Title: Build 'data.table' Expressions with Data Manipulation Verbs
Description: A specialization of 'dplyr' data manipulation verbs that parse and build expressions
which are ultimately evaluated by 'data.table', letting it handle all optimizations. A set of
additional verbs is also provided to facilitate some common operations on a subset of the data.
Author: Alexis Sarda-Espinosa [cre, aut]
Maintainer: Alexis Sarda-Espinosa <alexis.sarda@gmail.com>
Diff between table.express versions 0.1.0 dated 2019-05-31 and 0.1.1 dated 2019-06-03
table.express-0.1.0/table.express/man/is_fun.Rd |only table.express-0.1.1/table.express/DESCRIPTION | 16 table.express-0.1.1/table.express/MD5 | 34 - table.express-0.1.1/table.express/NAMESPACE | 2 table.express-0.1.1/table.express/R/R6-ExprBuilder.R | 7 table.express-0.1.1/table.express/R/UTILS-misc.R | 31 - table.express-0.1.1/table.express/R/VERBS-filter_sd.R | 4 table.express-0.1.1/table.express/R/VERBS-mutate_sd.R | 2 table.express-0.1.1/table.express/R/VERBS-select.R | 12 table.express-0.1.1/table.express/R/VERBS-transmute_sd.R | 35 - table.express-0.1.1/table.express/inst/_pkgdown.yml |only table.express-0.1.1/table.express/inst/doc/table.express.Rmd | 20 table.express-0.1.1/table.express/inst/doc/table.express.html | 303 ++++------ table.express-0.1.1/table.express/man/select-table.express.Rd | 2 table.express-0.1.1/table.express/man/table.express-package.Rd | 11 table.express-0.1.1/table.express/man/transmute-table.express.Rd | 2 table.express-0.1.1/table.express/man/transmute_sd.Rd | 2 table.express-0.1.1/table.express/tests/testthat/unit/test-select.R | 17 table.express-0.1.1/table.express/vignettes/table.express.Rmd | 20 19 files changed, 251 insertions(+), 269 deletions(-)
Title: Spectra Viewer, Organizer, Data Preparation and Property Blocks
Description: Spectra viewer, organizer, data preparation and property blocks
from within R or stand-alone. Binary (application) part is
installed separately using spnInstallApp() from spectrino package.
Author: Teodor Krastev <spectrino@sicyon.com>
Maintainer: Teodor Krastev <spectrino@sicyon.com>
Diff between spectrino versions 1.6.0 dated 2015-07-27 and 2.0.0 dated 2019-06-03
spectrino-1.6.0/spectrino/INDEX |only spectrino-2.0.0/spectrino/DESCRIPTION | 17 spectrino-2.0.0/spectrino/MD5 | 79 ++-- spectrino-2.0.0/spectrino/NAMESPACE | 5 spectrino-2.0.0/spectrino/R/spectrino.R | 324 +++++++++++++----- spectrino-2.0.0/spectrino/R/zzz.R | 1 spectrino-2.0.0/spectrino/man/spectrino-package.Rd | 35 + spectrino-2.0.0/spectrino/man/spnActGrp.Rd | 16 spectrino-2.0.0/spectrino/man/spnActTree.Rd |only spectrino-2.0.0/spectrino/man/spnAddTree.Rd |only spectrino-2.0.0/spectrino/man/spnChartBlock.Rd |only spectrino-2.0.0/spectrino/man/spnCheck.Rd | 7 spectrino-2.0.0/spectrino/man/spnDelBlock.Rd |only spectrino-2.0.0/spectrino/man/spnDelGrp.Rd | 8 spectrino-2.0.0/spectrino/man/spnDelSpc.Rd | 8 spectrino-2.0.0/spectrino/man/spnDelTree.Rd |only spectrino-2.0.0/spectrino/man/spnFree.Rd | 4 spectrino-2.0.0/spectrino/man/spnGetBlockNames.Rd |only spectrino-2.0.0/spectrino/man/spnGetGrp.Rd | 8 spectrino-2.0.0/spectrino/man/spnGetGrpCount.Rd | 8 spectrino-2.0.0/spectrino/man/spnGetGrpName.Rd | 8 spectrino-2.0.0/spectrino/man/spnGetProperty.Rd |only spectrino-2.0.0/spectrino/man/spnGetRefer.Rd | 8 spectrino-2.0.0/spectrino/man/spnGetSpc.Rd | 10 spectrino-2.0.0/spectrino/man/spnGetSpcChecked.Rd | 4 spectrino-2.0.0/spectrino/man/spnGetSpcCount.Rd | 8 spectrino-2.0.0/spectrino/man/spnGetSpcName.Rd | 6 spectrino-2.0.0/spectrino/man/spnGetTree.Rd | 6 spectrino-2.0.0/spectrino/man/spnGetTreeNames.Rd |only spectrino-2.0.0/spectrino/man/spnInstallApp.Rd | 13 spectrino-2.0.0/spectrino/man/spnIsError.Rd | 22 - spectrino-2.0.0/spectrino/man/spnIteration.Rd |only spectrino-2.0.0/spectrino/man/spnLogBlock.Rd |only spectrino-2.0.0/spectrino/man/spnNew.Rd | 8 spectrino-2.0.0/spectrino/man/spnOpenBlock.Rd |only spectrino-2.0.0/spectrino/man/spnOpenGroupOfBlocks.Rd |only spectrino-2.0.0/spectrino/man/spnOpenGrp.Rd | 7 spectrino-2.0.0/spectrino/man/spnOpenSpc.Rd | 4 spectrino-2.0.0/spectrino/man/spnOpenTree.Rd | 8 spectrino-2.0.0/spectrino/man/spnSaveBlock.Rd |only spectrino-2.0.0/spectrino/man/spnSaveGroupOfBlocks.Rd |only spectrino-2.0.0/spectrino/man/spnSaveGrp.Rd | 6 spectrino-2.0.0/spectrino/man/spnSaveTree.Rd | 4 spectrino-2.0.0/spectrino/man/spnSetPPOpt.Rd | 6 spectrino-2.0.0/spectrino/man/spnSetProperty.Rd |only spectrino-2.0.0/spectrino/man/spnSetSpcChecked.Rd | 6 spectrino-2.0.0/spectrino/man/spnSetVis.Rd | 6 spectrino-2.0.0/spectrino/man/spnSourceBlock.Rd |only spectrino-2.0.0/spectrino/man/spnValidation.Rd | 12 49 files changed, 433 insertions(+), 239 deletions(-)
Title: Multiply Robust Methods for Missing Data Problems
Description: Multiply robust estimation for population mean (Han and Wang 2013) <doi:10.1093/biomet/ass087>, regression analysis (Han 2014) <doi:10.1080/01621459.2014.880058> (Han 2016) <doi:10.1111/sjos.12177> and quantile regression (Han et al. 2019) <doi:10.1111/rssb.12309>.
Author: Shixiao Zhang and Peisong Han
Maintainer: Shixiao Zhang <praetere@gmail.com>
Diff between MultiRobust versions 1.0.4 dated 2019-05-03 and 1.0.5 dated 2019-06-03
MultiRobust-1.0.4/MultiRobust/R/def.glm.r |only MultiRobust-1.0.4/MultiRobust/R/def.quantreg.r |only MultiRobust-1.0.4/MultiRobust/man/def.glm.Rd |only MultiRobust-1.0.4/MultiRobust/man/def.quantreg.Rd |only MultiRobust-1.0.5/MultiRobust/DESCRIPTION | 6 +- MultiRobust-1.0.5/MultiRobust/MD5 | 26 ++++---- MultiRobust-1.0.5/MultiRobust/NAMESPACE | 3 - MultiRobust-1.0.5/MultiRobust/R/MR.mean.r | 23 ++++--- MultiRobust-1.0.5/MultiRobust/R/MR.quantile.r | 24 +++++--- MultiRobust-1.0.5/MultiRobust/R/MR.quantreg.r | 65 +++++++++++++--------- MultiRobust-1.0.5/MultiRobust/R/MR.reg.r | 60 ++++++++++++-------- MultiRobust-1.0.5/MultiRobust/R/glm.work.r |only MultiRobust-1.0.5/MultiRobust/man/MR.mean.Rd | 18 +++--- MultiRobust-1.0.5/MultiRobust/man/MR.quantile.Rd | 18 +++--- MultiRobust-1.0.5/MultiRobust/man/MR.quantreg.Rd | 44 ++++++++------ MultiRobust-1.0.5/MultiRobust/man/MR.reg.Rd | 44 ++++++++------ MultiRobust-1.0.5/MultiRobust/man/glm.work.Rd |only 17 files changed, 189 insertions(+), 142 deletions(-)
Title: High Performance Implementation of the Naive Bayes Algorithm
Description: In this implementation of the Naive Bayes classifier following class conditional distributions are available: Bernoulli, Categorical, Gaussian, Poisson and non-parametric representation of the class conditional density estimated via Kernel Density Estimation.
Author: Michal Majka
Maintainer: Michal Majka <michalmajka@hotmail.com>
Diff between naivebayes versions 0.9.5 dated 2019-03-17 and 0.9.6 dated 2019-06-03
DESCRIPTION | 15 +- MD5 | 74 ++++++++++-- NAMESPACE | 38 ++++++ R/bernoulli_naive_bayes.R |only R/gaussian_naive_bayes.R |only R/misc.R |only R/multinomial_naive_bayes.R |only R/naive_bayes.default.R | 81 ++++++++----- R/naive_bayes.formula.R | 13 -- R/nonparametric_naive_bayes.R |only R/plot.naive_bayes.R | 134 ++++++++++++++++------ R/poisson_naive_bayes.R |only R/predict.naive_bayes.R | 182 ++++++++++++++++++++----------- R/print.naive_bayes.R | 42 ++++--- R/print.naive_bayes_tables.R |only R/summary.naive_bayes.R |only R/tables.R | 121 +++++++++++++++++++- build |only inst/CITATION |only inst/NEWS.Rd | 51 +++++++- inst/doc |only inst/validation_bernoulli_categorical.R |only inst/validation_multinomial.R |only man/bernoulli_naive_bayes.Rd |only man/coef.Rd |only man/figures |only man/gaussian_naive_bayes.Rd |only man/get_cond_dist.Rd |only man/infix_class_prob.Rd |only man/multinomial_naive_bayes.Rd |only man/naive_bayes.Rd | 166 +++++++++++++++++++++++----- man/naivebayes.Rd |only man/nonparametric_naive_bayes.Rd |only man/plot.bernoulli_naive_bayes.Rd |only man/plot.gaussian_naive_bayes.Rd |only man/plot.naive_bayes.Rd | 52 +++++++- man/plot.nonparametric_naive_bayes.Rd |only man/plot.poisson_naive_bayes.Rd |only man/poisson_naive_bayes.Rd |only man/predict.bernoulli_naive_bayes.Rd |only man/predict.gaussian_naive_bayes.Rd |only man/predict.multinomial_naive_bayes.Rd |only man/predict.naive_bayes.Rd | 45 ++++--- man/predict.nonparametric_naive_bayes.Rd |only man/predict.poisson_naive_bayes.Rd |only man/tables.Rd | 13 +- vignettes |only 47 files changed, 785 insertions(+), 242 deletions(-)
Title: Survival Prediction with Multi-Task Logistic Regression
Description: An implementation of Multi-Task Logistic Regression (MTLR) for R.
This package is based on the method proposed by Yu et al. (2011) which utilized MTLR for generating individual survival curves
by learning feature weights which vary across time. This model was further extended to account for left and interval censored data.
Author: Humza Haider
Maintainer: Humza Haider <hshaider@ualberta.ca>
Diff between MTLR versions 0.2.0 dated 2019-03-09 and 0.2.1 dated 2019-06-03
MTLR-0.2.0/MTLR/tests/testthat/1curve.rds |only MTLR-0.2.0/MTLR/tests/testthat/1curve_colored.rds |only MTLR-0.2.0/MTLR/tests/testthat/curveshortx.rds |only MTLR-0.2.0/MTLR/tests/testthat/manycurves.rds |only MTLR-0.2.0/MTLR/tests/testthat/plot.rds |only MTLR-0.2.1/MTLR/DESCRIPTION | 10 +- MTLR-0.2.1/MTLR/MD5 | 47 ++++++------ MTLR-0.2.1/MTLR/NEWS.md | 6 + MTLR-0.2.1/MTLR/R/method.R | 38 +++++++--- MTLR-0.2.1/MTLR/R/mtlr.R | 8 +- MTLR-0.2.1/MTLR/R/utility.R | 51 +++++++------- MTLR-0.2.1/MTLR/build/vignette.rds |binary MTLR-0.2.1/MTLR/inst/doc/workflow.html | 13 ++- MTLR-0.2.1/MTLR/man/predict.mtlr.Rd | 22 ++++-- MTLR-0.2.1/MTLR/tests/figs |only MTLR-0.2.1/MTLR/tests/testthat/mtlrcv_censored.rds |binary MTLR-0.2.1/MTLR/tests/testthat/mtlrcv_leuk.rds |binary MTLR-0.2.1/MTLR/tests/testthat/mtlrcv_leukNoPrev.rds |binary MTLR-0.2.1/MTLR/tests/testthat/mtlrcv_lung.rds |binary MTLR-0.2.1/MTLR/tests/testthat/mtlrcv_mixed_censoring.rds |binary MTLR-0.2.1/MTLR/tests/testthat/predProb.rds |binary MTLR-0.2.1/MTLR/tests/testthat/predProb_NoZero.rds |binary MTLR-0.2.1/MTLR/tests/testthat/test-method.R | 3 MTLR-0.2.1/MTLR/tests/testthat/test-plotcurves.R | 13 ++- MTLR-0.2.1/MTLR/tests/testthat/test-predictmethods.R | 10 +- 25 files changed, 134 insertions(+), 87 deletions(-)
Title: Panel Smooth Transition Regression Modelling
Description: Provides the Panel Smooth Transition Regression (PSTR) modelling.
