Title: Stepwise Selection for Large Data Sets
Description: Selecting linear and generalized linear models for large data sets
using modified stepwise procedure and modern selection criteria (like
modifications of Bayesian Information Criterion). Selection can be
performed on data which exceed RAM capacity.
Author: Piotr Szulc [aut, cre]
Maintainer: Piotr Szulc <piotr.michal.szulc@gmail.com>
Diff between bigstep versions 1.0.2 dated 2019-07-18 and 1.0.3 dated 2019-07-25
DESCRIPTION | 8 ++++---- MD5 | 22 +++++++++++----------- R/backward.R | 9 +++++---- R/fast_forward.R | 13 ++++++++----- R/forward.R | 14 +++++++++----- R/multi_backward.R | 5 +++-- R/stepwise.R | 13 ++++++++----- inst/doc/bigstep.Rmd | 6 +++--- inst/doc/bigstep.html | 10 +++++----- tests/testthat/test_all.R | 6 +++--- tests/testthat/test_backward.R | 2 +- vignettes/bigstep.Rmd | 6 +++--- 12 files changed, 63 insertions(+), 51 deletions(-)
Title: Vehicular Emissions Inventories
Description: Elaboration of vehicular emissions inventories,
consisting in four stages, pre-processing activity data, preparing
emissions factors, estimating the emissions and post-processing of emissions
in maps and databases. More details in Ibarra-Espinosa et al (2018) <doi:10.5194/gmd-11-2209-2018>.
Before using VEIN you need to know the vehicular composition of your study area, in other words,
the combination of of type of vehicles, size and fuel of the fleet. Then, it is recommended to
start with the function inventory to create a structure of directories and template scripts.
Author: Sergio Ibarra-Espinosa [aut, cre]
(<https://orcid.org/0000-0002-3162-1905>),
Daniel Schuch [ctb] (<https://orcid.org/0000-0001-5977-4519>)
Maintainer: Sergio Ibarra-Espinosa <sergio.ibarra@usp.br>
Diff between vein versions 0.7.8 dated 2019-06-12 and 0.7.12 dated 2019-07-25
DESCRIPTION | 8 MD5 | 187 ++--- NAMESPACE | 258 +++---- NEWS.md | 1317 ++++++++++++++++++------------------- R/age.R | 179 ++--- R/age_hdv.R | 30 R/age_ldv.R | 27 R/age_moto.R | 25 R/ef_cetesb.R | 216 +++--- R/ef_china.R | 198 ++++- R/emis_grid.R | 219 +++--- R/emis_to_streets.R | 145 ++-- R/inventory.R | 602 ++++++++-------- R/my_age.R | 124 +-- R/sysdata.rda |binary inst/README.Rmd | 462 ------------ inst/README.html | 764 --------------------- man/EmissionFactors.Rd | 88 +- man/EmissionFactorsList.Rd | 96 +- man/Emissions.Rd | 134 +-- man/EmissionsArray.Rd | 136 +-- man/GriddedEmissionsArray.Rd | 168 ++-- man/Speed.Rd | 98 +- man/Vehicles.Rd | 96 +- man/add_polid.Rd | 58 - man/adt.Rd | 144 ++-- man/age.Rd | 193 +++-- man/age_hdv.Rd | 109 +-- man/age_ldv.Rd | 116 +-- man/age_moto.Rd | 111 +-- man/celsius.Rd | 52 - man/cold_mileage.Rd | 66 - man/ef_cetesb.Rd | 128 +-- man/ef_china.Rd | 282 ++++--- man/ef_evap.Rd | 194 ++--- man/ef_fun.Rd | 80 +- man/ef_hdv_scaled.Rd | 130 +-- man/ef_hdv_speed.Rd | 328 ++++----- man/ef_im.Rd | 94 +- man/ef_ive.Rd | 158 ++-- man/ef_ldv_cold.Rd | 174 ++-- man/ef_ldv_cold_list.Rd | 102 +- man/ef_ldv_scaled.Rd | 144 ++-- man/ef_ldv_speed.Rd | 490 ++++++------- man/ef_nitro.Rd | 140 +-- man/ef_wear.Rd | 84 +- man/ef_whe.Rd | 100 +- man/emis.Rd | 240 +++--- man/emis_chem.Rd | 128 +-- man/emis_cold.Rd | 196 ++--- man/emis_cold_td.Rd | 150 ++-- man/emis_det.Rd | 152 ++-- man/emis_dist.Rd | 94 +- man/emis_evap.Rd | 150 ++-- man/emis_evap2.Rd | 272 +++---- man/emis_grid.Rd | 84 +- man/emis_hot_td.Rd | 162 ++-- man/emis_merge.Rd | 102 +- man/emis_order.Rd | 114 +-- man/emis_paved.Rd | 116 +-- man/emis_post.Rd | 212 ++--- man/emis_source.Rd | 70 - man/emis_to_streets.Rd | 96 +- man/emis_wear.Rd | 112 +-- man/emis_wrf-deprecated.Rd | 68 - man/fe2015.Rd | 72 +- man/fkm.Rd | 70 - man/fuel_corr.Rd | 128 +-- man/grid_emis.Rd | 162 ++-- man/invcop.Rd | 90 +- man/inventory.Rd | 172 ++-- man/long_to_wide.Rd | 80 +- man/make_grid.Rd | 90 +- man/matvect.Rd | 74 +- man/my_age.Rd | 134 ++- man/net.Rd | 58 - man/netspeed.Rd | 138 +-- man/pc_cold.Rd | 40 - man/pc_profile.Rd | 52 - man/pollutants.Rd | 60 - man/profiles.Rd | 86 +- man/remove_units.Rd | 56 - man/running_losses-deprecated.Rd | 112 +-- man/speciate.Rd | 242 +++--- man/split_emis.Rd | 76 +- man/temp_fact.Rd | 68 - man/to_latex.Rd | 80 +- man/vein-deprecated.Rd | 240 +++--- man/vein-package.Rd | 72 +- man/vein_notes.Rd | 118 +-- man/vkm.Rd | 92 +- man/wide_to_long.Rd | 70 - tests/testthat/test-ef_china.R | 384 ++++++++++ tests/testthat/test-ef_ldv_speed.R | 23 tests/testthat/test-emis_grid.R |only 95 files changed, 7162 insertions(+), 7549 deletions(-)
Title: Tools to Handle Taxonomic Lists
Description: Some tools to work with taxonomic name lists.
Author: Vijay Barve [aut, cre] (<https://orcid.org/0000-0002-4852-2567>)
Maintainer: Vijay Barve <vijay.barve@gmail.com>
Diff between taxotools versions 0.0.30 dated 2019-06-19 and 0.0.35 dated 2019-07-25
DESCRIPTION | 8 ++++---- MD5 | 25 +++++++++++++------------ NEWS | 12 ++++++++++-- R/GetWikiSyn.R | 7 ++++--- R/cast_canonical.R | 22 ---------------------- R/list_wiki_syn.R | 5 +++-- R/make_canonical.R | 22 ---------------------- R/match_lists.R | 21 +++++++++++++++------ R/melt_canonical.R | 38 +++++++++++++++++++++++++++++++++++--- R/zzz.R |only man/GetWikiSyn.Rd | 3 ++- man/list_wiki_syn.Rd | 1 + man/match_lists.Rd | 5 +++-- man/melt_canonical.Rd | 2 +- 14 files changed, 91 insertions(+), 80 deletions(-)
Title: Data-Driven Identification of SVAR Models
Description: Implements data-driven identification methods for structural vector autoregressive (SVAR) models.
Based on an existing VAR model object (provided by e.g. VAR() from the 'vars' package), the structural
impact matrix is obtained via data-driven identification techniques (i.e. changes in volatility (Rigobon, R. (2003) <doi:10.1162/003465303772815727>), patterns of GARCH (Normadin, M., Phaneuf, L. (2004) <doi:10.1016/j.jmoneco.2003.11.002>),
independent component analysis (Matteson, D. S, Tsay, R. S., (2013) <doi:10.1080/01621459.2016.1150851>), least dependent innovations (Herwartz, H., Ploedt, M., (2016) <doi:10.1016/j.jimonfin.2015.11.001>),
smooth transition in variances (Luetkepohl, H., Netsunajev, A. (2017) <doi:10.1016/j.jedc.2017.09.001>) or non-Gaussian maximum likelihood (Lanne, M., Meitz, M., Saikkonen, P. (2017) <doi:10.1016/j.jeconom.2016.06.002>)).
Author: Alexander Lange [aut, cre],
Bernhard Dalheimer [aut],
Helmut Herwartz [aut],
Simone Maxand [aut],
Hannes Riebl [ctb]
Maintainer: Alexander Lange <alexander.lange@uni-goettingen.de>
Diff between svars versions 1.3.0 dated 2019-06-28 and 1.3.1 dated 2019-07-25
DESCRIPTION | 13 MD5 | 46 R/bootstrap_mb.R | 4 R/bootstrap_wild.R | 2 R/fevd.svars.R | 2 R/get_restriction_matrix.R | 19 R/id.cv.R | 7 R/id.cvm.R | 2 R/id.dc.R | 2 R/id.garch.R | 23 R/id.ngml.R | 4 R/id.st.R | 8 man/fevd.Rd | 2 man/id.cv.Rd | 7 man/id.cvm.Rd | 2 man/id.dc.Rd | 2 man/id.garch.Rd | 23 man/id.ngml.Rd | 4 man/id.st.Rd | 8 man/mb.boot.Rd | 4 man/wild.boot.Rd | 2 tests/testthat/test-get_restriction_matrix.R | 52 - tests/testthat/test-mb_boot.R | 1319 +++++++++++++++++++-------- tests/testthat/test-wild_boot.R | 1266 ++++++++++++++++++------- 24 files changed, 1972 insertions(+), 851 deletions(-)
Title: Spatial Accessibility Measures
Description: Provides a set of spatial accessibility measures from a set of locations
(demand) to another set of locations (supply). It aims, among others,
to support research on spatial accessibility to health care facilities.
