Title: Build Dependency Graphs using Projection
Description: Implements a general framework for creating dependency graphs using projection as introduced in Fan, Feng and Xia (2019)<arXiv:1501.01617>. Both lasso and sparse additive model projections are implemented. Both Pearson correlation and distance covariance options are available to generate the graph.
Author: Jianqing Fan, Yang Feng and Lucy Xia
Maintainer: Yang Feng <yang.feng@columbia.edu>
Diff between pgraph versions 0.8 dated 2016-10-13 and 1.5 dated 2019-06-25
CHANGELOG |only DESCRIPTION | 13 +++-- MD5 | 25 +++++----- R/funs.R | 44 +++++++++---------- R/greg.R | 129 +++++++++++++++++++++++++++++--------------------------- R/pgraph.R | 63 +++++++++++++-------------- R/projcore.R | 70 +++++++++++++++--------------- R/projcov.R | 37 +++++++++++----- R/roc.R | 32 ++++++------- man/greg.Rd | 1 man/pgraph.Rd | 11 ++-- man/projcore.Rd | 5 -- man/projcov.Rd | 13 +++-- man/roc.Rd | 1 14 files changed, 236 insertions(+), 208 deletions(-)
Title: Generalized Linear Mixed Models using Adaptive Gaussian
Quadrature
Description: Fits generalized linear mixed models for a single grouping factor under
maximum likelihood approximating the integrals over the random effects with an
adaptive Gaussian quadrature rule; Jose C. Pinheiro and Douglas M. Bates (1995)
<doi:10.1080/10618600.1995.10474663>.
Author: Dimitris Rizopoulos [aut, cre]
(<https://orcid.org/0000-0001-9397-0900>)
Maintainer: Dimitris Rizopoulos <d.rizopoulos@erasmusmc.nl>
Diff between GLMMadaptive versions 0.5-1 dated 2019-01-29 and 0.6-0 dated 2019-06-25
GLMMadaptive-0.5-1/GLMMadaptive/inst/doc/Dynamic_Predictions.R |only GLMMadaptive-0.5-1/GLMMadaptive/inst/doc/Dynamic_Predictions.Rmd |only GLMMadaptive-0.5-1/GLMMadaptive/inst/doc/Dynamic_Predictions.html |only GLMMadaptive-0.5-1/GLMMadaptive/inst/doc/Goodness_of_Fit.R |only GLMMadaptive-0.5-1/GLMMadaptive/inst/doc/Goodness_of_Fit.Rmd |only GLMMadaptive-0.5-1/GLMMadaptive/inst/doc/Goodness_of_Fit.html |only GLMMadaptive-0.5-1/GLMMadaptive/inst/doc/Multiple_Comparisons.R |only GLMMadaptive-0.5-1/GLMMadaptive/inst/doc/Multiple_Comparisons.Rmd |only GLMMadaptive-0.5-1/GLMMadaptive/inst/doc/Multiple_Comparisons.html |only GLMMadaptive-0.5-1/GLMMadaptive/inst/doc/Optimization.R |only GLMMadaptive-0.5-1/GLMMadaptive/inst/doc/Optimization.Rmd |only GLMMadaptive-0.5-1/GLMMadaptive/inst/doc/Optimization.html |only GLMMadaptive-0.5-1/GLMMadaptive/inst/doc/ZeroInflated_and_TwoPart_Models.R |only GLMMadaptive-0.5-1/GLMMadaptive/inst/doc/ZeroInflated_and_TwoPart_Models.Rmd |only GLMMadaptive-0.5-1/GLMMadaptive/inst/doc/ZeroInflated_and_TwoPart_Models.html |only GLMMadaptive-0.5-1/GLMMadaptive/vignettes/Dynamic_Predictions.Rmd |only GLMMadaptive-0.5-1/GLMMadaptive/vignettes/Goodness_of_Fit.Rmd |only GLMMadaptive-0.5-1/GLMMadaptive/vignettes/Multiple_Comparisons.Rmd |only GLMMadaptive-0.5-1/GLMMadaptive/vignettes/Optimization.Rmd |only GLMMadaptive-0.5-1/GLMMadaptive/vignettes/ZeroInflated_and_TwoPart_Models.Rmd |only GLMMadaptive-0.6-0/GLMMadaptive/DESCRIPTION | 8 GLMMadaptive-0.6-0/GLMMadaptive/MD5 | 69 GLMMadaptive-0.6-0/GLMMadaptive/NAMESPACE | 7 GLMMadaptive-0.6-0/GLMMadaptive/NEWS.md | 14 GLMMadaptive-0.6-0/GLMMadaptive/R/Fit_Funs.R | 61 GLMMadaptive-0.6-0/GLMMadaptive/R/Functions.R | 117 + GLMMadaptive-0.6-0/GLMMadaptive/R/methods.R | 400 +++- GLMMadaptive-0.6-0/GLMMadaptive/R/mixed_fit.R | 12 GLMMadaptive-0.6-0/GLMMadaptive/R/mixed_model.R | 155 + GLMMadaptive-0.6-0/GLMMadaptive/README.md | 5 GLMMadaptive-0.6-0/GLMMadaptive/build/vignette.rds |binary GLMMadaptive-0.6-0/GLMMadaptive/inst/doc/Custom_Models.html | 863 +++++---- GLMMadaptive-0.6-0/GLMMadaptive/inst/doc/GLMMadaptive_basics.R | 74 GLMMadaptive-0.6-0/GLMMadaptive/inst/doc/GLMMadaptive_basics.Rmd | 52 GLMMadaptive-0.6-0/GLMMadaptive/inst/doc/GLMMadaptive_basics.html | 631 ++++-- GLMMadaptive-0.6-0/GLMMadaptive/inst/doc/Methods_MixMod.R | 52 GLMMadaptive-0.6-0/GLMMadaptive/inst/doc/Methods_MixMod.Rmd | 10 GLMMadaptive-0.6-0/GLMMadaptive/inst/doc/Methods_MixMod.html | 906 ++++++---- GLMMadaptive-0.6-0/GLMMadaptive/man/GLMMadaptive.Rd | 4 GLMMadaptive-0.6-0/GLMMadaptive/man/continuation_ratio.Rd |only GLMMadaptive-0.6-0/GLMMadaptive/man/effectPlotData.Rd | 9 GLMMadaptive-0.6-0/GLMMadaptive/man/extra_fams.Rd | 2 GLMMadaptive-0.6-0/GLMMadaptive/man/figures/logo.png |binary GLMMadaptive-0.6-0/GLMMadaptive/man/methods.Rd | 16 GLMMadaptive-0.6-0/GLMMadaptive/vignettes/GLMMadaptive_basics.Rmd | 52 GLMMadaptive-0.6-0/GLMMadaptive/vignettes/Methods_MixMod.Rmd | 10 46 files changed, 2213 insertions(+), 1316 deletions(-)
Title: R Source Code Similarity Evaluation
Description: An implementation of a novel method to quantify the similarity
the code-base of R functions by means of program dependence graphs.
Possible use cases include detection of code clones for improving
software quality and of plagiarism among students' homework assignments.
Author: Maciej Bartoszuk [aut, cre] (<https://orcid.org/0000-0001-6088-8273>),
Marek Gagolewski [aut] (<https://orcid.org/0000-0003-0637-6028>)
Maintainer: Maciej Bartoszuk <bartoszuk@rexamine.com>
Diff between SimilaR versions 1.0.3 dated 2019-02-25 and 1.0.4 dated 2019-06-25
DESCRIPTION | 33 MD5 | 34 R/SimilaR_fromDirectory.R | 138 +- R/SimilaR_fromTwoFunctions.R | 144 +- R/SimilaR_general.R | 18 R/antiplagiarism.R | 2 R/load.R | 26 R/similar-package.R | 4 man/SimilaR_fromDirectory.Rd | 123 +- man/SimilaR_fromTwoFunctions.Rd | 117 +- src/CDG.cpp | 1064 +++++++++++++++++-- src/CDG.h | 20 src/PDG.cpp | 18 src/postprocessingPDG.cpp | 274 +++-- src/postprocessingPDG.h | 2 tests/testthat/test-SimilaR_fromDirectory.R | 46 tests/testthat/test-SimilaR_fromTwoFunctions.R | 100 + tests/testthat/test-algorithm.R | 1337 +++++++++++++++++++++++++ 18 files changed, 3032 insertions(+), 468 deletions(-)
Title: Fast Statistical Hypothesis Tests on Rows and Columns of
Matrices
Description: Functions to perform fast statistical hypothesis tests on rows/columns of matrices.
The main goals are: 1) speed via vectorization, 2) output that is detailed and easy to use,
3) compatibility with tests implemented in R (like those available in the 'stats' package).
Author: Karolis Koncevičius [aut, cre]
Maintainer: Karolis Koncevičius <karolis.koncevicius@gmail.com>
Diff between matrixTests versions 0.1.3 dated 2019-06-10 and 0.1.4 dated 2019-06-25
DESCRIPTION | 6 ++-- MD5 | 34 ++++++++++++++++++------- NEWS | 21 +++++++++++++-- R/bartlett.R | 6 ++-- R/kruskal.R | 4 +- R/oneway.R | 16 +++++------ R/utils.general.R | 27 +++++++++++++++---- R/wilcox.R | 12 ++++---- inst |only tests/testthat/test-col-versions.R |only tests/testthat/test-correct-kruskalwallis.R | 19 +++++++++++++ tests/testthat/test-parameters-special-cases.R | 15 +++++++++++ 12 files changed, 121 insertions(+), 39 deletions(-)
Title: Group Sequential Refined Secondary Boundary
Description: A gate-keeping procedure to test a primary and a secondary endpoint in a group sequential design with multiple interim looks. Computations related to group sequential primary and secondary boundaries. Refined secondary boundaries are calculated for a gate-keeping test on a primary and a secondary endpoint in a group sequential design with multiple interim looks. The choices include both the standard boundaries and the boundaries using error spending functions. Version 1.0.0 was released on April 12, 2017. See Tamhane et al. (2018), "A gatekeeping procedure to test a primary and a secondary endpoint in a group sequential design with multiple interim looks", Biometrics, 74(1), 40-48.
