Title: Download and Explore Datasets from UCSC Xena Data Hubs
Description: Download and explore datasets from UCSC Xena data hubs, which are
a collection of UCSC-hosted public databases such as TCGA, ICGC, TARGET, GTEx, CCLE, and others.
Databases are normalized so they can be combined, linked, filtered, explored and downloaded.
Author: Shixiang Wang [aut, cre] (<https://orcid.org/0000-0001-9855-7357>),
Martin Morgan [aut]
Maintainer: Shixiang Wang <w_shixiang@163.com>
Diff between UCSCXenaTools versions 1.2.3 dated 2019-06-21 and 1.2.4 dated 2019-07-21
UCSCXenaTools-1.2.3/UCSCXenaTools/vignettes/USCSXenaTools_files |only UCSCXenaTools-1.2.4/UCSCXenaTools/DESCRIPTION | 8 +-- UCSCXenaTools-1.2.4/UCSCXenaTools/MD5 | 21 +++------- UCSCXenaTools-1.2.4/UCSCXenaTools/NAMESPACE | 2 UCSCXenaTools-1.2.4/UCSCXenaTools/NEWS.md | 6 ++ UCSCXenaTools-1.2.4/UCSCXenaTools/R/XenaScan.R |only UCSCXenaTools-1.2.4/UCSCXenaTools/inst/doc/USCSXenaTools.html | 4 - UCSCXenaTools-1.2.4/UCSCXenaTools/man/XenaScan.Rd |only UCSCXenaTools-1.2.4/UCSCXenaTools/tests/testthat/test-basic-workflow.R | 16 +++++++ UCSCXenaTools-1.2.4/UCSCXenaTools/tests/testthat/test-full-tests.R | 3 - 10 files changed, 40 insertions(+), 20 deletions(-)
Title: Time Series Analysis Tools
Description: A system contains easy-to-use tools as a support for time series analysis courses. In particular, it incorporates a technique called Generalized Method of Wavelet Moments (GMWM) as well as its robust implementation for fast and robust parameter estimation of time series models which is described, for example, in Guerrier et al. (2013) <doi: 10.1080/01621459.2013.799920>. More details can also be found in the paper linked to via the URL below.
Author: Stéphane Guerrier [aut, cre, cph],
James Balamuta [aut, cph],
Roberto Molinari [aut, cph],
Justin Lee [aut],
Yuming Zhang [aut],
Wenchao Yang [ctb],
Nathanael Claussen [ctb],
Yunxiang Zhang [ctb],
Christian Gunning [cph],
Romain Francois [cph],
Ross Ihaka [cph],
R Core Team [cph]
Maintainer: Stéphane Guerrier <stef.guerrier@gmail.com>
Diff between simts versions 0.1.0 dated 2019-07-19 and 0.1.1 dated 2019-07-21
DESCRIPTION | 8 ++-- MD5 | 18 +++++----- NEWS.md | 8 +++- inst/doc/vignettes.html | 56 ++++++++++++++++++---------------- src/analytical_matrix_derivatives.cpp | 2 - src/dwt.cpp | 10 +++--- src/gen_process.cpp | 2 - src/guess_values.cpp | 2 - src/process_to_wv.cpp | 6 +-- src/wave_variance.cpp | 4 +- 10 files changed, 62 insertions(+), 54 deletions(-)
Title: Display and Analyze ROC Curves
Description: Tools for visualizing, smoothing and comparing receiver operating characteristic (ROC curves). (Partial) area under the curve (AUC) can be compared with statistical tests based on U-statistics or bootstrap. Confidence intervals can be computed for (p)AUC or ROC curves.
Author: Xavier Robin [cre, aut] (<https://orcid.org/0000-0002-6813-3200>),
Natacha Turck [aut],
Alexandre Hainard [aut],
Natalia Tiberti [aut],
Frédérique Lisacek [aut],
Jean-Charles Sanchez [aut],
Markus Müller [aut],
Stefan Siegert [ctb] (Fast DeLong code),
Matthias Doering [ctb] (Hand & Till Multiclass)
Maintainer: Xavier Robin <pROC-cran@xavier.robin.name>
Diff between pROC versions 1.15.0 dated 2019-06-01 and 1.15.3 dated 2019-07-21
DESCRIPTION | 10 MD5 | 24 - NEWS | 12 R/ci.coords.R | 14 R/ggroc.R | 3 R/roc.utils.R | 2 tests/figs/ggroc/ggroc-list-extra-aes-screenshot.svg | 114 ++++---- tests/figs/ggroc/ggroc-list-group-facet-screenshot.svg | 240 ++++++++--------- tests/figs/ggroc/ggroc-list-multi-aes.svg | 114 ++++---- tests/figs/ggroc/ggroc-list-screenshot.svg | 114 ++++---- tests/figs/ggroc/ggroc-screenshot.svg | 88 +++--- tests/testthat/test-ci.coords.R | 5 tests/testthat/test-coords.R | 12 13 files changed, 395 insertions(+), 357 deletions(-)
Title: Bridge Sampling for Marginal Likelihoods and Bayes Factors
Description: Provides functions for estimating marginal likelihoods, Bayes
factors, posterior model probabilities, and normalizing constants in general,
via different versions of bridge sampling (Meng & Wong, 1996,
<http://www3.stat.sinica.edu.tw/statistica/j6n4/j6n43/j6n43.htm>).