Includes the locations and some characteristics of major public hospitals in Greece.
Author: Stamatis Kalogirou [aut, cre]
Maintainer: Stamatis Kalogirou <stamatis@lctools.science>
Diff between SpatialAcc versions 0.1-2 dated 2017-08-04 and 0.1-3 dated 2019-07-25
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- R/ac.R | 2 +- data/GR.Hospitals.RData |binary data/PWC.Municipalities.RData |binary man/ac.Rd | 2 +- 6 files changed, 11 insertions(+), 11 deletions(-)
Title: Sampling Variance Estimation
Description: Functions to calculate some point estimators and estimating their variance under unequal probability sampling without replacement. Single and two stage sampling designs are considered. Some approximations for the second order inclusion probabilities (joint inclusion probabilities) are available (sample and population based). A variety of Jackknife variance estimators are implemented. Almost every function is written in C (compiled) code for faster results. The functions incorporate some performance improvements for faster results with large datasets.
Author: Emilio Lopez Escobar [aut, cre, cph] <emilio@quantos.mx>,
Ernesto Barrios Zamudio [ctb] <ebarrios@itam.mx>,
Juan Francisco Munoz Rosas [ctb] <jfmunoz@go.ugr.es>
Maintainer: Emilio Lopez Escobar <emilio@quantos.mx>
Diff between samplingVarEst versions 1.3 dated 2018-10-02 and 1.4 dated 2019-07-25
ChangeLog | 9 +++++++++ DESCRIPTION | 16 ++++++++-------- MD5 | 8 ++++---- R/VE_Jk_EB_SW2_Ratio.r | 2 +- README | 4 ++-- 5 files changed, 24 insertions(+), 15 deletions(-)
More information about samplingVarEst at CRAN
Permanent link
Title: Stan Models for the Pairwise Comparison Factor Model
Description: Provides convenience functions and pre-programmed Stan models
related to the paired comparison factor model. Its purpose is to make fitting
paired comparison data using Stan easy.
Author: Joshua N. Pritikin [aut, cre] (<https://orcid.org/0000-0002-9862-5484>),
Daniel C. Furr [ctb],
Trustees of Columbia University [cph]
Maintainer: Joshua N. Pritikin <jpritikin@pobox.com>
Diff between pcFactorStan versions 1.0.1 dated 2019-07-23 and 1.0.2 dated 2019-07-25
DESCRIPTION | 6 MD5 | 18 R/fit.R | 2 inst/doc/manual.R | 61 -- inst/doc/manual.Rmd | 109 +--- inst/doc/manual.html | 882 +++++++++++++++++++++----------------- src/stan_files/unidim_adapt.stan | 2 tests/testthat/test-4likelihood.R | 11 tools/genStan | 2 vignettes/manual.Rmd | 109 +--- 10 files changed, 593 insertions(+), 609 deletions(-)
Title: Iterative Extrapolation of Species' Haplotype Accumulation
Curves
Description: Performs iterative extrapolation of species' haplotype accumulation curves using a nonparametric stochastic (Monte Carlo) optimization method for assessment of specimen sampling completeness based on the approach of Phillips et al. (2015) <doi:10.1515/dna-2015-0008> and Phillips et al. (2019) <doi:10.1002/ece3.4757>. Any genomic marker can be targeted to assess likely required specimen sample sizes. The method is well-suited to assess sampling sufficiency for DNA barcoding initiatives.
Author: Jarrett D. Phillips [aut, cre], Steven H. French [ctb]
Maintainer: Jarrett D. Phillips <phillipsjarrett1@gmail.com>
Diff between HACSim versions 1.0.2 dated 2019-06-28 and 1.0.3 dated 2019-07-25
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- NAMESPACE | 3 ++- R/HAC.sim.R | 48 ++++++++++++++++++++++++++++-------------------- R/zzz.R | 2 +- build/partial.rdb |binary man/HACHypothetical.Rd | 16 +++++++++++++++- man/HACReal.Rd | 17 ++++++++++++++++- 8 files changed, 73 insertions(+), 35 deletions(-)
Title: Mixed Proportional Hazard Competing Risk Model
Description: Estimation of piecewise constant mixed proportional hazard competing risk model with NPMLE.
The model is described in S. Gaure et al. (2007) <doi:10.1016/j.jeconom.2007.01.015>,
J. Heckman and B. Singer (1984) <doi:10.2307/1911491>, and
B.G. Lindsay (1983) <doi:10.1214/aos/1176346059>.
Author: Simen Gaure [aut, cre] (<https://orcid.org/0000-0001-7251-8747>)
Maintainer: Simen Gaure <simen@gaure.no>
Diff between durmod versions 1.1 dated 2019-07-15 and 1.1-1 dated 2019-07-25
DESCRIPTION | 8 +- MD5 | 32 ++++---- NAMESPACE | 1 R/RcppExports.R | 4 - R/cluster.R | 2 R/datagen.R | 10 +- R/duration.R | 36 +++++---- R/durmod-package.R | 2 R/utils.R | 27 +++---- inst/NEWS.Rd | 13 +++ inst/doc/whatmph.Rnw | 19 +++-- inst/doc/whatmph.pdf |binary man/geninv.Rd | 2 src/RcppExports.cpp | 10 +- src/cfunctions.cpp | 174 +++++++++++++++++----------------------------- tests/sometests.Rout.save | 10 +- vignettes/whatmph.Rnw | 19 +++-- 17 files changed, 182 insertions(+), 187 deletions(-)
Title: Extreme Gradient Boosting
Description: Extreme Gradient Boosting, which is an efficient implementation
of the gradient boosting framework from Chen & Guestrin (2016) <doi:10.1145/2939672.2939785>.
This package is its R interface. The package includes efficient linear
model solver and tree learning algorithms. The package can automatically
do parallel computation on a single machine which could be more than 10
times faster than existing gradient boosting packages. It supports
various objective functions, including regression, classification and ranking.
The package is made to be extensible, so that users are also allowed to define
their own objectives easily.
Author: Tianqi Chen [aut],
Tong He [aut, cre],
Michael Benesty [aut],
Vadim Khotilovich [aut],
Yuan Tang [aut] (<https://orcid.org/0000-0001-5243-233X>),
Hyunsu Cho [aut],
Kailong Chen [aut],
Rory Mitchell [aut],
Ignacio Cano [aut],
Tianyi Zhou [aut],
Mu Li [aut],
Junyuan Xie [aut],
Min Lin [aut],
Yifeng Geng [aut],
Yutian Li [aut],
XGBoost contributors [cph] (base XGBoost implementation)
Maintainer: Tong He <hetong007@gmail.com>
Diff between xgboost versions 0.82.1 dated 2019-03-11 and 0.90.0.1 dated 2019-07-25