The modelling procedure consists of three stages: Specification, Estimation and Evaluation.
The package offers sharp tools helping the package user(s) to conduct model specification tests,
to do PSTR model estimation, and to do model evaluation.
The tests implemented in the package allow for cluster-dependency and are heteroskedasticity-consistent.
The wild bootstrap and wild cluster bootstrap tests are also implemented.
Parallel computation (as an option) is implemented in some functions, especially the bootstrap tests.
The package suits tasks running many cores on super-computation servers.
Author: Yukai Yang [aut, cre] (<https://orcid.org/0000-0002-2623-8549>)
Maintainer: Yukai Yang <yukai.yang@statistik.uu.se>
Diff between PSTR versions 1.2.3 dated 2018-12-09 and 1.2.4 dated 2019-06-03
DESCRIPTION | 10 MD5 | 34 +- NAMESPACE | 8 NEWS.md | 43 ++- R/PSTR.R | 4 R/estimation.R | 4 R/evaluation.R | 2 R/utils.R | 164 +++++++++-- README.md |only build/vignette.rds |binary inst/doc/pstr-vignette.R | 26 + inst/doc/pstr-vignette.Rmd | 40 +- inst/doc/pstr-vignette.html | 627 +++++++++++++++++++++++++++++--------------- man/EstPSTR.Rd | 4 man/EvalTest.Rd | 2 man/plot_coefficients.Rd |only man/plot_response.Rd | 9 man/plot_transition.Rd | 19 - vignettes/pstr-vignette.Rmd | 40 +- 19 files changed, 722 insertions(+), 314 deletions(-)
More information about PowerfulMaxEigenpair at CRAN
Permanent link
Title: Modeling Phylogenetic Signals using Eigenvector Maps
Description: Computational tools to represent phylogenetic signals using adapted eigenvector maps.
Author: Guillaume Guenard, with contribution from Pierre Legendre
Maintainer: Guillaume Guenard <guillaume.guenard@gmail.com>
Diff between MPSEM versions 0.3-4 dated 2018-05-16 and 0.3-6 dated 2019-06-03
DESCRIPTION | 8 +-- MD5 | 15 +++--- build/partial.rdb |binary build/vignette.rds |binary inst/doc/MPSEM.Rnw | 95 ++++++++++++++++++++----------------------- inst/doc/MPSEM.pdf |binary man/MPSEM-package.Rd | 2 vignettes/MPSEM.Rnw | 95 ++++++++++++++++++++----------------------- vignettes/PEM_with_MPSEM.lyx |only 9 files changed, 105 insertions(+), 110 deletions(-)
Title: Phylogenetic Tree Search Using Custom Optimality Criteria
Description: Searches for phylogenetic trees that are optimal using a user-defined criterion.
Implements Profile Parsimony (Faith and Trueman, 2001) <doi:10.1080/10635150118627>, and
Successive Approximations (Farris, 1969) <doi:10.2307/2412182>.
Handles inapplicable data using the algorithm of Brazeau, Guillerme and Smith
(2019) <doi:10.1093/sysbio/syy083>.
Author: Martin R. Smith [aut, cre, cph]
(<https://orcid.org/0000-0001-5660-1727>),
Emmanuel Paradis [cph] (<https://orcid.org/0000-0003-3092-2199>),
Klaus Schliep [cph] (<https://orcid.org/0000-0003-2941-0161>),
Martin Brazeau [cph] (<https://orcid.org/0000-0002-0650-1282>)
Maintainer: Martin R. Smith <martin.smith@durham.ac.uk>
Diff between TreeSearch versions 0.3.0 dated 2019-03-21 and 0.3.2 dated 2019-06-03
TreeSearch-0.3.0/TreeSearch/inst/doc/getting-started.R |only TreeSearch-0.3.0/TreeSearch/inst/doc/profile-scores.R |only TreeSearch-0.3.0/TreeSearch/inst/doc/profile-scores.Rmd |only TreeSearch-0.3.0/TreeSearch/inst/doc/profile-scores.html |only TreeSearch-0.3.0/TreeSearch/inst/tests/hyolith_benchmark.R |only TreeSearch-0.3.0/TreeSearch/vignettes/profile-scores.Rmd |only TreeSearch-0.3.2/TreeSearch/DESCRIPTION | 8 TreeSearch-0.3.2/TreeSearch/MD5 | 91 +- TreeSearch-0.3.2/TreeSearch/NAMESPACE | 12 TreeSearch-0.3.2/TreeSearch/NEWS.md | 22 TreeSearch-0.3.2/TreeSearch/R/NNI.R | 32 - TreeSearch-0.3.2/TreeSearch/R/ReleaseQuestions.R | 5 TreeSearch-0.3.2/TreeSearch/R/SPR.R | 37 - TreeSearch-0.3.2/TreeSearch/R/SuccessiveApproximations.R | 14 TreeSearch-0.3.2/TreeSearch/R/TBR.R | 12 TreeSearch-0.3.2/TreeSearch/R/TreeSearch.R | 9 TreeSearch-0.3.2/TreeSearch/R/helper_functions.R | 10 TreeSearch-0.3.2/TreeSearch/R/pp_info_extra_step.r | 3 TreeSearch-0.3.2/TreeSearch/R/tree_distance.R | 317 +++++++--- TreeSearch-0.3.2/TreeSearch/R/tree_numbering.R | 13 TreeSearch-0.3.2/TreeSearch/R/tree_rearrangement.R | 16 TreeSearch-0.3.2/TreeSearch/build/partial.rdb |binary TreeSearch-0.3.2/TreeSearch/build/vignette.rds |binary TreeSearch-0.3.2/TreeSearch/inst/CITATION | 2 TreeSearch-0.3.2/TreeSearch/inst/REFERENCES.bib | 24 TreeSearch-0.3.2/TreeSearch/inst/doc/getting-started.Rmd | 16 TreeSearch-0.3.2/TreeSearch/inst/doc/getting-started.html | 103 +-- TreeSearch-0.3.2/TreeSearch/inst/doc/inapplicable.R | 17 TreeSearch-0.3.2/TreeSearch/inst/doc/inapplicable.Rmd | 28 TreeSearch-0.3.2/TreeSearch/inst/doc/inapplicable.html | 212 +++--- TreeSearch-0.3.2/TreeSearch/inst/doc/load-data.R | 20 TreeSearch-0.3.2/TreeSearch/inst/doc/load-data.Rmd | 45 + TreeSearch-0.3.2/TreeSearch/inst/doc/load-data.html | 183 +++-- TreeSearch-0.3.2/TreeSearch/inst/doc/profile.R | 206 +++++- TreeSearch-0.3.2/TreeSearch/inst/doc/profile.Rmd | 281 +++++--- TreeSearch-0.3.2/TreeSearch/inst/doc/profile.html | 256 +++----- TreeSearch-0.3.2/TreeSearch/man/CalculateTreeDistance.Rd |only TreeSearch-0.3.2/TreeSearch/man/Cladewise.Rd | 7 TreeSearch-0.3.2/TreeSearch/man/MatchingSplitDistance.Rd |only TreeSearch-0.3.2/TreeSearch/man/NNI.Rd | 11 TreeSearch-0.3.2/TreeSearch/man/NyeTreeSimilarity.Rd |only TreeSearch-0.3.2/TreeSearch/man/SPR.Rd | 7 TreeSearch-0.3.2/TreeSearch/man/StopUnlessBifurcating.Rd |only TreeSearch-0.3.2/TreeSearch/man/TBR.Rd | 9 TreeSearch-0.3.2/TreeSearch/man/VisualizeMatching.Rd |only TreeSearch-0.3.2/TreeSearch/tests/testthat/test-information.R | 7 TreeSearch-0.3.2/TreeSearch/tests/testthat/test-tree-distance.R | 26 TreeSearch-0.3.2/TreeSearch/tests/testthat/test-tree-rearrange.R | 23 TreeSearch-0.3.2/TreeSearch/vignettes/getting-started.Rmd | 16 TreeSearch-0.3.2/TreeSearch/vignettes/inapplicable.Rmd | 28 TreeSearch-0.3.2/TreeSearch/vignettes/load-data.Rmd | 45 + TreeSearch-0.3.2/TreeSearch/vignettes/profile.Rmd | 281 +++++--- 52 files changed, 1614 insertions(+), 840 deletions(-)
Title: Spatially Explicit Capture-Recapture
Description: Functions to estimate the density and size of a spatially distributed animal population sampled with an array of passive detectors, such as traps, or by searching polygons or transects. Models incorporating distance-dependent detection are fitted by maximizing the likelihood. Tools are included for data manipulation and model selection.
Author: Murray Efford
Maintainer: Murray Efford <murray.efford@otago.ac.nz>
Diff between secr versions 3.2.0 dated 2019-01-25 and 3.2.1 dated 2019-06-03
DESCRIPTION | 8 - MD5 | 27 ++-- NAMESPACE | 2 NEWS | 11 + R/homerange.R | 67 +++++----- R/make.capthist.R | 3 R/methods.R | 279 -------------------------------------------- R/plot.popn.R | 14 ++ R/sim.popn.R | 45 ++++++- R/summary.capthist.R |only inst/doc/secr-datainput.pdf |binary inst/doc/secr-overview.pdf |binary man/derivedMS.Rd | 1 man/secr-package.Rd | 4 man/turnover.Rd | 57 ++++++-- 15 files changed, 164 insertions(+), 354 deletions(-)
Title: Antimicrobial Resistance Analysis
Description: Functions to simplify the analysis and prediction of Antimicrobial
Resistance (AMR) and to work with microbial and antimicrobial properties by
using evidence-based methods.
Author: Matthijs S. Berends [aut, cre]
(<https://orcid.org/0000-0001-7620-1800>),
Christian F. Luz [aut] (<https://orcid.org/0000-0001-5809-5995>),
Erwin E. A. Hassing [ctb],
Corinna Glasner [aut, ths] (<https://orcid.org/0000-0003-1241-1328>),
Alex W. Friedrich [aut, ths] (<https://orcid.org/0000-0003-4881-038X>),
Bhanu N. M. Sinha [aut, ths] (<https://orcid.org/0000-0003-1634-0010>)
Maintainer: Matthijs S. Berends <m.s.berends@umcg.nl>
Diff between AMR versions 0.6.1 dated 2019-03-29 and 0.7.0 dated 2019-06-03
AMR-0.6.1/AMR/R/abname.R |only AMR-0.6.1/AMR/R/atc_property.R |only AMR-0.6.1/AMR/inst/doc/G_test.R |only AMR-0.6.1/AMR/inst/doc/G_test.Rmd |only AMR-0.6.1/AMR/inst/doc/G_test.html |only AMR-0.6.1/AMR/inst/doc/atc_property.R |only AMR-0.6.1/AMR/inst/doc/atc_property.Rmd |only AMR-0.6.1/AMR/inst/doc/atc_property.html |only AMR-0.6.1/AMR/man/abname.Rd |only AMR-0.6.1/AMR/man/atc_property.Rd |only AMR-0.6.1/AMR/man/get_locale.Rd |only AMR-0.6.1/AMR/man/rsi.Rd |only AMR-0.6.1/AMR/tests/testthat/test-abname.R |only AMR-0.6.1/AMR/tests/testthat/test-atc_property.R |only AMR-0.6.1/AMR/vignettes/G_test.Rmd |only AMR-0.6.1/AMR/vignettes/atc_property.Rmd |only AMR-0.7.0/AMR/DESCRIPTION | 10 AMR-0.7.0/AMR/MD5 | 343 +- AMR-0.7.0/AMR/NAMESPACE | 77 AMR-0.7.0/AMR/NEWS.md | 62 AMR-0.7.0/AMR/R/ab.R |only AMR-0.7.0/AMR/R/ab_property.R |only AMR-0.7.0/AMR/R/age.R | 75 AMR-0.7.0/AMR/R/amr.R | 17 AMR-0.7.0/AMR/R/atc.R | 116 AMR-0.7.0/AMR/R/atc_online.R | 2 AMR-0.7.0/AMR/R/availability.R | 2 AMR-0.7.0/AMR/R/catalogue_of_life.R | 8 AMR-0.7.0/AMR/R/count.R | 117 AMR-0.7.0/AMR/R/data.R | 187 - 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Title: Statistical Visualization Tools
Description: Visualization functions in the applications of translational medicine (TM) and biomarker (BM) development to compare groups by statistically visualizing data and/or results of analyses, such as visualizing data by displaying in one figure different groups' histograms, boxplots, densities, scatter plots, error-bar plots, or trajectory plots, by displaying scatter plots of top principal components or dendrograms with data points colored based on group information, or visualizing volcano plots to check the results of whole genome analyses for gene differential expression.