Author: Quentin F. Gronau [aut, cre] (<https://orcid.org/0000-0001-5510-6943>),
Henrik Singmann [aut] (<https://orcid.org/0000-0002-4842-3657>),
Jonathan J. Forster [ctb],
Eric-Jan Wagenmakers [ths],
The JASP Team [ctb],
Jiqiang Guo [ctb],
Jonah Gabry [ctb],
Ben Goodrich [ctb],
Kees Mulder [ctb],
Perry de Valpine [ctb]
Maintainer: Quentin F. Gronau <Quentin.F.Gronau@gmail.com>
Diff between bridgesampling versions 0.6-0 dated 2018-10-21 and 0.7-2 dated 2019-07-21
DESCRIPTION | 10 ++-- MD5 | 46 ++++++++++---------- NAMESPACE | 2 NEWS | 21 +++++++++ R/bridge_sampler.R | 10 ++-- R/bridge_sampler_internals.R | 15 +++++- R/bridge_sampler_normal.R | 46 +++++++++++++------- R/bridge_sampler_warp3.R | 13 +++-- build/vignette.rds |binary inst/doc/bridgesampling_example_jags.html | 33 ++++++++++++-- inst/doc/bridgesampling_example_nimble.html | 33 ++++++++++++-- inst/doc/bridgesampling_example_stan.html | 33 ++++++++++++-- inst/doc/bridgesampling_paper.pdf |binary inst/doc/bridgesampling_paper_extended.pdf |binary inst/doc/bridgesampling_stan_ttest.html | 33 ++++++++++++-- man/bridge_sampler.Rd | 13 +++-- tests/testthat/test-bf.R | 4 - tests/testthat/test-bridge_sampler.R | 8 +-- tests/testthat/test-bridge_sampler_Rcpp.R | 6 +- tests/testthat/test-bridge_sampler_Rcpp_parallel.R | 6 +- tests/testthat/test-bridge_sampler_parallel.R | 6 +- tests/testthat/test-bridge_sampler_print_method.R | 4 - tests/testthat/test-bridge_sampler_summary_method.R | 4 - tests/testthat/test-stan_bridge_sampler_bugs.R | 2 24 files changed, 250 insertions(+), 98 deletions(-)
More information about bridgesampling at CRAN
Permanent link
Title: Synthetic Microdata and Spatial MicroSimulation Modeling for ACS
Data
Description: Provides access to curated American Community Survey (ACS) base tables via a wrapper
to library(acs). Builds synthetic micro-datasets at any user-specified geographic level with
ten default attributes; and, conducts spatial microsimulation modeling (SMSM) via simulated
annealing. SMSM is conducted in parallel by default. Lastly, we provide functionality for
data-extensibility of micro-datasets.
Author: Alex Whitworth [aut, cre]
Maintainer: Alex Whitworth <whitworth.alex@gmail.com>
Diff between synthACS versions 1.5.0 dated 2019-07-14 and 1.5.1 dated 2019-07-21
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- R/a_class-methods_helpers.R | 4 ++-- inst/doc/jss_synthACS.pdf |binary tests/testthat/test-combine_smsm.R | 14 +++++++------- 5 files changed, 16 insertions(+), 16 deletions(-)
Title: Solving 1D Advection Bi-Flux Diffusion Equation
Description: This software solves an Advection Bi-Flux Diffusive Problem using the Finite Difference Method FDM. Vasconcellos, J.F.V., Marinho, G.M., Zanni, J.H., 2016, Numerical analysis of an anomalous diffusion with a bimodal flux distribution. <doi:10.1016/j.rimni.2016.05.001>. Silva, L.G., Knupp, D.C., Bevilacqua, L., Galeao, A.C.N.R., Silva Neto, A.J., 2014, Formulation and solution of an Inverse Anomalous Diffusion Problem with Stochastic Techniques. <doi:10.5902/2179460X13184>. In this version, it is possible to include a source as a function depending on space and time, that is, s(x,t).