xgboost-0.82.1/xgboost/src/dmlc-core/src/io/filesys.h |only xgboost-0.82.1/xgboost/src/rabit/include/dmlc |only xgboost-0.82.1/xgboost/src/src/metric/metric_param.h |only xgboost-0.90.0.1/xgboost/DESCRIPTION | 10 xgboost-0.90.0.1/xgboost/MD5 | 312 +- xgboost-0.90.0.1/xgboost/R/callbacks.R | 250 - xgboost-0.90.0.1/xgboost/R/utils.R | 67 xgboost-0.90.0.1/xgboost/R/xgb.Booster.R | 8 xgboost-0.90.0.1/xgboost/R/xgb.DMatrix.R | 98 xgboost-0.90.0.1/xgboost/R/xgb.DMatrix.save.R | 1 xgboost-0.90.0.1/xgboost/R/xgb.cv.R | 122 xgboost-0.90.0.1/xgboost/R/xgb.load.R | 1 xgboost-0.90.0.1/xgboost/R/xgb.plot.importance.R | 42 xgboost-0.90.0.1/xgboost/R/xgb.plot.shap.R | 34 xgboost-0.90.0.1/xgboost/R/xgb.save.R | 1 xgboost-0.90.0.1/xgboost/R/xgb.train.R | 166 - xgboost-0.90.0.1/xgboost/build/vignette.rds |binary xgboost-0.90.0.1/xgboost/cleanup | 1 xgboost-0.90.0.1/xgboost/demo/predict_leaf_indices.R | 1 xgboost-0.90.0.1/xgboost/inst/doc/discoverYourData.Rmd | 4 xgboost-0.90.0.1/xgboost/inst/doc/discoverYourData.html | 369 +- xgboost-0.90.0.1/xgboost/inst/doc/xgboost.pdf |binary xgboost-0.90.0.1/xgboost/inst/doc/xgboostPresentation.Rmd | 2 xgboost-0.90.0.1/xgboost/inst/doc/xgboostPresentation.html | 435 ++ xgboost-0.90.0.1/xgboost/inst/doc/xgboostfromJSON.R |only xgboost-0.90.0.1/xgboost/inst/doc/xgboostfromJSON.Rmd |only xgboost-0.90.0.1/xgboost/inst/doc/xgboostfromJSON.html |only xgboost-0.90.0.1/xgboost/man/callbacks.Rd | 14 xgboost-0.90.0.1/xgboost/man/cb.cv.predict.Rd | 10 xgboost-0.90.0.1/xgboost/man/cb.early.stop.Rd | 8 xgboost-0.90.0.1/xgboost/man/cb.evaluation.log.Rd | 6 xgboost-0.90.0.1/xgboost/man/cb.reset.parameters.Rd | 16 xgboost-0.90.0.1/xgboost/man/cb.save.model.Rd | 6 xgboost-0.90.0.1/xgboost/man/dim.xgb.DMatrix.Rd | 2 xgboost-0.90.0.1/xgboost/man/dimnames.xgb.DMatrix.Rd | 4 xgboost-0.90.0.1/xgboost/man/getinfo.Rd | 2 xgboost-0.90.0.1/xgboost/man/predict.xgb.Booster.Rd | 6 xgboost-0.90.0.1/xgboost/man/print.xgb.DMatrix.Rd | 2 xgboost-0.90.0.1/xgboost/man/print.xgb.cv.Rd | 2 xgboost-0.90.0.1/xgboost/man/slice.xgb.DMatrix.Rd | 4 xgboost-0.90.0.1/xgboost/man/xgb.Booster.complete.Rd | 3 xgboost-0.90.0.1/xgboost/man/xgb.DMatrix.Rd | 3 xgboost-0.90.0.1/xgboost/man/xgb.DMatrix.save.Rd | 1 xgboost-0.90.0.1/xgboost/man/xgb.attr.Rd | 1 xgboost-0.90.0.1/xgboost/man/xgb.cv.Rd | 59 xgboost-0.90.0.1/xgboost/man/xgb.gblinear.history.Rd | 2 xgboost-0.90.0.1/xgboost/man/xgb.load.Rd | 1 xgboost-0.90.0.1/xgboost/man/xgb.plot.deepness.Rd | 8 xgboost-0.90.0.1/xgboost/man/xgb.plot.importance.Rd | 18 xgboost-0.90.0.1/xgboost/man/xgb.plot.shap.Rd | 10 xgboost-0.90.0.1/xgboost/man/xgb.save.Rd | 1 xgboost-0.90.0.1/xgboost/man/xgb.train.Rd | 89 xgboost-0.90.0.1/xgboost/man/xgboost-deprecated.Rd | 4 xgboost-0.90.0.1/xgboost/src/Makevars.win-e |only xgboost-0.90.0.1/xgboost/src/dmlc-core/include/dmlc/any.h | 58 xgboost-0.90.0.1/xgboost/src/dmlc-core/include/dmlc/base.h | 11 xgboost-0.90.0.1/xgboost/src/dmlc-core/include/dmlc/build_config.h | 4 xgboost-0.90.0.1/xgboost/src/dmlc-core/include/dmlc/common.h | 6 xgboost-0.90.0.1/xgboost/src/dmlc-core/include/dmlc/concurrency.h | 1 xgboost-0.90.0.1/xgboost/src/dmlc-core/include/dmlc/data.h | 2 xgboost-0.90.0.1/xgboost/src/dmlc-core/include/dmlc/endian.h | 11 xgboost-0.90.0.1/xgboost/src/dmlc-core/include/dmlc/filesystem.h | 33 xgboost-0.90.0.1/xgboost/src/dmlc-core/include/dmlc/io.h | 115 xgboost-0.90.0.1/xgboost/src/dmlc-core/include/dmlc/json.h | 5 xgboost-0.90.0.1/xgboost/src/dmlc-core/include/dmlc/logging.h | 181 - xgboost-0.90.0.1/xgboost/src/dmlc-core/include/dmlc/memory.h | 2 xgboost-0.90.0.1/xgboost/src/dmlc-core/include/dmlc/omp.h | 3 xgboost-0.90.0.1/xgboost/src/dmlc-core/include/dmlc/optional.h | 2 xgboost-0.90.0.1/xgboost/src/dmlc-core/include/dmlc/parameter.h | 21 xgboost-0.90.0.1/xgboost/src/dmlc-core/include/dmlc/registry.h | 8 xgboost-0.90.0.1/xgboost/src/dmlc-core/include/dmlc/strtonum.h | 66 xgboost-0.90.0.1/xgboost/src/dmlc-core/include/dmlc/thread_group.h | 2 xgboost-0.90.0.1/xgboost/src/dmlc-core/include/dmlc/threadediter.h | 45 xgboost-0.90.0.1/xgboost/src/dmlc-core/include/dmlc/type_traits.h | 1 xgboost-0.90.0.1/xgboost/src/dmlc-core/src/config.cc | 8 xgboost-0.90.0.1/xgboost/src/dmlc-core/src/data/libsvm_parser.h | 25 xgboost-0.90.0.1/xgboost/src/dmlc-core/src/data/text_parser.h | 38 xgboost-0.90.0.1/xgboost/src/dmlc-core/src/io.cc | 1 xgboost-0.90.0.1/xgboost/src/dmlc-core/src/io/azure_filesys.h | 2 xgboost-0.90.0.1/xgboost/src/dmlc-core/src/io/filesys.cc | 37 xgboost-0.90.0.1/xgboost/src/dmlc-core/src/io/hdfs_filesys.h | 3 xgboost-0.90.0.1/xgboost/src/dmlc-core/src/io/input_split_base.h | 2 xgboost-0.90.0.1/xgboost/src/dmlc-core/src/io/local_filesys.h | 2 xgboost-0.90.0.1/xgboost/src/dmlc-core/src/io/s3_filesys.cc | 6 xgboost-0.90.0.1/xgboost/src/dmlc-core/src/io/s3_filesys.h | 2 xgboost-0.90.0.1/xgboost/src/dmlc-core/src/io/uri_spec.h | 1 xgboost-0.90.0.1/xgboost/src/include/xgboost/build_config.h | 4 xgboost-0.90.0.1/xgboost/src/include/xgboost/c_api.h | 38 xgboost-0.90.0.1/xgboost/src/include/xgboost/data.h | 17 xgboost-0.90.0.1/xgboost/src/include/xgboost/tree_model.h | 68 xgboost-0.90.0.1/xgboost/src/rabit/include/rabit/c_api.h | 6 xgboost-0.90.0.1/xgboost/src/rabit/include/rabit/internal/engine.h | 4 xgboost-0.90.0.1/xgboost/src/rabit/include/rabit/internal/rabit-inl.h | 8 xgboost-0.90.0.1/xgboost/src/rabit/include/rabit/internal/utils.h | 23 xgboost-0.90.0.1/xgboost/src/rabit/include/rabit/rabit.h | 6 xgboost-0.90.0.1/xgboost/src/rabit/include/rabit/serializable.h | 5 xgboost-0.90.0.1/xgboost/src/rabit/src/allreduce_base.cc | 319 +- xgboost-0.90.0.1/xgboost/src/rabit/src/allreduce_base.h | 10 xgboost-0.90.0.1/xgboost/src/rabit/src/allreduce_robust.cc | 60 xgboost-0.90.0.1/xgboost/src/rabit/src/allreduce_robust.h | 4 xgboost-0.90.0.1/xgboost/src/rabit/src/c_api.cc | 8 xgboost-0.90.0.1/xgboost/src/rabit/src/engine.cc | 34 xgboost-0.90.0.1/xgboost/src/rabit/src/engine_empty.cc | 11 xgboost-0.90.0.1/xgboost/src/rabit/src/engine_mpi.cc | 27 xgboost-0.90.0.1/xgboost/src/rabit/src/socket.h | 10 xgboost-0.90.0.1/xgboost/src/src/CMakeLists.txt |only xgboost-0.90.0.1/xgboost/src/src/c_api/c_api.cc | 40 xgboost-0.90.0.1/xgboost/src/src/cli_main.cc | 2 xgboost-0.90.0.1/xgboost/src/src/common/column_matrix.h | 23 xgboost-0.90.0.1/xgboost/src/src/common/device_helpers.cuh | 439 +- xgboost-0.90.0.1/xgboost/src/src/common/hist_util.cc | 174 - xgboost-0.90.0.1/xgboost/src/src/common/hist_util.cu | 33 xgboost-0.90.0.1/xgboost/src/src/common/hist_util.h | 69 xgboost-0.90.0.1/xgboost/src/src/common/host_device_vector.cc | 48 xgboost-0.90.0.1/xgboost/src/src/common/host_device_vector.cu | 94 xgboost-0.90.0.1/xgboost/src/src/common/host_device_vector.h | 29 xgboost-0.90.0.1/xgboost/src/src/common/math.h | 2 xgboost-0.90.0.1/xgboost/src/src/common/random.h | 62 xgboost-0.90.0.1/xgboost/src/src/common/row_set.h | 1 xgboost-0.90.0.1/xgboost/src/src/common/span.h | 4 xgboost-0.90.0.1/xgboost/src/src/common/timer.h | 52 xgboost-0.90.0.1/xgboost/src/src/common/transform.h | 44 xgboost-0.90.0.1/xgboost/src/src/data/data.cc | 10 xgboost-0.90.0.1/xgboost/src/src/data/simple_dmatrix.cc | 4 xgboost-0.90.0.1/xgboost/src/src/data/sparse_page_dmatrix.cc | 5 xgboost-0.90.0.1/xgboost/src/src/data/sparse_page_dmatrix.h | 3 xgboost-0.90.0.1/xgboost/src/src/data/sparse_page_source.cc | 14 xgboost-0.90.0.1/xgboost/src/src/data/sparse_page_source.h | 10 xgboost-0.90.0.1/xgboost/src/src/learner.cc | 23 xgboost-0.90.0.1/xgboost/src/src/linear/updater_coordinate.cc | 15 xgboost-0.90.0.1/xgboost/src/src/linear/updater_gpu_coordinate.cu | 92 xgboost-0.90.0.1/xgboost/src/src/metric/elementwise_metric.cu | 46 xgboost-0.90.0.1/xgboost/src/src/metric/metric.cc | 2 xgboost-0.90.0.1/xgboost/src/src/metric/metric_common.h |only xgboost-0.90.0.1/xgboost/src/src/metric/multiclass_metric.cc | 126 xgboost-0.90.0.1/xgboost/src/src/metric/multiclass_metric.cu |only xgboost-0.90.0.1/xgboost/src/src/metric/rank_metric.cc | 158 - xgboost-0.90.0.1/xgboost/src/src/objective/multiclass_obj.cu | 16 xgboost-0.90.0.1/xgboost/src/src/objective/regression_obj.cu | 12 xgboost-0.90.0.1/xgboost/src/src/predictor/gpu_predictor.cu | 196 - xgboost-0.90.0.1/xgboost/src/src/tree/split_evaluator.cc | 18 xgboost-0.90.0.1/xgboost/src/src/tree/split_evaluator.h | 5 xgboost-0.90.0.1/xgboost/src/src/tree/updater_basemaker-inl.h | 1 xgboost-0.90.0.1/xgboost/src/src/tree/updater_colmaker.cc | 15 xgboost-0.90.0.1/xgboost/src/src/tree/updater_gpu.cu | 338 +- xgboost-0.90.0.1/xgboost/src/src/tree/updater_gpu_common.cuh | 33 xgboost-0.90.0.1/xgboost/src/src/tree/updater_gpu_hist.cu | 1464 +++++----- xgboost-0.90.0.1/xgboost/src/src/tree/updater_histmaker.cc | 6 xgboost-0.90.0.1/xgboost/src/src/tree/updater_quantile_hist.cc | 148 - xgboost-0.90.0.1/xgboost/src/src/tree/updater_quantile_hist.h | 124 xgboost-0.90.0.1/xgboost/src/src/tree/updater_skmaker.cc | 2 xgboost-0.90.0.1/xgboost/src/xgboost_R.h | 2 xgboost-0.90.0.1/xgboost/src/xgboost_custom.cc | 2 xgboost-0.90.0.1/xgboost/tests/testthat/test_callbacks.R | 2 xgboost-0.90.0.1/xgboost/tests/testthat/test_custom_objective.R | 6 xgboost-0.90.0.1/xgboost/tests/testthat/test_dmatrix.R | 16 xgboost-0.90.0.1/xgboost/tests/testthat/test_helpers.R | 3 xgboost-0.90.0.1/xgboost/tests/testthat/test_interactions.R | 2 xgboost-0.90.0.1/xgboost/vignettes/discoverYourData.Rmd | 4 xgboost-0.90.0.1/xgboost/vignettes/xgboostPresentation.Rmd | 2 xgboost-0.90.0.1/xgboost/vignettes/xgboostfromJSON.Rmd |only 161 files changed, 4471 insertions(+), 3142 deletions(-)
Title: Open Source OCR Engine
Description: Bindings to 'Tesseract' <https://opensource.google.com/projects/tesseract>:
a powerful optical character recognition (OCR) engine that supports over 100 languages.
The engine is highly configurable in order to tune the detection algorithms and
obtain the best possible results.
Author: Jeroen Ooms [aut, cre] (<https://orcid.org/0000-0002-4035-0289>)
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>
Diff between tesseract versions 4.0 dated 2018-11-02 and 4.1 dated 2019-07-25
DESCRIPTION | 6 - MD5 | 18 ++-- NEWS | 5 + build/vignette.rds |binary inst/doc/intro.R | 12 ++ inst/doc/intro.Rmd | 30 +++++++ inst/doc/intro.html | 209 ++++++++++++++++++++++++++++++++++++++-------------- src/Makevars.win | 2 src/tesseract.cpp | 6 + vignettes/intro.Rmd | 30 +++++++ 10 files changed, 248 insertions(+), 70 deletions(-)
Title: Diverse Cluster Ensemble in R
Description: Performs cluster analysis using an ensemble
clustering framework, Chiu & Talhouk (2018)
<doi:10.1186/s12859-017-1996-y>. Results from a diverse set of
algorithms are pooled together using methods such as majority voting,
K-Modes, LinkCluE, and CSPA. There are options to compare cluster
assignments across algorithms using internal and external indices,
visualizations such as heatmaps, and significance testing for the
existence of clusters.
Author: Derek Chiu [aut, cre],
Aline Talhouk [aut],
Johnson Liu [ctb, com]
Maintainer: Derek Chiu <dchiu@bccrc.ca>
Diff between diceR versions 0.5.2 dated 2019-03-08 and 0.6.0 dated 2019-07-25
DESCRIPTION | 9 - MD5 | 41 ++--- NAMESPACE | 1 NEWS.md | 8 + R/algorithms.R | 16 +- R/consensus_cluster.R | 1 R/consensus_evaluate.R | 4 R/consensus_funs.R | 41 ++++- R/dice.R | 8 - R/external_validity.R | 18 +- R/graphs.R | 8 - README.md | 94 ++++++++---- inst/doc/overview.Rmd | 2 inst/doc/overview.html | 267 ++++++++++++++++++----------------- man/CSPA.Rd | 5 man/LCA.Rd |only man/LCE.Rd | 3 man/dice.Rd | 11 - man/k_modes.Rd | 3 man/majority_voting.Rd | 3 tests/testthat/test-consensus_funs.R | 5 vignettes/overview.Rmd | 2 22 files changed, 323 insertions(+), 227 deletions(-)
Title: The Complete R6 Probability Distributions Interface
Description: An R6 object oriented distributions package. Unified interface for 36 probability distributions and 11 kernels including functionality for multiple scientific types. Additionally functionality for composite distributions and numerical imputation. Design patterns including wrappers and decorators are described in Gamma et al. (1994, ISBN:0-201-63361-2). For quick reference of probability distributions including d/p/q/r functions and results we refer to McLaughlin, M. P. (2001). Additionally Devroye (1986, ISBN:0-387-96305-7) for sampling the Dirichlet distribution, Gentle (2009) <doi:10.1007/978-0-387-98144-4> for sampling the Multivariate Normal distribution and Michael et al. (1976) <doi:10.2307/2683801> for sampling the Wald distribution.
Author: Raphael Sonabend [aut, cre] (<https://orcid.org/0000-0001-9225-4654>),
Franz Kiraly [aut],
Peter Ruckdeschel [ctb] (Author of distr),
Matthias Kohl [ctb] (Author of distr),
Shen Chen [ctb],
Jordan Deenichin [ctb],
Chengyang Gao [ctb],
Chloe Zhaoyuan Gu [ctb],
Yunjie He [ctb],
Xiaowen Huang [ctb],
Shuhan Liu [ctb],
Runlong Yu [ctb],
Chijing Zeng [ctb],
Qian Zhou [ctb]
Maintainer: Raphael Sonabend <raphael.sonabend.15@ucl.ac.uk>
Diff between distr6 versions 1.0.0 dated 2019-07-19 and 1.0.1 dated 2019-07-25
distr6-1.0.0/distr6/tests/testthat/test-DistLoglogistic.R |only distr6-1.0.1/distr6/DESCRIPTION | 6 distr6-1.0.1/distr6/MD5 | 32 +-- distr6-1.0.1/distr6/NEWS.md | 7 distr6-1.0.1/distr6/R/Distribution.R | 139 ++++++-------- distr6-1.0.1/distr6/R/Distribution_Kernel.R | 12 + distr6-1.0.1/distr6/R/ParameterSet.R | 14 - distr6-1.0.1/distr6/R/SetInterval.R | 2 distr6-1.0.1/distr6/R/SetInterval_Set.R | 2 distr6-1.0.1/distr6/README.md | 18 + distr6-1.0.1/distr6/inst/doc/distr6.R | 1 distr6-1.0.1/distr6/inst/doc/distr6.html | 12 - distr6-1.0.1/distr6/inst/doc/distr6.rmd | 1 distr6-1.0.1/distr6/man/Distribution.Rd | 2 distr6-1.0.1/distr6/man/parameters.Rd | 13 - distr6-1.0.1/distr6/tests/testthat/test-DistLogLogistic.R |only distr6-1.0.1/distr6/tests/testthat/test-KernelUniform.R | 2 distr6-1.0.1/distr6/vignettes/distr6.rmd | 1 18 files changed, 133 insertions(+), 131 deletions(-)
Title: Exploratory Chemometrics for Spectroscopy
Description: A collection of functions for top-down exploratory data analysis
of spectral data including nuclear magnetic resonance (NMR), infrared (IR),
Raman, X-ray fluorescence (XRF) and other similar types of spectroscopy.
