high-dimensional, 'small n large p' transactional and biological data. M. Draminski, J. Koronacki (2018) <doi:10.18637/jss.v085.i12>.
Author: Michal Draminski [aut, cre],
Jacek Koronacki [aut],
Julian Zubek [ctb]
Maintainer: Michal Draminski <michal.draminski@ipipan.waw.pl>
Diff between rmcfs versions 1.2.15 dated 2018-10-20 and 1.3.0 dated 2019-05-12
rmcfs-1.2.15/rmcfs/inst/java/colt-1.2.0.jar |only rmcfs-1.2.15/rmcfs/java/src/dmLab/array/meta/AttributeDef.java |only rmcfs-1.2.15/rmcfs/java/src/dmLab/mcfs/attributesID/Dependency.java |only rmcfs-1.2.15/rmcfs/java/src/dmLab/mcfs/attributesID/DependencyFactors.java |only rmcfs-1.2.15/rmcfs/java/src/dmLab/mcfs/attributesID/DependencyIdx.java |only rmcfs-1.2.15/rmcfs/java/src/dmLab/mcfs/attributesID/DependencyList.java |only rmcfs-1.2.15/rmcfs/java/src/dmLab/mcfs/attributesID/DependencyLoader.java |only rmcfs-1.2.15/rmcfs/java/src/dmLab/utils/dataframe/Column.java |only rmcfs-1.3.0/rmcfs/DESCRIPTION | 13 rmcfs-1.3.0/rmcfs/LICENSE.note | 2 rmcfs-1.3.0/rmcfs/MD5 | 571 ++++---- rmcfs-1.3.0/rmcfs/NAMESPACE | 6 rmcfs-1.3.0/rmcfs/NEWS.md | 35 rmcfs-1.3.0/rmcfs/R/cmatrix.R |only rmcfs-1.3.0/rmcfs/R/onLoad.R | 2 rmcfs-1.3.0/rmcfs/R/rmcfs.R | 509 +++++-- rmcfs-1.3.0/rmcfs/R/rmcfs.io.R | 334 ++-- rmcfs-1.3.0/rmcfs/R/rmcfs.plot.R | 549 +++++-- rmcfs-1.3.0/rmcfs/R/utils.R | 304 ++-- rmcfs-1.3.0/rmcfs/build/vignette.rds |binary rmcfs-1.3.0/rmcfs/inst/doc/v85i12.pdf |binary rmcfs-1.3.0/rmcfs/inst/java/dmLab.jar |binary rmcfs-1.3.0/rmcfs/inst/java/weka12.jar |binary rmcfs-1.3.0/rmcfs/java/src/dmLab/DMLabInfo.java | 36 rmcfs-1.3.0/rmcfs/java/src/dmLab/array/Array.java | 67 rmcfs-1.3.0/rmcfs/java/src/dmLab/array/FArray.java | 9 rmcfs-1.3.0/rmcfs/java/src/dmLab/array/SArray.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/array/converter/Converter.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/array/domain/ADXDomain.java | 9 rmcfs-1.3.0/rmcfs/java/src/dmLab/array/domain/ADXDomainSet.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/array/domain/ADXDomainValue.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/array/domain/Domain.java | 8 rmcfs-1.3.0/rmcfs/java/src/dmLab/array/domain/FDomain.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/array/domain/SDomain.java | 9 rmcfs-1.3.0/rmcfs/java/src/dmLab/array/functions/DiscFunctions.java | 11 rmcfs-1.3.0/rmcfs/java/src/dmLab/array/functions/ExtFunctions.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/array/functions/SelectFunctions.java | 131 + rmcfs-1.3.0/rmcfs/java/src/dmLab/array/loader/DB2Array.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/array/loader/Data2Array.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/array/loader/File2Array.java | 30 rmcfs-1.3.0/rmcfs/java/src/dmLab/array/loader/fileLoader/FileLoader.java | 15 rmcfs-1.3.0/rmcfs/java/src/dmLab/array/loader/fileLoader/FileLoaderADH.java | 23 rmcfs-1.3.0/rmcfs/java/src/dmLab/array/loader/fileLoader/FileLoaderADX.java | 108 - rmcfs-1.3.0/rmcfs/java/src/dmLab/array/loader/fileLoader/FileLoaderArff.java | 8 rmcfs-1.3.0/rmcfs/java/src/dmLab/array/loader/fileLoader/FileLoaderCSV.java | 34 rmcfs-1.3.0/rmcfs/java/src/dmLab/array/loader/fileLoader/FileType.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/array/loader/fileLoader/NullLabels.java | 8 rmcfs-1.3.0/rmcfs/java/src/dmLab/array/meta/Attribute.java | 34 rmcfs-1.3.0/rmcfs/java/src/dmLab/array/meta/AttributeRole.java |only rmcfs-1.3.0/rmcfs/java/src/dmLab/array/meta/AttributesMetaInfo.java |only rmcfs-1.3.0/rmcfs/java/src/dmLab/array/meta/Dictionary.java | 16 rmcfs-1.3.0/rmcfs/java/src/dmLab/array/meta/DiscRanges.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/array/saver/Array2ADH.java | 8 rmcfs-1.3.0/rmcfs/java/src/dmLab/array/saver/Array2ADX.java | 9 rmcfs-1.3.0/rmcfs/java/src/dmLab/array/saver/Array2Arff.java | 8 rmcfs-1.3.0/rmcfs/java/src/dmLab/array/saver/Array2CSV.java | 8 rmcfs-1.3.0/rmcfs/java/src/dmLab/array/saver/Array2DTA.java | 8 rmcfs-1.3.0/rmcfs/java/src/dmLab/array/saver/Array2File.