Author: Wenfei Zhang [aut, cre],
Weiliang Qiu [aut, ctb],
Xuan Lin [aut, ctb],
Donghui Zhang [aut, ctb]
Maintainer: Wenfei Zhang <Wenfei.Zhang@sanofi.com>
Diff between statVisual versions 1.0.9 dated 2019-04-16 and 1.1.8 dated 2019-06-03
DESCRIPTION | 10 - MD5 | 57 +++--- NAMESPACE | 248 +++++++++++++-------------- NEWS | 40 ++++ R/BiAxisErrBar.R |only R/barPlot.R |only R/iprcomp.R | 29 ++- R/stackedBarPlot.R |only R/statVisual.R | 429 +++++++++++++++++++++++++++++++++-------------- build/vignette.rds |binary data/genoSim.rda |only inst/doc/statVisual.R | 272 ++++++++++++++++++++++++----- inst/doc/statVisual.Rmd | 326 ++++++++++++++++++++++++++++++----- inst/doc/statVisual.html | 399 +++++++++++++++++++++++++++++++++++++------ man/BiAxisErrBar.Rd | 145 ++++++--------- man/Box.Rd | 10 - man/BoxROC.Rd | 6 man/Den.Rd | 4 man/Dendro.Rd | 4 man/ErrBar.Rd | 14 + man/Hist.Rd | 4 man/ImpPlot.Rd | 9 man/LinePlot.Rd | 12 + man/PCA_score.Rd | 6 man/PVCA.Rd | 4 man/Volcano.Rd | 4 man/XYscatter.Rd | 4 man/barPlot.Rd |only man/cv_glmnet_plot.Rd | 9 man/genoSim.Rd |only man/iprcomp.Rd | 5 man/stackedBarPlot.Rd |only vignettes/statVisual.Rmd | 326 ++++++++++++++++++++++++++++++----- 33 files changed, 1801 insertions(+), 575 deletions(-)
Title: Compute the Rectangular Statistical Cartogram
Description: Provides an interface and a C++ implementation of the RecMap MP2
construction heuristic (Panse C. (2018) <doi:10.18637/jss.v086.c01>). This algorithm
draws maps according to a given statistical value (e.g., election results,
population or epidemiological data). The basic idea of the RecMap algorithm is
that each map region (e.g., different countries) is represented by a
rectangle. The area of each rectangle represents the statistical value given
as input (maintain zero cartographic error). Documentation about the usage
of the recmap algorithm is provided by a vignette included in this package.
Author: Christian Panse [aut, cre] (<https://orcid.org/0000-0003-1975-3064>)
Maintainer: Christian Panse <Christian.Panse@gmail.com>
Diff between recmap versions 1.0.1 dated 2019-03-06 and 1.0.5 dated 2019-06-03
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Title: Multinomial Logit Models
Description: Maximum Likelihood estimation of random utility discrete
choice models, as described in Kenneth Train (2012) Discrete Choice
Methods with Simulations <doi:10.1017/CBO9780511805271>.
Author: Yves Croissant [aut, cre]
Maintainer: Yves Croissant <yves.croissant@univ-reunion.fr>
Diff between mlogit versions 0.4-1 dated 2019-02-01 and 0.4-2 dated 2019-06-03
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Title: Jaccard Index for Population Structure Identification
Description: Uses the Jaccard similarity index to account for population
structure in sequencing studies. This method was specifically
designed to detect population stratification based on rare variants, hence it
will be especially useful in rare variant analysis.
Author: Dmitry Prokopenko
Maintainer: Dmitry Prokopenko <dmitry.prokopenko@uni-bonn.de>
Diff between jacpop versions 0.5 dated 2016-07-25 and 0.6 dated 2019-06-03
DESCRIPTION | 9 +++++---- MD5 | 7 ++++--- NEWS |only R/jaccard_simple.R | 10 +++++++--- man/generate_pw_jaccard.Rd | 6 +++--- 5 files changed, 19 insertions(+), 13 deletions(-)
Title: Learning Graphs from Data via Spectral Constraints
Description: Block coordinate descent estimators to learn k-component, bipartite,
and k-component bipartite graphs from data by imposing spectral constraints
on the eigenvalues and eigenvectors of the Laplacian and adjacency matrices.
Those estimators leverages spectral properties of the graphical models as a
prior information, which turn out to play key roles in unsupervised machine
learning tasks such as clustering and community detection. This package is
based on the paper "A Unified Framework for Structured Graph Learning via
Spectral Constraints" by S. Kumar et al (2019) <arXiv:1904.09792>.
Author: Ze Vinicius [cre, aut],
Daniel P. Palomar [aut]
Maintainer: Ze Vinicius <jvmirca@gmail.com>
Diff between spectralGraphTopology versions 0.1.0 dated 2019-05-08 and 0.1.1 dated 2019-06-03
spectralGraphTopology-0.1.0/spectralGraphTopology/man/Ainv.Rd |only spectralGraphTopology-0.1.0/spectralGraphTopology/man/Astar.Rd |only spectralGraphTopology-0.1.0/spectralGraphTopology/man/Linv.Rd |only spectralGraphTopology-0.1.0/spectralGraphTopology/man/Lstar.Rd |only spectralGraphTopology-0.1.0/spectralGraphTopology/man/Mmat.Rd |only spectralGraphTopology-0.1.0/spectralGraphTopology/man/Pmat.Rd |only spectralGraphTopology-0.1.0/spectralGraphTopology/man/altAstar.Rd |only spectralGraphTopology-0.1.0/spectralGraphTopology/man/altLstar.Rd |only spectralGraphTopology-0.1.0/spectralGraphTopology/man/prial.Rd |only spectralGraphTopology-0.1.0/spectralGraphTopology/man/vec.Rd |only spectralGraphTopology-0.1.0/spectralGraphTopology/man/vecLmat.Rd |only spectralGraphTopology-0.1.1/spectralGraphTopology/DESCRIPTION | 9 spectralGraphTopology-0.1.1/spectralGraphTopology/MD5 | 39 -- spectralGraphTopology-0.1.1/spectralGraphTopology/NEWS.md | 7 spectralGraphTopology-0.1.1/spectralGraphTopology/R/RcppExports.R | 67 ---- spectralGraphTopology-0.1.1/spectralGraphTopology/R/blockCoordinateDescent.R | 29 -- spectralGraphTopology-0.1.1/spectralGraphTopology/R/spectralGraphTopology-package.R | 8 spectralGraphTopology-0.1.1/spectralGraphTopology/R/utils.R | 10 spectralGraphTopology-0.1.1/spectralGraphTopology/README.md | 119 +++++--- spectralGraphTopology-0.1.1/spectralGraphTopology/inst/doc/SpectralGraphTopology.html | 11 spectralGraphTopology-0.1.1/spectralGraphTopology/man/spectralGraphTopology-package.Rd | 8 spectralGraphTopology-0.1.1/spectralGraphTopology/src/RcppExports.cpp | 24 - spectralGraphTopology-0.1.1/spectralGraphTopology/src/operators.cc | 142 +++------- spectralGraphTopology-0.1.1/spectralGraphTopology/tests/testthat/test-learnGraphTopology.R | 6 spectralGraphTopology-0.1.1/spectralGraphTopology/tests/testthat/test-operators.R | 16 + spectralGraphTopology-0.1.1/spectralGraphTopology/tests/testthat/test-utils.R | 13 26 files changed, 201 insertions(+), 307 deletions(-)
More information about spectralGraphTopology at CRAN
Permanent link
Title: Geometric Shadow Calculations
Description: Functions for calculating: (1) shadow height, (2) logical shadow flag, (3) shadow footprint, (4) Sky View Factor and (5) radiation load. Basic required inputs include a polygonal layer of obstacle outlines along with their heights (i.e. "extruded polygons"), sun azimuth and sun elevation. The package also provides functions for related preliminary calculations: breaking polygons into line segments, determining azimuth of line segments, shifting segments by azimuth and distance, constructing the footprint of a line-of-sight between an observer and the sun, and creating a 3D grid covering the surface area of extruded polygons.
Author: Michael Dorman [aut, cre],
Evyatar Erell [ctb],
Itai Kloog [ctb],
Adi Vulkan [ctb]
Maintainer: Michael Dorman <dorman@post.bgu.ac.il>
Diff between shadow versions 0.6.0 dated 2019-01-07 and 0.6.1 dated 2019-06-03
DESCRIPTION | 9 +++++---- MD5 | 16 ++++++++-------- NEWS.md | 36 ++++++++++++++++++++++-------------- R/radiation.R | 1 + R/shiftAz.R | 6 +----- R/sunLocation.R | 6 +----- build/vignette.rds |binary data/tmy.RData |binary man/radiation.Rd | 1 + 9 files changed, 39 insertions(+), 36 deletions(-)
Title: Ocean Biogeographic Information System (OBIS) Client
Description: Client for the Ocean Biogeographic Information System (<https://obis.org>).
Author: Pieter Provoost [cre, aut],
Samuel Bosch [aut],
Ward Appeltans [ctb],
OBIS [cph]
Maintainer: Pieter Provoost <pieterprovoost@gmail.com>
Diff between robis versions 2.1.6 dated 2019-05-31 and 2.1.8 dated 2019-06-03
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NEWS.md | 8 ++++++++ R/checklist.R | 22 ++++++++++------------ R/occurrence.R | 3 +++ R/util.R | 2 +- 6 files changed, 31 insertions(+), 22 deletions(-)
Title: Generate PMML for Various Models
Description: The Predictive Model Markup Language (PMML) is an XML-based language which provides a way for applications to define machine learning, statistical and data mining models and to share models between PMML compliant applications. More information about the PMML industry standard and the Data Mining Group can be found at <http://www.dmg.org>. The generated PMML can be imported into any PMML consuming application, such as Zementis Predictive Analytics products, which integrate with web services, relational database systems and deploy natively on Hadoop in conjunction with Hive, Spark or Storm, as well as allow predictive analytics to be executed for IBM z Systems mainframe applications and real-time, streaming analytics platforms. The package isofor (used for anomaly detection) can be installed with devtools::install_github("Zelazny7/isofor").