Includes functions for plotting and inspecting spectra, peak alignment,
hierarchical cluster analysis (HCA), principal components analysis (PCA) and
model-based clustering. Robust methods appropriate for this type of
high-dimensional data are available. ChemoSpec is designed for structured
experiments, such as metabolomics investigations, where the samples fall into
treatment and control groups. Graphical output is formatted consistently for
publication quality plots. ChemoSpec is intended to be very user friendly and
to help you get usable results quickly. A vignette covering typical operations
is available.
Author: Bryan A. Hanson [aut, cre] (<https://orcid.org/0000-0003-3536-8246>),
Mike Bostock [cph, ctb] (author of the d3.js library used by
plotSpectraJS, http://d3js.org),
Matt Keinsley [ctb] (author of initial AOV-PCA code)
Maintainer: Bryan A. Hanson <hanson@depauw.edu>
Diff between ChemoSpec versions 5.1.9 dated 2019-06-09 and 5.1.48 dated 2019-07-25
ChemoSpec-5.1.48/ChemoSpec/DESCRIPTION | 28 ++++---- ChemoSpec-5.1.48/ChemoSpec/MD5 | 50 ++++++++------- ChemoSpec-5.1.48/ChemoSpec/NEWS.md | 21 ++++++ ChemoSpec-5.1.48/ChemoSpec/R/evalClusters.R | 3 ChemoSpec-5.1.48/ChemoSpec/R/files2SpectraObject.R | 6 - ChemoSpec-5.1.48/ChemoSpec/R/hcaSpectra.R | 3 ChemoSpec-5.1.48/ChemoSpec/R/hmapSpectra.R | 7 +- ChemoSpec-5.1.48/ChemoSpec/R/matrix2SpectraObject.R | 58 +++++++++++++++--- ChemoSpec-5.1.48/ChemoSpec/R/plotScoresRGL.R | 32 +++++++-- ChemoSpec-5.1.48/ChemoSpec/R/seXy.R | 8 +- ChemoSpec-5.1.48/ChemoSpec/R/surveySpectra2.R | 4 - ChemoSpec-5.1.48/ChemoSpec/build/vignette.rds |binary ChemoSpec-5.1.48/ChemoSpec/data/SrE.IR.RData |binary ChemoSpec-5.1.48/ChemoSpec/data/SrE.NMR.RData |binary ChemoSpec-5.1.48/ChemoSpec/data/alignMUD.RData |binary ChemoSpec-5.1.48/ChemoSpec/data/metMUD1.RData |binary ChemoSpec-5.1.48/ChemoSpec/data/metMUD2.RData |binary ChemoSpec-5.1.48/ChemoSpec/inst/doc/ChemoSpec.pdf |binary ChemoSpec-5.1.48/ChemoSpec/inst/doc/IntroPCA.R |only ChemoSpec-5.1.48/ChemoSpec/inst/doc/IntroPCA.Rmd |only ChemoSpec-5.1.48/ChemoSpec/inst/doc/IntroPCA.pdf |only ChemoSpec-5.1.48/ChemoSpec/inst/tinytest |only ChemoSpec-5.1.48/ChemoSpec/man/files2SpectraObject.Rd | 6 - ChemoSpec-5.1.48/ChemoSpec/man/hmapSpectra.Rd | 5 - ChemoSpec-5.1.48/ChemoSpec/man/plotScoresRGL.Rd | 9 ++ ChemoSpec-5.1.48/ChemoSpec/tests/tinytest.R |only ChemoSpec-5.1.48/ChemoSpec/vignettes/IntroPCA.Rmd |only ChemoSpec-5.1.9/ChemoSpec/tests/testthat |only ChemoSpec-5.1.9/ChemoSpec/tests/testthat.R |only 29 files changed, 171 insertions(+), 69 deletions(-)
Title: Convert Files to and from Binary Objects (BLOBs)
Description: Converts files to and from flobs.
A flob is a file that was
read into binary in integer-mode as little endian,
saved as the single element of a named list (where the name is the name
of the original file) and then serialized before being coerced into a blob.
Flobs are useful for writing and reading files to and from databases.
Author: Joe Thorley [aut, cre] (<https://orcid.org/0000-0002-7683-4592>),
Poisson Consulting [cph, fnd]
Maintainer: Joe Thorley <joe@poissonconsulting.ca>
Diff between flobr versions 0.1.0 dated 2018-11-14 and 0.2.0 dated 2019-07-25
DESCRIPTION | 29 +++++++++------- MD5 | 40 ++++++++++++++--------- NAMESPACE | 2 - NEWS.md | 11 ++++++ R/err.R |only R/ext.R |only R/flob.R | 50 ++++++++++++++++++---------- R/name.R |only R/namespace.R | 2 - R/path.R |only R/sysdata.rda |binary R/utils.R | 24 ++++++++++++- README.md | 76 +++++++++++++++++--------------------------- data/flob_obj.rda |binary man/flob.Rd | 8 ++-- man/flob_ext.Rd | 2 - man/flob_name.Rd |only man/flobr-package.Rd | 7 +++- man/unflob.Rd | 21 +++++++++--- tests/testthat/test-check.R | 2 - tests/testthat/test-err.R |only tests/testthat/test-ext.R |only tests/testthat/test-flobr.R | 36 +++++++++++++++----- tests/testthat/test-name.R |only tests/testthat/test-path.R |only tests/testthat/test-tools.R |only 26 files changed, 194 insertions(+), 116 deletions(-)
Title: Retrieving Information of Proteins from Uniprot
Description: Connect to Uniprot <https://www.uniprot.org/> to retrieve information about proteins using their accession number such information could be name or taxonomy information.
Author: Ali Mostafa [aut],
Mohamed Soudy [aut, cre]
Maintainer: Mohamed Soudy <MohmedSoudy2009@gmail.com>
Diff between UniprotR versions 1.0.0 dated 2019-07-23 and 1.0.1 dated 2019-07-25
UniprotR-1.0.0/UniprotR/R/GetStructureInfo.R |only UniprotR-1.0.0/UniprotR/man/GetStructureInfo.Rd |only UniprotR-1.0.1/UniprotR/DESCRIPTION | 6 UniprotR-1.0.1/UniprotR/MD5 | 94 ++++------ UniprotR-1.0.1/UniprotR/NAMESPACE | 1 UniprotR-1.0.1/UniprotR/R/ConvertID.R | 11 - UniprotR-1.0.1/UniprotR/R/GetCross_references_Information.R | 8 UniprotR-1.0.1/UniprotR/R/GetExpression.R | 7 UniprotR-1.0.1/UniprotR/R/GetFamily_Domains.R | 7 UniprotR-1.0.1/UniprotR/R/GetGeneral_Information.R | 7 UniprotR-1.0.1/UniprotR/R/GetMiscellaneous.R | 7 UniprotR-1.0.1/UniprotR/R/GetNamesTaxa.R | 5 UniprotR-1.0.1/UniprotR/R/GetPTM_Processsing.R | 5 UniprotR-1.0.1/UniprotR/R/GetPathology_Biotech.R | 7 UniprotR-1.0.1/UniprotR/R/GetProteinFunction.R | 7 UniprotR-1.0.1/UniprotR/R/GetProteinGOInfo.R | 7 UniprotR-1.0.1/UniprotR/R/GetProteinInteractions.R | 7 UniprotR-1.0.1/UniprotR/R/GetProteoAnnotator.R | 7 UniprotR-1.0.1/UniprotR/R/GetPublication.R | 5 UniprotR-1.0.1/UniprotR/R/GetSequences.R | 5 UniprotR-1.0.1/UniprotR/R/GetSubcellular_location.R | 3 UniprotR-1.0.1/UniprotR/R/GetTaxaidentifier.R | 7 UniprotR-1.0.1/UniprotR/R/GetTaxonomic_lineage.R | 5 UniprotR-1.0.1/UniprotR/R/GetpdbStructure.R | 3 UniprotR-1.0.1/UniprotR/R/GetproteinNetwork.R | 5 UniprotR-1.0.1/UniprotR/R/PlotProteinTaxa.R | 2 UniprotR-1.0.1/UniprotR/R/PlotSummaryInfo.R | 4 UniprotR-1.0.1/UniprotR/R/UniprotR.r | 2 UniprotR-1.0.1/UniprotR/man/ConvertID.Rd | 11 - UniprotR-1.0.1/UniprotR/man/GetCross_references_Information.Rd | 8 UniprotR-1.0.1/UniprotR/man/GetExpression.Rd | 7 UniprotR-1.0.1/UniprotR/man/GetFamily_Domains.Rd | 7 UniprotR-1.0.1/UniprotR/man/GetGeneral_Information.Rd | 7 UniprotR-1.0.1/UniprotR/man/GetMiscellaneous.Rd | 7 UniprotR-1.0.1/UniprotR/man/GetNamesTaxa.Rd | 5 UniprotR-1.0.1/UniprotR/man/GetPTM_Processsing.Rd | 5 UniprotR-1.0.1/UniprotR/man/GetPathology_Biotech.Rd | 7 UniprotR-1.0.1/UniprotR/man/GetProteinAnnontate.Rd | 9 UniprotR-1.0.1/UniprotR/man/GetProteinFunction.Rd | 7 UniprotR-1.0.1/UniprotR/man/GetProteinGOInfo.Rd | 7 UniprotR-1.0.1/UniprotR/man/GetProteinInteractions.Rd | 7 UniprotR-1.0.1/UniprotR/man/GetPublication.Rd | 5 UniprotR-1.0.1/UniprotR/man/GetSequences.Rd | 5 UniprotR-1.0.1/UniprotR/man/GetSubcellular_location.Rd | 3 UniprotR-1.0.1/UniprotR/man/GetTaxaidentifier.Rd | 8 UniprotR-1.0.1/UniprotR/man/GetTaxonomic_lineage.Rd | 5 UniprotR-1.0.1/UniprotR/man/GetpdbStructure.Rd | 3 UniprotR-1.0.1/UniprotR/man/GetproteinNetwork.Rd | 3 UniprotR-1.0.1/UniprotR/man/UniprotR.Rd | 2 49 files changed, 203 insertions(+), 159 deletions(-)
Title: Unit Testing for R
Description: Software testing is important, but, in part because it is
frustrating and boring, many of us avoid it. 'testthat' is a testing framework
for R that is easy to learn and use, and integrates with your existing 'workflow'.
