Title: Collecting Twitter Data
Description: An implementation of calls designed to collect and
organize Twitter data via Twitter's REST and stream Application
Program Interfaces (API), which can be found at the following URL:
<https://developer.twitter.com/en/docs>.
Author: Michael W. Kearney [aut, cre] (<https://orcid.org/0000-0002-0730-4694>)
Maintainer: Michael W. Kearney <kearneymw@missouri.edu>
Diff between rtweet versions 0.6.8 dated 2018-09-28 and 0.6.9 dated 2019-05-19
DESCRIPTION | 17 +- MD5 | 82 ++++++---- NAMESPACE | 6 NEWS.md | 24 +-- R/RcppExports.R |only R/followers.R | 8 + R/friends.R | 41 +++-- R/graph-network.R |only R/parse_twitter.R |only R/post.R | 72 ++++++--- R/premium.R |only R/retweets.R | 2 R/rtweet-package.R | 6 R/search_tweets.R | 83 +++++++++- R/stream.R | 75 ++++++++- R/timeline.R | 8 - R/tweet_shot.R | 4 R/tweets_and_users.R | 95 +++++++++--- R/utils.R | 83 ++++++++++ README.md | 107 ++++---------- build/vignette.rds |binary inst/CITATION | 8 - inst/doc/FAQ.html | 75 ++++++--- inst/doc/auth.R | 6 inst/doc/auth.Rmd | 8 - inst/doc/auth.html | 73 ++++++--- inst/doc/intro.html | 257 ++++++++++++++++++---------------- inst/doc/stream.html | 139 ++++++++++-------- man/get_followers.Rd | 5 man/get_friends.Rd | 5 man/get_retweeters.Rd | 2 man/get_timeline.Rd | 4 man/network_graph.Rd |only man/post_tweet.Rd | 33 ++-- man/search_30day.Rd |only man/search_fullarchive.Rd |only man/search_tweets.Rd | 43 +++-- man/stream_tweets.Rd | 2 src |only tests/testthat/g.rds |binary tests/testthat/test-access-level.R | 2 tests/testthat/test-graph.R |only tests/testthat/test_get_timelines.R | 3 tests/testthat/test_lookup_statuses.R | 2 tests/testthat/twitter_tokens |binary vignettes/auth.Rmd | 8 - 46 files changed, 885 insertions(+), 503 deletions(-)
Title: Latent Space Models for Multidimensional Networks
Description: Latent space models for multivariate networks (multiplex) estimated via MCMC algorithm. See D Angelo et al. (2018) <arXiv:1803.07166> and D Angelo et al. (2018) <arXiv:1807.03874>.
Author: Silvia D'Angelo [aut, cre],
Michael Fop [aut] (<https://orcid.org/0000-0003-3936-2757>),
Marco Alfò [ctb],
Thomas Brendan Murphy [ctb]
Maintainer: Silvia D'Angelo <silvia.dangelo@ucd.ie>
Diff between spaceNet versions 1.0.1 dated 2018-03-27 and 1.2 dated 2019-05-19
spaceNet-1.0.1/spaceNet/README.md |only spaceNet-1.2/spaceNet/DESCRIPTION | 23 spaceNet-1.2/spaceNet/MD5 | 25 spaceNet-1.2/spaceNet/NAMESPACE | 29 spaceNet-1.2/spaceNet/R/heuSearch.R |only spaceNet-1.2/spaceNet/R/initialize.R | 22 spaceNet-1.2/spaceNet/R/logPosterior.R | 175 +- spaceNet-1.2/spaceNet/R/multiNet.R | 1604 ++++++++++++------------ spaceNet-1.2/spaceNet/R/proposals.R | 1 spaceNet-1.2/spaceNet/R/utilities.R | 107 + spaceNet-1.2/spaceNet/man/alphaRef.Rd | 94 - spaceNet-1.2/spaceNet/man/heuSearch.Rd |only spaceNet-1.2/spaceNet/man/internal-functions.Rd | 52 spaceNet-1.2/spaceNet/man/multiNet.Rd | 350 ++--- spaceNet-1.2/spaceNet/man/spaceNet.Rd | 56 15 files changed, 1393 insertions(+), 1145 deletions(-)
Title: Latent Environmental & Genetic InTeraction (LEGIT) Model
Description: Constructs genotype x environment interaction (GxE) models where
G is a weighted sum of genetic variants (genetic score) and E is a weighted
sum of environments (environmental score) using the alternating optimization algorithm
by Jolicoeur-Martineau et al. (2017) <arXiv:1703.08111>. This approach has greatly
enhanced predictive power over traditional GxE models which include only a single
genetic variant and a single environmental exposure. Although this approach was
originally made for GxE modelling, it is flexible and does not require the use of
genetic and environmental variables. It can also handle more than 2 latent variables
(rather than just G and E) and 3-way interactions or more. The LEGIT model produces
highly interpretable results and is very parameter-efficient thus it can even be
used with small sample sizes (n < 250). Tools to determine the type of interaction
(vantage sensitivity, diathesis-stress or differential susceptibility), with any
number of genetic variants or environments, are available <arXiv:1712.04058>.
Author: Alexia Jolicoeur-Martineau <alexia.jolicoeur-martineau@mail.mcgill.ca>
Maintainer: Alexia Jolicoeur-Martineau <alexia.jolicoeur-martineau@mail.mcgill.ca>
Diff between LEGIT versions 1.2.2 dated 2018-06-21 and 1.2.3 dated 2019-05-19
DESCRIPTION | 11 MD5 | 38 +-- R/LEGIT.R | 6 build/vignette.rds |binary inst/doc/GxE_testing.Rmd | 266 +++++++++++------------ inst/doc/GxE_testing.html | 361 +++++++------------------------ inst/doc/LEGIT.Rmd | 498 ++++++++++++++++++++++---------------------- inst/doc/LEGIT.html | 408 +++++++++--------------------------- man/GxE_interaction_test.Rd | 13 - man/IMLEGIT.Rd | 5 man/backward_step_IM.Rd | 13 - man/bootstrap_var_select.Rd | 14 - man/forward_step.Rd | 11 man/forward_step_IM.Rd | 6 man/nes_var_select.Rd | 11 man/plot.LEGIT.Rd | 11 man/r1nes_var_select.Rd | 11 man/stepwise_search.Rd | 10 vignettes/GxE_testing.Rmd | 266 +++++++++++------------ vignettes/LEGIT.Rmd | 498 ++++++++++++++++++++++---------------------- 20 files changed, 1049 insertions(+), 1408 deletions(-)
Title: Simplifies Exploratory Data Analysis
Description: Interactive data exploration with one line of code or use a easy to remember set of tidy functions for exploratory data analysis. Introduces two main verbs. describe() to describe a variable or table, explore() to graphically explore a variable or table.
Author: Roland Krasser
Maintainer: Roland Krasser <roland.krasser@gmail.com>
Diff between explore versions 0.4.0 dated 2019-05-16 and 0.4.1 dated 2019-05-19
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ R/explore.R | 20 ++++++++++++-------- inst/doc/explore.R | 2 +- inst/doc/explore.Rmd | 6 +++--- inst/doc/explore.html | 10 +++++----- vignettes/explore.Rmd | 6 +++--- 7 files changed, 34 insertions(+), 30 deletions(-)
Title: Stepwise Elimination and Term Reordering for Mixed-Effects
Regression
Description: Finds the largest possible regression model that will still converge
for various types of regression analyses (including mixed models and generalized
additive models) and then optionally performs stepwise elimination similar to the
forward and backward effect selection methods in SAS, based on the change in
log-likelihood, Akaike's Information Criterion, or the Bayesian Information Criterion.