Author: Dmitriy Bolotov [aut, cre],
Tridivesh Jena [aut],
Graham Williams [aut],
Wen-Ching Lin [aut],
Michael Hahsler [aut],
Hemant Ishwaran [aut],
Udaya B. Kogalur [aut],
Rajarshi Guha [aut],
Software AG [cph]
Maintainer: Dmitriy Bolotov <rpmmlsupport@softwareag.com>
Diff between pmml versions 1.5.7 dated 2019-01-25 and 2.0.0 dated 2019-06-03
pmml-1.5.7/pmml/R/AddAttributes.R |only pmml-1.5.7/pmml/R/addDDAttributes.R |only pmml-1.5.7/pmml/R/addDFChildren.R |only pmml-1.5.7/pmml/R/addLT.R |only pmml-1.5.7/pmml/R/addMSAttributes.R |only pmml-1.5.7/pmml/R/addOutputField.R |only pmml-1.5.7/pmml/R/fileToXMLNode.R |only pmml-1.5.7/pmml/R/functionToPMML.R |only pmml-1.5.7/pmml/R/makeIntervals.R |only pmml-1.5.7/pmml/R/makeOutputNodes.R |only pmml-1.5.7/pmml/R/makeValues.R |only pmml-1.5.7/pmml/R/pmml.datadictionary.R |only pmml-1.5.7/pmml/R/pmml.miningschema.R |only pmml-1.5.7/pmml/R/pmml.survreg.R |only pmml-1.5.7/pmml/R/pmml.utils.R |only pmml-1.5.7/pmml/R/pmml.xgboost.R |only pmml-1.5.7/pmml/R/pmmlCanExport.R |only pmml-1.5.7/pmml/R/pmmltoc.R |only pmml-1.5.7/pmml/inst/ChangeLog |only pmml-1.5.7/pmml/man/AddAttributes.Rd |only pmml-1.5.7/pmml/man/addDDAttributes.Rd |only pmml-1.5.7/pmml/man/addDFChildren.Rd |only pmml-1.5.7/pmml/man/addLT.Rd |only pmml-1.5.7/pmml/man/addMSAttributes.Rd |only pmml-1.5.7/pmml/man/addOutputField.Rd |only pmml-1.5.7/pmml/man/fileToXMLNode.Rd |only pmml-1.5.7/pmml/man/functionToPMML.Rd |only pmml-1.5.7/pmml/man/makeIntervals.Rd |only pmml-1.5.7/pmml/man/makeOutputNodes.Rd |only pmml-1.5.7/pmml/man/makeValues.Rd |only pmml-1.5.7/pmml/man/pmml.arules.Rd |only pmml-1.5.7/pmml/man/pmmlCanExport.Rd |only pmml-1.5.7/pmml/man/pmmltoc.Rd |only pmml-1.5.7/pmml/man/savePMML.Rd |only pmml-2.0.0/pmml/DESCRIPTION | 39 pmml-2.0.0/pmml/LICENSE |only pmml-2.0.0/pmml/MD5 | 251 ++-- pmml-2.0.0/pmml/NAMESPACE | 112 + pmml-2.0.0/pmml/NEWS.md |only pmml-2.0.0/pmml/R/add_attributes.R |only pmml-2.0.0/pmml/R/add_data_field_attributes.R |only pmml-2.0.0/pmml/R/add_data_field_children.R |only pmml-2.0.0/pmml/R/add_mining_field_attributes.R |only pmml-2.0.0/pmml/R/add_output_field.R |only pmml-2.0.0/pmml/R/data-audit.R |only pmml-2.0.0/pmml/R/data-houseVotes84.R |only pmml-2.0.0/pmml/R/data_dictionary.R |only pmml-2.0.0/pmml/R/defunct.R |only pmml-2.0.0/pmml/R/file_to_xml_node.R |only pmml-2.0.0/pmml/R/function_to_pmml.R |only pmml-2.0.0/pmml/R/make_intervals.R |only pmml-2.0.0/pmml/R/make_output_nodes.R |only pmml-2.0.0/pmml/R/make_values.R |only pmml-2.0.0/pmml/R/mining_schema.R |only pmml-2.0.0/pmml/R/pmml-package.R |only pmml-2.0.0/pmml/R/pmml.R | 1074 ++----------------- pmml-2.0.0/pmml/R/pmml.ada.R | 506 +++++--- pmml-2.0.0/pmml/R/pmml.coxph.R | 688 +++++------- pmml-2.0.0/pmml/R/pmml.cv.glmnet.R | 693 ++++++------ pmml-2.0.0/pmml/R/pmml.gbm.R | 773 +++++++------ pmml-2.0.0/pmml/R/pmml.glm.R | 667 +++++------ pmml-2.0.0/pmml/R/pmml.hclust.R | 165 +- pmml-2.0.0/pmml/R/pmml.iForest.R | 534 ++++----- pmml-2.0.0/pmml/R/pmml.itemsets.R | 120 +- pmml-2.0.0/pmml/R/pmml.kmeans.R | 167 +- pmml-2.0.0/pmml/R/pmml.ksvm.R | 662 +++++------ pmml-2.0.0/pmml/R/pmml.lm.R | 322 ++--- pmml-2.0.0/pmml/R/pmml.multinom.R | 398 +++---- pmml-2.0.0/pmml/R/pmml.naiveBayes.R | 266 ++-- pmml-2.0.0/pmml/R/pmml.neighbr.R | 414 +++---- pmml-2.0.0/pmml/R/pmml.nnet.R | 674 +++++------ pmml-2.0.0/pmml/R/pmml.randomForest.R | 931 +++++++--------- pmml-2.0.0/pmml/R/pmml.rfsrc.R | 463 ++++---- pmml-2.0.0/pmml/R/pmml.rpart.R | 642 +++++------ pmml-2.0.0/pmml/R/pmml.rules.R | 152 +- pmml-2.0.0/pmml/R/pmml.svm.R | 788 ++++++------- pmml-2.0.0/pmml/R/pmml.xgb.Booster.R |only pmml-2.0.0/pmml/R/rename_wrap_var.R |only pmml-2.0.0/pmml/R/save_pmml.R |only pmml-2.0.0/pmml/R/utils.R |only pmml-2.0.0/pmml/R/xform_discretize.R |only pmml-2.0.0/pmml/R/xform_function.R |only pmml-2.0.0/pmml/R/xform_map.R |only pmml-2.0.0/pmml/R/xform_min_max.R |only pmml-2.0.0/pmml/R/xform_norm_discrete.R |only pmml-2.0.0/pmml/R/xform_wrap.R |only pmml-2.0.0/pmml/R/xform_z_score.R |only pmml-2.0.0/pmml/README.md |only pmml-2.0.0/pmml/build/vignette.rds |binary pmml-2.0.0/pmml/inst/doc/packages_and_functions.Rmd | 43 pmml-2.0.0/pmml/inst/doc/packages_and_functions.html | 234 +++- pmml-2.0.0/pmml/inst/doc/xform_function.R |only pmml-2.0.0/pmml/inst/doc/xform_function.Rmd |only pmml-2.0.0/pmml/inst/doc/xform_function.html |only pmml-2.0.0/pmml/man/add_attributes.Rd |only pmml-2.0.0/pmml/man/add_data_field_attributes.Rd |only pmml-2.0.0/pmml/man/add_data_field_children.Rd |only pmml-2.0.0/pmml/man/add_mining_field_attributes.Rd |only pmml-2.0.0/pmml/man/add_output_field.Rd |only pmml-2.0.0/pmml/man/audit.Rd | 51 pmml-2.0.0/pmml/man/figures |only pmml-2.0.0/pmml/man/file_to_xml_node.Rd |only pmml-2.0.0/pmml/man/function_to_pmml.Rd |only pmml-2.0.0/pmml/man/houseVotes84.Rd | 63 - pmml-2.0.0/pmml/man/make_intervals.Rd |only pmml-2.0.0/pmml/man/make_output_nodes.Rd |only pmml-2.0.0/pmml/man/make_values.Rd |only pmml-2.0.0/pmml/man/pmml-package.Rd |only pmml-2.0.0/pmml/man/pmml.Rd | 220 +-- pmml-2.0.0/pmml/man/pmml.ada.Rd | 97 - pmml-2.0.0/pmml/man/pmml.coxph.Rd | 65 - pmml-2.0.0/pmml/man/pmml.cv.glmnet.Rd | 146 +- pmml-2.0.0/pmml/man/pmml.gbm.Rd | 95 - pmml-2.0.0/pmml/man/pmml.glm.Rd | 96 - pmml-2.0.0/pmml/man/pmml.hclust.Rd | 106 - pmml-2.0.0/pmml/man/pmml.iForest.Rd | 71 - pmml-2.0.0/pmml/man/pmml.kmeans.Rd | 81 - pmml-2.0.0/pmml/man/pmml.ksvm.Rd | 88 - pmml-2.0.0/pmml/man/pmml.lm.Rd | 72 - pmml-2.0.0/pmml/man/pmml.multinom.Rd | 62 - pmml-2.0.0/pmml/man/pmml.naiveBayes.Rd | 110 - pmml-2.0.0/pmml/man/pmml.neighbr.Rd | 102 - pmml-2.0.0/pmml/man/pmml.nnet.Rd | 70 - pmml-2.0.0/pmml/man/pmml.randomForest.Rd | 87 - pmml-2.0.0/pmml/man/pmml.rfsrc.Rd | 105 - pmml-2.0.0/pmml/man/pmml.rpart.Rd | 79 - pmml-2.0.0/pmml/man/pmml.rules.Rd |only pmml-2.0.0/pmml/man/pmml.svm.Rd | 88 - pmml-2.0.0/pmml/man/pmml.xgb.Booster.Rd | 137 +- pmml-2.0.0/pmml/man/rename_wrap_var.Rd |only pmml-2.0.0/pmml/man/save_pmml.Rd |only pmml-2.0.0/pmml/man/xform_discretize.Rd |only pmml-2.0.0/pmml/man/xform_function.Rd |only pmml-2.0.0/pmml/man/xform_map.Rd |only pmml-2.0.0/pmml/man/xform_min_max.Rd |only pmml-2.0.0/pmml/man/xform_norm_discrete.Rd |only pmml-2.0.0/pmml/man/xform_wrap.Rd |only pmml-2.0.0/pmml/man/xform_z_score.Rd |only pmml-2.0.0/pmml/tests |only pmml-2.0.0/pmml/vignettes/packages_and_functions.Rmd | 43 pmml-2.0.0/pmml/vignettes/xform_function.Rmd |only 141 files changed, 6797 insertions(+), 7115 deletions(-)
More information about PakPMICS2018bh at CRAN
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Title: Quantile Regression
Description: Estimation and inference methods for models of conditional quantiles:
Linear and nonlinear parametric and non-parametric (total variation penalized) models
for conditional quantiles of a univariate response and several methods for handling
censored survival data. Portfolio selection methods based on expected shortfall
risk are also included.
Author: Roger Koenker [cre, aut],
Stephen Portnoy [ctb] (Contributions to Censored QR code),
Pin Tian Ng [ctb] (Contributions to Sparse QR code),
Achim Zeileis [ctb] (Contributions to dynrq code essentially identical
to his dynlm code),
Philip Grosjean [ctb] (Contributions to nlrq code),
Brian D Ripley [trl, ctb] (Initial (2001) R port from S (to my
everlasting shame -- how could I have been so slow to adopt R!) and
for numerous other suggestions and useful advice)
Maintainer: Roger Koenker <rkoenker@illinois.edu>
Diff between quantreg versions 5.38 dated 2018-12-18 and 5.40 dated 2019-06-03
DESCRIPTION | 6 MD5 | 14 - build/vignette.rds |binary inst/ChangeLog | 9 inst/doc/rq.pdf |binary src/boot.f | 12 src/crq.f | 708 ----------------------------------------------------- src/linpack.f |only src/mcmb.c |only 9 files changed, 20 insertions(+), 729 deletions(-)
Title: Projection Pursuit Based on Gaussian Mixtures and Evolutionary
Algorithms
Description: Projection Pursuit (PP) algorithm for dimension reduction based on Gaussian Mixture Models (GMMs) for density estimation using Genetic Algorithms (GAs) to maximise an approximated negentropy index.
Author: Alessio Serafini [aut, cre] (<https://orcid.org/0000-0002-8579-5695>),
Luca Scrucca [aut] (<https://orcid.org/0000-0003-3826-0484>)
Maintainer: Alessio Serafini <srf.alessio@gmail.com>
Diff between ppgmmga versions 1.0.1 dated 2018-10-15 and 1.1 dated 2019-06-03
ppgmmga-1.0.1/ppgmmga/README.md |only ppgmmga-1.1/ppgmmga/DESCRIPTION | 19 - ppgmmga-1.1/ppgmmga/MD5 | 35 +- ppgmmga-1.1/ppgmmga/NAMESPACE | 2 ppgmmga-1.1/ppgmmga/NEWS.md | 6 ppgmmga-1.1/ppgmmga/R/fitness.R | 12 ppgmmga-1.1/ppgmmga/R/functions.R | 21 + ppgmmga-1.1/ppgmmga/R/plots.R | 11 ppgmmga-1.1/ppgmmga/R/ppgmmga.R | 20 - ppgmmga-1.1/ppgmmga/R/zzz.R | 19 - ppgmmga-1.1/ppgmmga/build/vignette.rds |binary ppgmmga-1.1/ppgmmga/inst/CITATION | 16 - ppgmmga-1.1/ppgmmga/inst/doc/ppgmmga.R | 30 ++ ppgmmga-1.1/ppgmmga/inst/doc/ppgmmga.Rmd | 58 +++- ppgmmga-1.1/ppgmmga/inst/doc/ppgmmga.html | 398 ++++++++++++++++------------- ppgmmga-1.1/ppgmmga/man/plot.ppgmmga.Rd | 3 ppgmmga-1.1/ppgmmga/src/Makevars | 1 ppgmmga-1.1/ppgmmga/vignettes/ppgmmga.Rmd | 58 +++- ppgmmga-1.1/ppgmmga/vignettes/vignette.css | 96 ++++-- 19 files changed, 491 insertions(+), 314 deletions(-)
Title: Statistical Inference for Partially Observed Markov Processes
Description: Tools for data analysis with partially observed Markov process (POMP) models (also known as stochastic dynamical systems, hidden Markov models, and nonlinear, non-Gaussian, state-space models). The package provides facilities for implementing POMP models, simulating them, and fitting them to time series data by a variety of frequentist and Bayesian methods. It is also a versatile platform for implementation of inference methods for general POMP models.