Author: Hadley Wickham [aut, cre],
RStudio [cph, fnd],
R Core team [ctb] (Implementation of utils::recover())
Maintainer: Hadley Wickham <hadley@rstudio.com>
Diff between testthat versions 2.2.0 dated 2019-07-22 and 2.2.1 dated 2019-07-25
DESCRIPTION | 6 +++--- MD5 | 9 +++++---- NEWS.md | 5 +++++ R/test-example.R | 15 +++++++++------ man/test_examples.Rd | 6 ++++-- tests/testthat/test-test-example.R |only 6 files changed, 26 insertions(+), 15 deletions(-)
Title: Forecasting Using State Space Models
Description: Functions implementing Single Source of Error state space models for purposes of time series analysis and forecasting.
The package includes Exponential Smoothing (Hyndman et al., 2008, <doi: 10.1007/978-3-540-71918-2>),
SARIMA (Svetunkov & Boylan, 2019 <doi: 10.1080/00207543.2019.1600764>),
Complex Exponential Smoothing (Svetunkov & Kourentzes, 2018, <doi: 10.13140/RG.2.2.24986.29123>),
Simple Moving Average (Svetunkov & Petropoulos, 2018 <doi: 10.1080/00207543.2017.1380326>),
Vector Exponential Smoothing (de Silva et al., 2010, <doi: 10.1177/1471082X0901000401>) in state space forms,
several simulation functions and intermittent demand state space models. It also allows dealing with
intermittent demand based on the iETS framework (Svetunkov & Boylan, 2017, <doi: 10.13140/RG.2.2.35897.06242>).
Author: Ivan Svetunkov [aut, cre] (Lecturer at Centre for Marketing Analytics
and Forecasting, Lancaster University, UK)
Maintainer: Ivan Svetunkov <ivan@svetunkov.ru>
Diff between smooth versions 2.5.1 dated 2019-06-14 and 2.5.2 dated 2019-07-25
smooth-2.5.1/smooth/R/gsi.R |only smooth-2.5.1/smooth/man/gsi.Rd |only smooth-2.5.2/smooth/DESCRIPTION | 12 smooth-2.5.2/smooth/MD5 | 112 +- smooth-2.5.2/smooth/NAMESPACE | 2 smooth-2.5.2/smooth/NEWS | 23 smooth-2.5.2/smooth/R/RcppExports.R | 32 smooth-2.5.2/smooth/R/autoces.R | 2 smooth-2.5.2/smooth/R/ces.R | 78 +- smooth-2.5.2/smooth/R/es.R | 88 +- smooth-2.5.2/smooth/R/gum.R | 52 - smooth-2.5.2/smooth/R/isFunctions.R | 2 smooth-2.5.2/smooth/R/methods.R | 92 +- smooth-2.5.2/smooth/R/msarima.R | 32 smooth-2.5.2/smooth/R/oes.R | 283 ++++--- smooth-2.5.2/smooth/R/oesg.R | 177 ++-- smooth-2.5.2/smooth/R/simces.R | 44 - smooth-2.5.2/smooth/R/simes.R | 74 - smooth-2.5.2/smooth/R/simgum.R | 32 smooth-2.5.2/smooth/R/simssarima.R | 24 smooth-2.5.2/smooth/R/simves.R | 516 +++++++++---- smooth-2.5.2/smooth/R/sma.R | 10 smooth-2.5.2/smooth/R/ssarima.R | 14 smooth-2.5.2/smooth/R/ssfunctions.R | 524 ++++++++----- smooth-2.5.2/smooth/R/ves.R | 817 ++++++++++++++------- smooth-2.5.2/smooth/R/viss.R | 8 smooth-2.5.2/smooth/R/vmethods.R | 54 - smooth-2.5.2/smooth/R/vssFunctions.R | 269 ++++-- smooth-2.5.2/smooth/README.md | 35 smooth-2.5.2/smooth/build/partial.rdb |binary smooth-2.5.2/smooth/build/vignette.rds |binary smooth-2.5.2/smooth/inst/doc/ces.html | 132 +-- smooth-2.5.2/smooth/inst/doc/es.html | 264 +++--- smooth-2.5.2/smooth/inst/doc/gum.html | 100 +- smooth-2.5.2/smooth/inst/doc/oes.Rmd | 2 smooth-2.5.2/smooth/inst/doc/oes.html | 231 +++-- smooth-2.5.2/smooth/inst/doc/simulate.html | 84 +- smooth-2.5.2/smooth/inst/doc/sma.html | 33 smooth-2.5.2/smooth/inst/doc/smooth.html | 8 smooth-2.5.2/smooth/inst/doc/ssarima.html | 164 ++-- smooth-2.5.2/smooth/inst/doc/ves.R | 3 smooth-2.5.2/smooth/inst/doc/ves.Rmd | 7 smooth-2.5.2/smooth/inst/doc/ves.html | 28 smooth-2.5.2/smooth/man/auto.ces.Rd | 2 smooth-2.5.2/smooth/man/ces.Rd | 2 smooth-2.5.2/smooth/man/es.Rd | 11 smooth-2.5.2/smooth/man/forecast.smooth.Rd | 4 smooth-2.5.2/smooth/man/isFunctions.Rd | 2 smooth-2.5.2/smooth/man/oes.Rd | 8 smooth-2.5.2/smooth/man/sim.ves.Rd | 14 smooth-2.5.2/smooth/man/ves.Rd | 39 - smooth-2.5.2/smooth/src/RcppExports.cpp | 64 - smooth-2.5.2/smooth/src/ssGeneral.cpp | 216 ++--- smooth-2.5.2/smooth/src/ssOccurrence.cpp | 20 smooth-2.5.2/smooth/tests/testthat/test_simulate.R | 2 smooth-2.5.2/smooth/tests/testthat/test_ves.R | 2 smooth-2.5.2/smooth/vignettes/oes.Rmd | 2 smooth-2.5.2/smooth/vignettes/ves.Rmd | 7 58 files changed, 3010 insertions(+), 1849 deletions(-)
Title: Shrinkage Covariance Matrix Estimators
Description: Provides nonparametric Steinian shrinkage estimators of the covariance matrix that are suitable in high dimensional settings, that is when the number of variables is larger than the sample size.
Author: Anestis Touloumis [aut, cre] (0000-0002-5965-1639)
Maintainer: Anestis Touloumis <A.Touloumis@brighton.ac.uk>
Diff between ShrinkCovMat versions 1.2.0 dated 2017-07-11 and 1.3.0 dated 2019-07-25
ShrinkCovMat-1.2.0/ShrinkCovMat/README.md |only ShrinkCovMat-1.3.0/ShrinkCovMat/DESCRIPTION | 22 - ShrinkCovMat-1.3.0/ShrinkCovMat/MD5 | 49 ++- ShrinkCovMat-1.3.0/ShrinkCovMat/NAMESPACE | 14 ShrinkCovMat-1.3.0/ShrinkCovMat/R/RcppExports.R |only ShrinkCovMat-1.3.0/ShrinkCovMat/R/ShrinkCovMat-package.R |only ShrinkCovMat-1.3.0/ShrinkCovMat/R/ShrinkCovMat_data.R |only ShrinkCovMat-1.3.0/ShrinkCovMat/R/print.shrinkcovmathat.R | 25 + ShrinkCovMat-1.3.0/ShrinkCovMat/R/print.targetsel.R |only ShrinkCovMat-1.3.0/ShrinkCovMat/R/shrinkcovmat.equal.R | 121 ++++--- ShrinkCovMat-1.3.0/ShrinkCovMat/R/shrinkcovmat.identity.R | 120 ++++--- ShrinkCovMat-1.3.0/ShrinkCovMat/R/shrinkcovmat.unequal.R | 152 +++++---- ShrinkCovMat-1.3.0/ShrinkCovMat/R/shrinkcovmathat.default.R | 18 - ShrinkCovMat-1.3.0/ShrinkCovMat/R/targetsel.R |only ShrinkCovMat-1.3.0/ShrinkCovMat/R/targetsel.default.R |only ShrinkCovMat-1.3.0/ShrinkCovMat/R/targetselection.R | 169 +++++------ ShrinkCovMat-1.3.0/ShrinkCovMat/data/colon.rda |binary ShrinkCovMat-1.3.0/ShrinkCovMat/inst/NEWS | 58 +++ ShrinkCovMat-1.3.0/ShrinkCovMat/man/ShrinkCovMat-package.Rd | 61 ++- ShrinkCovMat-1.3.0/ShrinkCovMat/man/colon.Rd | 35 +- ShrinkCovMat-1.3.0/ShrinkCovMat/man/shrinkcovmat.equal.Rd | 66 ++-- ShrinkCovMat-1.3.0/ShrinkCovMat/man/shrinkcovmat.identity.Rd | 66 ++-- ShrinkCovMat-1.3.0/ShrinkCovMat/man/shrinkcovmat.unequal.Rd | 69 ++-- ShrinkCovMat-1.3.0/ShrinkCovMat/man/targetselection.Rd | 68 ++-- ShrinkCovMat-1.3.0/ShrinkCovMat/src |only ShrinkCovMat-1.3.0/ShrinkCovMat/tests |only 26 files changed, 666 insertions(+), 447 deletions(-)
Title: Fit and Compare Species-Area Relationship Models Using
Multimodel Inference
Description: Implements the basic elements of the multi-model
inference paradigm for up to twenty species-area relationship models (SAR), using simple
R list-objects and functions, as in Triantis et al. 2012 <DOI:10.1111/j.1365-2699.2011.02652.x>.