Author: Cesko C. Voeten [aut, cre]
Maintainer: Cesko C. Voeten <cvoeten@gmail.com>
Diff between buildmer versions 1.0 dated 2019-03-31 and 1.1 dated 2019-05-19
buildmer-1.0/buildmer/R/elimfuns.R |only buildmer-1.0/buildmer/inst/doc/buildmer.html |only buildmer-1.1/buildmer/ChangeLog |only buildmer-1.1/buildmer/DESCRIPTION | 14 buildmer-1.1/buildmer/MD5 | 61 +- buildmer-1.1/buildmer/NAMESPACE | 2 buildmer-1.1/buildmer/R/buildmer-S4.R | 7 buildmer-1.1/buildmer/R/buildmer-private.R | 171 +---- buildmer-1.1/buildmer/R/buildmer.R | 791 +++++++------------------- buildmer-1.1/buildmer/R/data.R | 6 buildmer-1.1/buildmer/R/directions.R | 99 +-- buildmer-1.1/buildmer/R/elim.R |only buildmer-1.1/buildmer/R/fitters.R |only buildmer-1.1/buildmer/R/patchers.R |only buildmer-1.1/buildmer/R/utility.R |only buildmer-1.1/buildmer/build/vignette.rds |binary buildmer-1.1/buildmer/data/migrant.RData |only buildmer-1.1/buildmer/inst/doc/buildmer.R | 98 +++ buildmer-1.1/buildmer/inst/doc/buildmer.Rmd | 111 +++ buildmer-1.1/buildmer/inst/doc/buildmer.pdf |only buildmer-1.1/buildmer/man/add.terms.Rd | 2 buildmer-1.1/buildmer/man/build.formula.Rd | 2 buildmer-1.1/buildmer/man/buildbam.Rd | 21 buildmer-1.1/buildmer/man/buildcustom.Rd |only buildmer-1.1/buildmer/man/buildgam.Rd | 25 buildmer-1.1/buildmer/man/buildgamm4.Rd | 35 - buildmer-1.1/buildmer/man/buildglmmTMB.Rd | 39 - buildmer-1.1/buildmer/man/buildgls.Rd | 25 buildmer-1.1/buildmer/man/buildjulia.Rd | 33 - buildmer-1.1/buildmer/man/buildlme.Rd | 23 buildmer-1.1/buildmer/man/buildmer.Rd | 37 - buildmer-1.1/buildmer/man/buildmultinom.Rd | 23 buildmer-1.1/buildmer/man/conv.Rd | 2 buildmer-1.1/buildmer/man/migrant.Rd |only buildmer-1.1/buildmer/man/remove.terms.Rd | 2 buildmer-1.1/buildmer/man/tabulate.formula.Rd | 2 buildmer-1.1/buildmer/vignettes/buildmer.Rmd | 111 +++ 37 files changed, 740 insertions(+), 1002 deletions(-)
Title: Linear Model Evaluation with Randomized Residuals in a
Permutation Procedure
Description: Linear model calculations are made for many random versions of data.
Using residual randomization in a permutation procedure, sums of squares are
calculated over many permutations to generate empirical probability distributions
for evaluating model effects. This packaged is described by
Collyer & Adams (2018) <doi:10.1111/2041-210X.13029>. Additionally, coefficients, statistics, fitted values, and residuals generated over many
permutations can be used for various procedures including pairwise tests, prediction, classification, and
model comparison. This package should provide most tools one could need for the analysis of
high-dimensional data, especially in ecology and evolutionary biology, but certainly other fields, as well.
Author: Michael Collyer, Dean Adams
Maintainer: Michael Collyer <mlcollyer@gmail.com>
Diff between RRPP versions 0.4.1 dated 2019-04-02 and 0.4.2 dated 2019-05-19
RRPP-0.4.1/RRPP/NEWS |only RRPP-0.4.2/RRPP/DESCRIPTION | 8 RRPP-0.4.2/RRPP/MD5 | 38 - RRPP-0.4.2/RRPP/NEWS.md |only RRPP-0.4.2/RRPP/R/RRPP.support.code.r | 89 +++- RRPP-0.4.2/RRPP/R/RRPP.utils.r | 3 RRPP-0.4.2/RRPP/R/anova.lm.rrpp.r | 17 RRPP-0.4.2/RRPP/R/lm.rrpp.r | 22 - RRPP-0.4.2/RRPP/R/manova.update.r | 9 RRPP-0.4.2/RRPP/R/model.comparison.r | 63 ++- RRPP-0.4.2/RRPP/R/pairwise.r | 11 RRPP-0.4.2/RRPP/R/shared.support.code.r | 13 RRPP-0.4.2/RRPP/R/trajectory.analysis.r | 17 RRPP-0.4.2/RRPP/build/vignette.rds |binary RRPP-0.4.2/RRPP/inst/doc/ANOVA.vs.MANOVA.html | 108 +++-- RRPP-0.4.2/RRPP/inst/doc/Using.RRPP.html | 498 ++++++++++++++------------ RRPP-0.4.2/RRPP/man/anova.lm.rrpp.Rd | 17 RRPP-0.4.2/RRPP/man/lm.rrpp.Rd | 22 - RRPP-0.4.2/RRPP/man/model.comparison.Rd | 25 + RRPP-0.4.2/RRPP/man/pairwise.Rd | 11 RRPP-0.4.2/RRPP/man/trajectory.analysis.Rd | 7 21 files changed, 612 insertions(+), 366 deletions(-)
Title: Meta-Analysis of Medians
Description: Implements several methods to meta-analyze studies that report the
sample median of the outcome. When the primary studies are one-group
studies, the methods of McGrath et al. (2019) <doi:10.1002/sim.8013> can
be applied to estimate the pooled median. In the two-group context, the
methods of McGrath et al. (2018) <arXiv:1809.01278> can be applied to
estimate the pooled raw difference of medians across groups.
Author: Sean McGrath [aut, cre] (<https://orcid.org/0000-0002-7281-3516>),
XiaoFei Zhao [aut],
Russell Steele [aut],
Andrea Benedetti [aut] (<https://orcid.org/0000-0002-8314-9497>)
Maintainer: Sean McGrath <sean.mcgrath@mail.mcgill.ca>
Diff between metamedian versions 0.1.3 dated 2019-03-09 and 0.1.4 dated 2019-05-19
metamedian-0.1.3/metamedian/R/qe.group.level.R |only metamedian-0.1.3/metamedian/man/metamedian-deprecated.Rd |only metamedian-0.1.3/metamedian/man/print.qe.fit.Rd |only metamedian-0.1.3/metamedian/man/qe.fit.Rd |only metamedian-0.1.4/metamedian/DESCRIPTION | 6 metamedian-0.1.4/metamedian/MD5 | 21 - metamedian-0.1.4/metamedian/NAMESPACE | 2 metamedian-0.1.4/metamedian/NEWS.md | 10 metamedian-0.1.4/metamedian/R/print.qe.fit.R | 57 ---- metamedian-0.1.4/metamedian/R/qe.R | 3 metamedian-0.1.4/metamedian/R/qe.fit.R | 212 --------------- metamedian-0.1.4/metamedian/R/qe.study.level.R | 75 +++-- metamedian-0.1.4/metamedian/man/metamedian-defunct.Rd |only metamedian-0.1.4/metamedian/man/qe.study.level.Rd | 4 14 files changed, 74 insertions(+), 316 deletions(-)
Title: Inventory Analytics and Cost Calculations
Description: Facilitate inventory analysis calculations,pricing and promotions calculations.
the package includes calculations of inventory metrics, profit calculations and ABC analysis calculations.