Author: Jiangtao Gou and Fengqing (Zoe) Zhang
Maintainer: Jiangtao Gou <gouRpackage@gmail.com>
Diff between gsrsb versions 1.0.3 dated 2017-04-28 and 1.1.1 dated 2019-06-25
gsrsb-1.0.3/gsrsb/man/p.adjust.gtxr.Rd |only gsrsb-1.1.1/gsrsb/DESCRIPTION | 14 - gsrsb-1.1.1/gsrsb/MD5 | 41 +-- gsrsb-1.1.1/gsrsb/NAMESPACE | 1 gsrsb-1.1.1/gsrsb/R/refinedBoundaries.R | 296 ++++++---------------- gsrsb-1.1.1/gsrsb/man/cdBoundary.Rd | 4 gsrsb-1.1.1/gsrsb/man/genCorrMat.Rd | 4 gsrsb-1.1.1/gsrsb/man/initLocPeak.Rd | 10 gsrsb-1.1.1/gsrsb/man/ldInitLocPeak.Rd | 9 gsrsb-1.1.1/gsrsb/man/ldNominalSig.Rd | 9 gsrsb-1.1.1/gsrsb/man/ldPrimaryBoundary.Rd | 2 gsrsb-1.1.1/gsrsb/man/ldSecControl.Rd | 2 gsrsb-1.1.1/gsrsb/man/ldSecondaryBoundary.Rd | 10 gsrsb-1.1.1/gsrsb/man/nominalSig.Rd | 2 gsrsb-1.1.1/gsrsb/man/primaryBoundaryVec.Rd | 14 - gsrsb-1.1.1/gsrsb/man/psbTeXtable.Rd | 13 gsrsb-1.1.1/gsrsb/man/refinedBoundary.Rd | 13 gsrsb-1.1.1/gsrsb/man/secControl.Rd | 2 gsrsb-1.1.1/gsrsb/man/secondaryBoundary.Rd | 13 gsrsb-1.1.1/gsrsb/man/secondaryBoundaryVec.Rd | 14 - gsrsb-1.1.1/gsrsb/man/secondaryBoundaryVecLD.Rd | 16 - gsrsb-1.1.1/gsrsb/man/secondaryBoundaryVecOrig.Rd | 14 - 22 files changed, 175 insertions(+), 328 deletions(-)
Title: Dave Armstrong's Miscellaneous Functions
Description: Miscellaneous set of functions I use in my teaching either at the University of Western Ontario or the Inter-university Consortium for Political and Social Research (ICPSR) Summer Program in Quantitative Methods. Broadly, the functions help with presentation and interpretation of LMs and GLMs, but also implement some new tools like Alternating Least Squares Optimal Scaling for dependent variables, a Bayesian analog to the ALSOS algorithm. There are also tools to help understand interactions in both LMs and binary GLMs.
Author: Dave Armstrong [aut, cre]
Maintainer: Dave Armstrong <dave@quantoid.net>
Diff between DAMisc versions 1.4-3 dated 2016-07-04 and 1.5 dated 2019-06-25
DESCRIPTION | 21 MD5 | 109 +- NAMESPACE | 71 + R/DAMisc_functions.R | 2316 +++++++++++++++++++++++++++++++++++++------------ man/BGMtest.Rd | 4 man/DAMisc-package.Rd | 6 man/DAintfun.Rd | 18 man/DAintfun2.Rd | 8 man/DAintfun3.Rd |only man/NKnots.Rd | 11 man/NKnotsTest.Rd | 14 man/alsosDV.Rd |only man/aveEffPlot.Rd | 7 man/balsos.Rd |only man/binfit.Rd | 2 man/btscs.Rd | 2 man/cat2Table.Rd | 2 man/changeSig.Rd |only man/combTest.Rd | 2 man/crSpanTest.Rd | 2 man/crTest.Rd | 9 man/cv.lo2.Rd |only man/glmChange.Rd | 2 man/glmChange2.Rd | 15 man/inspect.Rd |only man/intEff.Rd | 7 man/intQualQuant.Rd | 3 man/loessDeriv.Rd |only man/logit_cc.Rd | 2 man/makeHypSurv.Rd |only man/mnlAveEffPlot.Rd | 2 man/mnlChange.Rd | 2 man/mnlChange2.Rd | 2 man/mnlSig.Rd | 2 man/mnlfit.Rd | 2 man/oc2plot.Rd |only man/ordAveEffPlot.Rd | 2 man/ordChange.Rd | 2 man/ordChange2.Rd | 2 man/ordFit.Rd | 2 man/outEff.Rd |only man/outXT.Rd | 2 man/panel.2cat.Rd | 2 man/panel.ci.Rd | 15 man/panel.doublerug.Rd | 2 man/panel.transci.Rd | 5 man/plot.balsos.Rd |only man/plot.loess.Rd |only man/poisGOF.Rd | 2 man/poisfit.Rd |only man/pre.Rd | 2 man/prepanel.ci.Rd | 15 man/print.diffci.Rd |only man/print.pre.Rd | 2 man/probci.Rd |only man/probgroup.Rd |only man/scaleDataFrame.Rd | 2 man/searchVarLabels.Rd | 4 man/secondDiff.Rd |only man/simPredpolr.Rd | 2 man/test.balsos.Rd |only man/testGAMint.Rd |only man/testLoess.Rd | 2 man/tscslag.Rd |only man/yj_trans.Rd |only man/ziChange.Rd | 2 66 files changed, 1981 insertions(+), 729 deletions(-)
Title: 'Rcpp' Bindings to Parser for Tom's Obvious Markup Language
Description: The configuration format defined by 'TOML' (which expands to
"Tom's Obvious Markup Language") specifies an excellent format (described at
<https://github.com/toml-lang/toml>) suitable for both human editing as well
as the common uses of a machine-readable format. This package uses 'Rcpp' to
connect the 'cpptoml' parser written by Chase Geigle (in modern C++11) to R.
Author: Dirk Eddelbuettel
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppTOML versions 0.1.5 dated 2018-10-31 and 0.1.6 dated 2019-06-25
RcppTOML-0.1.5/RcppTOML/tests/arrays.R |only RcppTOML-0.1.5/RcppTOML/tests/arrays.Rout.save |only RcppTOML-0.1.5/RcppTOML/tests/arrays.toml |only RcppTOML-0.1.5/RcppTOML/tests/bool_datetime.R |only RcppTOML-0.1.5/RcppTOML/tests/bool_datetime.Rout.save |only RcppTOML-0.1.5/RcppTOML/tests/bool_datetime.toml |only RcppTOML-0.1.5/RcppTOML/tests/dates_and_times.R |only RcppTOML-0.1.5/RcppTOML/tests/dates_and_times.toml |only RcppTOML-0.1.5/RcppTOML/tests/float.R |only RcppTOML-0.1.5/RcppTOML/tests/float.Rout.save |only RcppTOML-0.1.5/RcppTOML/tests/float.toml |only RcppTOML-0.1.5/RcppTOML/tests/integer.R |only RcppTOML-0.1.5/RcppTOML/tests/integer.Rout.save |only RcppTOML-0.1.5/RcppTOML/tests/integer.toml |only RcppTOML-0.1.5/RcppTOML/tests/misc.R |only RcppTOML-0.1.5/RcppTOML/tests/misc.Rout.save |only RcppTOML-0.1.5/RcppTOML/tests/strings.R |only RcppTOML-0.1.5/RcppTOML/tests/strings.Rout.save |only RcppTOML-0.1.5/RcppTOML/tests/strings.toml |only RcppTOML-0.1.5/RcppTOML/tests/tables.R |only RcppTOML-0.1.5/RcppTOML/tests/tables.Rout.save |only RcppTOML-0.1.5/RcppTOML/tests/tables.toml |only RcppTOML-0.1.5/RcppTOML/tests/tomlExamples.R |only RcppTOML-0.1.5/RcppTOML/tests/tomlExamples.Rout.save |only RcppTOML-0.1.5/RcppTOML/tests/toml_example-v0.4.0.toml |only RcppTOML-0.1.5/RcppTOML/tests/toml_example.toml |only RcppTOML-0.1.5/RcppTOML/tests/toml_hard_example.toml |only RcppTOML-0.1.6/RcppTOML/ChangeLog | 79 +++++++++++++++++ RcppTOML-0.1.6/RcppTOML/DESCRIPTION | 9 + RcppTOML-0.1.6/RcppTOML/MD5 | 57 +++++------- RcppTOML-0.1.6/RcppTOML/README.md | 22 ++++ RcppTOML-0.1.6/RcppTOML/inst/NEWS.Rd | 15 +++ RcppTOML-0.1.6/RcppTOML/inst/tinytest |only RcppTOML-0.1.6/RcppTOML/src/parse.cpp | 17 +-- RcppTOML-0.1.6/RcppTOML/tests/tinytest.R |only 35 files changed, 154 insertions(+), 45 deletions(-)
Title: Clinical Trial Designs in 'rstan'
Description: A collection of clinical trial designs and methods, implemented in
'rstan' and R, including: the Continual Reassessment Method by O'Quigley et
al. (1990) <doi:10.2307/2531628>; EffTox by Thall & Cook (2004)
<doi:10.1111/j.0006-341X.2004.00218.x>; and the Augmented Binary method by
Wason & Seaman (2013) <doi:10.1002/sim.5867>; and more. We provide functions
to aid model-fitting and analysis. The 'rstan' implementations may also
serve as a cookbook to anyone looking to extend or embellish these models.
We hope that this package encourages the use of Bayesian methods in clinical
trials. There is a preponderance of early phase trial designs because this
is where Bayesian methods are used most. If there is a method you would like
implemented, please get in touch.