Author: Aaron A. King [aut, cre],
Edward L. Ionides [aut],
Carles Breto [aut],
Stephen P. Ellner [ctb],
Matthew J. Ferrari [ctb],
Bruce E. Kendall [ctb],
Michael Lavine [ctb],
Dao Nguyen [ctb],
Daniel C. Reuman [ctb],
Helen Wearing [ctb],
Simon N. Wood [ctb],
Sebastian Funk [ctb],
Steven G. Johnson [ctb],
Eamon O'Dea [ctb]
Maintainer: Aaron A. King <kingaa@umich.edu>
Diff between pomp versions 1.19 dated 2018-12-13 and 2.1 dated 2019-06-03
pomp-1.19/pomp/R/abc_methods.R |only pomp-1.19/pomp/R/bsmc.R |only pomp-1.19/pomp/R/dmeasure_pomp.R |only pomp-1.19/pomp/R/dprior_pomp.R |only pomp-1.19/pomp/R/dprocess_pomp.R |only pomp-1.19/pomp/R/eulermultinom.R |only pomp-1.19/pomp/R/example.R |only pomp-1.19/pomp/R/generics.R |only pomp-1.19/pomp/R/initstate_pomp.R |only pomp-1.19/pomp/R/kalman_methods.R |only pomp-1.19/pomp/R/mif.R |only pomp-1.19/pomp/R/mif2_methods.R |only pomp-1.19/pomp/R/mif_methods.R |only pomp-1.19/pomp/R/minim.R |only pomp-1.19/pomp/R/nlf_funcs.R |only pomp-1.19/pomp/R/nlf_guts.R |only pomp-1.19/pomp/R/nlf_objfun.R |only pomp-1.19/pomp/R/pfilter_methods.R |only pomp-1.19/pomp/R/plot_pomp.R |only pomp-1.19/pomp/R/plugins.R |only pomp-1.19/pomp/R/pmcmc_methods.R |only pomp-1.19/pomp/R/pomp_methods.R |only pomp-1.19/pomp/R/rmeasure_pomp.R |only pomp-1.19/pomp/R/rprior_pomp.R |only pomp-1.19/pomp/R/rprocess_pomp.R |only pomp-1.19/pomp/R/simulate_pomp.R |only pomp-1.19/pomp/R/skeleton_pomp.R |only pomp-1.19/pomp/R/trajectory_pomp.R |only pomp-1.19/pomp/build |only pomp-1.19/pomp/demo |only pomp-1.19/pomp/inst/doc/index.md |only pomp-1.19/pomp/inst/examples |only pomp-1.19/pomp/man/bsmc.Rd |only pomp-1.19/pomp/man/eulermultinom.Rd |only pomp-1.19/pomp/man/example.Rd |only pomp-1.19/pomp/man/lowlevel.Rd |only pomp-1.19/pomp/man/mif.Rd |only pomp-1.19/pomp/man/package.Rd |only pomp-1.19/pomp/man/pomp_methods.Rd |only pomp-1.19/pomp/man/simulate_pomp.Rd |only pomp-1.19/pomp/src/eulermultinom.c |only pomp-1.19/pomp/src/initstate.c |only pomp-1.19/pomp/src/mif.c |only pomp-2.1/pomp/DESCRIPTION | 56 - pomp-2.1/pomp/MD5 | 395 +++++++---- pomp-2.1/pomp/NAMESPACE | 294 +++++--- pomp-2.1/pomp/R/aaa.R | 22 pomp-2.1/pomp/R/abc.R | 526 +++++++++------ pomp-2.1/pomp/R/accumulators.R |only pomp-2.1/pomp/R/as_data_frame.R |only pomp-2.1/pomp/R/as_pomp.R |only pomp-2.1/pomp/R/authors.R | 22 pomp-2.1/pomp/R/bake.R | 98 ++ pomp-2.1/pomp/R/basic_probes.R | 376 +++++------ pomp-2.1/pomp/R/blowflies.R |only pomp-2.1/pomp/R/bsflu.R |only pomp-2.1/pomp/R/bsmc2.R | 442 ++++++++----- pomp-2.1/pomp/R/bsplines.R | 92 ++ pomp-2.1/pomp/R/builder.R | 211 ++++-- pomp-2.1/pomp/R/coef.R |only pomp-2.1/pomp/R/concat.R |only pomp-2.1/pomp/R/cond_logLik.R |only pomp-2.1/pomp/R/continue.R |only pomp-2.1/pomp/R/covariate_table.R |only pomp-2.1/pomp/R/covmat.R | 178 +++-- pomp-2.1/pomp/R/csnippet.R | 83 ++ pomp-2.1/pomp/R/dacca.R |only pomp-2.1/pomp/R/deprecated.R |only pomp-2.1/pomp/R/design.R |only pomp-2.1/pomp/R/distributions.R |only pomp-2.1/pomp/R/dmeasure_spec.R |only pomp-2.1/pomp/R/dprocess_spec.R |only pomp-2.1/pomp/R/ebola.R |only pomp-2.1/pomp/R/eff_sample_size.R |only pomp-2.1/pomp/R/extract.R |only pomp-2.1/pomp/R/filter_mean.R |only pomp-2.1/pomp/R/filter_traj.R |only pomp-2.1/pomp/R/flow.R |only pomp-2.1/pomp/R/forecast.R |only pomp-2.1/pomp/R/gompertz.R |only pomp-2.1/pomp/R/kalman.R | 361 ++++++++-- pomp-2.1/pomp/R/listie.R |only pomp-2.1/pomp/R/load.R | 104 ++- pomp-2.1/pomp/R/loglik.R |only pomp-2.1/pomp/R/logmeanexp.R | 29 pomp-2.1/pomp/R/lookup.R |only pomp-2.1/pomp/R/measles.R |only pomp-2.1/pomp/R/melt.R |only pomp-2.1/pomp/R/mif2.R | 563 ++++++++++------ pomp-2.1/pomp/R/nlf.R | 1013 +++++++++++++++--------------- pomp-2.1/pomp/R/objfun.R |only pomp-2.1/pomp/R/obs.R |only pomp-2.1/pomp/R/ou2.R |only pomp-2.1/pomp/R/parameter_trans.R |only pomp-2.1/pomp/R/parmat.R | 32 pomp-2.1/pomp/R/parus.R |only pomp-2.1/pomp/R/pfilter.R | 475 +++++++------- pomp-2.1/pomp/R/pipe.R |only pomp-2.1/pomp/R/plot.R |only pomp-2.1/pomp/R/pmcmc.R | 526 ++++++++------- pomp-2.1/pomp/R/pomp-package.R |only pomp-2.1/pomp/R/pomp.R | 898 ++++++++++++-------------- pomp-2.1/pomp/R/pomp_class.R | 124 +-- pomp-2.1/pomp/R/pomp_fun.R | 179 +++-- pomp-2.1/pomp/R/pred_mean.R |only pomp-2.1/pomp/R/pred_var.R |only pomp-2.1/pomp/R/print.R |only pomp-2.1/pomp/R/prior_spec.R |only pomp-2.1/pomp/R/probe.R | 389 ++++++----- pomp-2.1/pomp/R/probe_match.R | 451 +++++++------ pomp-2.1/pomp/R/profile_design.R | 42 - pomp-2.1/pomp/R/proposals.R | 273 ++++---- pomp-2.1/pomp/R/pstop.R |only pomp-2.1/pomp/R/resample.R |only pomp-2.1/pomp/R/ricker.R |only pomp-2.1/pomp/R/rinit_spec.R |only pomp-2.1/pomp/R/rmeasure_spec.R |only pomp-2.1/pomp/R/rprocess_spec.R |only pomp-2.1/pomp/R/runif_design.R |only pomp-2.1/pomp/R/rw2.R |only pomp-2.1/pomp/R/safecall.R | 22 pomp-2.1/pomp/R/sannbox.R | 85 ++ pomp-2.1/pomp/R/show.R | 104 ++- pomp-2.1/pomp/R/simulate.R |only pomp-2.1/pomp/R/sir.R |only pomp-2.1/pomp/R/skeleton_spec.R |only pomp-2.1/pomp/R/slice_design.R | 44 - pomp-2.1/pomp/R/sobol.R | 77 +- pomp-2.1/pomp/R/spect.R | 622 +++++++++--------- pomp-2.1/pomp/R/spect_match.R | 563 +++++++++------- pomp-2.1/pomp/R/spy.R |only pomp-2.1/pomp/R/states.R |only pomp-2.1/pomp/R/summary.R |only pomp-2.1/pomp/R/templates.R | 60 - pomp-2.1/pomp/R/time.R |only pomp-2.1/pomp/R/timezero.R |only pomp-2.1/pomp/R/traces.R |only pomp-2.1/pomp/R/traj_match.R | 324 +++++---- pomp-2.1/pomp/R/trajectory.R |only pomp-2.1/pomp/R/transformations.R |only pomp-2.1/pomp/R/undefined.R |only pomp-2.1/pomp/R/userdata.R |only pomp-2.1/pomp/R/verhulst.R |only pomp-2.1/pomp/R/window.R |only pomp-2.1/pomp/R/workhorses.R |only pomp-2.1/pomp/data/LondonYorke.rda |binary pomp-2.1/pomp/data/blowflies.csv.xz |only pomp-2.1/pomp/data/bsflu.rda |only pomp-2.1/pomp/data/ebolaWA2014.rda |only pomp-2.1/pomp/data/ewcitmeas.rda |binary pomp-2.1/pomp/data/ewmeas.rda |binary pomp-2.1/pomp/data/parus.csv.gz |only pomp-2.1/pomp/inst/NEWS | 256 +++++++ pomp-2.1/pomp/inst/NEWS.Rd | 110 +++ pomp-2.1/pomp/inst/doc/index.html | 343 +++++++++- pomp-2.1/pomp/inst/include/pomp.h | 78 +- pomp-2.1/pomp/inst/include/pomp_defines.h | 95 +- pomp-2.1/pomp/man/abc.Rd | 258 +++---- pomp-2.1/pomp/man/accumulators.Rd |only pomp-2.1/pomp/man/as_data_frame.Rd |only pomp-2.1/pomp/man/as_pomp.Rd |only pomp-2.1/pomp/man/bake.Rd | 116 +-- pomp-2.1/pomp/man/basic_probes.Rd | 196 ++--- pomp-2.1/pomp/man/blowflies.Rd | 148 ++-- pomp-2.1/pomp/man/bsflu.Rd |only pomp-2.1/pomp/man/bsmc2.Rd |only pomp-2.1/pomp/man/bsplines.Rd | 83 +- pomp-2.1/pomp/man/coef.Rd |only pomp-2.1/pomp/man/concat.Rd |only pomp-2.1/pomp/man/cond_logLik.Rd |only pomp-2.1/pomp/man/continue.Rd |only pomp-2.1/pomp/man/covariate_table.Rd |only pomp-2.1/pomp/man/covmat.Rd |only pomp-2.1/pomp/man/csnippet.Rd |only pomp-2.1/pomp/man/dacca.Rd | 100 ++ pomp-2.1/pomp/man/deprecated.Rd |only pomp-2.1/pomp/man/design.Rd | 129 ++- pomp-2.1/pomp/man/distributions.Rd |only pomp-2.1/pomp/man/dmeasure.Rd |only pomp-2.1/pomp/man/dmeasure_spec.Rd |only pomp-2.1/pomp/man/dprior.Rd |only pomp-2.1/pomp/man/dprocess.Rd |only pomp-2.1/pomp/man/dprocess_spec.Rd |only pomp-2.1/pomp/man/ebola.Rd |only pomp-2.1/pomp/man/eff_sample_size.Rd |only pomp-2.1/pomp/man/filter_mean.Rd |only pomp-2.1/pomp/man/filter_traj.Rd |only pomp-2.1/pomp/man/flow.Rd |only pomp-2.1/pomp/man/forecast.Rd |only pomp-2.1/pomp/man/gompertz.Rd | 60 + pomp-2.1/pomp/man/hitch.Rd | 146 ++-- pomp-2.1/pomp/man/kalman.Rd | 179 ++--- pomp-2.1/pomp/man/listie.Rd |only pomp-2.1/pomp/man/load.Rd |only pomp-2.1/pomp/man/loglik.Rd |only pomp-2.1/pomp/man/logmeanexp.Rd | 41 - pomp-2.1/pomp/man/lookup.Rd |only pomp-2.1/pomp/man/measles.Rd | 50 - pomp-2.1/pomp/man/mif2.Rd | 361 ++++------ pomp-2.1/pomp/man/nlf.Rd | 307 +++++---- pomp-2.1/pomp/man/objfun.Rd |only pomp-2.1/pomp/man/obs.Rd |only pomp-2.1/pomp/man/ou2.Rd | 64 + pomp-2.1/pomp/man/pStop.Rd |only pomp-2.1/pomp/man/parameter_trans.Rd |only pomp-2.1/pomp/man/parmat.Rd | 36 - pomp-2.1/pomp/man/partrans.Rd |only pomp-2.1/pomp/man/parus.Rd |only pomp-2.1/pomp/man/pfilter.Rd | 292 +++----- pomp-2.1/pomp/man/plot.Rd |only pomp-2.1/pomp/man/pmcmc.Rd | 298 +++----- pomp-2.1/pomp/man/pomp-package.Rd |only pomp-2.1/pomp/man/pomp.Rd | 730 +++++---------------- pomp-2.1/pomp/man/pomp_class.Rd |only pomp-2.1/pomp/man/pomp_fun.Rd | 85 +- pomp-2.1/pomp/man/pred_mean.Rd |only pomp-2.1/pomp/man/pred_var.Rd |only pomp-2.1/pomp/man/print.Rd |only pomp-2.1/pomp/man/prior_spec.Rd |only pomp-2.1/pomp/man/probe.Rd | 368 +++------- pomp-2.1/pomp/man/probe_match.Rd |only pomp-2.1/pomp/man/proposals.Rd | 82 +- pomp-2.1/pomp/man/reexports.Rd |only pomp-2.1/pomp/man/resample.Rd |only pomp-2.1/pomp/man/ricker.Rd | 48 + pomp-2.1/pomp/man/rinit.Rd |only pomp-2.1/pomp/man/rinit_spec.Rd |only pomp-2.1/pomp/man/rmeasure.Rd |only pomp-2.1/pomp/man/rmeasure_spec.Rd |only pomp-2.1/pomp/man/rprior.Rd |only pomp-2.1/pomp/man/rprocess.Rd |only pomp-2.1/pomp/man/rprocess_spec.Rd |only pomp-2.1/pomp/man/rw2.Rd | 54 + pomp-2.1/pomp/man/rw_sd.Rd |only pomp-2.1/pomp/man/sannbox.Rd | 152 ++-- pomp-2.1/pomp/man/show.Rd |only pomp-2.1/pomp/man/simulate.Rd |only pomp-2.1/pomp/man/sir.Rd | 98 ++ pomp-2.1/pomp/man/skeleton.Rd |only pomp-2.1/pomp/man/skeleton_spec.Rd |only pomp-2.1/pomp/man/spect.Rd | 300 +++----- pomp-2.1/pomp/man/spect_match.Rd |only pomp-2.1/pomp/man/spy.Rd |only pomp-2.1/pomp/man/states.Rd |only pomp-2.1/pomp/man/summary.Rd |only pomp-2.1/pomp/man/time.Rd |only pomp-2.1/pomp/man/timezero.Rd |only pomp-2.1/pomp/man/traces.Rd |only pomp-2.1/pomp/man/traj_match.Rd | 270 +++---- pomp-2.1/pomp/man/trajectory.Rd |only pomp-2.1/pomp/man/transformations.Rd |only pomp-2.1/pomp/man/undefined.Rd |only pomp-2.1/pomp/man/userdata.Rd |only pomp-2.1/pomp/man/verhulst.Rd |only pomp-2.1/pomp/man/window.Rd |only pomp-2.1/pomp/man/workhorses.Rd |only pomp-2.1/pomp/src/distributions.c |only pomp-2.1/pomp/src/dmeasure.c | 313 ++++----- pomp-2.1/pomp/src/dprior.c | 94 +- pomp-2.1/pomp/src/dprocess.c | 409 ++++++------ pomp-2.1/pomp/src/euler.c | 437 +++++++----- pomp-2.1/pomp/src/gompertz.c | 71 +- pomp-2.1/pomp/src/init.c | 24 pomp-2.1/pomp/src/lookup_table.c | 55 - pomp-2.1/pomp/src/ou2.c | 43 - pomp-2.1/pomp/src/partrans.c | 198 +++-- pomp-2.1/pomp/src/pfilter.c | 90 -- pomp-2.1/pomp/src/pomp.h | 78 +- pomp-2.1/pomp/src/pomp_decls.h |only pomp-2.1/pomp/src/pomp_defines.h | 95 +- pomp-2.1/pomp/src/pomp_fun.c | 87 ++ pomp-2.1/pomp/src/pomp_internal.h | 132 --- pomp-2.1/pomp/src/probe.c | 66 - pomp-2.1/pomp/src/probe_acf.c | 83 +- pomp-2.1/pomp/src/resample.c | 36 - pomp-2.1/pomp/src/rinit.c |only pomp-2.1/pomp/src/rmeasure.c | 309 +++++---- pomp-2.1/pomp/src/rprior.c | 141 ++-- pomp-2.1/pomp/src/rprocess.c | 82 +- pomp-2.1/pomp/src/simulate.c | 226 ++---- pomp-2.1/pomp/src/skeleton.c | 440 +++++++++---- pomp-2.1/pomp/src/ssa.c | 296 ++++---- pomp-2.1/pomp/src/synth_lik.c | 8 pomp-2.1/pomp/src/trajectory.c | 377 +++-------- pomp-2.1/pomp/src/transformations.c |only pomp-2.1/pomp/src/userdata.c | 16 286 files changed, 11312 insertions(+), 8982 deletions(-)
Title: Portfolio Management with R
Description: Functions and examples for 'Portfolio
Management with R': backtesting investment and
trading strategies, computing profit/loss and
returns, analysing trades, handling lists of
transactions, reporting, and more.
Author: Enrico Schumann [aut, cre] (<https://orcid.org/0000-0001-7601-6576>)
Maintainer: Enrico Schumann <es@enricoschumann.net>
Diff between PMwR versions 0.11-0 dated 2019-04-01 and 0.11-1 dated 2019-06-03
ChangeLog | 32 ++- DESCRIPTION | 12 - MD5 | 64 +++--- NEWS | 14 + R/NAVseries.R | 2 R/btest.R | 11 - R/div_adjust.R | 33 +-- R/drawdowns.R | 6 R/internal.R | 19 - R/position.R | 4 R/quote32.R | 6 R/rebalance.R | 42 ++- R/scale1.R | 26 +- R/streaks.R | 4 R/trades.R | 9 R/unit_prices.R | 4 R/valuation.R | 18 - build/vignette.rds |binary inst/doc/An_overview_of_PMwR.pdf |binary inst/doc/Computing_returns.pdf |binary inst/doc/Drawdowns_streaks.pdf |binary inst/doc/FinTeX.pdf |binary inst/doc/pl_open_positions.pdf |binary inst/doc/q32.pdf |binary inst/unitTests/runTests.R | 4 inst/unitTests/test_results.txt | 17 - inst/unitTests/ut_PMwR.R | 415 ++++++++++++++++++++++----------------- man/PMwR-package.Rd | 6 man/btest.Rd | 5 man/drawdowns.Rd | 11 - man/pl.Rd | 11 - man/rebalance.Rd | 22 +- man/streaks.Rd | 33 ++- 33 files changed, 491 insertions(+), 339 deletions(-)
Title: Goodness of Fit Tests for Logistic Regression Models
Description: Functions to assess the goodness of fit of binary, multinomial and ordinal logistic models. Included are the Hosmer-Lemeshow tests (binary, multinomial and ordinal) and the Lipsitz and Pulkstenis-Robinson tests (ordinal).
Author: Matthew Jay [aut, cre]
Maintainer: Matthew Jay <matthew.jay.15@ucl.ac.uk>
Diff between generalhoslem versions 1.3.3 dated 2018-09-20 and 1.3.4 dated 2019-06-03
DESCRIPTION | 12 +-- MD5 | 18 ++--- R/lipsitz.test.R | 84 ++++++++++++----------- R/logitgof.R | 31 +++++--- R/pulkrob.chisq.R | 149 +++++++++++++++++++---------------------- R/pulkrob.deviance.R | 153 ++++++++++++++++++++----------------------- build/partial.rdb |binary man/generalhoslem-package.Rd | 3 man/lipsitz.test.Rd | 2 man/logitgof.Rd | 5 + 10 files changed, 232 insertions(+), 225 deletions(-)
Title: Exploratory Graph Analysis - A Framework for Estimating the
Number of Dimensions in Multivariate Data Using Network
Psychometrics
Description: An implementation of the Exploratory Graph Analysis (EGA) framework for dimensionality assessment. EGA is part of a new area called network psychometrics that focuses on the estimation of undirected network models in psychological datasets. EGA estimates the number of dimensions or factors using graphical lasso or Triangulated Maximally Filtered Graph (TMFG) and a weighted network community analysis. A bootstrap method for verifying the stability of the estimation is also available. The fit of the structure suggested by EGA can be verified using confirmatory factor analysis and a direct way to convert the EGA structure to a confirmatory factor model is also implemented. Documentation and examples are available. Golino, H. F., & Epskamp, S. (2017) <doi:10.1371/journal.pone.0174035>. Golino, H. F., & Demetriou, A. (2017) <doi:10.1016/j.intell.2017.02.007> Golino, H., Shi, D., Garrido, L. E., Christensen, A. P., Nieto, M. D., Sadana, R., & Thiyagarajan, J. A. (2018) <doi:10.31234/osf.io/gzcre>. Christensen, A. P. & Golino, H.F. (2019) <doi:10.31234/osf.io/9deay>.
Author: Hudson Golino [aut, cre],
Alexander Christensen [aut],
Maria Dolores Nieto [ctb],
Luis Eduardo Garrido [ctb]
Maintainer: Hudson Golino <hfg9s@virginia.edu>
Diff between EGAnet versions 0.4 dated 2019-05-02 and 0.5 dated 2019-06-03
DESCRIPTION | 34 ++++---- MD5 | 18 ++-- NAMESPACE | 6 + R/EGA.R | 225 ++++++++++++++++++++++++++++++++++++++++++++++-------- R/bootEGA.R | 2 R/entropyFit.R | 212 +++++++++++++++++++++++--------------------------- R/vn.entropy.R |only man/EGA.Rd | 18 ++-- man/bootEGA.Rd | 2 man/entropyFit.Rd | 18 ---- man/vn.entropy.Rd |only 11 files changed, 345 insertions(+), 190 deletions(-)
Title: Resistome Predicter
Description: This suite of packages is developed to predicts resistome for unknown chemical compounds. It utilizes two algorithms viz. deterministic model and stochastic model (manuscript under preparation) for the prediction of drug class. Once the drug class is predicted, the resistome profile of Escherichia coli and Pseudomonas aeruginosa for the drug class is fetched from the database.
Author: Saurav Bhaskar Saha and Pramod Wasudeo Ramteke
Maintainer: Saurav Bhaskar Saha <saurav.saha@shiats.edu.in>
Diff between uCAREChemSuiteCLI versions 0.1.2 dated 2018-06-07 and 0.2.0 dated 2019-06-03
uCAREChemSuiteCLI-0.1.2/uCAREChemSuiteCLI/README.md |only uCAREChemSuiteCLI-0.1.2/uCAREChemSuiteCLI/inst/extdata/Antiobiotic_data_set.txt |only uCAREChemSuiteCLI-0.2.0/uCAREChemSuiteCLI/DESCRIPTION | 14 uCAREChemSuiteCLI-0.2.0/uCAREChemSuiteCLI/LICENSE | 2 uCAREChemSuiteCLI-0.2.0/uCAREChemSuiteCLI/MD5 | 17 uCAREChemSuiteCLI-0.2.0/uCAREChemSuiteCLI/R/uCAREChemSuiteCLI.R | 433 uCAREChemSuiteCLI-0.2.0/uCAREChemSuiteCLI/inst/extdata/Antibiotic_data_set.csv |only uCAREChemSuiteCLI-0.2.0/uCAREChemSuiteCLI/inst/extdata/Antibiotic_data_set_Ecoli.csv |only uCAREChemSuiteCLI-0.2.0/uCAREChemSuiteCLI/inst/extdata/Antibiotic_data_set_Paeruginosa.csv |only uCAREChemSuiteCLI-0.2.0/uCAREChemSuiteCLI/inst/extdata/all_sdf_names.sdf | 4885 ++++++++++ uCAREChemSuiteCLI-0.2.0/uCAREChemSuiteCLI/man/drug.resistome.deterministic.Rd | 6 uCAREChemSuiteCLI-0.2.0/uCAREChemSuiteCLI/man/drug.resistome.stochastic.Rd | 8 12 files changed, 5137 insertions(+), 228 deletions(-)
More information about uCAREChemSuiteCLI at CRAN
Permanent link
Title: Common Methods of Spectral Data Analysis
Description: Fourier and Hilbert transforms are utilized to perform several
types of spectral analysis on the supplied data. Fragmented and irregularly
spaced data can be processed in terms of Lomb-Scargle method. Both,
FFT as well as LOMB methods take multivariate data. A user friendly
interface helps to interpret the results.