This version has only normal and Poisson distributions but I am hoping that other distributions will follow in later versions.
The functions are referenced from :
1-Harris, Ford W. (1913). "How many parts to make at once". Factory, The Magazine of Management. <isbn10: 135–136, 152>.
2- Nahmias, S. Production and Operations Analysis. McGraw-Hill International Edition. <isbn: 0-07- 2231265-3. Chapter 4>.
3-Silver, E.A., Pyke, D.F., Peterson, R. Inventory Management and Production Planning and Scheduling. <isbn: 978-0471119470>.
4-Ballou, R.H. Business Logistics Management. <isbn: 978-0130661845>. Chapter 9.
5-MIT Micromasters Program.
For further details or correspondence :<https://www.linkedin.com/in/haythamomar/>, <www.rescaleanalytics.com>.
Author: Haytham Omar [aut, cre]
Maintainer: Haytham Omar <haytham@rescaleanalytics.com>
Diff between inventorize versions 1.0.1 dated 2019-02-10 and 1.0.2 dated 2019-05-19
inventorize-1.0.1/inventorize/man/reorderpoint_ltv.Rd |only inventorize-1.0.1/inventorize/man/reorderpoint_normal.Rd |only inventorize-1.0.2/inventorize/DESCRIPTION | 6 +- inventorize-1.0.2/inventorize/MD5 | 24 +++++----- inventorize-1.0.2/inventorize/NAMESPACE | 5 +- inventorize-1.0.2/inventorize/R/elasticity.R | 6 +- inventorize-1.0.2/inventorize/R/profit_max.R | 23 ++++----- inventorize-1.0.2/inventorize/R/profit_max_withfixedcost.R |only inventorize-1.0.2/inventorize/R/reorderpoint_ltv.R | 6 +- inventorize-1.0.2/inventorize/R/reorderpoint_normal.R | 6 +- inventorize-1.0.2/inventorize/R/revenue_max.R | 21 ++++---- inventorize-1.0.2/inventorize/man/elasticity.Rd | 4 - inventorize-1.0.2/inventorize/man/profit_max_withfixedcost.Rd |only inventorize-1.0.2/inventorize/man/reorderpoint.Rd |only inventorize-1.0.2/inventorize/man/reorderpoint_leadtime_variability.Rd |only inventorize-1.0.2/inventorize/man/revenue_max.Rd | 6 +- 16 files changed, 54 insertions(+), 53 deletions(-)
Title: A Shiny App for UCSC Xena Database
Description: Provides a web app for downloading, analyzing and visualizing datasets
from UCSC Xena, which is a collection of
UCSC-hosted public databases such as TCGA, ICGC, TARGET, GTEx, CCLE, and others.
Author: Shixiang Wang [aut, cre] (<https://orcid.org/0000-0001-9855-7357>),
Yi Xiong [aut] (<https://orcid.org/0000-0002-4370-9824>),
Longfei Zhao [aut] (<https://orcid.org/0000-0002-6277-0137>),
Kai Gu [aut] (<https://orcid.org/0000-0002-0177-0774>),
Yin Li [aut],
Fei Zhao [aut]
Maintainer: Shixiang Wang <w_shixiang@163.com>
Diff between UCSCXenaShiny versions 0.1.0 dated 2019-05-09 and 0.1.1 dated 2019-05-19
DESCRIPTION | 8 ++++---- MD5 | 14 ++++++++------ NAMESPACE | 1 - NEWS.md | 6 ++++++ R/run.R | 13 ------------- README.md | 9 +++++++++ inst/shinyapp/App.R | 17 ++++++++++++++++- tests |only 8 files changed, 43 insertions(+), 25 deletions(-)
Title: Maximum Likelihood Estimation and Related Tools
Description: Functions for Maximum Likelihood (ML) estimation and non-linear
optimization, and related tools. It includes a unified way to call
different optimizers, and classes and methods to handle the results from
the ML viewpoint. It also includes a number of convenience tools for testing
and developing your own models.
Author: Ott Toomet <otoomet@gmail.com>,
Arne Henningsen <arne.henningsen@gmail.com>,
with contributions from Spencer Graves and Yves Croissant
Maintainer: Ott Toomet <otoomet@gmail.com>
Diff between maxLik versions 1.3-4 dated 2015-11-09 and 1.3-6 dated 2019-05-19
maxLik-1.3-4/maxLik/man/estfun.maxLik.Rd |only maxLik-1.3-4/maxLik/tests/examples.R |only maxLik-1.3-4/maxLik/tests/examples.Rout.save |only maxLik-1.3-4/maxLik/tests/fitGammaDist.R |only maxLik-1.3-4/maxLik/tests/fitGammaDist.Rout.save |only maxLik-1.3-6/maxLik/DESCRIPTION | 10 maxLik-1.3-6/maxLik/MD5 | 53 - maxLik-1.3-6/maxLik/NAMESPACE | 6 maxLik-1.3-6/maxLik/NEWS | 4 maxLik-1.3-6/maxLik/R/gradient.R |only maxLik-1.3-6/maxLik/R/logLik.maxLik.R | 14 maxLik-1.3-6/maxLik/R/logLikAttr.R | 6 maxLik-1.3-6/maxLik/R/maxBFGSR.R | 1 maxLik-1.3-6/maxLik/R/maxNR.R | 4 maxLik-1.3-6/maxLik/R/maxOptim.R | 2 maxLik-1.3-6/maxLik/R/maxValue.R |only maxLik-1.3-6/maxLik/R/objectiveFn.R |only maxLik-1.3-6/maxLik/R/stdEr.maxLik.R | 10 maxLik-1.3-6/maxLik/R/summary.maxLik.R | 8 maxLik-1.3-6/maxLik/man/gradient.Rd |only maxLik-1.3-6/maxLik/man/logLik.maxLik.Rd | 3 maxLik-1.3-6/maxLik/man/maxBFGS.Rd | 37 maxLik-1.3-6/maxLik/man/maxNR.Rd | 32 maxLik-1.3-6/maxLik/man/maxValue.Rd |only maxLik-1.3-6/maxLik/man/objectiveFn.Rd |only maxLik-1.3-6/maxLik/tests/BFGSR.R | 37 maxLik-1.3-6/maxLik/tests/BFGSR.Rout.save | 109 -- maxLik-1.3-6/maxLik/tests/basicTest.R |only maxLik-1.3-6/maxLik/tests/basicTest.Rout.save |only maxLik-1.3-6/maxLik/tests/constraints.R | 171 ++-- maxLik-1.3-6/maxLik/tests/constraints.Rout.save | 312 +++---- maxLik-1.3-6/maxLik/tests/fitNormalDist_privateTest.Rout.save | 411 ++++++---- maxLik-1.3-6/maxLik/tests/methods.R | 42 - maxLik-1.3-6/maxLik/tests/methods.Rout.save | 48 + 34 files changed, 733 insertions(+), 587 deletions(-)
Title: A Pipeline Toolkit for Reproducible Computation at Scale
Description: A general-purpose computational engine for data analysis,
drake rebuilds intermediate data objects when their dependencies change,
and it skips work when the results are already up to date.
Not every execution starts from scratch,
there is native support for parallel and distributed computing,
and completed projects have tangible evidence
that they are reproducible.