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/array/saver/Array2Instances.java | 12 rmcfs-1.3.0/rmcfs/java/src/dmLab/array/saver/Array2String.java | 8 rmcfs-1.3.0/rmcfs/java/src/dmLab/array/saver/Array2VAR.java | 8 rmcfs-1.3.0/rmcfs/java/src/dmLab/classifier/Classifier.java | 12 rmcfs-1.3.0/rmcfs/java/src/dmLab/classifier/Params.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/classifier/Prediction.java | 9 rmcfs-1.3.0/rmcfs/java/src/dmLab/classifier/PredictionResult.java | 10 rmcfs-1.3.0/rmcfs/java/src/dmLab/classifier/WekaClassifier.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/classifier/WekaTree.java | 10 rmcfs-1.3.0/rmcfs/java/src/dmLab/classifier/adx/ADXClassifier.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/classifier/adx/ADXParams.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/classifier/adx/complex/Complex.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/classifier/adx/complex/ComplexList.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/classifier/adx/complex/ComplexSet.java | 9 rmcfs-1.3.0/rmcfs/java/src/dmLab/classifier/adx/complex/Quality.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/classifier/adx/complex/complexLinks/ComplexLink.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/classifier/adx/complex/complexLinks/ComplexLinks.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/classifier/adx/ruleFamily/Coverage.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/classifier/adx/ruleFamily/RuleFamily.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/classifier/adx/ruleParser/CovParser.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/classifier/adx/ruleParser/RuleFamilyParser.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/classifier/adx/ruleSet/RuleSet.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/classifier/adx/ruleSet/SelectRules.java | 9 rmcfs-1.3.0/rmcfs/java/src/dmLab/classifier/adx/selector/Selector.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/classifier/adx/selector/SelectorList.java | 10 rmcfs-1.3.0/rmcfs/java/src/dmLab/classifier/attributeIndicators/ADXSelectorIndicators.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/classifier/attributeIndicators/AttributeIndicators.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/classifier/attributeIndicators/J48NodeIndicators.java | 24 rmcfs-1.3.0/rmcfs/java/src/dmLab/classifier/attributeIndicators/SliqNodeIndicators.java | 12 rmcfs-1.3.0/rmcfs/java/src/dmLab/classifier/bayesNet/BayesNetClassifier.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/classifier/bayesNet/BayesNetParams.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/classifier/ensemble/EnsembleClassifier.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/classifier/ensemble/EnsembleDecisionWeights.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/classifier/ensemble/EnsembleParams.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/classifier/hyperPipes/HyperPipesClassifier.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/classifier/hyperPipes/HyperPipesParams.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/classifier/j48/J48Classifier.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/classifier/j48/J48Params.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/classifier/knn/KNNClassifier.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/classifier/knn/KNNParams.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/classifier/logistic/LogisticClassifier.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/classifier/logistic/LogisticParams.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/classifier/m5/M5Classifier.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/classifier/m5/M5Params.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/classifier/nb/NBClassifier.