Author: Jader Lugon Junior, Pedro Paulo Gomes Watts Rodrigues, Luiz Bevilacqua, Gisele Moraes Marinho, Diego Campos Knupp, Joao Flavio Vieira Vasconcellos and Antonio Jose da Silva Neto.
Maintainer: Jader Lugon Junior <jlugonjr@gmail.com>
Diff between AdvDif4 versions 0.4.18 dated 2018-12-15 and 0.7.18 dated 2019-07-21
AdvDif4-0.4.18/AdvDif4/inst |only AdvDif4-0.7.18/AdvDif4/DESCRIPTION | 7 AdvDif4-0.7.18/AdvDif4/MD5 | 27 --- AdvDif4-0.7.18/AdvDif4/NAMESPACE | 2 AdvDif4-0.7.18/AdvDif4/R/AdvDif4.R | 238 ++++++++++++++-------------- AdvDif4-0.7.18/AdvDif4/R/pentaSolve.R | 42 ++--- AdvDif4-0.7.18/AdvDif4/man/AdvDif4.Rd | 280 +++++++++++++++++----------------- 7 files changed, 290 insertions(+), 306 deletions(-)
Title: Permutation Tests for Time Series Data
Description: Helps you determine the analysis window to use when analyzing densely-sampled
time-series data, such as EEG data, using permutation testing (Maris & Oostenveld 2007)
<doi:10.1016/j.jneumeth.2007.03.024>. These permutation tests can help identify the timepoints
where significance of an effect begins and ends, and the results can be plotted in various
types of heatmap for reporting.
Author: Cesko C. Voeten [aut, cre]
Maintainer: Cesko C. Voeten <cvoeten@gmail.com>
Diff between permutes versions 0.1.1 dated 2019-05-18 and 1.0 dated 2019-07-21
DESCRIPTION | 12 ++-- MD5 | 22 ++++---- NAMESPACE | 14 ++--- R/permutes.R | 120 ++++++++++++++++++++++++++++++------------------- build/vignette.rds |binary inst/doc/permutes.R | 2 inst/doc/permutes.Rmd | 6 +- inst/doc/permutes.pdf |binary man/MMN.Rd | 28 +++++------ man/permu.test.Rd | 117 +++++++++++++++++++++++++---------------------- man/plot.permutes.Rd | 48 +++++++++---------- vignettes/permutes.Rmd | 6 +- 12 files changed, 205 insertions(+), 170 deletions(-)
Title: R Interface for Apache Impala
Description: 'SQL' back-end to 'dplyr' for Apache Impala, the massively
parallel processing query engine for Apache 'Hadoop'. Impala enables
low-latency 'SQL' queries on data stored in the 'Hadoop' Distributed
File System '(HDFS)', Apache 'HBase', Apache 'Kudu', Amazon Simple
Storage Service '(S3)', Microsoft Azure Data Lake Store '(ADLS)',
and Dell 'EMC' 'Isilon'. See <https://impala.apache.org> for more
information about Impala.
Author: Ian Cook [aut, cre],
Cloudera [cph]
Maintainer: Ian Cook <ian@cloudera.com>
Diff between implyr versions 0.2.4 dated 2018-05-17 and 0.3.0 dated 2019-07-21
implyr-0.2.4/implyr/tests/testthat/test-paste.R |only implyr-0.3.0/implyr/DESCRIPTION | 13 implyr-0.3.0/implyr/LICENSE | 2 implyr-0.3.0/implyr/MD5 | 53 + implyr-0.3.0/implyr/NAMESPACE | 5 implyr-0.3.0/implyr/NEWS.md | 10 implyr-0.3.0/implyr/R/db-compute.R | 2 implyr-0.3.0/implyr/R/db-impala.R | 280 +++++++--- implyr-0.3.0/implyr/R/db-jdbc.R | 2 implyr-0.3.0/implyr/R/db-odbc.R | 2 implyr-0.3.0/implyr/R/schema.R | 2 implyr-0.3.0/implyr/R/sql-escape.R | 2 implyr-0.3.0/implyr/R/src_impala.R | 38 + implyr-0.3.0/implyr/R/tbl_impala.R | 19 implyr-0.3.0/implyr/README.md | 50 - implyr-0.3.0/implyr/man/compute.Rd | 4 implyr-0.3.0/implyr/man/figures |only implyr-0.3.0/implyr/man/src_databases.Rd |only implyr-0.3.0/implyr/tests/testthat/helper-src.R | 18 implyr-0.3.0/implyr/tests/testthat/test-aggregate-functions.R |only implyr-0.3.0/implyr/tests/testthat/test-bitwise.R |only implyr-0.3.0/implyr/tests/testthat/test-cast.R |only implyr-0.3.0/implyr/tests/testthat/test-complex.R | 12 implyr-0.3.0/implyr/tests/testthat/test-compute.R | 31 - implyr-0.3.0/implyr/tests/testthat/test-conditional.R |only implyr-0.3.0/implyr/tests/testthat/test-copy_to.R | 12 implyr-0.3.0/implyr/tests/testthat/test-data.R | 30 + implyr-0.3.0/implyr/tests/testthat/test-lubridate.R |only implyr-0.3.0/implyr/tests/testthat/test-numeric-functions.R |only implyr-0.3.0/implyr/tests/testthat/test-regex.R |only implyr-0.3.0/implyr/tests/testthat/test-string-functions.R |only implyr-0.3.0/implyr/tests/testthat/test-stringr.R |only implyr-0.3.0/implyr/tests/testthat/test-unicode.R |only implyr-0.3.0/implyr/tests/testthat/test-warning.R | 33 + 34 files changed, 452 insertions(+), 168 deletions(-)
Title: A Pipeline Toolkit for Reproducible Computation at Scale
Description: A general-purpose computational engine for data analysis,
drake rebuilds intermediate data objects when their dependencies change,
and it skips work when the results are already up to date.