Extensive documentation, from beginner-friendly tutorials
to practical examples and more, is available at the reference website
<https://ropensci.github.io/drake/> and the online manual
<https://ropenscilabs.github.io/drake-manual/>.
Author: William Michael Landau [aut, cre]
(<https://orcid.org/0000-0003-1878-3253>),
Alex Axthelm [ctb],
Jasper Clarkberg [ctb],
Kirill Müller [ctb],
Ben Bond-Lamberty [ctb] (<https://orcid.org/0000-0001-9525-4633>),
Tristan Mahr [ctb] (<https://orcid.org/0000-0002-8890-5116>),
Miles McBain [ctb] (<https://orcid.org/0000-0003-2865-2548>),
Ben Marwick [rev],
Peter Slaughter [rev],
Eli Lilly and Company [cph]
Maintainer: William Michael Landau <will.landau@gmail.com>
Diff between drake versions 7.2.0 dated 2019-04-19 and 7.3.0 dated 2019-05-19
drake-7.2.0/drake/R/api-mapreduce.R |only drake-7.2.0/drake/R/api-wildcards.R |only drake-7.2.0/drake/tests/scenarios/tests-separate.Rout |only drake-7.2.0/drake/tests/testthat/test-map-reduce.R |only drake-7.2.0/drake/tests/testthat/test-wildcards.R |only drake-7.3.0/drake/DESCRIPTION | 16 drake-7.3.0/drake/MD5 | 134 +- drake-7.3.0/drake/NAMESPACE | 3 drake-7.3.0/drake/NEWS.md | 28 drake-7.3.0/drake/R/api-cache.R | 5 drake-7.3.0/drake/R/api-callr.R | 36 drake-7.3.0/drake/R/api-codetoplan.R | 30 drake-7.3.0/drake/R/api-dsl.R | 66 - drake-7.3.0/drake/R/api-examples.R | 9 drake-7.3.0/drake/R/api-make.R | 12 drake-7.3.0/drake/R/api-plan.R | 37 drake-7.3.0/drake/R/backend-clustermq.R | 45 drake-7.3.0/drake/R/backend-future.R | 10 drake-7.3.0/drake/R/backend-loop.R | 2 drake-7.3.0/drake/R/exec-session.R | 1 drake-7.3.0/drake/R/exec-standardize.R | 1 drake-7.3.0/drake/R/preprocess-codeanalysis.R | 2 drake-7.3.0/drake/R/test-testthat.R | 2 drake-7.3.0/drake/R/utils-defunct.R | 21 drake-7.3.0/drake/R/utils-deprecate.R | 1033 +++++++++++++++-- drake-7.3.0/drake/R/utils-zzz.R | 46 drake-7.3.0/drake/R/vis-ggraph.R | 2 drake-7.3.0/drake/R/vis-sankey.R | 2 drake-7.3.0/drake/R/vis-txtplot.R |only drake-7.3.0/drake/R/vis-visnetwork.R | 2 drake-7.3.0/drake/README.md | 712 +++++++---- drake-7.3.0/drake/build/vignette.rds |binary drake-7.3.0/drake/inst/WORDLIST | 10 drake-7.3.0/drake/inst/doc/drake.Rmd | 78 - drake-7.3.0/drake/inst/doc/drake.html | 330 +++-- drake-7.3.0/drake/man/clean_main_example.Rd | 2 drake-7.3.0/drake/man/code_to_plan.Rd | 4 drake-7.3.0/drake/man/deps.Rd | 27 drake-7.3.0/drake/man/drake_example.Rd | 9 drake-7.3.0/drake/man/drake_ggraph.Rd | 2 drake-7.3.0/drake/man/drake_plan.Rd | 19 drake-7.3.0/drake/man/evaluate_plan.Rd | 13 drake-7.3.0/drake/man/expand_plan.Rd | 13 drake-7.3.0/drake/man/gather_by.Rd | 14 drake-7.3.0/drake/man/gather_plan.Rd | 14 drake-7.3.0/drake/man/get_cache.Rd | 5 drake-7.3.0/drake/man/load_main_example.Rd | 2 drake-7.3.0/drake/man/make.Rd | 12 drake-7.3.0/drake/man/map_plan.Rd | 14 drake-7.3.0/drake/man/max_useful_jobs.Rd | 36 drake-7.3.0/drake/man/migrate_drake_project.Rd | 19 drake-7.3.0/drake/man/plan_to_code.Rd | 4 drake-7.3.0/drake/man/plan_to_notebook.Rd | 2 drake-7.3.0/drake/man/r_make.Rd | 8 drake-7.3.0/drake/man/recover_cache.Rd | 5 drake-7.3.0/drake/man/reduce_by.Rd | 13 drake-7.3.0/drake/man/reduce_plan.Rd | 14 drake-7.3.0/drake/man/render_static_drake_graph.Rd | 2 drake-7.3.0/drake/man/render_text_drake_graph.Rd |only drake-7.3.0/drake/man/sankey_drake_graph.Rd | 2 drake-7.3.0/drake/man/static_drake_graph.Rd | 2 drake-7.3.0/drake/man/text_drake_graph.Rd |only drake-7.3.0/drake/man/vis_drake_graph.Rd | 2 drake-7.3.0/drake/tests/testthat/test-clustermq.R | 96 + drake-7.3.0/drake/tests/testthat/test-deprecate.R | 887 ++++++++++++++ drake-7.3.0/drake/tests/testthat/test-dsl.R | 197 +++ drake-7.3.0/drake/tests/testthat/test-edge-cases.R | 27 drake-7.3.0/drake/tests/testthat/test-graph.R | 16 drake-7.3.0/drake/tests/testthat/test-other-features.R | 6 drake-7.3.0/drake/tests/testthat/test-plans.R | 3 drake-7.3.0/drake/tests/testthat/test-zzz-callr.R | 2 drake-7.3.0/drake/vignettes/drake.Rmd | 78 - 72 files changed, 3206 insertions(+), 1040 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-07-12 1.0.1
2014-11-03 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-04-13 0.0.4
2018-03-10 0.0.3
2017-08-28 0.0.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-01-06 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-03-31 1.0.0
2014-09-16 0.3.17
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-06-27 0.8.0
2018-01-02 0.7.0
2017-09-20 0.5.2
2017-05-28 0.5.1
2017-03-14 0.4.0
2017-02-09 0.3.0
2016-12-15 0.2.1
2016-11-22 0.2.0
2016-08-07 0.1.0
2016-03-02 0.0.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-10-14 0.3.1
2017-07-15 0.3.0
2015-12-18 0.2
2013-08-16 0.1
2013-05-16 0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-03-21 0.1-1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-12-17 1.0
Title: Tools for Model Specification in the Latent Variable Framework
Description: Tools for model specification in the latent variable framework
(add-on to the 'lava' package). The package contains three main functionalities:
Wald tests/F-tests with improved control of the type 1 error in small samples,
adjustment for multiple comparisons when searching for local dependencies,
and adjustment for multiple comparisons when doing inference for multiple latent variable models.