Author: Kristian Brock [aut, cre] (<https://orcid.org/0000-0002-3921-0166>),
Trustees of Columbia University [cph]
Maintainer: Kristian Brock <kristian.brock@gmail.com>
Diff between trialr versions 0.1.1 dated 2019-05-24 and 0.1.2 dated 2019-06-25
trialr-0.1.1/trialr/inst/doc/trialr-overview.R |only trialr-0.1.1/trialr/inst/doc/trialr-overview.Rmd |only trialr-0.1.1/trialr/inst/doc/trialr-overview.html |only trialr-0.1.2/trialr/DESCRIPTION | 35 - trialr-0.1.2/trialr/MD5 | 86 +- trialr-0.1.2/trialr/NAMESPACE | 24 trialr-0.1.2/trialr/NEWS.md | 13 trialr-0.1.2/trialr/R/CRM.R | 2 trialr-0.1.2/trialr/R/augbin_2t_1a_fit.R |only trialr-0.1.2/trialr/R/augbin_fit.R |only trialr-0.1.2/trialr/R/binary_prob_success.R |only trialr-0.1.2/trialr/R/crm_prior_beliefs.R | 2 trialr-0.1.2/trialr/R/efftox_utility_density_plot.R | 2 trialr-0.1.2/trialr/R/prior_predictive_augbin_2t_1a.R |only trialr-0.1.2/trialr/R/prob_success.R |only trialr-0.1.2/trialr/R/rlkjcorr.R |only trialr-0.1.2/trialr/R/stan_augbin.R |only trialr-0.1.2/trialr/R/stan_augbin_demo.R |only trialr-0.1.2/trialr/R/stan_crm.R | 39 + trialr-0.1.2/trialr/R/stan_hierarchical_response_thall.R | 4 trialr-0.1.2/trialr/R/trialr_simulate.R |only trialr-0.1.2/trialr/README.md | 130 ++-- trialr-0.1.2/trialr/inst/doc/BEBOP.html | 69 +- trialr-0.1.2/trialr/inst/doc/CRM-pathways.R | 56 + trialr-0.1.2/trialr/inst/doc/CRM-pathways.Rmd | 56 + trialr-0.1.2/trialr/inst/doc/CRM-pathways.html | 135 ++-- trialr-0.1.2/trialr/inst/doc/CRM-visualisation.html | 45 + trialr-0.1.2/trialr/inst/doc/CRM.html | 99 ++- trialr-0.1.2/trialr/inst/doc/EffTox.html | 75 +- trialr-0.1.2/trialr/inst/doc/HierarchicalBayesianResponse.html | 289 +++++----- trialr-0.1.2/trialr/inst/doc/LevyCaseStudy.html | 49 + trialr-0.1.2/trialr/inst/doc/TITE-CRM.html | 33 + trialr-0.1.2/trialr/man/as_tibble.augbin_2t_1a_fit.Rd |only trialr-0.1.2/trialr/man/augbin_2t_1a_fit.Rd |only trialr-0.1.2/trialr/man/augbin_fit.Rd |only trialr-0.1.2/trialr/man/binary_prob_success.Rd |only trialr-0.1.2/trialr/man/crm_prior_beliefs.Rd | 2 trialr-0.1.2/trialr/man/figures/README-unnamed-chunk-14-1.png |binary trialr-0.1.2/trialr/man/figures/README-unnamed-chunk-6-1.png |binary trialr-0.1.2/trialr/man/predict.augbin_2t_1a_fit.Rd |only trialr-0.1.2/trialr/man/print.augbin_fit.Rd |only trialr-0.1.2/trialr/man/print.crm_fit.Rd | 2 trialr-0.1.2/trialr/man/prior_predictive_augbin_2t_1a.Rd |only trialr-0.1.2/trialr/man/prob_success.Rd |only trialr-0.1.2/trialr/man/rlkjcorr.Rd |only trialr-0.1.2/trialr/man/stan_augbin.Rd |only trialr-0.1.2/trialr/man/stan_augbin_demo.Rd |only trialr-0.1.2/trialr/man/stan_crm.Rd | 39 + trialr-0.1.2/trialr/man/stan_hierarchical_response_thall.Rd | 4 trialr-0.1.2/trialr/man/trialr_simulate.Rd |only trialr-0.1.2/trialr/src/stan_files/AugBin2T1A.stan |only trialr-0.1.2/trialr/tests/testthat/test_crm_dtps.R | 1 trialr-0.1.2/trialr/tests/testthat/test_efftox_utility_density_plot.R |only trialr-0.1.2/trialr/tests/testthat/test_rlkjcorr.R |only trialr-0.1.2/trialr/tests/testthat/test_stan_augbin.R |only trialr-0.1.2/trialr/vignettes/CRM-pathways.Rmd | 56 + trialr-0.1.2/trialr/vignettes/EffTox_files/figure-html/unnamed-chunk-5-1.png |binary trialr-0.1.2/trialr/vignettes/EffTox_files/figure-html/unnamed-chunk-6-1.png |binary 58 files changed, 829 insertions(+), 518 deletions(-)
Title: Importing Real-Time Thermo Cycler (qPCR) Data from RDML Format
Files
Description: Imports real-time thermo cycler (qPCR) data from Real-time PCR
Data Markup Language (RDML) and transforms to the appropriate formats of
the 'qpcR' and 'chipPCR' packages. Contains a dendrogram visualization
for the structure of RDML object and GUI for RDML editing.
Author: Konstantin A. Blagodatskikh [cre, aut],
Stefan Roediger [aut],
Michal Burdukiewicz [aut] (<https://orcid.org/0000-0001-8926-582X>),
Andrej-Nikolai Spiess [aut]
Maintainer: Konstantin A. Blagodatskikh <k.blag@yandex.ru>
Diff between RDML versions 0.9-9 dated 2017-09-25 and 1.0 dated 2019-06-25
RDML-0.9-9/RDML/build |only RDML-0.9-9/RDML/inst/RDMLedit/www/css |only RDML-0.9-9/RDML/inst/RDMLedit/www/js/scripts.js |only RDML-0.9-9/RDML/inst/RDMLedit/www/js/single_double_click.js |only RDML-0.9-9/RDML/inst/doc |only RDML-0.9-9/RDML/vignettes |only RDML-1.0/RDML/.Rinstignore |only RDML-1.0/RDML/CHANGELOG | 174 RDML-1.0/RDML/DESCRIPTION | 20 RDML-1.0/RDML/LICENSE | 2 RDML-1.0/RDML/MD5 | 168 RDML-1.0/RDML/NAMESPACE | 126 RDML-1.0/RDML/R/RDML.AsTable.R | 326 RDML-1.0/RDML/R/RDML.GetFData.R | 128 RDML-1.0/RDML/R/RDML.Merge.R | 124 RDML-1.0/RDML/R/RDML.R | 661 - RDML-1.0/RDML/R/RDML.SetFData.R | 383 RDML-1.0/RDML/R/RDML.init.R | 2804 ++--- RDML-1.0/RDML/R/RDML.types.R | 6228 +++++------- RDML-1.0/RDML/README.md | 101 RDML-1.0/RDML/inst/RDMLedit/rdml.extensions.R | 258 RDML-1.0/RDML/inst/RDMLedit/server.R | 5301 +++++----- RDML-1.0/RDML/inst/RDMLedit/ui.R | 1472 +- RDML-1.0/RDML/man/AsDendrogram-function.Rd | 32 RDML-1.0/RDML/man/GetFData-function.Rd | 32 RDML-1.0/RDML/man/MergeRDMLs.Rd | 54 RDML-1.0/RDML/man/RDML.Rd | 389 RDML-1.0/RDML/man/adpsType.Rd | 118 RDML-1.0/RDML/man/annotationType.Rd | 50 RDML-1.0/RDML/man/ascharacteridType-method.Rd | 36 RDML-1.0/RDML/man/ascharacterreactIdType-method.Rd | 36 RDML-1.0/RDML/man/asdendrogram-method.Rd | 66 RDML-1.0/RDML/man/astable-function.Rd | 32 RDML-1.0/RDML/man/astable-method.Rd | 164 RDML-1.0/RDML/man/baseTemperatureType.Rd | 76 RDML-1.0/RDML/man/cdnaSynthesisMethodType.Rd | 58 RDML-1.0/RDML/man/commercialAssayType.Rd | 48 RDML-1.0/RDML/man/cqDetectionMethodType.Rd | 60 RDML-1.0/RDML/man/dataCollectionSoftwareType.Rd | 56 RDML-1.0/RDML/man/dataType.Rd | 112 RDML-1.0/RDML/man/documentationType.Rd | 48 RDML-1.0/RDML/man/dyeType.Rd | 46 RDML-1.0/RDML/man/enumType.Rd | 44 RDML-1.0/RDML/man/experimentType.Rd | 70 RDML-1.0/RDML/man/experimenterType.Rd | 56 RDML-1.0/RDML/man/extractdatapoints-method.Rd | 44 RDML-1.0/RDML/man/getfdata-method.Rd | 94 RDML-1.0/RDML/man/gradientType.Rd | 58 RDML-1.0/RDML/man/idReferencesType.Rd | 48 RDML-1.0/RDML/man/idType.Rd | 44 RDML-1.0/RDML/man/labelFormatType.Rd | 58 RDML-1.0/RDML/man/lidOpenType.Rd | 42 RDML-1.0/RDML/man/loopType.Rd | 58 RDML-1.0/RDML/man/mdpsType.Rd | 64 RDML-1.0/RDML/man/measureType.Rd | 54 RDML-1.0/RDML/man/new-method.Rd | 122 RDML-1.0/RDML/man/nucleotideType.Rd | 62 RDML-1.0/RDML/man/oligoType.Rd | 54 RDML-1.0/RDML/man/pauseType.Rd | 50 RDML-1.0/RDML/man/pcrFormatType.Rd | 88 RDML-1.0/RDML/man/primingMethodType.Rd | 64 RDML-1.0/RDML/man/quantityType.Rd | 48 RDML-1.0/RDML/man/quantityUnitType.Rd | 66 RDML-1.0/RDML/man/rdmlBaseType.Rd | 56 RDML-1.0/RDML/man/rdmlEdit.Rd | 26 RDML-1.0/RDML/man/rdmlIdType.Rd | 60 RDML-1.0/RDML/man/reactIdType.Rd | 44 RDML-1.0/RDML/man/reactType.Rd | 126 RDML-1.0/RDML/man/runType.Rd | 102 RDML-1.0/RDML/man/sampleType.Rd | 106 RDML-1.0/RDML/man/sampleTypeType.Rd | 68 RDML-1.0/RDML/man/sequencesType.Rd | 54 RDML-1.0/RDML/man/setfdata-function.Rd | 32 RDML-1.0/RDML/man/setfdata-method.Rd | 106 RDML-1.0/RDML/man/stepType.Rd | 64 RDML-1.0/RDML/man/targetType.Rd | 78 RDML-1.0/RDML/man/targetTypeType.Rd | 54 RDML-1.0/RDML/man/temperatureType.Rd | 52 RDML-1.0/RDML/man/templateQuantityType.Rd | 48 RDML-1.0/RDML/man/thermalCyclingConditionsType.Rd | 66 RDML-1.0/RDML/man/xRefType.Rd | 50 81 files changed, 11110 insertions(+), 11159 deletions(-)
Title: Multiple Comparisons and Simultaneous Confidence Intervals
Description: With this package, it is possible to compute nonparametric simultaneous confidence intervals for relative contrast effects in the unbalanced one way layout. Moreover, it computes simultaneous p-values. The simultaneous confidence intervals can be computed using multivariate normal distribution, multivariate t-distribution with a Satterthwaite Approximation of the degree of freedom or using multivariate range preserving transformations with Logit or Probit as transformation function. 2 sample comparisons can be performed with the same methods described above. There is no assumption on the underlying distribution function, only that the data have to be at least ordinal numbers. See Konietschke et al. (2015) <doi:10.18637/jss.v064.i09> for details.