Not every execution starts from scratch,
there is native support for parallel and distributed computing,
and completed projects have tangible evidence
that they are reproducible.
Extensive documentation, from beginner-friendly tutorials
to practical examples and more, is available at the reference website
<https://ropensci.github.io/drake/> and the online manual
<https://ropenscilabs.github.io/drake-manual/>.
Author: William Michael Landau [aut, cre]
(<https://orcid.org/0000-0003-1878-3253>),
Alex Axthelm [ctb],
Jasper Clarkberg [ctb],
Kirill Müller [ctb],
Ben Bond-Lamberty [ctb] (<https://orcid.org/0000-0001-9525-4633>),
Tristan Mahr [ctb] (<https://orcid.org/0000-0002-8890-5116>),
Miles McBain [ctb] (<https://orcid.org/0000-0003-2865-2548>),
Ben Marwick [rev],
Peter Slaughter [rev],
Eli Lilly and Company [cph]
Maintainer: William Michael Landau <will.landau@gmail.com>
Diff between drake versions 7.4.0 dated 2019-06-07 and 7.5.2 dated 2019-07-21
drake-7.4.0/drake/R/api-plan.R |only drake-7.4.0/drake/R/preprocess-codeanalysis.R |only drake-7.4.0/drake/R/preprocess-sanitize.R |only drake-7.4.0/drake/R/utils-codeanalysis.R |only drake-7.4.0/drake/R/utils-codetools.R |only drake-7.4.0/drake/tests/scenarios/tests-separate.Rout |only drake-7.5.2/drake/DESCRIPTION | 19 drake-7.5.2/drake/MD5 | 307 +++++++------- drake-7.5.2/drake/NAMESPACE | 6 drake-7.5.2/drake/NEWS.md | 49 ++ drake-7.5.2/drake/R/analyze_code.R |only drake-7.5.2/drake/R/api-build.R | 11 drake-7.5.2/drake/R/api-cache.R | 49 -- drake-7.5.2/drake/R/api-callr.R | 8 drake-7.5.2/drake/R/api-clean.R | 2 drake-7.5.2/drake/R/api-codetoplan.R | 1 drake-7.5.2/drake/R/api-dsl.R | 80 +++ drake-7.5.2/drake/R/api-examples.R | 10 drake-7.5.2/drake/R/api-exposeimports.R | 12 drake-7.5.2/drake/R/api-history.R |only drake-7.5.2/drake/R/api-make.R | 29 - drake-7.5.2/drake/R/api-outdated.R | 106 ++++ drake-7.5.2/drake/R/api-package.R | 1 drake-7.5.2/drake/R/api-progress.R | 54 +- drake-7.5.2/drake/R/api-read.R | 4 drake-7.5.2/drake/R/api-slice.R | 2 drake-7.5.2/drake/R/api-source.R | 7 drake-7.5.2/drake/R/api-times.R | 12 drake-7.5.2/drake/R/api-usedrake.R | 6 drake-7.5.2/drake/R/backend-clustermq.R | 48 -- drake-7.5.2/drake/R/backend-future.R | 5 drake-7.5.2/drake/R/backend-loop.R | 3 drake-7.5.2/drake/R/drake_plan.R |only drake-7.5.2/drake/R/drake_plan_helpers.R |only drake-7.5.2/drake/R/drake_plan_keywords.R |only drake-7.5.2/drake/R/exec-build.R | 2 drake-7.5.2/drake/R/exec-dependencies.R | 49 +- drake-7.5.2/drake/R/exec-imports.R | 6 drake-7.5.2/drake/R/exec-memory.R | 26 - 