Author: Brice Ozenne [aut, cre] (<https://orcid.org/0000-0001-9694-2956>)
Maintainer: Brice Ozenne <brice.mh.ozenne@gmail.com>
Diff between lavaSearch2 versions 1.5.3 dated 2019-03-18 and 1.5.4 dated 2019-05-19
lavaSearch2-1.5.3/lavaSearch2/inst/demoGLS.R |only lavaSearch2-1.5.3/lavaSearch2/inst/implementationScheme.png |only lavaSearch2-1.5.3/lavaSearch2/inst/implementationScheme.svg |only lavaSearch2-1.5.3/lavaSearch2/inst/tests |only lavaSearch2-1.5.3/lavaSearch2/inst/todo.org |only lavaSearch2-1.5.4/lavaSearch2/DESCRIPTION | 8 lavaSearch2-1.5.4/lavaSearch2/MD5 | 289 - lavaSearch2-1.5.4/lavaSearch2/NAMESPACE | 504 - lavaSearch2-1.5.4/lavaSearch2/NEWS | 166 lavaSearch2-1.5.4/lavaSearch2/R/0onload.R | 42 lavaSearch2-1.5.4/lavaSearch2/R/IntDensTri.R | 550 +- lavaSearch2-1.5.4/lavaSearch2/R/RcppExports.R | 22 lavaSearch2-1.5.4/lavaSearch2/R/Utils-formula.R | 410 - lavaSearch2-1.5.4/lavaSearch2/R/Utils-nlme.R | 1054 +-- lavaSearch2-1.5.4/lavaSearch2/R/autoplot.calibrateType1.R | 314 - lavaSearch2-1.5.4/lavaSearch2/R/calcDistMax.R | 840 +-- lavaSearch2-1.5.4/lavaSearch2/R/calcType1postSelection.R | 326 - lavaSearch2-1.5.4/lavaSearch2/R/calibrateType1.R | 1488 ++--- lavaSearch2-1.5.4/lavaSearch2/R/checkData.R | 194 lavaSearch2-1.5.4/lavaSearch2/R/clean.R | 196 lavaSearch2-1.5.4/lavaSearch2/R/coefByType.R | 672 +- lavaSearch2-1.5.4/lavaSearch2/R/coefType.R | 782 +- lavaSearch2-1.5.4/lavaSearch2/R/compare2.R | 1110 ++-- lavaSearch2-1.5.4/lavaSearch2/R/conditionalMoment.R | 826 +-- lavaSearch2-1.5.4/lavaSearch2/R/createContrast.R | 788 +- lavaSearch2-1.5.4/lavaSearch2/R/createGrid.R | 384 - lavaSearch2-1.5.4/lavaSearch2/R/defineCategoricalLink.R | 334 - lavaSearch2-1.5.4/lavaSearch2/R/effects2.R | 324 - lavaSearch2-1.5.4/lavaSearch2/R/estimate2.R | 1098 ++-- lavaSearch2-1.5.4/lavaSearch2/R/getVarCov2.R | 378 - lavaSearch2-1.5.4/lavaSearch2/R/iidJack.R | 634 +- lavaSearch2-1.5.4/lavaSearch2/R/information2.R | 1070 ++-- lavaSearch2-1.5.4/lavaSearch2/R/initVarlink.R | 262 lavaSearch2-1.5.4/lavaSearch2/R/lavaSearch2-package.R | 150 lavaSearch2-1.5.4/lavaSearch2/R/leverage.R | 252 lavaSearch2-1.5.4/lavaSearch2/R/link.R | 684 +- lavaSearch2-1.5.4/lavaSearch2/R/matrixPower.R | 180 lavaSearch2-1.5.4/lavaSearch2/R/methods-modelsearch2.R | 646 +- lavaSearch2-1.5.4/lavaSearch2/R/modelsearch2.R | 1292 ++-- lavaSearch2-1.5.4/lavaSearch2/R/multcomp.R | 958 +-- lavaSearch2-1.5.4/lavaSearch2/R/nobs.R | 48 lavaSearch2-1.5.4/lavaSearch2/R/package-butils-evalInParentEnv.R | 110 lavaSearch2-1.5.4/lavaSearch2/R/package-butils-extractData.R | 496 - lavaSearch2-1.5.4/lavaSearch2/R/package-butils-valid.R | 856 +-- lavaSearch2-1.5.4/lavaSearch2/R/prepareScore2.R | 42 lavaSearch2-1.5.4/lavaSearch2/R/print.modelsearch2.R | 56 lavaSearch2-1.5.4/lavaSearch2/R/residuals2.R | 246 lavaSearch2-1.5.4/lavaSearch2/R/sCorrect.R | 1887 +++---- lavaSearch2-1.5.4/lavaSearch2/R/score2.R | 378 - lavaSearch2-1.5.4/lavaSearch2/R/skeleton.R | 2650 +++++----- lavaSearch2-1.5.4/lavaSearch2/R/summary.calibrateType1.R | 320 - lavaSearch2-1.5.4/lavaSearch2/R/summary.glht2.R | 98 lavaSearch2-1.5.4/lavaSearch2/R/summary.modelsearch2.R | 164 lavaSearch2-1.5.4/lavaSearch2/R/summary2.R | 590 +- lavaSearch2-1.5.4/lavaSearch2/R/symmetrize.R | 98 lavaSearch2-1.5.4/lavaSearch2/R/tryWithWarnings.R | 130 lavaSearch2-1.5.4/lavaSearch2/R/var2dummy.R | 216 lavaSearch2-1.5.4/lavaSearch2/R/vcov2.R | 248 lavaSearch2-1.5.4/lavaSearch2/build/vignette.rds |binary lavaSearch2-1.5.4/lavaSearch2/inst/doc/overview.ltx | 2357 ++++---- lavaSearch2-1.5.4/lavaSearch2/inst/doc/overview.pdf |binary lavaSearch2-1.5.4/lavaSearch2/man/addLink.Rd | 118 lavaSearch2-1.5.4/lavaSearch2/man/autoplot.intDensTri.Rd | 54 lavaSearch2-1.5.4/lavaSearch2/man/autoplot.modelsearch2.Rd | 110 lavaSearch2-1.5.4/lavaSearch2/man/autoplot_calibrateType1.Rd | 132 lavaSearch2-1.5.4/lavaSearch2/man/calcDistMax.Rd | 240 lavaSearch2-1.5.4/lavaSearch2/man/calcType1postSelection.Rd | 188 lavaSearch2-1.5.4/lavaSearch2/man/calibrateType1.Rd | 236 lavaSearch2-1.5.4/lavaSearch2/man/checkData.Rd | 80 lavaSearch2-1.5.4/lavaSearch2/man/clean.Rd | 92 lavaSearch2-1.5.4/lavaSearch2/man/coef2-internal.Rd | 82 lavaSearch2-1.5.4/lavaSearch2/man/coefByType.Rd | 350 - lavaSearch2-1.5.4/lavaSearch2/man/coefType.Rd | 216 lavaSearch2-1.5.4/lavaSearch2/man/combination.Rd | 58 lavaSearch2-1.5.4/lavaSearch2/man/combineFormula.Rd | 66 lavaSearch2-1.5.4/lavaSearch2/man/compare2.Rd | 278 - lavaSearch2-1.5.4/lavaSearch2/man/conditionalMoment.Rd | 190 lavaSearch2-1.5.4/lavaSearch2/man/contrast2name.Rd | 48 lavaSearch2-1.5.4/lavaSearch2/man/convFormulaCharacter.Rd | 42 lavaSearch2-1.5.4/lavaSearch2/man/createContrast.Rd | 220 lavaSearch2-1.5.4/lavaSearch2/man/createGrid.Rd | 162 lavaSearch2-1.5.4/lavaSearch2/man/dInformation2-internal.Rd | 36 lavaSearch2-1.5.4/lavaSearch2/man/defineCategoricalLink.Rd | 118 lavaSearch2-1.5.4/lavaSearch2/man/dfSigma.Rd | 42 lavaSearch2-1.5.4/lavaSearch2/man/dfSigmaRobust.Rd | 56 