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/classifier/nb/NBParams.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/classifier/randomForest/RandomForestClassifier.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/classifier/randomForest/RandomForestParams.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/classifier/ripper/RipperClassifier.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/classifier/ripper/RipperParams.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/classifier/rnd/RNDClassifier.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/classifier/rnd/RNDParams.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/classifier/sliq/AttributeList.java | 9 rmcfs-1.3.0/rmcfs/java/src/dmLab/classifier/sliq/AttributeListEvent.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/classifier/sliq/AttributeProxyEvent.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/classifier/sliq/ClassList.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/classifier/sliq/ClassListEvent.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/classifier/sliq/ClassProxyEvent.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/classifier/sliq/NominalHistogram.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/classifier/sliq/NumericHistogram.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/classifier/sliq/SliqClassifier.java | 9 rmcfs-1.3.0/rmcfs/java/src/dmLab/classifier/sliq/SliqInfo.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/classifier/sliq/SliqNode.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/classifier/sliq/SliqParams.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/classifier/sliq/SliqTree.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/classifier/sliq/Tree/Const.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/classifier/sliq/Tree/Node.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/classifier/sliq/Tree/Tree.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/classifier/sliq/Tree/treePruning/TreePruning.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/classifier/sliq/Tree/treePruning/mdlTreePruning/MdlTreePruning.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/classifier/svm/SVMClassifier.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/classifier/svm/SVMParams.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/discretizer/Discretizer.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/discretizer/DiscretizerParams.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/discretizer/change/CutPoints.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/discretizer/change/DiscChange.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/discretizer/change/Event.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/discretizer/chiMerge/ChiMerge.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/discretizer/chiMerge/DiscChiMerge.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/discretizer/equalFrequency/EqualFrequency.java | 8 rmcfs-1.3.0/rmcfs/java/src/dmLab/discretizer/equalRanges/EqualRanges.java | 16 rmcfs-1.3.0/rmcfs/java/src/dmLab/discretizer/fayyadIrani/FayyadIrani.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/experiment/ExperimentParams.java | 76 - rmcfs-1.3.0/rmcfs/java/src/dmLab/experiment/classification/Classification.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/experiment/classification/ClassificationBody.java | 12 rmcfs-1.3.0/rmcfs/java/src/dmLab/experiment/classification/ClassificationParams.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/experiment/discretization/Discretization.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/experiment/discretization/DiscretizationBody.java | 11 rmcfs-1.3.0/rmcfs/java/src/dmLab/experiment/discretization/DiscretizationParams.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/experiment/ensembleOptimization/EnsembleEvaluator.java | 10 rmcfs-1.3.0/rmcfs/java/src/dmLab/experiment/ensembleOptimization/EnsembleExperiment.