Author: Frank Konietschke [aut, cre], Kimihiro Noguchi [ctr], Kerstin Rubarth
Maintainer: Kerstin Rubarth <kerstin.rubarth@charite.de>
Diff between nparcomp versions 2.6 dated 2015-03-12 and 3.0 dated 2019-06-25
DESCRIPTION | 14 MD5 | 89 +-- NAMESPACE | 7 R/gao.R | 250 ++++++---- R/gao_cs.R | 490 +++++++++++--------- R/mctp.R | 413 ++++++++++++++--- R/mctp.rm.R | 713 +++++++++++++++++++---------- R/npar.t.test.R | 953 +++++++++++++++++++++------------------ R/npar.t.test.paired.r | 506 +++++++++++--------- R/nparcomp-package.R |only R/nparcomp.R | 988 ++++++++++++++++++++++------------------- R/plot.mctp.R | 112 ++++ R/plot.mctp.rm.R | 119 ++++ R/plot.nparcomp.R | 72 ++ R/plot.nparttest.R | 73 ++- R/plot.nparttestpaired.r | 79 ++- R/summary.mctp.R | 91 ++- R/summary.mctp.rm.R | 93 ++- R/summary.nparcomp.R | 116 +++- R/summary.nparttest.R | 78 ++- R/summary.nparttestpaired.r | 78 ++- man/PGI.rd | 3 man/appetite.Rd | 3 man/colu.Rd | 3 man/gao.Rd | 3 man/gao_cs.Rd | 4 man/impla.Rd | 3 man/liver.Rd | 3 man/mctp.Rd | 78 +-- man/mctp.rm.Rd | 100 ++-- man/npar.t.test.Rd | 3 man/npar.t.test.paired.rd | 3 man/nparcomp-package.Rd | 3 man/nparcomp.Rd | 3 man/panic.Rd | 3 man/plot.mctp.Rd | 2 man/plot.mctp.rm.Rd | 5 man/plot.nparcomp.Rd | 3 man/plot.nparttest.Rd | 3 man/plot.nparttestpaired.rd | 3 man/reaction.Rd | 3 man/summary.mctp.Rd | 4 man/summary.mctp.rm.Rd | 4 man/summary.nparcomp.Rd | 4 man/summary.nparttest.Rd | 4 man/summary.nparttestpaired.rd | 4 46 files changed, 3492 insertions(+), 2096 deletions(-)
Title: The Induced Smoothed Lasso
Description: An implementation of the induced smoothing (IS) idea to lasso regularization models to allow estimation and inference on the model coefficients (currently hypothesis testing only). Linear, logistic, Poisson and gamma regressions with several link functions are implemented. The algorithm is described in the original paper: Cilluffo, G., Sottile, G., La Grutta, S. and Muggeo, V. (2019) The Induced Smoothed lasso: A practical framework for hypothesis testing in high dimensional regression. <doi:10.1177/0962280219842890>, and discussed in a tutorial: Sottile, G., Cilluffo, G., and Muggeo, V. (2019) The R package islasso: estimation and hypothesis testing in lasso regression. <doi:10.13140/RG.2.2.16360.11521>.
Author: Gianluca Sottile [aut, cre],
Giovanna Cilluffo [aut, ctb],
Vito MR Muggeo [aut, cre]
Maintainer: Gianluca Sottile <gianluca.sottile@unipa.it>
Diff between islasso versions 1.0.0 dated 2019-04-29 and 1.1.0 dated 2019-06-25
islasso-1.0.0/islasso/man/islasso.control.Rd |only islasso-1.0.0/islasso/man/optim.islasso.Rd |only islasso-1.0.0/islasso/man/simulXY.Rd |only islasso-1.1.0/islasso/DESCRIPTION | 13 islasso-1.1.0/islasso/MD5 | 55 ++- islasso-1.1.0/islasso/NAMESPACE | 12 islasso-1.1.0/islasso/NEWS |only islasso-1.1.0/islasso/R/islasso.R | 334 +++++++++++++----------- islasso-1.1.0/islasso/data/datalist | 1 islasso-1.1.0/islasso/data/diabetes.RData |only islasso-1.1.0/islasso/inst/CITATION | 52 ++- islasso-1.1.0/islasso/man/aic.islasso.Rd |only islasso-1.1.0/islasso/man/anova.islasso.Rd | 36 +- islasso-1.1.0/islasso/man/diabetes.Rd |only islasso-1.1.0/islasso/man/is.control.Rd |only islasso-1.1.0/islasso/man/islasso-internal.Rd | 50 +-- islasso-1.1.0/islasso/man/islasso-package.Rd | 13 islasso-1.1.0/islasso/man/islasso.Rd | 34 +- islasso-1.1.0/islasso/man/plot.islasso.Rd | 30 +- islasso-1.1.0/islasso/man/predict.islasso.Rd | 5 islasso-1.1.0/islasso/man/simulXy.Rd |only islasso-1.1.0/islasso/man/summary.islasso.Rd | 41 +- islasso-1.1.0/islasso/src/C_FORTRAN_interface.c | 9 islasso-1.1.0/islasso/src/Makevars | 1 islasso-1.1.0/islasso/src/auxiliary.f90 | 78 ++--- islasso-1.1.0/islasso/src/gradient.f90 | 7 islasso-1.1.0/islasso/src/hessian.f90 | 7 islasso-1.1.0/islasso/src/init.c | 14 - islasso-1.1.0/islasso/src/islasso.h | 30 +- islasso-1.1.0/islasso/src/islasso2.f90 | 108 +++++-- islasso-1.1.0/islasso/src/islasso_glm.f90 | 55 ++- islasso-1.1.0/islasso/src/link.f90 | 6 islasso-1.1.0/islasso/src/trace_islasso.c | 27 + 33 files changed, 557 insertions(+), 461 deletions(-)
Title: Multivariate Analysis with Optimal Scaling
Description: Implements categorical principal component analysis ('PRINCALS'), multiple correspondence analysis ('HOMALS'), monotone regression analysis ('MORALS'). It replaces the 'homals' package.
Author: Patrick Mair [aut, cre],
Jan De Leeuw [aut],
Patrick J. F. Groenen [ctb]
Maintainer: Patrick Mair <mair@fas.harvard.edu>
Diff between Gifi versions 0.3-8 dated 2018-10-03 and 0.3-9 dated 2019-06-25
DESCRIPTION | 12 ++++++------ MD5 | 10 +++++----- inst/NEWS.Rd | 6 ++++++ man/homals.Rd | 2 +- man/morals.Rd | 2 +- man/princals.Rd | 2 +- 6 files changed, 20 insertions(+), 14 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-07-10 0.1.0
Title: R Graphics Devices for Vector Graphics Output
Description: Vector Graphics devices for Microsoft
PowerPoint and Excel. Functions extending package 'officer' are provided to
embed 'DrawingML' graphics into 'Microsoft PowerPoint' presentations and
'Microsoft Excel' workbooks.
Author: David Gohel [aut, cre],
Bob Rudis [ctb] (the javascript code used by function set_attr),
Francois Brunetti [ctb] (clipping algorithms)
Maintainer: David Gohel <david.gohel@ardata.fr>
Diff between rvg versions 0.2.0 dated 2019-04-06 and 0.2.1 dated 2019-06-25
DESCRIPTION | 11 +-- MD5 | 14 ++- NAMESPACE | 12 ++- NEWS | 7 + R/ph_with_vg.R | 191 ++++++++++++++++++++++++++++++++++++----------------- README.md | 11 +-- man/dml.Rd |only man/ph_with.dml.Rd |only man/ph_with_vg.Rd | 16 +++- 9 files changed, 181 insertions(+), 81 deletions(-)
Title: Functions for Tabular Reporting
Description: Create pretty tables for 'HTML', 'Microsoft Word' and 'Microsoft PowerPoint' documents.
Functions are provided to let users create tables, modify and format their content.
It extends package 'officer' that does not contain any feature for customized tabular reporting
and can be used within R markdown documents.
Author: David Gohel [aut, cre],
Quentin Fazilleau [ctb],
Maxim Nazarov [ctb] (rmarkdown for docx output),
Titouan Robert [ctb]
Maintainer: David Gohel <david.gohel@ardata.fr>
Diff between flextable versions 0.5.4 dated 2019-05-14 and 0.5.5 dated 2019-06-25
DESCRIPTION | 6 - MD5 | 107 +++++++++++++++++--------------- NAMESPACE | 10 +++ NEWS | 16 ++++ R/01_fpstruct.R | 62 ++++++++++++------ R/05_content.R | 139 ++++++++++++++++++++++++++++++++++++++++++ R/display.R | 1 R/flextable.R | 2 R/flextable_sizes.R | 40 +++++++++++- R/merge_flextable.R | 55 +++++++++++++--- R/ph_with_flextable.R | 35 ++++++++++ R/printers.R | 83 ++++++++++++++++++++----- R/set_headers.R | 16 ++++ R/tabpart_tools.R | 44 +++++++------ R/utils.R | 19 +++++ inst/doc/display.R | 13 +++ inst/doc/display.Rmd | 23 ++++++ inst/doc/display.html | 59 +++++++++++++---- inst/doc/format.html | 7 ++ inst/doc/layout.html | 11 ++- inst/doc/overview.R | 2 inst/doc/overview.Rmd | 4 - inst/doc/overview.html | 15 +++- inst/doc/selectors.html | 7 ++ inst/web_1.0.0/tabwid.css | 7 ++ man/as_b.Rd |only man/as_bracket.Rd |only man/as_chunk.Rd | 8 +- man/as_i.Rd |only man/as_image.Rd | 8 +- man/as_raster.Rd | 3 man/as_sub.Rd |only man/as_sup.Rd |only man/autofit.Rd | 5 - man/dim.flextable.Rd | 5 - man/dim_pretty.Rd | 5 - man/docx_value.Rd |only man/fit_to_width.Rd |only man/flextable_dim.Rd | 3 man/format.flextable.Rd | 2 man/height.Rd | 3 man/htmltools_value.Rd | 9 +- man/hyperlink_text.Rd | 8 +- man/knit_print.flextable.Rd | 16 +++- man/linerange.Rd | 8 +- man/merge_h.Rd | 3 man/merge_v.Rd | 34 +++++++++- man/minibar.Rd | 8 +- man/ph_with.flextable.Rd |only man/ph_with_flextable.Rd | 3 man/plot.flextable.Rd | 2 man/print.flextable.Rd | 2 man/save_as_html.Rd | 2 man/save_as_image.Rd | 2 man/set_caption.Rd | 2 man/width.Rd | 3 tests/testthat/test-footers.R |only vignettes/display.Rmd | 23 ++++++ vignettes/overview.Rmd | 4 - 59 files changed, 764 insertions(+), 190 deletions(-)
Title: Validate 'JSON'
Description: Uses the node library 'is-my-json-valid' or 'ajv' to
validate 'JSON' against a 'JSON' schema. Drafts 04, 06 and 07 of
'JSON' schema are supported.