lavaSearch2-1.5.4/lavaSearch2/man/effects2.Rd | 68 lavaSearch2-1.5.4/lavaSearch2/man/estfun.Rd | 124 lavaSearch2-1.5.4/lavaSearch2/man/estimate2.Rd | 34 lavaSearch2-1.5.4/lavaSearch2/man/evalInParentEnv.Rd | 32 lavaSearch2-1.5.4/lavaSearch2/man/extractData.Rd | 196 lavaSearch2-1.5.4/lavaSearch2/man/findNewLink.Rd | 132 lavaSearch2-1.5.4/lavaSearch2/man/getCluster2-internal.Rd | 74 lavaSearch2-1.5.4/lavaSearch2/man/getIndexOmega2-internal.Rd | 96 lavaSearch2-1.5.4/lavaSearch2/man/getNewLink.Rd | 78 lavaSearch2-1.5.4/lavaSearch2/man/getNewModel.Rd | 80 lavaSearch2-1.5.4/lavaSearch2/man/getStep.Rd | 80 lavaSearch2-1.5.4/lavaSearch2/man/getVarCov2-internal.Rd | 78 lavaSearch2-1.5.4/lavaSearch2/man/getVarCov2.Rd | 204 lavaSearch2-1.5.4/lavaSearch2/man/glht2.Rd | 172 lavaSearch2-1.5.4/lavaSearch2/man/iid2.Rd | 194 lavaSearch2-1.5.4/lavaSearch2/man/iidJack.Rd | 230 lavaSearch2-1.5.4/lavaSearch2/man/information2-internal.Rd | 58 lavaSearch2-1.5.4/lavaSearch2/man/information2.Rd | 140 lavaSearch2-1.5.4/lavaSearch2/man/initVarLink.Rd | 118 lavaSearch2-1.5.4/lavaSearch2/man/intDensTri.Rd | 228 lavaSearch2-1.5.4/lavaSearch2/man/lavaSearch2.Rd | 112 lavaSearch2-1.5.4/lavaSearch2/man/leverage2.Rd | 166 lavaSearch2-1.5.4/lavaSearch2/man/matrixPower.Rd | 104 lavaSearch2-1.5.4/lavaSearch2/man/modelsearch2.Rd | 248 lavaSearch2-1.5.4/lavaSearch2/man/nStep.Rd | 72 lavaSearch2-1.5.4/lavaSearch2/man/residuals2.Rd | 168 lavaSearch2-1.5.4/lavaSearch2/man/sCorrect.Rd | 271 - lavaSearch2-1.5.4/lavaSearch2/man/score2-internal.Rd | 34 lavaSearch2-1.5.4/lavaSearch2/man/score2.Rd | 168 lavaSearch2-1.5.4/lavaSearch2/man/selectRegressor.Rd | 82 lavaSearch2-1.5.4/lavaSearch2/man/selectResponse.Rd | 90 lavaSearch2-1.5.4/lavaSearch2/man/setLink.Rd | 92 lavaSearch2-1.5.4/lavaSearch2/man/skeleton.Rd | 270 - lavaSearch2-1.5.4/lavaSearch2/man/summary.calibrateType1.Rd | 62 lavaSearch2-1.5.4/lavaSearch2/man/summary.modelsearch2.Rd | 44 lavaSearch2-1.5.4/lavaSearch2/man/summary2.Rd | 194 lavaSearch2-1.5.4/lavaSearch2/man/symmetrize.Rd | 58 lavaSearch2-1.5.4/lavaSearch2/man/tryWithWarnings.Rd | 68 lavaSearch2-1.5.4/lavaSearch2/man/validFCTs.Rd | 200 lavaSearch2-1.5.4/lavaSearch2/man/var2dummy.Rd | 96 lavaSearch2-1.5.4/lavaSearch2/man/vcov2.Rd | 166 lavaSearch2-1.5.4/lavaSearch2/tests/test-all.R | 6 lavaSearch2-1.5.4/lavaSearch2/tests/testthat/test-coefType.R | 590 +- lavaSearch2-1.5.4/lavaSearch2/tests/testthat/test-initVar.R | 130 lavaSearch2-1.5.4/lavaSearch2/tests/testthat/test-matrixPower.R | 90 lavaSearch2-1.5.4/lavaSearch2/tests/testthat/test1-Utils-nlme.R | 508 - lavaSearch2-1.5.4/lavaSearch2/tests/testthat/test1-adjustMoment.R | 288 - lavaSearch2-1.5.4/lavaSearch2/tests/testthat/test1-cluster-lava.R | 120 lavaSearch2-1.5.4/lavaSearch2/tests/testthat/test1-compare2.R | 778 +- lavaSearch2-1.5.4/lavaSearch2/tests/testthat/test1-sCorrect-adjustedResiduals.R | 330 - lavaSearch2-1.5.4/lavaSearch2/tests/testthat/test1-sCorrect-dVcov.R | 1008 +-- lavaSearch2-1.5.4/lavaSearch2/tests/testthat/test1-sCorrect-lava.R | 1670 +++--- lavaSearch2-1.5.4/lavaSearch2/tests/testthat/test1-sCorrect-missingValues.R | 280 - lavaSearch2-1.5.4/lavaSearch2/tests/testthat/test1-sCorrect-smallSampleCorrection.R | 644 +- lavaSearch2-1.5.4/lavaSearch2/tests/testthat/test1-sCorrect-summary2.R | 1822 +++--- lavaSearch2-1.5.4/lavaSearch2/tests/testthat/test1-sCorrect-validObjects.R | 226 lavaSearch2-1.5.4/lavaSearch2/tests/testthat/test2-IntDensTri.R | 178 lavaSearch2-1.5.4/lavaSearch2/tests/testthat/test2-calcType1postSelection.R | 164 lavaSearch2-1.5.4/lavaSearch2/tests/testthat/test2-modelsearch2.R | 110 lavaSearch2-1.5.4/lavaSearch2/tests/testthat/test3-multcomp.R | 428 - lavaSearch2-1.5.4/lavaSearch2/vignettes/changes.sty | 1054 +-- lavaSearch2-1.5.4/lavaSearch2/vignettes/overview.ltx | 2357 ++++---- lavaSearch2-1.5.4/lavaSearch2/vignettes/overview.org | 2147 ++++---- 148 files changed, 26789 insertions(+), 26751 deletions(-)
Title: R Interface to the 'QuantLib' Library
Description: The 'RQuantLib' package makes parts of 'QuantLib' accessible from R
The 'QuantLib' project aims to provide a comprehensive software framework
for quantitative finance. The goal is to provide a standard open source library
for quantitative analysis, modeling, trading, and risk management of financial
assets.
Author: Dirk Eddelbuettel, Khanh Nguyen (2009-2010), Terry Leitch (since 2016)
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RQuantLib versions 0.4.8 dated 2019-03-17 and 0.4.9 dated 2019-05-19
ChangeLog | 17 ++++++++- DESCRIPTION | 8 ++-- MD5 | 18 +++++----- configure | 18 +++++----- configure.ac | 2 - inst/NEWS.Rd | 10 +++++ inst/include/rquantlib_internal.h | 68 +++++++++++++++++++------------------- src/asian.cpp | 8 ++-- src/bermudan.cpp | 48 +++++++++++++------------- src/calendars.cpp | 22 ++++++------ 10 files changed, 122 insertions(+), 97 deletions(-)
Title: Music Chords Extraction
Description: Extracts music chords from the 'CifraClub' website <https://www.cifraclub.com.br/>.