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/experiment/ensembleOptimization/EnsembleGenetic.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/geneticFramework/Evaluator.java | 10 rmcfs-1.3.0/rmcfs/java/src/dmLab/geneticFramework/Genetic.java | 10 rmcfs-1.3.0/rmcfs/java/src/dmLab/geneticFramework/Instance.java | 10 rmcfs-1.3.0/rmcfs/java/src/dmLab/geneticFramework/Parameter.java | 10 rmcfs-1.3.0/rmcfs/java/src/dmLab/geneticFramework/Population.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/gui/DMLab.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/gui/chartPanel/ChartFrame.java | 10 rmcfs-1.3.0/rmcfs/java/src/dmLab/gui/chartPanel/DataSeries.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/gui/chartPanel/ImagePanel.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/gui/chartPanel/JLineChart.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/gui/chartPanel/LineChart.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/gui/chartPanel/MyLineChart.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/gui/dataEditor/ContainerOperations.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/gui/dataEditor/Editor.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/gui/dataEditor/EditorBody.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/gui/dataEditor/EditorInfo.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/gui/dataEditor/components/EditorMenuBar.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/gui/dataEditor/components/EditorToolBar.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/gui/dataEditor/components/GlyphButton.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/gui/dataEditor/dbConnector/DBConnector.java | 10 rmcfs-1.3.0/rmcfs/java/src/dmLab/gui/dataEditor/dbConnector/DBProps.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/gui/dataEditor/panels/AttrFilterPanel.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/gui/dataEditor/panels/AttributesPanel.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/gui/dataEditor/panels/DBConnectionPanel.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/gui/dataEditor/panels/EventsFilterPanel.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/gui/dataEditor/panels/EventsPanel.java | 8 rmcfs-1.3.0/rmcfs/java/src/dmLab/gui/dataEditor/panels/OptionsPanel.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/gui/dataEditor/panels/ReplacePanel.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/gui/dataEditor/utils/AttributeType.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/gui/dataEditor/utils/InfoStream.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/gui/dataEditor/utils/customTable/AttributesTableSelectionListener.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/gui/dataEditor/utils/customTable/CustomTableCellRenderer.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/gui/dataEditor/utils/customTable/EventsTableSelectionListener.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/gui/dataEditor/utils/intText/IntTextDocument.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/gui/dataEditor/utils/intText/IntTextField.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/gui/dataEditor/utils/sortModel/SortFilterModel.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/gui/dataEditor/windows/AboutWindow.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/gui/dataEditor/windows/DBConnectionWindow.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/gui/graphViewer/GraphViewer.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/gui/graphViewer/GraphViewerBody.java | 14 rmcfs-1.3.0/rmcfs/java/src/dmLab/gui/graphViewer/GraphViewerInfo.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/gui/graphViewer/components/DoubleJSlider.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/gui/graphViewer/components/GraphViewerMenu.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/gui/graphViewer/components/GraphViewerToolBar.