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drake-7.5.2/drake/man/gather_by.Rd | 30 - drake-7.5.2/drake/man/gather_plan.Rd | 32 - drake-7.5.2/drake/man/get_cache.Rd | 17 drake-7.5.2/drake/man/ignore.Rd | 68 ++- drake-7.5.2/drake/man/isolate_example.Rd | 4 drake-7.5.2/drake/man/knitr_in.Rd | 33 + drake-7.5.2/drake/man/legend_nodes.Rd | 2 drake-7.5.2/drake/man/load_main_example.Rd | 12 drake-7.5.2/drake/man/load_mtcars_example.Rd | 5 drake-7.5.2/drake/man/long_hash.Rd | 3 drake-7.5.2/drake/man/make.Rd | 94 +++- drake-7.5.2/drake/man/make_imports.Rd | 3 drake-7.5.2/drake/man/make_targets.Rd | 3 drake-7.5.2/drake/man/make_with_config.Rd | 3 drake-7.5.2/drake/man/manage_memory.Rd | 3 drake-7.5.2/drake/man/map_plan.Rd | 32 - drake-7.5.2/drake/man/no_deps.Rd |only drake-7.5.2/drake/man/outdated.Rd | 14 drake-7.5.2/drake/man/parallelism_choices.Rd | 3 drake-7.5.2/drake/man/plan_analyses.Rd | 3 drake-7.5.2/drake/man/plan_summaries.Rd | 3 drake-7.5.2/drake/man/process_import.Rd | 3 drake-7.5.2/drake/man/prune_drake_graph.Rd | 3 drake-7.5.2/drake/man/r_make.Rd | 34 + drake-7.5.2/drake/man/r_recipe_wildcard.Rd | 3 drake-7.5.2/drake/man/read_drake_config.Rd | 3 drake-7.5.2/drake/man/read_drake_graph.Rd | 3 drake-7.5.2/drake/man/read_drake_plan.Rd | 3 drake-7.5.2/drake/man/read_drake_seed.Rd | 4 drake-7.5.2/drake/man/recoverable.Rd |only drake-7.5.2/drake/man/reduce_by.Rd | 32 - 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Title: R Interface to the Pushbullet Messaging Service
Description: An R interface to the Pushbullet messaging service which
provides fast and efficient notifications (and file transfer) between
computers, phones and tablets. An account has to be registered at the
site <http://www.pushbullet.com> site to obtain a (free) API key.
Author: Dirk Eddelbuettel with contributions by Bill Evans, Mike Birdgeneau,
Henrik Bengtsson, Seth Wenchel, Colin Gillespie and Chanyub Park
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RPushbullet versions 0.3.1 dated 2017-02-17 and 0.3.2 dated 2019-07-21
ChangeLog | 50 ++++++++++++++++++++++++++++++++++++++++++++++++++ DESCRIPTION | 14 +++++++------- MD5 | 15 ++++++++------- R/init.R | 4 ++-- R/pushes.R | 37 +++++++++++++++++++++++++++++++------ R/setup.R | 24 ++++++++++++++---------- README.md | 7 +++---- inst/NEWS.Rd | 13 +++++++++++++ man/pbGetPosts.Rd |only 9 files changed, 128 insertions(+), 36 deletions(-)
Title: Multinomial Logit Models
Description: Maximum Likelihood estimation of random utility discrete
choice models, as described in Kenneth Train (2009) Discrete Choice
Methods with Simulations <doi:10.1017/CBO9780511805271>.