The package also has functions for cleaning the extracted data and
feature extraction.
Author: Bruna Wundervald
Maintainer: Bruna Wundervald <brunadaviesw@gmail.com>
Diff between chorrrds versions 0.1.9 dated 2019-04-19 and 0.1.9.1 dated 2019-05-19
DESCRIPTION | 6 +++--- MD5 | 4 ++-- R/feature_extraction.R | 4 ++-- 3 files changed, 7 insertions(+), 7 deletions(-)
Title: Visualization of a Correlation Matrix using 'ggplot2'
Description: The 'ggcorrplot' package can be used to visualize easily a
correlation matrix using 'ggplot2'. It provides a solution for reordering the
correlation matrix and displays the significance level on the plot. It also
includes a function for computing a matrix of correlation p-values.
Author: Alboukadel Kassambara [aut, cre]
Maintainer: Alboukadel Kassambara <alboukadel.kassambara@gmail.com>
Diff between ggcorrplot versions 0.1.2 dated 2018-09-11 and 0.1.3 dated 2019-05-19
DESCRIPTION | 14 +-- MD5 | 29 +++--- NEWS.md |only R/ggcorrplot.R | 167 +++++++++++++++++++++++++++---------- README.md | 58 ++++++++---- inst |only man/ggcorrplot.Rd | 28 +++--- tests |only tools/README-demo-ggcorrplot-1.png |binary tools/README-demo-ggcorrplot-2.png |binary tools/README-demo-ggcorrplot-3.png |binary tools/README-demo-ggcorrplot-4.png |binary tools/README-demo-ggcorrplot-5.png |binary tools/README-demo-ggcorrplot-6.png |binary tools/README-demo-ggcorrplot-7.png |binary tools/README-demo-ggcorrplot-8.png |binary tools/README-demo-ggcorrplot-9.png |binary 17 files changed, 207 insertions(+), 89 deletions(-)
Title: Adrian Dusa's Miscellaneous
Description: Contains functions used across packages 'QCA', 'DDIwR', and 'venn'.
Interprets and translates DNF - Disjunctive Normal Form expressions, for both
binary and multi-value crisp sets, and extracts information (set names, set
values) from those expressions. Other functions perform various other checks
if possibly numeric (even if all numbers reside in a character vector) and
coerce to numeric, or check if the numbers are whole. It also offers, among
many others, a highly flexible recoding function.
Author: Adrian Dusa [aut, cre, cph]
Maintainer: Adrian Dusa <dusa.adrian@unibuc.ro>
Diff between admisc versions 0.1 dated 2019-04-26 and 0.2 dated 2019-05-19
admisc-0.1/admisc/R/combinations.R |only admisc-0.1/admisc/man/combinations.Rd |only admisc-0.2/admisc/DESCRIPTION | 8 admisc-0.2/admisc/MD5 | 28 +-- admisc-0.2/admisc/NAMESPACE | 21 +- admisc-0.2/admisc/R/brackets.R | 110 +++++++++++ admisc-0.2/admisc/R/checkSubset.R |only admisc-0.2/admisc/R/combnk.R |only admisc-0.2/admisc/R/sortExpressions.R |only admisc-0.2/admisc/R/string.R | 289 +++++++++++++++++++++++++++++++ admisc-0.2/admisc/R/translate.R | 77 ++++---- admisc-0.2/admisc/inst/ChangeLog | 3 admisc-0.2/admisc/man/admisc-internal.Rd | 16 + admisc-0.2/admisc/man/admisc.package.Rd | 6 admisc-0.2/admisc/man/brackets.Rd | 17 - admisc-0.2/admisc/man/combnk.Rd |only admisc-0.2/admisc/man/tildae.Rd | 10 - admisc-0.2/admisc/man/translate.Rd | 16 - 18 files changed, 520 insertions(+), 81 deletions(-)
Title: Bridge Between 'R' and 'Scala' with Callbacks
Description: 'Scala' <http://www.scala-lang.org/> is embedded in 'R' and callbacks from 'Scala' to 'R' are available. Support is provided to write 'R' packages that access 'Scala'. After installation, please run 'rscala::scalaConfig()'.
Author: David B. Dahl [aut, cre]
Maintainer: David B. Dahl <dahl@stat.byu.edu>
Diff between rscala versions 3.2.8 dated 2019-05-12 and 3.2.9 dated 2019-05-19
rscala-3.2.8/rscala/inst/java/scala-2.11/rscala_2.11-3.2.8.jar |only rscala-3.2.8/rscala/inst/java/scala-2.12/rscala_2.12-3.2.8.jar |only rscala-3.2.8/rscala/inst/java/scala-2.13.0-RC1 |only rscala-3.2.8/rscala/java/rscala_2.12-3.2.8-sources.jar |only rscala-3.2.9/rscala/DESCRIPTION | 8 ++-- rscala-3.2.9/rscala/MD5 | 20 +++++----- rscala-3.2.9/rscala/NEWS | 8 ++++ rscala-3.2.9/rscala/R/scala.R | 2 - rscala-3.2.9/rscala/R/scalaConfig.R | 15 +++++-- rscala-3.2.9/rscala/README.md | 2 - rscala-3.2.9/rscala/inst/doc/rscala.pdf |binary rscala-3.2.9/rscala/inst/java/scala-2.11/rscala_2.11-3.2.9.jar |only rscala-3.2.9/rscala/inst/java/scala-2.12/rscala_2.12-3.2.9.jar |only rscala-3.2.9/rscala/inst/java/scala-2.13.0-RC2 |only rscala-3.2.9/rscala/java/rscala_2.12-3.2.9-sources.jar |only 15 files changed, 35 insertions(+), 20 deletions(-)
Title: Regularized Linear Models
Description: Algorithms for fitting model-based penalized coefficient paths. Currently the models include penalized Poisson, negative binomial, zero-inflated Poisson and zero-inflated negative binomial regression models. The penalties include least absolute shrinkage and selection operator (LASSO), smoothly clipped absolute deviation (SCAD) and minimax concave penalty (MCP), and each possibly combining with L_2 penalty.
See Wang et al. (2014) <doi:10.1002/sim.6314>, Wang et al. (2015) <doi:10.1002/bimj.201400143>,
Wang et al. (2016) <doi:10.1177/0962280214530608>.