Author: Martin Seilmayer
Maintainer: Martin Seilmayer <m.seilmayer@hzdr.de>
Diff between spectral versions 1.0.1 dated 2016-09-15 and 1.3 dated 2019-06-03
spectral-1.0.1/spectral/R/00_pkg_setup.r |only spectral-1.0.1/spectral/R/RcppExports.R |only spectral-1.0.1/spectral/src |only spectral-1.3/spectral/DESCRIPTION | 23 spectral-1.3/spectral/MD5 | 67 - spectral-1.3/spectral/NAMESPACE | 39 - spectral-1.3/spectral/NEWS.md |only spectral-1.3/spectral/R/analyticFunction.R | 22 spectral-1.3/spectral/R/envelope.R | 8 spectral-1.3/spectral/R/examples/Error_Behaviour_LS_FFT.R |only spectral-1.3/spectral/R/examples/Error_Behaviour_QDT.R |only spectral-1.3/spectral/R/examples/lombExample.R | 102 ++ spectral-1.3/spectral/R/examples/lombExample2.R |only spectral-1.3/spectral/R/examples/specFFTExample.r | 55 + spectral-1.3/spectral/R/filterFFT.R | 2 spectral-1.3/spectral/R/filterLomb.R | 4 spectral-1.3/spectral/R/plotFFT.R | 2 spectral-1.3/spectral/R/plotLOMB.R | 305 ++++---- spectral-1.3/spectral/R/specFFT.R | 471 +++++++------ spectral-1.3/spectral/R/specLOMB.R | 484 +++++++++++--- spectral-1.3/spectral/R/waterfall.R | 15 spectral-1.3/spectral/man/BP.Rd | 61 - spectral-1.3/spectral/man/H.Rd | 41 - spectral-1.3/spectral/man/Windowfunctions.Rd | 71 +- spectral-1.3/spectral/man/analyticFunction.Rd | 127 +-- spectral-1.3/spectral/man/envelope.Rd | 85 +- spectral-1.3/spectral/man/filter.fft.Rd | 5 spectral-1.3/spectral/man/filter.lomb.Rd | 133 +-- spectral-1.3/spectral/man/gLmb.Rd |only spectral-1.3/spectral/man/interpolate.fft.Rd | 59 - spectral-1.3/spectral/man/lmb.Rd | 17 spectral-1.3/spectral/man/plot.fft.Rd | 45 - spectral-1.3/spectral/man/plot.lomb.Rd | 135 ++- spectral-1.3/spectral/man/spec.fft.Rd | 330 +++++---- spectral-1.3/spectral/man/spec.lomb.Rd | 277 +++++--- spectral-1.3/spectral/man/waterfall.Rd | 165 ++-- spectral-1.3/spectral/man/win.cos.Rd | 35 - spectral-1.3/spectral/man/win.tukey.Rd | 43 - 38 files changed, 1895 insertions(+), 1333 deletions(-)
Title: Datasets for 'gap'
Description: Datasets associated with the 'gap' package. Currently,
it includes an example data for regional association
plot (CDKN), an example data for a genomewide association
meta-analysis (OPG), Manhattan plots with (hr1420, mhtdata)
and without (w4) gene annotations.
Author: Jing Hua Zhao with suggestions from R-Core
Maintainer: Jing Hua Zhao <jinghuazhao@hotmail.com>
Diff between gap.datasets versions 0.0.2 dated 2017-11-27 and 0.0.4 dated 2019-06-03
gap.datasets-0.0.2/gap.datasets/data/CDKN.RData |only gap.datasets-0.0.2/gap.datasets/data/mhtdata.RData |only gap.datasets-0.0.4/gap.datasets/DESCRIPTION | 18 ++++++++++-------- gap.datasets-0.0.4/gap.datasets/MD5 | 18 ++++++++++-------- gap.datasets-0.0.4/gap.datasets/README.md | 6 ++++++ gap.datasets-0.0.4/gap.datasets/data/CDKN.rda |only gap.datasets-0.0.4/gap.datasets/data/OPG.rda |only gap.datasets-0.0.4/gap.datasets/data/datalist | 1 + gap.datasets-0.0.4/gap.datasets/data/hr1420.rda |binary gap.datasets-0.0.4/gap.datasets/data/mhtdata.rda |only gap.datasets-0.0.4/gap.datasets/data/w4.rda |binary gap.datasets-0.0.4/gap.datasets/man/OPG.Rd |only gap.datasets-0.0.4/gap.datasets/man/hr1420.Rd | 6 +++--- 13 files changed, 30 insertions(+), 19 deletions(-)
Title: Tools for Analyzing Climate Extremes
Description: Functions for fitting GEV and POT (via point process fitting)
models for extremes in climate data, providing return values, return
probabilities, and return periods for stationary and nonstationary models.
Also provides differences in return values and differences in log return
probabilities for contrasts of covariate values. Functions for estimating risk
ratios for event attribution analyses, including uncertainty. Under the hood,
many of the functions use functions from 'extRemes', including for fitting the
statistical models. Details are given in Paciorek, Stone, and Wehner (2018)
<doi:10.1016/j.wace.2018.01.002>.
Author: Christopher Paciorek [aut, cre],
Harinarayan Krishnan [ctb]
Maintainer: Christopher Paciorek <paciorek@stat.berkeley.edu>
Diff between climextRemes versions 0.2.0 dated 2018-02-06 and 0.2.1 dated 2019-06-03
climextRemes-0.2.0/climextRemes/inst/conda/README |only climextRemes-0.2.0/climextRemes/inst/conda/deploy.bat |only climextRemes-0.2.0/climextRemes/inst/conda/linux |only climextRemes-0.2.0/climextRemes/inst/conda/osx |only climextRemes-0.2.0/climextRemes/inst/conda/win |only climextRemes-0.2.0/climextRemes/inst/python_wrapper/README.rst |only climextRemes-0.2.0/climextRemes/inst/python_wrapper/VERSION |only climextRemes-0.2.0/climextRemes/inst/python_wrapper/docs/climextRemesDocumentation.pdf |only climextRemes-0.2.1/climextRemes/DESCRIPTION | 21 climextRemes-0.2.1/climextRemes/LICENSE |only climextRemes-0.2.1/climextRemes/MD5 | 102 - climextRemes-0.2.1/climextRemes/NEWS | 20 climextRemes-0.2.1/climextRemes/R/gev.R | 25 climextRemes-0.2.1/climextRemes/R/helper.R | 6 climextRemes-0.2.1/climextRemes/R/pot.R | 29 climextRemes-0.2.1/climextRemes/R/return_calcs.R | 12 climextRemes-0.2.1/climextRemes/R/risk_ratio.R | 6 climextRemes-0.2.1/climextRemes/inst/CITATION | 15 climextRemes-0.2.1/climextRemes/inst/README.md |only climextRemes-0.2.1/climextRemes/inst/conda/README.md |only climextRemes-0.2.1/climextRemes/inst/conda/deploy.sh | 43 climextRemes-0.2.1/climextRemes/inst/conda/noarch |only climextRemes-0.2.1/climextRemes/inst/pip |only climextRemes-0.2.1/climextRemes/inst/python/climextRemes_wrapper.py | 76 - climextRemes-0.2.1/climextRemes/inst/python_wrapper/COPYRIGHTS.txt |only climextRemes-0.2.1/climextRemes/inst/python_wrapper/LICENSE.txt | 45 climextRemes-0.2.1/climextRemes/inst/python_wrapper/README.md |only climextRemes-0.2.1/climextRemes/inst/python_wrapper/climextremes/__init__.py | 76 - climextRemes-0.2.1/climextRemes/inst/python_wrapper/climextremes/__pycache__/__init__.cpython-35.pyc |binary climextRemes-0.2.1/climextRemes/inst/python_wrapper/docs/build_sphinx_docs.sh | 4 climextRemes-0.2.1/climextRemes/inst/python_wrapper/docs/climextremesDocumentation.pdf |only climextRemes-0.2.1/climextRemes/inst/python_wrapper/docs/conf.py | 4 climextRemes-0.2.1/climextRemes/inst/python_wrapper/docs/html/_modules |only climextRemes-0.2.1/climextRemes/inst/python_wrapper/docs/html/_sources/index.rst.txt | 13 climextRemes-0.2.1/climextRemes/inst/python_wrapper/docs/html/_static/alabaster.css |only climextRemes-0.2.1/climextRemes/inst/python_wrapper/docs/html/_static/basic.css | 37 climextRemes-0.2.1/climextRemes/inst/python_wrapper/docs/html/_static/custom.css |only climextRemes-0.2.1/climextRemes/inst/python_wrapper/docs/html/_static/doctools.js | 14 climextRemes-0.2.1/climextRemes/inst/python_wrapper/docs/html/_static/documentation_options.js |only climextRemes-0.2.1/climextRemes/inst/python_wrapper/docs/html/_static/jquery-3.2.1.js |only climextRemes-0.2.1/climextRemes/inst/python_wrapper/docs/html/_static/jquery.js | 8 climextRemes-0.2.1/climextRemes/inst/python_wrapper/docs/html/_static/language_data.js |only climextRemes-0.2.1/climextRemes/inst/python_wrapper/docs/html/_static/pygments.css | 138 +- climextRemes-0.2.1/climextRemes/inst/python_wrapper/docs/html/_static/searchtools.js | 353 ----- climextRemes-0.2.1/climextRemes/inst/python_wrapper/docs/html/_static/websupport.js | 4 climextRemes-0.2.1/climextRemes/inst/python_wrapper/docs/html/genindex.html | 101 - climextRemes-0.2.1/climextRemes/inst/python_wrapper/docs/html/index.html | 631 +++++----- climextRemes-0.2.1/climextRemes/inst/python_wrapper/docs/html/objects.inv |binary climextRemes-0.2.1/climextRemes/inst/python_wrapper/docs/html/search.html | 91 - climextRemes-0.2.1/climextRemes/inst/python_wrapper/docs/html/searchindex.js | 2 climextRemes-0.2.1/climextRemes/inst/python_wrapper/setup.py | 40 climextRemes-0.2.1/climextRemes/inst/python_wrapper/test_installation.sh |only climextRemes-0.2.1/climextRemes/inst/python_wrapper/version.py |only climextRemes-0.2.1/climextRemes/inst/tests/test-gev-pot.R | 40 climextRemes-0.2.1/climextRemes/man/calc_riskRatio_binom.Rd | 2 climextRemes-0.2.1/climextRemes/man/calc_riskRatio_gev.Rd | 2 climextRemes-0.2.1/climextRemes/man/calc_riskRatio_pot.Rd | 6 climextRemes-0.2.1/climextRemes/man/fit_gev.Rd | 2 climextRemes-0.2.1/climextRemes/man/fit_pot.Rd | 2 59 files changed, 1000 insertions(+), 970 deletions(-)
Title: Simultaneous Threshold Interaction Modeling Algorithm
Description: Regression trunk model estimation proposed by Dusseldorp and Meulman (2004) <doi:10.1007/bf02295641>
and Dusseldorp, Conversano, Van Os (2010) <doi:10.1198/jcgs.2010.06089>, integrating a regression tree
and a multiple regression model.
Author: Elise Dusseldorp [aut, cre, cph],
Claudio Conversano [aut, cph],
Cor Ninaber [ctb],
Kristof Meers [ctb],
Peter Neufeglise [trl],
Juan Claramunt [ctb]
Maintainer: Elise Dusseldorp <elise.dusseldorp@fsw.leidenuniv.nl>
Diff between stima versions 1.2 dated 2018-08-29 and 1.2.1 dated 2019-06-03
DESCRIPTION | 6 +++--- MD5 | 24 ++++++++++++------------ R/bos.f.R | 2 +- R/boscat.f.R | 2 +- R/boscats.f.R | 2 +- R/cor.f.R | 2 +- R/cov.f.R | 2 +- R/mean.f.R | 2 +- R/resid.f.R | 2 +- R/rsq.f.R | 2 +- R/splitc.f.R | 2 +- R/stdev.f.R | 2 +- src/init.c | 44 ++++++++++++++++++++------------------------ 13 files changed, 45 insertions(+), 49 deletions(-)
Title: Functions for Constructing and Evaluating Self-Organizing Maps
Description: State of the art functions for constructing and evaluating self-organizing maps.
Author: Lutz Hamel [aut, cre],
Benjamin Ott [aut],
Gregory Breard [aut],
Robert Tatoian [aut],
Vishakh Gopu [aut]
Maintainer: Lutz Hamel <hamel@cs.uri.edu>
Diff between popsom versions 4.2 dated 2017-06-01 and 4.2.1 dated 2019-06-03
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/map-utils.R | 2 +- src/init.c | 8 ++------ 4 files changed, 9 insertions(+), 13 deletions(-)
Title: Parametric Estimation and Sensitivity Analysis of Direct and
Indirect Effects
Description: We implement functions to estimate and perform sensitivity analysis to unobserved confounding of direct and indirect effects introduced in Lindmark, de Luna and Eriksson (2018) <doi:10.1002/sim.7620>. The estimation and sensitivity analysis are parametric, based on probit and/or linear regression models. Sensitivity analysis is implemented for unobserved confounding of the exposure-mediator, mediator-outcome and exposure-outcome relationships.