Author: Rich FitzJohn [aut, cre],
Ian Lyttle [ctb],
Kara Woo [ctb],
Mathias Buus [cph],
Evgeny Poberezkin [cph]
Maintainer: Rich FitzJohn <rich.fitzjohn@gmail.com>
Diff between jsonvalidate versions 1.0.0 dated 2016-06-13 and 1.1.0 dated 2019-06-25
jsonvalidate-1.0.0/jsonvalidate/inst/is-my-json-valid.js |only jsonvalidate-1.0.0/jsonvalidate/inst/web |only jsonvalidate-1.0.0/jsonvalidate/vignettes/src |only jsonvalidate-1.1.0/jsonvalidate/DESCRIPTION | 28 jsonvalidate-1.1.0/jsonvalidate/MD5 | 42 jsonvalidate-1.1.0/jsonvalidate/NEWS.md |only jsonvalidate-1.1.0/jsonvalidate/R/validate.R | 135 ++ jsonvalidate-1.1.0/jsonvalidate/README.md | 9 jsonvalidate-1.1.0/jsonvalidate/build/vignette.rds |binary jsonvalidate-1.1.0/jsonvalidate/inst/LICENSE.ajv |only jsonvalidate-1.1.0/jsonvalidate/inst/LICENSE.is-my-json-valid | 2 jsonvalidate-1.1.0/jsonvalidate/inst/bundle.js |only jsonvalidate-1.1.0/jsonvalidate/inst/doc/jsonvalidate.Rmd | 8 jsonvalidate-1.1.0/jsonvalidate/inst/doc/jsonvalidate.html | 523 +++++++--- jsonvalidate-1.1.0/jsonvalidate/man/json_validate.Rd | 50 jsonvalidate-1.1.0/jsonvalidate/man/json_validator.Rd | 73 + jsonvalidate-1.1.0/jsonvalidate/tests/testthat/schema2.json |only jsonvalidate-1.1.0/jsonvalidate/tests/testthat/test-validator.R | 86 + jsonvalidate-1.1.0/jsonvalidate/vignettes/jsonvalidate.Rmd | 8 19 files changed, 758 insertions(+), 206 deletions(-)
Title: Functions for Base Types and Core R and 'Tidyverse' Features
Description: A toolbox for working with base types, core R features
like the condition system, and core 'Tidyverse' features like tidy
evaluation.
Author: Lionel Henry [aut, cre],
Hadley Wickham [aut],
RStudio [cph]
Maintainer: Lionel Henry <lionel@rstudio.com>
Diff between rlang versions 0.3.4 dated 2019-04-07 and 0.4.0 dated 2019-06-25
rlang-0.3.4/rlang/R/exec.R |only rlang-0.3.4/rlang/R/vec-bytes.R |only rlang-0.3.4/rlang/R/vec-chr.R |only rlang-0.3.4/rlang/R/vec-coerce.R |only rlang-0.3.4/rlang/R/vec-utils.R |only rlang-0.3.4/rlang/man/UQE.Rd |only rlang-0.3.4/rlang/man/dictionary.Rd |only rlang-0.3.4/rlang/man/eval_tidy_.Rd |only rlang-0.3.4/rlang/man/is_quosureish.Rd |only rlang-0.3.4/rlang/man/modify.Rd |only rlang-0.3.4/rlang/man/mut_utf8_locale.Rd |only rlang-0.3.4/rlang/man/set_chr_encoding.Rd |only rlang-0.3.4/rlang/man/switch_lang.Rd |only rlang-0.3.4/rlang/tests/testthat/test-eval.R |only rlang-0.3.4/rlang/tests/testthat/test-vec-coerce.R |only rlang-0.4.0/rlang/DESCRIPTION | 8 rlang-0.4.0/rlang/MD5 | 377 +-- rlang-0.4.0/rlang/NAMESPACE | 34 rlang-0.4.0/rlang/NEWS.md | 178 + rlang-0.4.0/rlang/R/arg.R | 24 rlang-0.4.0/rlang/R/attr.R | 23 rlang-0.4.0/rlang/R/call.R | 105 - rlang-0.4.0/rlang/R/cnd-handlers.R | 116 - rlang-0.4.0/rlang/R/cnd-restarts.R | 3 rlang-0.4.0/rlang/R/cnd.R | 184 - rlang-0.4.0/rlang/R/compat-lifecycle.R | 28 rlang-0.4.0/rlang/R/compat-purrr.R | 7 rlang-0.4.0/rlang/R/compat-register.R |only rlang-0.4.0/rlang/R/dots.R | 25 rlang-0.4.0/rlang/R/env-binding.R | 20 rlang-0.4.0/rlang/R/env-special.R | 61 rlang-0.4.0/rlang/R/env.R | 88 rlang-0.4.0/rlang/R/eval-tidy.R | 84 rlang-0.4.0/rlang/R/eval.R | 55 rlang-0.4.0/rlang/R/expr.R | 49 rlang-0.4.0/rlang/R/fn.R | 185 - rlang-0.4.0/rlang/R/lifecycle-retired.R | 982 +++++++--- rlang-0.4.0/rlang/R/lifecycle.R | 194 - rlang-0.4.0/rlang/R/node.R | 4 rlang-0.4.0/rlang/R/quasiquotation.R | 35 rlang-0.4.0/rlang/R/quo.R | 49 rlang-0.4.0/rlang/R/quotation.R | 12 rlang-0.4.0/rlang/R/rlang.R | 3 rlang-0.4.0/rlang/R/sexp.R | 13 rlang-0.4.0/rlang/R/stack.R | 4 rlang-0.4.0/rlang/R/state.R | 11 rlang-0.4.0/rlang/R/sym.R | 22 rlang-0.4.0/rlang/R/trace.R | 9 rlang-0.4.0/rlang/R/types.R | 347 --- rlang-0.4.0/rlang/R/utils-conditions.R |only rlang-0.4.0/rlang/R/utils-encoding.R |only rlang-0.4.0/rlang/R/vec-na.R | 29 rlang-0.4.0/rlang/R/vec-new.R | 24 rlang-0.4.0/rlang/R/vec.R | 56 rlang-0.4.0/rlang/R/weakref.R |only rlang-0.4.0/rlang/README.md | 4 rlang-0.4.0/rlang/build/rlang.pdf |binary rlang-0.4.0/rlang/man/abort.Rd | 4 rlang-0.4.0/rlang/man/are_na.Rd | 9 rlang-0.4.0/rlang/man/as_bytes.Rd | 2 rlang-0.4.0/rlang/man/as_data_mask.Rd | 28 rlang-0.4.0/rlang/man/as_env.Rd | 6 rlang-0.4.0/rlang/man/as_environment.Rd | 6 rlang-0.4.0/rlang/man/as_function.Rd | 22 rlang-0.4.0/rlang/man/as_overscope.Rd | 18 rlang-0.4.0/rlang/man/as_utf8_character.Rd | 30 rlang-0.4.0/rlang/man/bare-type-predicates.Rd | 3 rlang-0.4.0/rlang/man/call2.Rd | 5 rlang-0.4.0/rlang/man/call_args.Rd | 5 rlang-0.4.0/rlang/man/call_fn.Rd | 2 rlang-0.4.0/rlang/man/call_modify.Rd | 9 rlang-0.4.0/rlang/man/call_name.Rd | 6 rlang-0.4.0/rlang/man/call_standardise.Rd | 6 rlang-0.4.0/rlang/man/caller_frame.Rd | 2 rlang-0.4.0/rlang/man/chr_unserialise_unicode.Rd | 4 rlang-0.4.0/rlang/man/cnd.Rd | 2 rlang-0.4.0/rlang/man/cnd_signal.Rd | 103 - 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rlang-0.4.0/rlang/src/internal/expr-interp.h | 9 rlang-0.4.0/rlang/src/internal/fn.c |only rlang-0.4.0/rlang/src/internal/internal.c | 17 rlang-0.4.0/rlang/src/internal/internal.h | 27 rlang-0.4.0/rlang/src/internal/quo.c | 3 rlang-0.4.0/rlang/src/internal/utils.h | 1 rlang-0.4.0/rlang/src/lib.c | 1 rlang-0.4.0/rlang/src/lib/cnd.c | 4 rlang-0.4.0/rlang/src/lib/formula.c | 4 rlang-0.4.0/rlang/src/lib/lang.h | 23 rlang-0.4.0/rlang/src/lib/node.c | 18 rlang-0.4.0/rlang/src/lib/node.h | 31 rlang-0.4.0/rlang/src/lib/rlang.c | 2 rlang-0.4.0/rlang/src/lib/sexp.c | 2 rlang-0.4.0/rlang/src/lib/sexp.h | 2 rlang-0.4.0/rlang/src/lib/squash.c | 51 rlang-0.4.0/rlang/src/lib/squash.h | 2 rlang-0.4.0/rlang/src/lib/stack.c | 4 rlang-0.4.0/rlang/src/lib/sym.h | 2 rlang-0.4.0/rlang/src/lib/vec-chr.h | 19 rlang-0.4.0/rlang/src/lib/vec.h | 4 rlang-0.4.0/rlang/src/lib/weakref.c |only rlang-0.4.0/rlang/tests/testthat/helper-c-api.R | 20 rlang-0.4.0/rlang/tests/testthat/helper-capture.R | 4 rlang-0.4.0/rlang/tests/testthat/helper-cnd.R | 8 rlang-0.4.0/rlang/tests/testthat/helper-locale.R | 43 rlang-0.4.0/rlang/tests/testthat/helper-rlang.R | 5 rlang-0.4.0/rlang/tests/testthat/test-arg.R | 2 rlang-0.4.0/rlang/tests/testthat/test-attr.R | 8 rlang-0.4.0/rlang/tests/testthat/test-c-api.R | 69 rlang-0.4.0/rlang/tests/testthat/test-call.R | 12 rlang-0.4.0/rlang/tests/testthat/test-cnd-error-str.txt | 4 rlang-0.4.0/rlang/tests/testthat/test-cnd.R | 57 rlang-0.4.0/rlang/tests/testthat/test-deparse.R | 4 rlang-0.4.0/rlang/tests/testthat/test-dots.R | 18 rlang-0.4.0/rlang/tests/testthat/test-encoding.R | 9 rlang-0.4.0/rlang/tests/testthat/test-env-special.R | 50 rlang-0.4.0/rlang/tests/testthat/test-eval-tidy.R | 71 rlang-0.4.0/rlang/tests/testthat/test-fn.R | 19 rlang-0.4.0/rlang/tests/testthat/test-lifecycle.R | 24 rlang-0.4.0/rlang/tests/testthat/test-node.R | 31 rlang-0.4.0/rlang/tests/testthat/test-on-error-message-options.txt | 2 rlang-0.4.0/rlang/tests/testthat/test-parse.R | 4 rlang-0.4.0/rlang/tests/testthat/test-quasiquotation.R | 49 rlang-0.4.0/rlang/tests/testthat/test-quo.R | 10 rlang-0.4.0/rlang/tests/testthat/test-quotation.R | 3 rlang-0.4.0/rlang/tests/testthat/test-retired.R | 134 + rlang-0.4.0/rlang/tests/testthat/test-s3.R | 6 rlang-0.4.0/rlang/tests/testthat/test-state.R | 6 rlang-0.4.0/rlang/tests/testthat/test-trace-local-prefix.txt |only rlang-0.4.0/rlang/tests/testthat/test-trace.R | 12 rlang-0.4.0/rlang/tests/testthat/test-types.R | 48 rlang-0.4.0/rlang/tests/testthat/test-utils.R | 4 rlang-0.4.0/rlang/tests/testthat/test-vec-new.R | 7 rlang-0.4.0/rlang/tests/testthat/test-vec-squash.R | 4 rlang-0.4.0/rlang/tests/testthat/test-vec-utils.R | 6 rlang-0.4.0/rlang/tests/testthat/test-weakref.R |only rlang-0.4.0/rlang/tests/testthat/test-with-abort.txt | 4 204 files changed, 3809 insertions(+), 2693 deletions(-)
Title: Enhancements for 'broom' Package Family
Description: Collection of functions to assist 'broom' and
'broom.mixed' package-related data analysis workflows. In particular,
the generic functions tidy(), glance(), and augment() choose
appropriate S3 methods from these two packages depending on which
package exports the needed method. Additionally, 'grouped_' and
'boot_' variants of the generics provides a convenient way to execute
functions across a combination of grouping variable(s) in a dataframe
or bootstrap them.