The package is scalable and users can easily create their own model and data objects. Additional
SAR related functions are provided.
Author: Thomas J. Matthews [aut, cre] (<https://orcid.org/0000-0002-7624-244X>),
Francois Guilhaumon [aut] (<https://orcid.org/0000-0003-4707-8932>),
Kevin Cazelles [rev] (<https://orcid.org/0000-0001-6619-9874>)
Maintainer: Thomas J. Matthews <txm676@gmail.com>
Diff between sars versions 1.1.2 dated 2019-05-27 and 1.2.0 dated 2019-07-25
DESCRIPTION | 6 +-- MD5 | 24 +++++++------- NAMESPACE | 1 NEWS.md | 4 ++ R/class_plot.R | 3 + R/class_print.R | 2 + R/class_summary.R | 17 +++++----- R/mod_linear_power.R | 69 ++++++++++++++++++++++++------------------ README.md | 17 ++++------ inst/doc/sars-r-package.html | 30 +++++++++--------- man/lin_pow.Rd | 51 +++++++++++++++++-------------- man/summary.sars.Rd | 14 ++++---- tests/testthat/test_lin_pow.R | 14 ++++++++ 13 files changed, 147 insertions(+), 105 deletions(-)
Title: Parallel Use of Statistical Packages in Teaching
Description: When teaching statistics, it can often be desirable to
uncouple the content from specific software packages. To ease such
efforts, the Rosetta Stats website (<https://rosettastats.com>) allows
comparing analyses in different packages. This package is the companion
to the Rosetta Stats website, aiming to provide functions that produce
output that is similar to output from other statistical packages, thereby
facilitating 'software-agnostic' teaching of statistics.
Author: Gjalt-Jorn Peters [aut, cre] (<https://orcid.org/0000-0002-0336-9589>),
Ron Pat-El [ctb] (<https://orcid.org/0000-0002-4742-0163>),
Peter Verboon [ctb] (<https://orcid.org/0000-0001-8656-0890>)
Maintainer: Gjalt-Jorn Peters <gjalt-jorn@userfriendlyscience.com>
Diff between rosetta versions 0.1.0 dated 2019-07-23 and 0.1.1 dated 2019-07-25
DESCRIPTION | 7 ++++--- MD5 | 12 ++++++------ NAMESPACE | 3 +++ R/fanova.R | 6 ++++++ R/regr.R | 8 ++++++++ man/fanova.Rd | 7 +++++++ man/regr.Rd | 12 ++++++++++++ 7 files changed, 46 insertions(+), 9 deletions(-)
Title: Run Dose-Response MBNMA Models
Description: Fits Bayesian dose-response model-based network meta-analysis (MBNMA)
that incorporate multiple doses within an agent by modelling different dose-response functions, as
described by Mawdsley et al. (2016) <doi:10.1002/psp4.12091>.
By modelling dose-response relationships this can connect networks of evidence that might
otherwise be disconnected, and can improve precision on treatment estimates. Several common
dose-response functions are provided; others may be added by the user. Various characteristics
and assumptions can be flexibly added to the models, such as shared class effects. The consistency
of direct and indirect evidence in the network can be assessed using unrelated mean effects models
and/or by node-splitting at the treatment level.
Author: Hugo Pedder [aut, cre],
David Mawdsley [rev],
Nicky Welton [rev],
Sofia Dias [rev],
Meg Bennetts [rev],
Martin Boucher [rev],
Adil Karim [ctb]
Maintainer: Hugo Pedder <hugopedder@gmail.com>
Diff between MBNMAdose versions 0.2.2 dated 2019-07-23 and 0.2.3 dated 2019-07-25
DESCRIPTION | 6 MD5 | 16 +- NEWS.md | 11 + README.md | 24 +-- build/partial.rdb |binary inst/doc/mbnmadose.R | 114 ++++++++-------- inst/doc/mbnmadose.Rmd | 32 ++-- inst/doc/mbnmadose.html | 326 +++++++++++++++++++++++++++++++++++++++--------- vignettes/mbnmadose.Rmd | 32 ++-- 9 files changed, 386 insertions(+), 175 deletions(-)
Title: Data Exchange Between R and 'LabKey' Server
Description: The 'LabKey' client library for R makes it easy for R users to
load live data from a 'LabKey' Server, <http://www.labkey.com/>,
into the R environment for analysis, provided users have permissions
to read the data. It also enables R users to insert, update, and
delete records stored on a 'LabKey' Server, provided they have appropriate
permissions to do so.
Author: Peter Hussey
Maintainer: Cory Nathe <cnathe@labkey.com>
Diff between Rlabkey versions 2.3.0 dated 2019-05-25 and 2.3.1 dated 2019-07-25
DESCRIPTION | 8 ++++---- MD5 | 32 ++++++++++++++++---------------- NEWS | 4 ++++ R/labkey.getSchemas.R | 2 +- R/labkey.selectRows.R | 3 +++ R/makeFilter.R | 4 ++-- inst/doc/RlabkeyExample.pdf |binary man/Rlabkey-package.Rd | 4 ++-- man/getFolderPath.Rd | 2 +- man/getLookups.Rd | 2 +- man/getSchema.Rd | 2 +- man/labkey.acceptSelfSignedCerts.Rd | 2 +- man/labkey.getQueryViews.Rd | 2 +- man/labkey.saveBatch.Rd | 2 +- man/labkey.selectRows.Rd | 2 +- man/labkey.webdav.put.Rd | 2 +- man/lsFolders.Rd | 2 +- 17 files changed, 41 insertions(+), 34 deletions(-)
Title: Simulates Correlated Multinomial Responses
Description: Simulates correlated multinomial responses conditional on a marginal model specification.
Author: Anestis Touloumis [aut, cre] (0000-0002-5965-1639)
Maintainer: Anestis Touloumis <A.Touloumis@brighton.ac.uk>
Diff between SimCorMultRes versions 1.6.0 dated 2018-07-10 and 1.7.0 dated 2019-07-25
DESCRIPTION | 12 MD5 | 52 ++-- NAMESPACE | 1 R/SimCorMultRes-package.R | 12 R/SimCorMultRes_internals.R | 535 ++++++++++++++++++++++++++----------------- R/rbin.R | 88 ++++--- R/rmult.acl.R |only R/rmult.bcl.R | 75 +++--- R/rmult.clm.R | 80 +++--- R/rmult.crm.R | 82 +++--- R/rnorta.R | 105 ++++---- R/rsmvnorm.R | 58 ++-- build/vignette.rds |binary inst/NEWS | 34 ++ inst/doc/SimCorMultRes.R | 197 ++++++++++----- inst/doc/SimCorMultRes.Rmd | 246 ++++++++++++++----- inst/doc/SimCorMultRes.html | 352 ++++++++++++++++++++-------- man/SimCorMultRes-package.Rd | 9 man/rbin.Rd | 50 ++-- man/rmult.acl.Rd |only man/rmult.bcl.Rd | 34 +- man/rmult.clm.Rd | 38 +-- man/rmult.crm.Rd | 32 +- man/rnorta.Rd | 45 ++- man/rsmvnorm.Rd | 13 - tests |only vignettes/SimCorMultRes.Rmd | 246 ++++++++++++++----- 27 files changed, 1549 insertions(+), 847 deletions(-)
Title: Uncertain Interval Methods for Three-Way Cut-Point Determination
in Tests
Description: Functions for the determination of an uncertain interval, that is, a
range of test scores that is inconclusive and does not allow a classification other
than 'Uncertain' (Reference: J.A. Landsheer (2016) <doi:10.1371/journal.pone.0166007>).