Author: Yves Croissant [aut, cre]
Maintainer: Yves Croissant <yves.croissant@univ-reunion.fr>
Diff between mlogit versions 0.4-2 dated 2019-06-03 and 1.0-0 dated 2019-07-21
mlogit-0.4-2/mlogit/inst/doc/c8.conclusion.R |only mlogit-0.4-2/mlogit/inst/doc/c8.conclusion.Rmd |only mlogit-0.4-2/mlogit/inst/doc/c8.conclusion.html |only mlogit-0.4-2/mlogit/vignettes/c8.conclusion.Rmd |only mlogit-0.4-2/mlogit/vignettes/graph |only mlogit-1.0-0/mlogit/DESCRIPTION | 10 - mlogit-1.0-0/mlogit/MD5 | 99 ++++++++---------- mlogit-1.0-0/mlogit/NEWS.md | 13 ++ mlogit-1.0-0/mlogit/R/methods.R | 3 mlogit-1.0-0/mlogit/build/partial.rdb |binary mlogit-1.0-0/mlogit/build/vignette.rds |binary mlogit-1.0-0/mlogit/inst/REFERENCES.bib | 116 ++++++++++++++++++++++ mlogit-1.0-0/mlogit/inst/doc/c2.formula.data.Rmd | 2 mlogit-1.0-0/mlogit/inst/doc/c2.formula.data.html | 5 mlogit-1.0-0/mlogit/inst/doc/c3.rum.html | 16 +-- mlogit-1.0-0/mlogit/inst/doc/c4.relaxiid.Rmd | 4 mlogit-1.0-0/mlogit/inst/doc/c4.relaxiid.html | 4 mlogit-1.0-0/mlogit/inst/doc/c5.mxl.R | 8 + mlogit-1.0-0/mlogit/inst/doc/c5.mxl.Rmd | 26 ++++ mlogit-1.0-0/mlogit/inst/doc/c5.mxl.html | 32 ++++-- mlogit-1.0-0/mlogit/inst/doc/c6.mprobit.Rmd | 2 mlogit-1.0-0/mlogit/inst/doc/c6.mprobit.html | 3 mlogit-1.0-0/mlogit/inst/doc/c7.miscmodels.Rmd | 2 mlogit-1.0-0/mlogit/inst/doc/c7.miscmodels.html | 3 mlogit-1.0-0/mlogit/inst/doc/e1mlogit.html | 4 mlogit-1.0-0/mlogit/inst/doc/e2nlogit.html | 4 mlogit-1.0-0/mlogit/inst/doc/e3mxlogit.html | 10 - mlogit-1.0-0/mlogit/inst/doc/e4mprobit.html | 6 - mlogit-1.0-0/mlogit/inst/doc/mlogit.Rmd | 2 mlogit-1.0-0/mlogit/inst/doc/mlogit.html | 16 ++- mlogit-1.0-0/mlogit/man/Game.Rd | 21 +-- mlogit-1.0-0/mlogit/man/cor.mlogit.Rd | 1 mlogit-1.0-0/mlogit/man/distribution.Rd | 19 --- mlogit-1.0-0/mlogit/man/hmftest.Rd | 2 mlogit-1.0-0/mlogit/man/mFormula.Rd | 8 - mlogit-1.0-0/mlogit/man/miscmethods.mlogit.Rd | 21 --- mlogit-1.0-0/mlogit/man/mlogit.Rd | 9 - mlogit-1.0-0/mlogit/man/mlogit.data.Rd | 9 - mlogit-1.0-0/mlogit/man/plot.mlogit.Rd | 4 mlogit-1.0-0/mlogit/man/rpar.Rd | 2 mlogit-1.0-0/mlogit/man/scoretest.Rd | 4 mlogit-1.0-0/mlogit/man/vcov.mlogit.Rd | 11 -- mlogit-1.0-0/mlogit/tests/AER.Rout.save |only mlogit-1.0-0/mlogit/tests/Examples |only mlogit-1.0-0/mlogit/tests/greene.Rout.save |only mlogit-1.0-0/mlogit/vignettes/c2.formula.data.Rmd | 2 mlogit-1.0-0/mlogit/vignettes/c4.relaxiid.Rmd | 4 mlogit-1.0-0/mlogit/vignettes/c5.mxl.Rmd | 26 ++++ mlogit-1.0-0/mlogit/vignettes/c6.mprobit.Rmd | 2 mlogit-1.0-0/mlogit/vignettes/c7.miscmodels.Rmd | 2 mlogit-1.0-0/mlogit/vignettes/mlogit.Rmd | 2 51 files changed, 345 insertions(+), 194 deletions(-)
Title: Modelling Spatial Extremes
Description: Tools for the statistical modelling of spatial extremes using max-stable processes, copula or Bayesian hierarchical models. More precisely, this package allows (conditional) simulations from various parametric max-stable models, analysis of the extremal spatial dependence, the fitting of such processes using composite likelihoods or least square (simple max-stable processes only), model checking and selection and prediction. Other approaches (although not completely in agreement with the extreme value theory) are available such as the use of (spatial) copula and Bayesian hierarchical models assuming the so-called conditional assumptions. The latter approaches is handled through an (efficient) Gibbs sampler. Some key references: Davison et al. (2012) <doi:10.1214/11-STS376>, Padoan et al. (2010) <doi:10.1198/jasa.2009.tm08577>, Dombry et al. (2013) <doi:10.1093/biomet/ass067>.