Author: Indrajeet Patil [aut, cre, ctb]
(<https://orcid.org/0000-0003-1995-6531>)
Maintainer: Indrajeet Patil <patilindrajeet.science@gmail.com>
Diff between broomExtra versions 0.0.3 dated 2019-05-20 and 0.0.4 dated 2019-06-25
broomExtra-0.0.3/broomExtra/R/augment.R |only broomExtra-0.0.3/broomExtra/R/glance.R |only broomExtra-0.0.3/broomExtra/R/grouped_augment.R |only broomExtra-0.0.3/broomExtra/R/grouped_glance.R |only broomExtra-0.0.3/broomExtra/R/grouped_tidy.R |only broomExtra-0.0.3/broomExtra/R/tidy.R |only broomExtra-0.0.3/broomExtra/R/utils-pipe.R |only broomExtra-0.0.3/broomExtra/man/pipe.Rd |only broomExtra-0.0.3/broomExtra/tests/testthat/test_augment.R |only broomExtra-0.0.3/broomExtra/tests/testthat/test_glance.R |only broomExtra-0.0.3/broomExtra/tests/testthat/test_grouped_augment.R |only broomExtra-0.0.3/broomExtra/tests/testthat/test_grouped_glance.R |only broomExtra-0.0.3/broomExtra/tests/testthat/test_grouped_tidy.R |only broomExtra-0.0.3/broomExtra/tests/testthat/test_tidy.R |only broomExtra-0.0.4/broomExtra/DESCRIPTION | 27 - broomExtra-0.0.4/broomExtra/MD5 | 68 +- broomExtra-0.0.4/broomExtra/NAMESPACE | 9 broomExtra-0.0.4/broomExtra/NEWS.md | 5 broomExtra-0.0.4/broomExtra/R/boot_generics.R |only broomExtra-0.0.4/broomExtra/R/generics.R |only broomExtra-0.0.4/broomExtra/R/global_vars.R | 6 broomExtra-0.0.4/broomExtra/R/grouped_generics.R |only broomExtra-0.0.4/broomExtra/R/reexports.R |only broomExtra-0.0.4/broomExtra/README.md | 235 ++++++++-- broomExtra-0.0.4/broomExtra/build/broomExtra.pdf |binary broomExtra-0.0.4/broomExtra/inst/doc/available_methods.R | 2 broomExtra-0.0.4/broomExtra/inst/doc/available_methods.Rmd | 4 broomExtra-0.0.4/broomExtra/inst/doc/available_methods.html | 126 +++-- broomExtra-0.0.4/broomExtra/inst/doc/tests_and_coverage.Rmd | 69 +- broomExtra-0.0.4/broomExtra/inst/doc/tests_and_coverage.html | 153 ++---- broomExtra-0.0.4/broomExtra/man/augment.Rd | 2 broomExtra-0.0.4/broomExtra/man/boot_augment.Rd |only broomExtra-0.0.4/broomExtra/man/boot_glance.Rd |only broomExtra-0.0.4/broomExtra/man/boot_tidy.Rd |only broomExtra-0.0.4/broomExtra/man/figures |only broomExtra-0.0.4/broomExtra/man/glance.Rd | 2 broomExtra-0.0.4/broomExtra/man/grouped_augment.Rd | 5 broomExtra-0.0.4/broomExtra/man/grouped_glance.Rd | 2 broomExtra-0.0.4/broomExtra/man/grouped_tidy.Rd | 2 broomExtra-0.0.4/broomExtra/man/reexports.Rd |only broomExtra-0.0.4/broomExtra/man/tidy.Rd | 6 broomExtra-0.0.4/broomExtra/tests/README.md | 71 +-- broomExtra-0.0.4/broomExtra/tests/testthat/test_boot_generics.R |only broomExtra-0.0.4/broomExtra/tests/testthat/test_generics.R |only broomExtra-0.0.4/broomExtra/tests/testthat/test_grouped_generics.R |only broomExtra-0.0.4/broomExtra/vignettes/available_methods.Rmd | 4 broomExtra-0.0.4/broomExtra/vignettes/tests_and_coverage.Rmd | 69 +- 47 files changed, 533 insertions(+), 334 deletions(-)
Title: Miscellaneous Functions by 'Yihui Xie'
Description: Miscellaneous functions commonly used in other packages maintained by 'Yihui Xie'.
Author: Yihui Xie [aut, cre, cph] (<https://orcid.org/0000-0003-0645-5666>),
Daijiang Li [ctb],
Xianying Tan [ctb]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between xfun versions 0.7 dated 2019-05-14 and 0.8 dated 2019-06-25
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- NEWS.md | 6 ++++++ R/command.R | 3 ++- R/io.R | 1 + R/packages.R | 2 +- R/revcheck.R | 6 +++--- inst/doc/xfun.html | 25 +++++++++++++++++++++---- 8 files changed, 45 insertions(+), 20 deletions(-)
Title: Helper Functions to Install and Maintain 'TeX Live', and Compile
'LaTeX' Documents
Description: Helper functions to install and maintain the 'LaTeX' distribution
named 'TinyTeX' (<https://yihui.name/tinytex/>), a lightweight, cross-platform,
portable, and easy-to-maintain version of 'TeX Live'. This package also
contains helper functions to compile 'LaTeX' documents, and install missing
'LaTeX' packages automatically.
Author: Yihui Xie [aut, cre, cph] (<https://orcid.org/0000-0003-0645-5666>),
RStudio, Inc. [cph],
Fernando Cagua [ctb],
Ethan Heinzen [ctb]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between tinytex versions 0.13 dated 2019-05-14 and 0.14 dated 2019-06-25
DESCRIPTION | 10 ++++++---- MD5 | 6 +++--- R/latex.R | 15 ++++++++++++++- R/tlmgr.R | 7 ++++++- 4 files changed, 29 insertions(+), 9 deletions(-)
Title: Quick Serialization of R Objects
Description: Provides functions for quickly writing and reading any R object to and from disk.
Author: Travers Ching [aut, cre, cph],
Yann Collet [ctb, cph] (Yann Collet is the author of the bundled zstd
and lz4 code),
Facebook, Inc. [cph] (Facebook is the copyright holder of the bundled
zstd code),
Reichardt Tino [ctb, cph] (Contributor/copyright holder of zstd bundled
code),
Skibinski Przemyslaw [ctb, cph] (Contributor/copyright holder of zstd
bundled code),
Mori Yuta [ctb, cph] (Contributor/copyright holder of zstd bundled
code),
Romain Francois [ctb, cph] (Derived example/tutorials for Alt-Rep
structures),
Francesc Alted [ctb, cph] (Shuffling routines derived from Blosc
library)
Maintainer: Travers Ching <traversc@gmail.com>
Diff between qs versions 0.16.1 dated 2019-05-17 and 0.17.1 dated 2019-06-25
qs-0.16.1/qs/man/qinspect.Rd |only qs-0.17.1/qs/ChangeLog | 23 qs-0.17.1/qs/DESCRIPTION | 8 qs-0.17.1/qs/MD5 | 51 - qs-0.17.1/qs/NAMESPACE | 4 qs-0.17.1/qs/R/RcppExports.R | 12 qs-0.17.1/qs/R/help_files.R | 39 - qs-0.17.1/qs/README.md | 14 qs-0.17.1/qs/build/vignette.rds |binary qs-0.17.1/qs/data/starnames.rda |binary qs-0.17.1/qs/inst/doc/vignette.R | 8 qs-0.17.1/qs/inst/doc/vignette.html | 22 qs-0.17.1/qs/inst/doc/vignette.rmd | 11 qs-0.17.1/qs/man/qread.Rd | 6 qs-0.17.1/qs/man/qsave.Rd | 11 qs-0.17.1/qs/src/RcppExports.cpp | 31 qs-0.17.1/qs/src/qs_common.h | 947 +++++++++++++++++++++++++-- qs-0.17.1/qs/src/qs_deserialization.h | 283 -------- qs-0.17.1/qs/src/qs_deserialization_stream.h | 411 +---------- qs-0.17.1/qs/src/qs_functions.cpp | 307 ++++++-- qs-0.17.1/qs/src/qs_inspect.h | 2 qs-0.17.1/qs/src/qs_mt_deserialization.h | 433 ++---------- qs-0.17.1/qs/src/qs_mt_serialization.h | 274 +------ qs-0.17.1/qs/src/qs_serialization.h | 274 +------ qs-0.17.1/qs/src/qs_serialization_stream.h | 277 +------ qs-0.17.1/qs/src/xxhash |only qs-0.17.1/qs/vignettes/vignette.rmd | 11 27 files changed, 1578 insertions(+), 1881 deletions(-)
Title: Perceptual Analysis, Visualization and Organization of Spectral
Colour Data in R
Description: A cohesive framework for parsing, analyzing and organizing colour
from spectral data.