Author: Anita Lindmark <anita.lindmark@umu.se>
Maintainer: Anita Lindmark <anita.lindmark@umu.se>
Diff between sensmediation versions 0.2.0 dated 2018-11-14 and 0.3.0 dated 2019-06-03
sensmediation-0.2.0/sensmediation/man/print.summaryeffectsMed.Rd |only sensmediation-0.3.0/sensmediation/DESCRIPTION | 22 sensmediation-0.3.0/sensmediation/MD5 | 36 sensmediation-0.3.0/sensmediation/NEWS.md | 16 sensmediation-0.3.0/sensmediation/R/calc.effects.R | 618 ++++++---- sensmediation-0.3.0/sensmediation/R/coefs.sensmed.R | 451 ++++--- sensmediation-0.3.0/sensmediation/R/data.R |only sensmediation-0.3.0/sensmediation/R/mediationmethods.R | 18 sensmediation-0.3.0/sensmediation/R/sensmediation.R | 365 ++--- sensmediation-0.3.0/sensmediation/data |only sensmediation-0.3.0/sensmediation/man/LogL.Rd | 16 sensmediation-0.3.0/sensmediation/man/RSdata.Rd |only sensmediation-0.3.0/sensmediation/man/calc.effects.Rd | 29 sensmediation-0.3.0/sensmediation/man/coefs.sensmed.Rd | 43 sensmediation-0.3.0/sensmediation/man/grr.Rd | 16 sensmediation-0.3.0/sensmediation/man/hess.Rd | 16 sensmediation-0.3.0/sensmediation/man/more.effects.Rd | 68 - sensmediation-0.3.0/sensmediation/man/partdevs.Rd | 15 sensmediation-0.3.0/sensmediation/man/sensmediation.Rd | 162 +- sensmediation-0.3.0/sensmediation/man/summary.effectsMed.Rd | 8 sensmediation-0.3.0/sensmediation/tests |only 21 files changed, 1063 insertions(+), 836 deletions(-)
Title: A Computational Tool for Aerobiological Data
Description: Different tools for managing databases of airborne particles, elaborating the main calculations and visualization of results. In a first step, data are checked using tools for quality control and all missing gaps are completed. Then, the main parameters of the pollen season are calculated and represented graphically. Multiple graphical tools are available: pollen calendars, phenological plots, time series, tendencies, interactive plots, abundance plots...
Author: Jesus Rojo <Jesus.Rojo@uclm.es>, Antonio Picornell <picornell@uma.es>, Jose Oteros <OterosJose@gmail.com>
Maintainer: "Jose Oteros" <OterosJose@gmail.com>
Diff between AeRobiology versions 2.0 dated 2019-04-15 and 2.0.1 dated 2019-06-03
DESCRIPTION | 6 +- MD5 | 11 ++-- NEWS.md | 8 +++ R/interpollen.R | 1 R/plot_hour.R | 25 +++++++++ inst/CITATION |only inst/doc/my-vignette.html | 120 +++++++++++++++++++++++----------------------- 7 files changed, 103 insertions(+), 68 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-03-19 2.0.11
2019-02-08 2.0.10
2019-01-16 2.0.7
2019-01-08 2.0.6
2018-12-12 2.0.5
2018-03-01 1.1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-07-10 1.2.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-03-09 0.2.1
2018-09-27 0.1.5
2018-08-30 0.1.4
2018-08-22 0.1.3
2018-01-17 0.1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-03-21 5.3.3
2012-08-16 5.3.1
2012-05-04 5.3
2011-09-19 5.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-08-07 0.54
2018-05-07 0.52
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-04-25 0.3.1
2019-01-30 0.3.0
2019-01-10 0.2.4
2018-11-15 0.2.3
2018-05-14 0.2.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-10-15 1.0.0
2018-07-12 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-05-15 2.0.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-04-23 1.0.6
2019-02-13 1.0.4
2019-01-18 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-05-14 1.2.16
2018-07-10 1.2.15
2016-08-30 1.2.14
2016-07-22 1.2.13
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-03-20 5.3.3
2012-08-16 5.3.1
2012-05-04 5.3
2011-09-19 5.2
Title: Tidy Temporal Data Frames and Tools
Description: Provides a 'tbl_ts' class (the 'tsibble') to store
and manage temporal data in a data-centric format, which is built on
top of the 'tibble'. The 'tsibble' aims at easily manipulating and
analysing temporal data, including counting and filling in time gaps,
aggregate over calendar periods, performing rolling window
calculations, and etc.
Author: Earo Wang [aut, cre] (<https://orcid.org/0000-0001-6448-5260>),
Di Cook [aut, ths] (<https://orcid.org/0000-0002-3813-7155>),
Rob Hyndman [aut, ths] (<https://orcid.org/0000-0002-2140-5352>),
Mitchell O'Hara-Wild [aut] (<https://orcid.org/0000-0001-6729-7695>)
Maintainer: Earo Wang <earo.wang@gmail.com>
Diff between tsibble versions 0.8.0 dated 2019-04-28 and 0.8.1 dated 2019-06-03
tsibble-0.8.0/tsibble/R/format.R |only tsibble-0.8.0/tsibble/R/tsibble-pkg.R |only tsibble-0.8.0/tsibble/R/utils-format.R |only tsibble-0.8.1/tsibble/DESCRIPTION | 14 - tsibble-0.8.1/tsibble/MD5 | 118 ++++----- tsibble-0.8.1/tsibble/NAMESPACE | 4 tsibble-0.8.1/tsibble/NEWS.md | 11 tsibble-0.8.1/tsibble/R/as-tsibble.R | 133 +++++----- tsibble-0.8.1/tsibble/R/data.R | 2 tsibble-0.8.1/tsibble/R/deprecated.R | 26 +- tsibble-0.8.1/tsibble/R/dplyr-join.R | 30 -- tsibble-0.8.1/tsibble/R/dplyr-verbs.R | 137 +++------- tsibble-0.8.1/tsibble/R/gaps.R | 46 +-- tsibble-0.8.1/tsibble/R/index-by.R | 64 +---- tsibble-0.8.1/tsibble/R/interval.R | 117 ++++++--- tsibble-0.8.1/tsibble/R/key-group.R | 26 -- tsibble-0.8.1/tsibble/R/new-data.R | 2 tsibble-0.8.1/tsibble/R/slide.R | 13 - tsibble-0.8.1/tsibble/R/stretch.R | 7 tsibble-0.8.1/tsibble/R/subset.R | 7 tsibble-0.8.1/tsibble/R/tidyr-verbs.R | 215 +++++++++-------- tsibble-0.8.1/tsibble/R/time-wise.R | 10 tsibble-0.8.1/tsibble/R/ts2tsibble.R | 11 tsibble-0.8.1/tsibble/R/tsibble-package.R |only tsibble-0.8.1/tsibble/R/update.R | 67 ++--- tsibble-0.8.1/tsibble/R/utils.R | 87 ++++-- tsibble-0.8.1/tsibble/R/zzz.R | 1 tsibble-0.8.1/tsibble/README.md | 10 tsibble-0.8.1/tsibble/inst/WORDLIST | 1 tsibble-0.8.1/tsibble/inst/doc/implicit-na.R | 2 tsibble-0.8.1/tsibble/inst/doc/implicit-na.Rmd | 2 tsibble-0.8.1/tsibble/inst/doc/implicit-na.html | 2 tsibble-0.8.1/tsibble/inst/doc/intro-tsibble.R | 2 tsibble-0.8.1/tsibble/inst/doc/intro-tsibble.Rmd | 2 tsibble-0.8.1/tsibble/inst/doc/intro-tsibble.html | 2 tsibble-0.8.1/tsibble/inst/doc/window.R | 8 tsibble-0.8.1/tsibble/inst/doc/window.Rmd | 8 tsibble-0.8.1/tsibble/inst/doc/window.html | 26 +- tsibble-0.8.1/tsibble/man/as-tsibble.Rd | 2 tsibble-0.8.1/tsibble/man/build_tsibble.Rd | 7 tsibble-0.8.1/tsibble/man/duplicates.Rd | 2 tsibble-0.8.1/tsibble/man/fill_gaps.Rd | 8 tsibble-0.8.1/tsibble/man/future-slide.Rd | 3 tsibble-0.8.1/tsibble/man/group_by_key.Rd | 3 tsibble-0.8.1/tsibble/man/index-by.Rd | 22 - tsibble-0.8.1/tsibble/man/pedestrian.Rd | 2 tsibble-0.8.1/tsibble/man/slide2.Rd | 10 tsibble-0.8.1/tsibble/man/tsibble-package.Rd | 4 tsibble-0.8.1/tsibble/man/tsibble-tidyverse.Rd | 106 ++------ tsibble-0.8.1/tsibble/man/tsibble.Rd | 4 tsibble-0.8.1/tsibble/man/update_tsibble.Rd | 2 tsibble-0.8.1/tsibble/tests/testthat/test-deprecated.R | 8 tsibble-0.8.1/tsibble/tests/testthat/test-dplyr.R | 3 tsibble-0.8.1/tsibble/tests/testthat/test-empty.R | 14 - tsibble-0.8.1/tsibble/tests/testthat/test-gaps.R | 4 tsibble-0.8.1/tsibble/tests/testthat/test-indexby.R | 4 tsibble-0.8.1/tsibble/tests/testthat/test-join.R | 10 tsibble-0.8.1/tsibble/tests/testthat/test-tidyr.R | 130 +++++++--- tsibble-0.8.1/tsibble/tests/testthat/test-tsibble.R | 9 tsibble-0.8.1/tsibble/vignettes/implicit-na.Rmd | 2 tsibble-0.8.1/tsibble/vignettes/intro-tsibble.Rmd | 2 tsibble-0.8.1/tsibble/vignettes/window.Rmd | 8 62 files changed, 816 insertions(+), 766 deletions(-)
Title: Dose Rate Modelling of Carbonate-Rich Samples
Description: Translation of the 'MATLAB' program 'Carb' (Nathan and Mauz 2008 <DOI:10.1016/j.radmeas.2007.12.012>; Mauz and Hoffmann 2014) for dose rate modelling for carbonate-rich samples in the context of trapped charged dating (e.g., luminescence dating) applications.
Author: Sebastian Kreutzer [aut, trl, cre, dtc]
(<https://orcid.org/0000-0002-0734-2199>),
Roger P. Nathan [aut, cph],
Barbara Mauz [aut, cph] (<https://orcid.org/0000-0003-1504-333X>)
Maintainer: Sebastian Kreutzer <sebastian.kreutzer@u-bordeaux-montaigne.fr>
Diff between RCarb versions 0.1.2 dated 2018-12-09 and 0.1.3 dated 2019-06-03
RCarb-0.1.2/RCarb/man/figures/Logo_RCarb.png |only RCarb-0.1.3/RCarb/DESCRIPTION | 16 RCarb-0.1.3/RCarb/MD5 | 38 - RCarb-0.1.3/RCarb/NAMESPACE | 2 RCarb-0.1.3/RCarb/NEWS.md | 47 +- RCarb-0.1.3/RCarb/R/RCarb-package.R | 51 +- RCarb-0.1.3/RCarb/R/calc_DoseRate.R | 183 ++++---- RCarb-0.1.3/RCarb/R/model_DoseRate.R | 59 ++ RCarb-0.1.3/RCarb/R/write_InputTemplate.R | 7 RCarb-0.1.3/RCarb/README.md |only RCarb-0.1.3/RCarb/build/partial.rdb |binary RCarb-0.1.3/RCarb/build/vignette.rds |binary RCarb-0.1.3/RCarb/data/Reference_Data.RData |binary RCarb-0.1.3/RCarb/inst/doc/GetStarted.html | 281 ++++++++++--- RCarb-0.1.3/RCarb/man/RCarb-package.Rd | 20 RCarb-0.1.3/RCarb/man/Reference_Data.Rd | 27 + RCarb-0.1.3/RCarb/man/figures/Logo_RCarb.svg |only RCarb-0.1.3/RCarb/man/figures/README-unnamed-chunk-2-1.png |only RCarb-0.1.3/RCarb/man/model_DoseRate.Rd | 26 - RCarb-0.1.3/RCarb/man/write_InputTemplate.Rd | 12 RCarb-0.1.3/RCarb/tests/testthat/test_model_DoseRate.R | 29 + RCarb-0.1.3/RCarb/vignettes/GetStarted.Rmd | 57 +- 22 files changed, 633 insertions(+), 222 deletions(-)