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/gui/graphViewer/visualization/GraphVisualization.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/gui/mainWindow/MCFSPanel.java | 11 rmcfs-1.3.0/rmcfs/java/src/dmLab/gui/mainWindow/MainWindow.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/gui/mainWindow/MainWindowToolBar.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/mcfs/MCFS.java | 26 rmcfs-1.3.0/rmcfs/java/src/dmLab/mcfs/MCFSParams.java | 125 + rmcfs-1.3.0/rmcfs/java/src/dmLab/mcfs/attributesID/AttributesID.java | 696 ++++------ rmcfs-1.3.0/rmcfs/java/src/dmLab/mcfs/attributesID/IDEdge.java |only rmcfs-1.3.0/rmcfs/java/src/dmLab/mcfs/attributesID/IDEdgeIterator.java |only rmcfs-1.3.0/rmcfs/java/src/dmLab/mcfs/attributesID/IDEntity.java |only rmcfs-1.3.0/rmcfs/java/src/dmLab/mcfs/attributesID/IDLink.java |only rmcfs-1.3.0/rmcfs/java/src/dmLab/mcfs/attributesID/IDList.java |only rmcfs-1.3.0/rmcfs/java/src/dmLab/mcfs/attributesID/IDLoader.java |only rmcfs-1.3.0/rmcfs/java/src/dmLab/mcfs/attributesID/IDProps.java |only rmcfs-1.3.0/rmcfs/java/src/dmLab/mcfs/attributesID/graph/GraphEdge.java | 17 rmcfs-1.3.0/rmcfs/java/src/dmLab/mcfs/attributesID/graph/GraphNode.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/mcfs/attributesID/graph/IDGraph.java | 69 rmcfs-1.3.0/rmcfs/java/src/dmLab/mcfs/attributesRI/AttributesRI.java | 235 ++- rmcfs-1.3.0/rmcfs/java/src/dmLab/mcfs/attributesRI/Dictionary.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/mcfs/attributesRI/ExperimentIndicators.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/mcfs/attributesRI/Ranking.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/mcfs/attributesRI/measuresRI/ADXRIMeasure.java | 9 rmcfs-1.3.0/rmcfs/java/src/dmLab/mcfs/attributesRI/measuresRI/ClassifiersMeasure.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/mcfs/attributesRI/measuresRI/Importance.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/mcfs/attributesRI/measuresRI/ImportanceMeasure.java | 9 rmcfs-1.3.0/rmcfs/java/src/dmLab/mcfs/attributesRI/measuresRI/J48RIMeasure.java | 9 rmcfs-1.3.0/rmcfs/java/src/dmLab/mcfs/attributesRI/measuresRI/NodesMeasure.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/mcfs/attributesRI/measuresRI/ProjectionMeasure.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/mcfs/attributesRI/measuresRI/RINormMeasure.java | 9 rmcfs-1.3.0/rmcfs/java/src/dmLab/mcfs/attributesRI/measuresRI/SliqRIMeasure.java | 9 rmcfs-1.3.0/rmcfs/java/src/dmLab/mcfs/cutoffMethods/ContrastCutoff.java | 9 rmcfs-1.3.0/rmcfs/java/src/dmLab/mcfs/cutoffMethods/CriticalAngleCutoff.java | 9 rmcfs-1.3.0/rmcfs/java/src/dmLab/mcfs/cutoffMethods/Cutoff.java | 21 rmcfs-1.3.0/rmcfs/java/src/dmLab/mcfs/cutoffMethods/CutoffMethod.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/mcfs/cutoffMethods/KMeansCutoff.java | 15 rmcfs-1.3.0/rmcfs/java/src/dmLab/mcfs/mcfsEngine/MCFSAutoParams.java | 8 rmcfs-1.3.0/rmcfs/java/src/dmLab/mcfs/mcfsEngine/MCFSExperiment.java | 380 +++-- rmcfs-1.3.0/rmcfs/java/src/dmLab/mcfs/mcfsEngine/MCFSFinalCV.java | 52 rmcfs-1.3.0/rmcfs/java/src/dmLab/mcfs/mcfsEngine/arrays/MCFSArrays.java | 29 rmcfs-1.3.0/rmcfs/java/src/dmLab/mcfs/mcfsEngine/framework/GlobalStats.java | 67 rmcfs-1.3.0/rmcfs/java/src/dmLab/mcfs/mcfsEngine/framework/MCFSClassic.java | 10 rmcfs-1.3.0/rmcfs/java/src/dmLab/mcfs/mcfsEngine/framework/MCFSFramework.java | 209 +-- rmcfs-1.3.0/rmcfs/java/src/dmLab/mcfs/mcfsEngine/framework/MCFSJob.java | 20 rmcfs-1.3.0/rmcfs/java/src/dmLab/mcfs/mcfsEngine/framework/MCFSPermutation.java | 24 rmcfs-1.3.0/rmcfs/java/src/dmLab/mcfs/mcfsEngine/modules/Projection.java | 13 rmcfs-1.3.0/rmcfs/java/src/dmLab/mcfs/mcfsEngine/modules/Split.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/mcfs/tree/Tree.java | 40 rmcfs-1.3.0/rmcfs/java/src/dmLab/mcfs/tree/TreeNode.java | 85 - rmcfs-1.3.0/rmcfs/java/src/dmLab/mcfs/tree/parser/J48Parser.