Author: Rafael Maia [aut, cre] (<https://orcid.org/0000-0002-7563-9795>),
Thomas White [aut] (<https://orcid.org/0000-0002-3976-1734>),
Hugo Gruson [aut] (<https://orcid.org/0000-0002-4094-1476>),
John Endler [aut],
Chad Eliason [aut],
Pierre-Paul Bitton [aut] (<https://orcid.org/0000-0001-5984-2331>)
Maintainer: Rafael Maia <rm72@zips.uakron.edu>
Diff between pavo versions 2.1.0 dated 2019-03-06 and 2.2.0 dated 2019-06-25
pavo-2.1.0/pavo/R/colspace.r |only pavo-2.1.0/pavo/inst/doc/analysing.R |only pavo-2.1.0/pavo/inst/doc/analysing.Rmd |only pavo-2.1.0/pavo/inst/doc/analysing.html |only pavo-2.1.0/pavo/inst/doc/importing_processing.R |only pavo-2.1.0/pavo/inst/doc/importing_processing.Rmd |only pavo-2.1.0/pavo/inst/doc/importing_processing.html |only pavo-2.1.0/pavo/inst/doc/overview.R |only pavo-2.1.0/pavo/inst/doc/overview.Rmd |only pavo-2.1.0/pavo/inst/doc/overview.html |only pavo-2.1.0/pavo/inst/doc/spectraldesc.Rmd |only pavo-2.1.0/pavo/inst/doc/spectraldesc.html |only pavo-2.1.0/pavo/tests/spelling.R |only pavo-2.1.0/pavo/vignettes/analysing.Rmd |only pavo-2.1.0/pavo/vignettes/importing_processing.Rmd |only pavo-2.1.0/pavo/vignettes/overview.Rmd |only pavo-2.1.0/pavo/vignettes/spectraldesc.Rmd |only pavo-2.2.0/pavo/DESCRIPTION | 21 pavo-2.2.0/pavo/MD5 | 326 +++++++------- pavo-2.2.0/pavo/NAMESPACE | 13 pavo-2.2.0/pavo/NEWS.md | 21 pavo-2.2.0/pavo/R/adjacent.R | 128 ++--- pavo-2.2.0/pavo/R/aggplot.R | 25 - pavo-2.2.0/pavo/R/aggspec.R | 37 - pavo-2.2.0/pavo/R/as.rimg.R | 102 ++-- pavo-2.2.0/pavo/R/as.rspec.R | 28 - pavo-2.2.0/pavo/R/axistetra.R | 12 pavo-2.2.0/pavo/R/bootcoldist.R | 19 pavo-2.2.0/pavo/R/categorical.R | 12 pavo-2.2.0/pavo/R/catplot.R | 8 pavo-2.2.0/pavo/R/cie.R | 25 - pavo-2.2.0/pavo/R/cieplot.R | 26 - pavo-2.2.0/pavo/R/classify.R | 193 ++++---- pavo-2.2.0/pavo/R/coc.R | 12 pavo-2.2.0/pavo/R/cocplot.R | 4 pavo-2.2.0/pavo/R/coldist.R | 263 +++++------ pavo-2.2.0/pavo/R/coldist2mat.R | 4 pavo-2.2.0/pavo/R/colspace.R |only pavo-2.2.0/pavo/R/data-flowers.R | 1 pavo-2.2.0/pavo/R/data-sicalis.R | 3 pavo-2.2.0/pavo/R/data-teal.R | 3 pavo-2.2.0/pavo/R/diplot.R | 5 pavo-2.2.0/pavo/R/dispace.R | 10 pavo-2.2.0/pavo/R/explorespec.R | 14 pavo-2.2.0/pavo/R/getimg.R | 95 ---- pavo-2.2.0/pavo/R/getspec.R | 26 - pavo-2.2.0/pavo/R/hexagon.R | 18 pavo-2.2.0/pavo/R/hexplot.R | 20 pavo-2.2.0/pavo/R/internal.R | 4 pavo-2.2.0/pavo/R/irrad2flux.R | 12 pavo-2.2.0/pavo/R/is.colspace.R | 4 pavo-2.2.0/pavo/R/is.vismodel.R | 4 pavo-2.2.0/pavo/R/jnd2xyz.R | 28 - pavo-2.2.0/pavo/R/jndplot.R | 47 -- pavo-2.2.0/pavo/R/jndrot.R | 6 pavo-2.2.0/pavo/R/legendtetra.R | 10 pavo-2.2.0/pavo/R/merge.rspec.R | 14 pavo-2.2.0/pavo/R/parse_avantes.R | 4 pavo-2.2.0/pavo/R/parse_procspec.R | 4 pavo-2.2.0/pavo/R/peakshape.R | 23 pavo-2.2.0/pavo/R/plot.colspace.R | 47 -- pavo-2.2.0/pavo/R/plot.rimg.R | 28 + pavo-2.2.0/pavo/R/plot.rspec.R | 28 - pavo-2.2.0/pavo/R/plotsmooth.R | 21 pavo-2.2.0/pavo/R/points.colspace.R | 6 pavo-2.2.0/pavo/R/procimg.R | 72 +-- pavo-2.2.0/pavo/R/procspec.R | 57 +- pavo-2.2.0/pavo/R/projplot.R | 6 pavo-2.2.0/pavo/R/projpoints.R | 4 pavo-2.2.0/pavo/R/segplot.R | 8 pavo-2.2.0/pavo/R/segspace.R | 10 pavo-2.2.0/pavo/R/sensdata.R | 94 +--- pavo-2.2.0/pavo/R/sensmodel.R | 16 pavo-2.2.0/pavo/R/spec2rgb.R | 6 pavo-2.2.0/pavo/R/subset.rspec.R | 14 pavo-2.2.0/pavo/R/summary.colspace.R | 32 - pavo-2.2.0/pavo/R/summary.rimg.R | 18 pavo-2.2.0/pavo/R/summary.rspec.R | 12 pavo-2.2.0/pavo/R/summary.vismodel.R | 6 pavo-2.2.0/pavo/R/tcspace.R | 22 pavo-2.2.0/pavo/R/tcsplot.R | 33 - pavo-2.2.0/pavo/R/tcspoints.R | 4 pavo-2.2.0/pavo/R/tcsvol.R | 8 pavo-2.2.0/pavo/R/tetraplot.R | 30 - pavo-2.2.0/pavo/R/triplot.R | 19 pavo-2.2.0/pavo/R/trispace.R | 16 pavo-2.2.0/pavo/R/vismodel.R | 130 ++--- pavo-2.2.0/pavo/R/vol.R | 16 pavo-2.2.0/pavo/R/voloverlap.R | 63 +- pavo-2.2.0/pavo/README.md | 28 - pavo-2.2.0/pavo/build/partial.rdb |binary pavo-2.2.0/pavo/build/vignette.rds |binary pavo-2.2.0/pavo/inst/WORDLIST | 11 pavo-2.2.0/pavo/inst/doc/pavo-1-overview.R |only pavo-2.2.0/pavo/inst/doc/pavo-1-overview.Rmd |only pavo-2.2.0/pavo/inst/doc/pavo-1-overview.html |only pavo-2.2.0/pavo/inst/doc/pavo-2-importing_processing.R |only pavo-2.2.0/pavo/inst/doc/pavo-2-importing_processing.Rmd |only pavo-2.2.0/pavo/inst/doc/pavo-2-importing_processing.html |only pavo-2.2.0/pavo/inst/doc/pavo-3-analysing.R |only pavo-2.2.0/pavo/inst/doc/pavo-3-analysing.Rmd |only pavo-2.2.0/pavo/inst/doc/pavo-3-analysing.html |only pavo-2.2.0/pavo/inst/doc/pavo-4-spectraldesc.Rmd |only pavo-2.2.0/pavo/inst/doc/pavo-4-spectraldesc.html |only pavo-2.2.0/pavo/inst/testdata/subdir |only pavo-2.2.0/pavo/man/adjacent.Rd | 104 ++-- pavo-2.2.0/pavo/man/aggplot.Rd | 17 pavo-2.2.0/pavo/man/aggspec.Rd | 8 pavo-2.2.0/pavo/man/as.rimg.Rd | 15 pavo-2.2.0/pavo/man/as.rspec.Rd | 6 pavo-2.2.0/pavo/man/axistetra.Rd | 11 pavo-2.2.0/pavo/man/bootcoldist.Rd | 14 pavo-2.2.0/pavo/man/categorical.Rd | 20 pavo-2.2.0/pavo/man/catplot.Rd | 10 pavo-2.2.0/pavo/man/cie.Rd | 39 - pavo-2.2.0/pavo/man/cieplot.Rd | 37 - pavo-2.2.0/pavo/man/classify.Rd | 29 - pavo-2.2.0/pavo/man/coc.Rd | 23 pavo-2.2.0/pavo/man/cocplot.Rd | 13 pavo-2.2.0/pavo/man/coldist.Rd | 134 ++--- pavo-2.2.0/pavo/man/coldist2mat.Rd | 6 pavo-2.2.0/pavo/man/colspace.Rd | 65 +- pavo-2.2.0/pavo/man/diplot.Rd | 15 pavo-2.2.0/pavo/man/dispace.Rd | 21 pavo-2.2.0/pavo/man/explorespec.Rd | 8 pavo-2.2.0/pavo/man/getimg.Rd | 12 pavo-2.2.0/pavo/man/getspec.Rd | 6 pavo-2.2.0/pavo/man/hexagon.Rd | 44 - pavo-2.2.0/pavo/man/hexplot.Rd | 29 - pavo-2.2.0/pavo/man/img_conversion.Rd | 29 - pavo-2.2.0/pavo/man/irrad2flux.Rd | 4 pavo-2.2.0/pavo/man/is.colspace.Rd | 2 pavo-2.2.0/pavo/man/is.vismodel.Rd | 4 pavo-2.2.0/pavo/man/jnd2xyz.Rd | 16 pavo-2.2.0/pavo/man/jndplot.Rd | 39 - pavo-2.2.0/pavo/man/jndrot.Rd | 18 pavo-2.2.0/pavo/man/legendtetra.Rd | 14 pavo-2.2.0/pavo/man/merge.rspec.Rd | 2 pavo-2.2.0/pavo/man/parse_avantes.Rd | 4 pavo-2.2.0/pavo/man/parse_procspec.Rd | 4 pavo-2.2.0/pavo/man/pavo-package.Rd | 6 pavo-2.2.0/pavo/man/peakshape.Rd | 12 pavo-2.2.0/pavo/man/plot.colspace.Rd | 57 +- pavo-2.2.0/pavo/man/plot.rimg.Rd | 2 pavo-2.2.0/pavo/man/plot.rspec.Rd | 18 pavo-2.2.0/pavo/man/plotsmooth.Rd | 8 pavo-2.2.0/pavo/man/points.colspace.Rd | 6 pavo-2.2.0/pavo/man/procimg.Rd | 11 pavo-2.2.0/pavo/man/procspec.Rd | 54 +- pavo-2.2.0/pavo/man/projplot.Rd | 16 pavo-2.2.0/pavo/man/segplot.Rd | 9 pavo-2.2.0/pavo/man/segspace.Rd | 15 pavo-2.2.0/pavo/man/sensdata.Rd | 86 +-- pavo-2.2.0/pavo/man/spec2rgb.Rd | 6 pavo-2.2.0/pavo/man/subset.rspec.Rd | 2 pavo-2.2.0/pavo/man/summary.colspace.Rd | 37 - pavo-2.2.0/pavo/man/summary.rimg.Rd | 6 pavo-2.2.0/pavo/man/summary.rspec.Rd | 2 pavo-2.2.0/pavo/man/summary.vismodel.Rd | 16 pavo-2.2.0/pavo/man/tcspace.Rd | 45 - pavo-2.2.0/pavo/man/tcsplot.Rd | 38 - pavo-2.2.0/pavo/man/tetraplot.Rd | 28 - pavo-2.2.0/pavo/man/triplot.Rd | 21 pavo-2.2.0/pavo/man/trispace.Rd | 36 - pavo-2.2.0/pavo/man/vismodel.Rd | 90 +-- pavo-2.2.0/pavo/man/vol.Rd | 12 pavo-2.2.0/pavo/man/voloverlap.Rd | 38 - pavo-2.2.0/pavo/tests/testthat/test-S3rspec.R | 1 pavo-2.2.0/pavo/tests/testthat/test-coldist.R | 50 +- pavo-2.2.0/pavo/tests/testthat/test-colspace.R | 26 - pavo-2.2.0/pavo/tests/testthat/test-general.R | 22 pavo-2.2.0/pavo/tests/testthat/test-images.R | 101 ++-- pavo-2.2.0/pavo/tests/testthat/test-import.R | 4 pavo-2.2.0/pavo/tests/testthat/test-processing.R | 9 pavo-2.2.0/pavo/tests/testthat/test-vismodel.R | 9 pavo-2.2.0/pavo/tests/testthat/test-voloverlap.R | 1 pavo-2.2.0/pavo/vignettes/pavo-1-overview.Rmd |only pavo-2.2.0/pavo/vignettes/pavo-2-importing_processing.Rmd |only pavo-2.2.0/pavo/vignettes/pavo-3-analysing.Rmd |only pavo-2.2.0/pavo/vignettes/pavo-4-spectraldesc.Rmd |only pavo-2.2.0/pavo/vignettes/refs.bib | 1 181 files changed, 2125 insertions(+), 2097 deletions(-)
Title: JAR Files of the Apache Commons Mathematics Library
Description: Java JAR files for the Apache Commons Mathematics Library for use by users and other packages.
Author: David B. Dahl [cre],
The Apache Software Foundation [aut, cph]
Maintainer: David B. Dahl <dahl@stat.byu.edu>
Diff between commonsMath versions 1.2 dated 2018-10-26 and 1.2.2 dated 2019-06-25
commonsMath-1.2.2/commonsMath/DESCRIPTION | 11 commonsMath-1.2.2/commonsMath/MD5 | 21 commonsMath-1.2.2/commonsMath/NAMESPACE | 3 commonsMath-1.2.2/commonsMath/NEWS | 7 commonsMath-1.2.2/commonsMath/build/partial.rdb |binary commonsMath-1.2.2/commonsMath/build/vignette.rds |binary commonsMath-1.2.2/commonsMath/inst/doc/commonsMath.html | 527 ++++------ commonsMath-1.2.2/commonsMath/inst/java/scala-2.11/commonsMath.jar |only commonsMath-1.2.2/commonsMath/inst/java/scala-2.12/commonsMath.jar |only commonsMath-1.2.2/commonsMath/inst/java/scala-2.13 |only commonsMath-1.2.2/commonsMath/java/commonsMath-source.jar |only commonsMath-1.2.2/commonsMath/tests/testthat/tests-transcompile.R | 6 commonsMath-1.2/commonsMath/inst/java/scala-2.11/commonsmath_2.11-1.2.jar |only commonsMath-1.2/commonsMath/inst/java/scala-2.12/commonsmath_2.12-1.2.jar |only commonsMath-1.2/commonsMath/java/commonsmath_2.12-1.2-sources.jar |only 15 files changed, 258 insertions(+), 317 deletions(-)
Title: Client for the Amazon Alexa Web Information Services API
Description: Use the Amazon Alexa Web Information Services API to
find information about domains, including the kind of content
that they carry, how popular are they---rank and traffic history,
sites linking to them, among other things. See <https://aws.amazon.com/awis/>
for more information.
Author: Gaurav Sood [aut, cre],
Thomas Leeper [ctb]
Maintainer: Gaurav Sood <gsood07@gmail.com>
Diff between aws.alexa versions 0.1.6 dated 2018-03-27 and 0.1.7 dated 2019-06-25
DESCRIPTION | 8 - MD5 | 20 +-- NAMESPACE | 4 NEWS.md | 6 R/aws.alexa.package.R | 69 +++++++++-- R/traffic_history.R | 2 build/vignette.rds |binary inst/doc/overview.html | 286 ++++++++++++++++++++++++++++++++++++++++++++--- man/alexa_GET.Rd | 12 + man/aws.alexa-package.Rd | 2 man/category_listing.Rd | 4 11 files changed, 365 insertions(+), 48 deletions(-)
Title: Download or Upload 'Socrata' Data Sets
Description: Provides easier interaction with
'Socrata' open data portals <http://dev.socrata.com>.
Users can provide a 'Socrata' data set resource URL,
or a 'Socrata' Open Data API (SoDA) web query,
or a 'Socrata' "human-friendly" URL,
returns an R data frame. Converts dates to 'POSIX'
format and manages throttling by 'Socrata'.
Users can upload data to 'Socrata' portals directly
from R.
Author: Hugh Devlin, Ph. D., Tom Schenk, Jr., Gene Leynes, Nick Lucius, John Malc, Mark Silverberg, and Peter Schmeideskamp
Maintainer: "Tom Schenk Jr." <developers@cityofchicago.org>
Diff between RSocrata versions 1.7.8-4 dated 2019-05-15 and 1.7.9-5 dated 2019-06-25
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ R/RSocrata.R | 4 ++++ README.md | 3 +-- man/read.socrata.Rd | 2 ++ man/write.socrata.Rd | 2 ++ tests/testthat/test-all.R | 26 ++++++++++++++++---------- 7 files changed, 35 insertions(+), 22 deletions(-)
Title: Access to Abbyy Optical Character Recognition (OCR) API
Description: Get text from images of text using Abbyy Cloud Optical Character
Recognition (OCR) API. Easily OCR images, barcodes, forms, documents with
machine readable zones, e.g. passports. Get the results in a variety of formats
including plain text and XML. To learn more about the Abbyy OCR API, see
<http://ocrsdk.com/>.
Author: Gaurav Sood [aut, cre]
Maintainer: Gaurav Sood <gsood07@gmail.com>
Diff between abbyyR versions 0.5.4 dated 2018-05-30 and 0.5.5 dated 2019-06-25
DESCRIPTION | 8 ++-- MD5 | 64 ++++++++++++++++---------------- NEWS.md | 6 +++ R/abbyyR.R | 4 +- R/deleteTask.R | 4 +- R/getAppInfo.R | 2 - R/getTaskStatus.R | 4 +- R/listFinishedTasks.R | 4 +- R/listTasks.R | 4 +- R/processBarcodeField.R | 4 +- R/processBusinessCard.R | 4 +- R/processCheckmarkField.R | 4 +- R/processDocument.R | 4 +- R/processFields.R | 4 +- R/processImage.R | 8 +--- R/processMRZ.R | 4 +- R/processPhotoId.R | 4 +- R/processRemoteImage.R | 4 +- R/processTextField.R | 4 +- R/submitImage.R | 4 +- build/vignette.rds |binary inst/doc/example.html | 85 +++++++++++++++++++++++++++++++++++++++---- inst/doc/overview.html | 85 +++++++++++++++++++++++++++++++++++++++---- inst/doc/wiscads.html | 85 +++++++++++++++++++++++++++++++++++++++---- man/abbyyR-package.Rd | 4 +- man/processBarcodeField.Rd | 4 +- man/processBusinessCard.Rd | 5 +- man/processCheckmarkField.Rd | 4 +- man/processDocument.Rd | 12 +++--- man/processImage.Rd | 20 ++++------ man/processPhotoId.Rd | 4 +- man/processRemoteImage.Rd | 12 +++--- man/processTextField.Rd | 4 +- 33 files changed, 357 insertions(+), 115 deletions(-)