Author: Zhu Wang, with contributions from Achim Zeileis, Simon Jackman, Brian Ripley, Trevor Hastie, Rob Tibshirani, Balasubramanian Narasimhan, Gil Chu and Patrick Breheny
Maintainer: Zhu Wang <wangz1@uthscsa.edu>
Diff between mpath versions 0.3-12 dated 2019-04-15 and 0.3-13 dated 2019-05-19
mpath-0.3-12/mpath/src/zi.f |only mpath-0.3-13/mpath/DESCRIPTION | 8 mpath-0.3-13/mpath/MD5 | 97 ++++++----- mpath-0.3-13/mpath/NAMESPACE | 8 mpath-0.3-13/mpath/NEWS | 9 - mpath-0.3-13/mpath/R/cv.glmreg.R | 25 ++ mpath-0.3-13/mpath/R/cv.glmregNegbin.R | 17 +- mpath-0.3-13/mpath/R/cv.nclreg.R | 14 + mpath-0.3-13/mpath/R/cv.zipath.R | 126 ++++++++++++-- mpath-0.3-13/mpath/R/glmreg.R | 11 - mpath-0.3-13/mpath/R/loglik.R | 20 +- mpath-0.3-13/mpath/R/ncl.R | 9 - mpath-0.3-13/mpath/R/nclreg.R | 95 ++++++++--- mpath-0.3-13/mpath/R/zipath.R | 190 ++++++++++++---------- mpath-0.3-13/mpath/build/vignette.rds |binary mpath-0.3-13/mpath/inst/doc/brcancer.R | 170 +++++++++----------- mpath-0.3-13/mpath/inst/doc/brcancer.Rnw | 190 +++++++++++----------- mpath-0.3-13/mpath/inst/doc/brcancer.pdf |binary mpath-0.3-13/mpath/inst/doc/german.R | 6 mpath-0.3-13/mpath/inst/doc/german.Rnw | 12 - mpath-0.3-13/mpath/inst/doc/german.pdf |binary mpath-0.3-13/mpath/inst/doc/kkt.pdf |binary mpath-0.3-13/mpath/inst/doc/static_brcancer.pdf |binary mpath-0.3-13/mpath/inst/doc/static_german.pdf |binary mpath-0.3-13/mpath/man/cv.glmregNB.Rd | 8 mpath-0.3-13/mpath/man/cv.glmreg_fit.Rd | 8 mpath-0.3-13/mpath/man/cv.nclreg_fit.Rd | 5 mpath-0.3-13/mpath/man/cv.zipath.Rd | 33 ++- mpath-0.3-13/mpath/man/cv.zipath_fit.Rd |only mpath-0.3-13/mpath/man/ncl_fit.Rd | 4 mpath-0.3-13/mpath/man/nclreg.Rd | 10 + mpath-0.3-13/mpath/man/nclreg_fit.Rd | 15 - mpath-0.3-13/mpath/man/zipath.Rd | 137 ++++------------ mpath-0.3-13/mpath/man/zipath_fit.Rd |only mpath-0.3-13/mpath/src/dnbinom.f | 21 +- mpath-0.3-13/mpath/src/dpois.f | 20 +- mpath-0.3-13/mpath/src/glmreg_fit_fortran.f | 11 - mpath-0.3-13/mpath/src/glmregnb_fortran.f | 4 mpath-0.3-13/mpath/src/lmax_zipath.f | 202 +++++++++++++----------- mpath-0.3-13/mpath/src/lmnetGaussian.f | 2 mpath-0.3-13/mpath/src/loss.f | 4 mpath-0.3-13/mpath/src/midloop.f | 8 mpath-0.3-13/mpath/src/midloopGLM.f | 6 mpath-0.3-13/mpath/src/mpath_init.c | 24 +- mpath-0.3-13/mpath/src/nclreg_ad.f |only mpath-0.3-13/mpath/src/nclreg_fortran.f | 109 +++++------- mpath-0.3-13/mpath/src/nclreg_onelambda.f |only mpath-0.3-13/mpath/src/zi_onelambda.f |only mpath-0.3-13/mpath/src/ziloss.f |only mpath-0.3-13/mpath/src/zipath_active.f | 195 ++++++++++++++--------- mpath-0.3-13/mpath/src/zipath_nonactive.f | 54 ++---- mpath-0.3-13/mpath/vignettes/brcancer.Rnw | 190 +++++++++++----------- mpath-0.3-13/mpath/vignettes/german.Rnw | 12 - 53 files changed, 1151 insertions(+), 938 deletions(-)
Title: Animal Movement Modelling using Hidden Markov Models
Description: Provides tools for animal movement modelling using hidden Markov
models. These include processing of tracking data, fitting hidden Markov models
to movement data, visualization of data and fitted model, decoding of the state
process...
Author: Theo Michelot, Roland Langrock, Toby Patterson, Brett McClintock, Eric Rexstad (ctb)
Maintainer: Theo Michelot <tm75@st-andrews.ac.uk>
Diff between moveHMM versions 1.6 dated 2018-06-07 and 1.7 dated 2019-05-19
DESCRIPTION | 13 +-- MD5 | 41 ++++++----- R/plotPR.R | 2 R/plotStates.R | 2 R/plot_moveData.R | 2 R/plot_moveHMM.R | 3 R/simData.R | 9 +- README.md | 3 build/vignette.rds |binary inst/doc/moveHMM-custom-plots.R |only inst/doc/moveHMM-custom-plots.Rnw |only inst/doc/moveHMM-custom-plots.pdf |only inst/doc/moveHMM-guide.R | 11 ++ inst/doc/moveHMM-guide.Rnw | 126 ++++++---------------------------- inst/doc/moveHMM-guide.pdf |binary inst/doc/moveHMM-starting-values.R |only inst/doc/moveHMM-starting-values.Rnw |only inst/doc/moveHMM-starting-values.pdf |only man/fitHMM.Rd | 8 +- man/plot.moveData.Rd | 4 - man/plot.moveHMM.Rd | 7 + man/simData.Rd | 8 +- vignettes/moveHMM-custom-plots.Rnw |only vignettes/moveHMM-guide.Rnw | 126 ++++++---------------------------- vignettes/moveHMM-starting-values.Rnw |only vignettes/refs.bib |only 26 files changed, 117 insertions(+), 248 deletions(-)
Title: Translate ICD-9 into Injury Severity Score
Description: Calculate the injury severity score (ISS)
based on the dictionary in 'ICDPIC' from <https://ideas.repec.org/c/boc/bocode/s457028.html>. The original code was written in
'STATA 11'. The original 'STATA' code was written by David Clark,
Turner Osler and David Hahn. I implement the same logic for easier access.
Ref: David E. Clark & Turner M. Osler & David R. Hahn, 2009.
"ICDPIC: Stata module to provide methods for translating International
Classification of Diseases (Ninth Revision) diagnosis codes into standard injury
categories and/or scores," Statistical Software Components S457028,
Boston College Department of Economics, revised 29 Oct 2010.
Author: Dajun Tian [aut, cre],
David E. Clark & Turner M. Osler & David R. Hahn [dtc] (map from ICD-9,
cited from 'ICDPIC')
Maintainer: Dajun Tian <tiandajun@gmail.com>
Diff between InjurySeverityScore versions 0.0.0.1 dated 2018-03-28 and 0.0.0.2 dated 2019-05-19
DESCRIPTION | 10 ++++++---- MD5 | 6 +++--- R/injury_score.R | 2 +- README.md | 5 ++++- 4 files changed, 14 insertions(+), 9 deletions(-)
More information about InjurySeverityScore at CRAN
Permanent link
Title: Fingertips Data for Public Health
Description: Fingertips (<http://fingertips.phe.org.uk/>) contains data for many indicators of public health in England. The underlying data is now more easily accessible by making use of the API.
Author: Sebastian Fox [aut, cre],
Julian Flowers [aut, ctb],
Simon Thelwall [ctb] (<https://orcid.org/0000-0002-0434-2724>),
Duncan Gormansway [ctb],
Carl Ganz [ctb],
David Whiting [ctb],
Crown Copyright 2018 [cph]
Maintainer: Sebastian Fox <sebastian.fox@phe.gov.uk>
Diff between fingertipsR versions 0.2.3 dated 2019-05-14 and 0.2.4 dated 2019-05-19
DESCRIPTION | 6 MD5 | 10 - NEWS.md | 6 inst/doc/lifeExpectancy.html | 227 ++++++++++++++++++++++------------- inst/doc/selectIndicatorsRedRed.html | 46 +++---- tests/testthat/test-extract.R | 12 + 6 files changed, 193 insertions(+), 114 deletions(-)