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/mcfs/tree/parser/M5Parser.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/mcfs/tree/parser/TreeNodeParser.java | 64 rmcfs-1.3.0/rmcfs/java/src/dmLab/mcfs/tree/parser/TreeParser.java | 11 rmcfs-1.3.0/rmcfs/java/src/dmLab/utils/ArrayUtils.java | 130 - rmcfs-1.3.0/rmcfs/java/src/dmLab/utils/FileUtils.java | 57 rmcfs-1.3.0/rmcfs/java/src/dmLab/utils/GeneralUtils.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/utils/ImageUtils.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/utils/MathUtils.java | 8 rmcfs-1.3.0/rmcfs/java/src/dmLab/utils/MyDict.java | 9 rmcfs-1.3.0/rmcfs/java/src/dmLab/utils/MyEncrypt.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/utils/MyString.java | 10 rmcfs-1.3.0/rmcfs/java/src/dmLab/utils/ProgressBar.java |only rmcfs-1.3.0/rmcfs/java/src/dmLab/utils/ProgressCounter.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/utils/StreamUtils.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/utils/StringUtils.java | 77 - rmcfs-1.3.0/rmcfs/java/src/dmLab/utils/cmatrix/ConfusionMatrix.java | 34 rmcfs-1.3.0/rmcfs/java/src/dmLab/utils/cmatrix/QualityMeasure.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/utils/condition/Condition.java | 14 rmcfs-1.3.0/rmcfs/java/src/dmLab/utils/condition/Operator.java | 38 rmcfs-1.3.0/rmcfs/java/src/dmLab/utils/condition/Rule.java |only rmcfs-1.3.0/rmcfs/java/src/dmLab/utils/condition/Ruleset.java |only rmcfs-1.3.0/rmcfs/java/src/dmLab/utils/condition/Selector.java |only rmcfs-1.3.0/rmcfs/java/src/dmLab/utils/condition/SelectorNominal.java |only rmcfs-1.3.0/rmcfs/java/src/dmLab/utils/condition/SelectorNumeric.java |only rmcfs-1.3.0/rmcfs/java/src/dmLab/utils/dataframe/ColumnMetaInfo.java |only rmcfs-1.3.0/rmcfs/java/src/dmLab/utils/dataframe/DataFrame.java | 149 +- rmcfs-1.3.0/rmcfs/java/src/dmLab/utils/dirCrawler/DirCrawler.java | 8 rmcfs-1.3.0/rmcfs/java/src/dmLab/utils/dirCrawler/DirCrawlerProps.java | 13 rmcfs-1.3.0/rmcfs/java/src/dmLab/utils/dirCrawler/FileExtFilter.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/utils/fileFilters/ComplexFileFilter.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/utils/fileFilters/MyFileFilter.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/utils/helpers/MinMax.java | 27 rmcfs-1.3.0/rmcfs/java/src/dmLab/utils/helpers/ParsingException.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/utils/helpers/Props.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/utils/list/FloatList.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/utils/list/IntegerList.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/utils/list/ObjectList.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/utils/list/StringList.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/utils/roulette |only rmcfs-1.3.0/rmcfs/java/src/dmLab/utils/statFunctions/LinearRegression.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/utils/statFunctions/StatFunctions.java | 233 +-- rmcfs-1.3.0/rmcfs/java/src/dmLab/utils/statList/StatsList.java | 7 rmcfs-1.3.0/rmcfs/java/src/dmLab/utils/statList/StatsObject.java | 7 rmcfs-1.3.0/rmcfs/man/build.idgraph.Rd | 1 rmcfs-1.3.0/rmcfs/man/export.plots.Rd |only rmcfs-1.3.0/rmcfs/man/export.result.Rd | 10 rmcfs-1.3.0/rmcfs/man/fix.data.Rd | 3 rmcfs-1.3.0/rmcfs/man/import.result.Rd | 11 rmcfs-1.3.0/rmcfs/man/mcfs.Rd | 42 rmcfs-1.3.0/rmcfs/man/plot.idgraph.Rd | 4 rmcfs-1.3.0/rmcfs/man/plot.mcfs.Rd | 12 rmcfs-1.3.0/rmcfs/man/prune.data.Rd | 4 rmcfs-1.3.0/rmcfs/tests/testthat/test-io.R |only rmcfs-1.3.0/rmcfs/tests/testthat/test-man.build.idgraph.R | 1 rmcfs-1.3.0/rmcfs/tests/testthat/test-mcfs.M5.R | 2 rmcfs-1.3.0/rmcfs/tests/testthat/test-mcfs.R | 32 rmcfs-1.3.0/rmcfs/tests/testthat/test-mcfs.mode2.R |only 300 files changed, 3752 insertions(+), 3819 deletions(-)
Title: Bayesian Meta-Analysis via 'Stan'
Description: Performs Bayesian meta-analysis and model-based meta-analysis using 'Stan'.