Author: Mathieu Ribatet [aut, cre],
Richard Singleton [ctb],
R Core team [ctb]
Maintainer: Mathieu Ribatet <mathieu.ribatet@umontpellier.fr>
Diff between SpatialExtremes versions 2.0-7 dated 2018-07-02 and 2.0-7.1 dated 2019-07-21
DESCRIPTION | 6 - MD5 | 24 +++---- src/condsimMaxStab.c | 132 +++++++++++++++++++++++------------------ src/copula.c | 10 +-- src/direct.c | 4 - src/header.h | 1 src/kriging.c | 2 src/latentVariable.c | 48 +++++++++----- src/maxStableExactSimulation.c | 16 +++- src/simBrownResnick.c | 29 +++++---- src/simextremalt.c | 5 - src/simgeometric.c | 5 - src/simschlather.c | 5 - 13 files changed, 167 insertions(+), 120 deletions(-)
More information about SpatialExtremes at CRAN
Permanent link
Title: Computes Proximity in Large Sparse Matrices
Description: Computes proximity between rows or columns of large matrices efficiently in C++.
Functions are optimised for large sparse matrices using the Armadillo and Intel TBB libraries.
Among several built-in similarity/distance measures, computation of correlation,
cosine similarity and Euclidean distance is particularly fast.
Author: Kohei Watanabe [cre, aut, cph]
(<https://orcid.org/0000-0001-6519-5265>),
Robrecht Cannoodt [aut] (<https://orcid.org/0000-0003-3641-729X>)
Maintainer: Kohei Watanabe <watanabe.kohei@gmail.com>
Diff between proxyC versions 0.1.4 dated 2019-06-04 and 0.1.5 dated 2019-07-21
DESCRIPTION | 6 +++--- MD5 | 18 +++++++++--------- NEWS.md | 10 ++++++++++ R/RcppExports.R | 8 ++++---- R/proxy.R | 23 +++++++++++++---------- man/simil.Rd | 12 ++++++++---- src/RcppExports.cpp | 18 ++++++++++-------- src/linear.cpp | 12 ++++++++---- src/pair.cpp | 13 +++++++++---- tests/testthat/test-proxy.R | 10 ++++++++++ 10 files changed, 84 insertions(+), 46 deletions(-)
Title: Hierarchical Bayesian ANOVA Models
Description: It covers several Bayesian Analysis of Variance (BANOVA) models used in analysis of experimental designs in which both within- and between- subjects factors are manipulated. They can be applied to data that are common in the behavioral and social sciences. The package includes: Hierarchical Bayes ANOVA models with normal response, t response, Binomial (Bernoulli) response, Poisson response, ordered multinomial response and multinomial response variables. All models accommodate unobserved heterogeneity by including a normal distribution of the parameters across individuals. Outputs of the package include tables of sums of squares, effect sizes and p-values, and tables of predictions, which are easily interpretable for behavioral and social researchers. The floodlight analysis and mediation analysis based on these models are also provided. BANOVA uses 'Stan' and 'JAGS' as the computational platform.
Author: Chen Dong, Michel Wedel
Maintainer: Chen Dong <cdong@math.umd.edu>
Diff between BANOVA versions 1.1.2 dated 2019-01-27 and 1.1.3 dated 2019-07-21
DESCRIPTION | 11 MD5 | 260 +-- NAMESPACE | 92 - NEWS | 136 - R/BANOVA.Bern.R | 16 R/BANOVA.Bin.R | 16 R/BANOVA.Multinomial.R | 16 R/BANOVA.Normal.R | 16 R/BANOVA.Poisson.R | 16 R/BANOVA.T.R | 16 R/BANOVA.build.R | 38 R/BANOVA.floodlight.R | 104 - R/BANOVA.mediation.R | 960 ++++++------- R/BANOVA.model.R | 62 R/BANOVA.ordMultinomial.R | 16 R/BANOVA.run.R | 1113 +++++++-------- R/BAnova.R | 22 R/JAGSgen.PNormal.R | 280 +-- R/JAGSgen.bernNormal.R | 264 +-- R/JAGSgen.binNormal.R | 266 +-- R/JAGSgen.multiNormal.R | 282 +-- R/JAGSgen.normalNormal.R | 298 ++-- R/JAGSgen.ordmultiNormal.R | 358 ++--- R/cal.flood.effects.R | 1206 ++++++++-------- R/cal.mediation.effects.R | 404 ++--- R/cal.mediation.effects.individual.R | 238 +-- R/conv.diag.R | 38 R/conv.geweke.heidel.R | 82 - R/design.matrix.R | 254 +-- R/effect.matrix.factor.R | 86 - R/effect.matrix.interaction.R | 154 +- R/effect.matrix.mediator.R | 248 +-- R/est.R | 196 +- R/est.multi.R | 112 - R/floodlight.analysis.R | 468 +++--- R/get.interactions.R | 60 R/get.values.R | 52 R/multi.design.matrix.R | 608 ++++---- R/multi.effect.matrix.factor.R | 104 - R/multi.effect.matrix.interaction.R | 166 +- R/multi.predict.means.R | 244 +-- R/multi.print.table.means.R | 1788 ++++++++++++------------- R/pValues.R | 26 R/pairs.R | 32 R/predict.BANOVA.Bern.R | 12 R/predict.BANOVA.Bin.R | 12 R/predict.BANOVA.Poisson.R | 22 R/predict.BANOVA.R | 74 - R/predict.means.R | 432 +++--- R/print.BANOVA.Bern.R | 16 R/print.BANOVA.Bin.R | 16 R/print.BANOVA.R | 10 R/print.BANOVA.floodlight.R | 42 R/print.BANOVA.mediation.R | 34 R/print.BANOVA.ordMultinomial.R | 20 R/print.ancova.effect.R | 14 R/print.conv.diag.R | 28 R/print.summary.BANOVA.Bern.R | 40 R/print.summary.BANOVA.Bin.R | 40 R/print.summary.BANOVA.Multinomial.R | 40 R/print.summary.BANOVA.Normal.R | 40 R/print.summary.BANOVA.Poisson.R | 40 R/print.summary.BANOVA.R | 60 R/print.summary.BANOVA.T.R | 40 R/print.summary.BANOVA.ordMultinomial.R | 40 R/printCoefmat.R | 12 R/ssquares.R | 70 R/summary.BANOVA.Bern.R | 16 R/summary.BANOVA.Bin.R | 16 R/summary.BANOVA.Multinomial.R | 16 R/summary.BANOVA.Normal.R | 16 R/summary.BANOVA.Poisson.R | 16 R/summary.BANOVA.R | 28 R/summary.BANOVA.T.R | 16 R/summary.BANOVA.ordMultinomial.R | 16 R/table.ANCOVA.R | 622 ++++---- R/table.coefficients.R | 128 - R/table.predictions.R | 280 +-- R/table.pvalue.R | 46 R/trace.plot.R | 34 R/traceplot.R | 40 R/util.R | 108 - build/vignette.rds |binary inst/CITATION | 36 inst/doc/banova_examples.R | 772 +++++----- inst/doc/banova_examples.Rmd | 952 ++++++------- inst/doc/banova_examples.html | 1181 +++++++++------- inst/stan/Bernoulli_Normal.stan | 92 - inst/stan/Binomial_Normal.stan | 96 - inst/stan/Multinomial_Normal.stan | 84 - inst/stan/Multinomial_Normal_slow.stan | 96 - inst/stan/Normal_Normal.stan | 104 - inst/stan/Poisson_Normal.stan | 92 - inst/stan/T_Normal.stan | 114 - inst/stan/ordMultinomial_Normal.stan | 106 - inst/stan/ordMultinomial_Normal_dirichlet.stan | 102 - inst/stan/single_Bernoulli.stan | 56 inst/stan/single_Binomial.stan | 60 inst/stan/single_Multinomial.stan | 56 inst/stan/single_Normal.stan | 70 inst/stan/single_Poisson.stan | 56 inst/stan/single_T.stan | 76 - inst/stan/single_ordMultinomial.stan | 70 man/BANOVA-package.Rd | 130 - man/BANOVA.Bernoulli.Rd | 174 +- man/BANOVA.Binomial.Rd | 186 +- man/BANOVA.Multinomial.Rd | 206 +- man/BANOVA.Normal.Rd | 186 +- man/BANOVA.Poisson.Rd | 190 +- man/BANOVA.T.Rd | 174 +- man/BANOVA.floodlight.Rd | 138 - man/BANOVA.mediation.Rd | 156 +- man/BANOVA.model.Rd | 66 man/BANOVA.ordMultinomial.Rd | 198 +- man/BANOVA.run.Rd | 208 +- man/BAnova.Rd | 116 - man/bpndata.Rd | 130 - man/choicedata.Rd | 132 - man/colorad.Rd | 106 - man/colorad2.Rd | 112 - man/condstudy.Rd | 96 - man/conv.diag.Rd | 106 - man/goalstudy.Rd | 120 - man/ipadstudy.Rd | 96 - man/pairs.BANOVA.Rd | 66 man/table.predictions.Rd | 54 man/table.pvalues.Rd | 92 - man/trace.plot.Rd | 56 src/Makevars | 1 src/install.libs.R | 184 +- vignettes/banova_examples.Rmd | 952 ++++++------- 131 files changed, 11321 insertions(+), 11157 deletions(-)