Includes binomial-normal hierarchical models and option to use weakly informative priors for the
heterogeneity parameter and the treatment effect parameter which are described in
Guenhan, Roever, and Friede (2018) <arXiv:1809.04407>.
Author: Burak Kuersad Guenhan [aut, cre]
(<https://orcid.org/0000-0002-7454-8680>),
Trustees of Columbia University [cph] (src/init.cpp, tools/make_cpp.R,
R/stanmodels.R)
Maintainer: Burak Kuersad Guenhan <burak.gunhan@med.uni-goettingen.de>
Diff between MetaStan versions 0.0.3 dated 2019-01-19 and 0.1.0 dated 2019-05-12
MetaStan-0.0.3/MetaStan/src/stan_files/BNHM_Higgins-336025a9.o.tmp |only MetaStan-0.1.0/MetaStan/DESCRIPTION | 12 +++--- MetaStan-0.1.0/MetaStan/MD5 | 20 +++++++--- MetaStan-0.1.0/MetaStan/NAMESPACE | 2 + MetaStan-0.1.0/MetaStan/R/MBMA_stan.R |only MetaStan-0.1.0/MetaStan/R/create_MBMA_dat.R |only MetaStan-0.1.0/MetaStan/R/dat.Eletriptan.R |only MetaStan-0.1.0/MetaStan/R/zzz.R | 3 + MetaStan-0.1.0/MetaStan/build/vignette.rds |binary MetaStan-0.1.0/MetaStan/data/dat.Eletriptan.rda |only MetaStan-0.1.0/MetaStan/inst/doc/MetaStan_BNHM.html | 13 ++++-- MetaStan-0.1.0/MetaStan/man/MBMA_stan.Rd |only MetaStan-0.1.0/MetaStan/man/create_MBMA_dat.Rd |only MetaStan-0.1.0/MetaStan/man/dat.Eletriptan.Rd |only MetaStan-0.1.0/MetaStan/src/stan_files/AB_Emax.stan |only MetaStan-0.1.0/MetaStan/tests/testthat/test_MBMA.R |only 16 files changed, 34 insertions(+), 16 deletions(-)
Title: Project Management Tools
Description: Tools for data importation, recoding, and inspection that
are used at the University of Kansas Center for Research Methods
and Data Analysis. There are functions to create new project
folders, R code templates, create uniquely named output
directories, and to quickly obtain a visual summary for each
variable in a data frame. The main feature here is the systematic
implementation of the "variable key" framework for data
importation and recoding. We are eager to have community feedback
about the variable key and the vignette about it. In version 1.67,
the function semTable() is deprecated. We have proposed a new package
of that name.
Author: Paul Johnson [aut, cre],
Benjamin Kite [aut],
Charles Redmon [aut],
Jared Harpole [ctb],
Kenna Whitley [ctb],
Po-Yi Chen [ctb],
Shadi Pirhosseinloo [ctb]
Maintainer: Paul Johnson <pauljohn@ku.edu>
Diff between kutils versions 1.67 dated 2019-03-03 and 1.69 dated 2019-05-12
DESCRIPTION | 12 ++++++------ MD5 | 12 ++++++------ R/importQualtrics.R | 2 +- inst/doc/variablekey.R | 8 ++++---- inst/doc/variablekey.Rnw | 35 ++++++++++++++++++++++------------- inst/doc/variablekey.pdf |binary vignettes/variablekey.Rnw | 35 ++++++++++++++++++++++------------- 7 files changed, 61 insertions(+), 43 deletions(-)