Author: Hans Landsheer [aut, cre]
Maintainer: Hans Landsheer <j.a.landsheer@uu.nl>
Diff between UncertainInterval versions 0.4.7 dated 2018-04-03 and 0.5.0 dated 2019-07-25
DESCRIPTION | 24 MD5 | 72 +- NAMESPACE | 7 R/UncertainInterval.R | 49 + R/barplotMD.R |only R/check.data.R | 70 +- R/get.intersection.R | 4 R/greyzone.R |only R/nlopt.ui.R | 104 ++- R/nlopt.ui.general.R | 120 ++- R/nomogram.R | 81 +- R/plotMD.R | 62 + R/quality.threshold.R | 141 +++- R/quality.threshold.uncertain.R | 140 +++- R/reliable.predictive.values.R |only R/tg.roc.R |only R/tostbegg2.R | 21 R/ui.binormal.R | 106 ++- R/ui.nonpar.R | 137 +++- R/ui.ordinal.R | 327 +++++++--- build/vignette.rds |binary inst/doc/UI-vignette.Rmd | 84 +- inst/doc/UI-vignette.html | 1171 ++++++++++++++++++++++++------------- man/RPV.Rd |only man/TG.ROC.Rd |only man/UncertainInterval.Rd | 47 + man/barplotMD.Rd |only man/check.data.Rd | 42 - man/get.intersection.Rd | 5 man/greyzone.Rd |only man/nlopt.ui.Rd | 102 ++- man/nlopt.ui.general.Rd | 145 +++- man/nomogram.Rd | 85 +- man/plotMD.Rd | 77 +- man/quality.threshold.Rd | 121 +++ man/quality.threshold.uncertain.Rd | 137 +++- man/tostbegg2.Rd | 20 man/ui.binormal.Rd | 127 ++-- man/ui.nonpar.Rd | 147 +++- man/ui.ordinal.Rd | 340 +++++++--- vignettes/UI-vignette.Rmd | 84 +- 41 files changed, 2926 insertions(+), 1273 deletions(-)
More information about UncertainInterval at CRAN
Permanent link
Title: Ordinal Data Clustering, Co-Clustering and Classification
Description: Ordinal data classification, clustering and co-clustering using model-based approach with the Bos distribution for ordinal data (Christophe Biernacki and Julien Jacques (2016) <doi:10.1007/s11222-015-9585-2>).
Author: Margot Selosse, Julien Jacques, Christophe Biernacki
Maintainer: Margot Selosse <margot.selosse@gmail.com>
Diff between ordinalClust versions 1.3.3 dated 2019-06-19 and 1.3.4 dated 2019-07-25
DESCRIPTION | 8 ++--- MD5 | 20 ++++++------ R/bossummary.R | 22 +++++++++----- build/vignette.rds |binary inst/doc/ordinalClust.R | 16 +++++----- inst/doc/ordinalClust.Rmd | 16 +++++----- inst/doc/ordinalClust.html | 22 +++++++------- src/Bos.cpp | 70 +++++++++++++++++++++++++-------------------- src/Makevars | 2 - src/ordinalClust.cpp | 70 +++++++++++++++++++++++++++++---------------- vignettes/ordinalClust.Rmd | 16 +++++----- 11 files changed, 154 insertions(+), 108 deletions(-)
Title: Advanced Graphics and Image-Processing in R
Description: Bindings to 'ImageMagick': the most comprehensive open-source image
processing library available. Supports many common formats (png, jpeg, tiff,
pdf, etc) and manipulations (rotate, scale, crop, trim, flip, blur, etc).
All operations are vectorized via the Magick++ STL meaning they operate either
on a single frame or a series of frames for working with layers, collages,
or animation. In RStudio images are automatically previewed when printed to
the console, resulting in an interactive editing environment. The latest
version of the package includes a native graphics device for creating
in-memory graphics or drawing onto images using pixel coordinates.
Author: Jeroen Ooms [aut, cre] (<https://orcid.org/0000-0002-4035-0289>)
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>
Diff between magick versions 2.0 dated 2018-10-05 and 2.1 dated 2019-07-25
DESCRIPTION | 11 - MD5 | 80 +++++----- NAMESPACE | 6 NEWS | 20 ++ R/RcppExports.R | 36 +++- R/composite.R | 30 +++ R/edit.R | 22 ++ R/fx.R | 9 - R/ggplot2.R | 24 ++- R/init.R | 17 +- R/morphology.R | 1 R/options.R | 6 R/paint.R | 34 +++- R/transform.R | 27 +++ build/vignette.rds |binary configure | 8 - inst/WORDLIST | 25 +-- inst/doc/intro.R | 2 inst/doc/intro.Rmd | 13 - inst/doc/intro.html | 367 +++++++++++++++++++++++++++++------------------- man/analysis.Rd | 4 man/color.Rd | 6 man/composite.Rd | 21 ++ man/edges.Rd | 2 man/editing.Rd | 15 + man/fx.Rd | 6 man/image_ggplot.Rd | 13 + man/morphology.Rd | 46 ++++++ man/options.Rd | 3 man/painting.Rd | 33 +++- man/transform.Rd | 21 ++ src/Makevars.win | 21 +- src/RcppExports.cpp | 106 ++++++++++--- src/base.cpp | 5 src/composite.cpp | 59 +++++++ src/convolve.cpp | 2 src/magick_types.h | 3 src/options.cpp | 19 +- src/resize.cpp | 12 - src/transformations.cpp | 50 +++++- vignettes/intro.Rmd | 13 - 41 files changed, 840 insertions(+), 358 deletions(-)
Title: A 'Bootstrap 4' Version of 'shinydashboard'
Description: Make 'Bootstrap 4' dashboards. Use the full power
of 'AdminLTE3', a dashboard template built on top of 'Bootstrap 4'
<https://github.com/almasaeed2010/AdminLTE/tree/v3-dev>.
Author: David Granjon [aut, cre],
RinteRface [cph],
Almasaeed Studio [ctb, cph] (AdminLTE3 theme for Bootstrap 4),
Winston Chang [ctb, cph] (Utils functions from shinydashboard),
Thomas Park [ctb, cph] (Bootswatch Sketchy theme CSS)
Maintainer: David Granjon <dgranjon@ymail.com>
Diff between bs4Dash versions 0.3.0 dated 2019-04-06 and 0.4.0 dated 2019-07-25
bs4Dash-0.3.0/bs4Dash/inst/examples/showcase/classic/rsconnect/130.60.24.205 |only bs4Dash-0.3.0/bs4Dash/man/figures/bs4Dash1.png |only bs4Dash-0.3.0/bs4Dash/man/figures/bs4Dash1.svg |only bs4Dash-0.3.0/bs4Dash/man/figures/bs4Dash_Lorenz.png |only bs4Dash-0.3.0/bs4Dash/man/figures/bs4Dash_ratp.png |only bs4Dash-0.4.0/bs4Dash/DESCRIPTION | 11 bs4Dash-0.4.0/bs4Dash/MD5 | 124 bs4Dash-0.4.0/bs4Dash/NAMESPACE | 39 bs4Dash-0.4.0/bs4Dash/NEWS.md | 40 bs4Dash-0.4.0/bs4Dash/R/aliases.R |only bs4Dash-0.4.0/bs4Dash/R/cards.R | 130 bs4Dash-0.4.0/bs4Dash/R/dashboardControlbar.R | 25 bs4Dash-0.4.0/bs4Dash/R/dashboardSidebar.R | 375 bs4Dash-0.4.0/bs4Dash/R/deps.R | 2 bs4Dash-0.4.0/bs4Dash/R/update-functions.R |only bs4Dash-0.4.0/bs4Dash/R/useful-items.R | 191 bs4Dash-0.4.0/bs4Dash/R/utils.R | 29 bs4Dash-0.4.0/bs4Dash/README.md | 11 bs4Dash-0.4.0/bs4Dash/build/vignette.rds |binary bs4Dash-0.4.0/bs4Dash/inst/AdminLTE3-3.0.0/adminlte.css | 6420 ++++++++-- bs4Dash-0.4.0/bs4Dash/inst/AdminLTE3-3.0.0/adminlte.js | 1508 +- bs4Dash-0.4.0/bs4Dash/inst/AdminLTE3-3.0.0/adminlte.js.map |only bs4Dash-0.4.0/bs4Dash/inst/AdminLTE3-3.0.0/adminlte.min.css | 12 bs4Dash-0.4.0/bs4Dash/inst/AdminLTE3-3.0.0/adminlte.min.js | 29 bs4Dash-0.4.0/bs4Dash/inst/AdminLTE3-3.0.0/adminlte.min.js.map |only bs4Dash-0.4.0/bs4Dash/inst/UI_tests |only bs4Dash-0.4.0/bs4Dash/inst/bs4Dash-0.2.0/bs4Dash.css | 12 bs4Dash-0.4.0/bs4Dash/inst/bs4Dash-0.2.0/bs4Dash.js | 24 bs4Dash-0.4.0/bs4Dash/inst/bs4Dash-0.2.0/leftSidebar.js |only bs4Dash-0.4.0/bs4Dash/inst/bs4Dash-0.2.0/navbar.js |only bs4Dash-0.4.0/bs4Dash/inst/bs4Dash-0.2.0/update-tabs.js |only bs4Dash-0.4.0/bs4Dash/inst/doc/bs4Intro.html | 10 bs4Dash-0.4.0/bs4Dash/inst/doc/bs4Themes.html | 10 bs4Dash-0.4.0/bs4Dash/inst/doc/bs4cards.html | 10 bs4Dash-0.4.0/bs4Dash/inst/doc/bs4sortable.html | 10 bs4Dash-0.4.0/bs4Dash/inst/examples/showcase/classic/app.R | 92 bs4Dash-0.4.0/bs4Dash/inst/examples/showcase/classic/global.R | 159 bs4Dash-0.4.0/bs4Dash/inst/examples/showcase/classic/rsconnect/shinyapps.io/dgranjon/bs4DashDemo.dcf | 5 bs4Dash-0.4.0/bs4Dash/inst/examples/showcase/classic/tests |only bs4Dash-0.4.0/bs4Dash/inst/examples/showcase/old_school/global.R | 44 bs4Dash-0.4.0/bs4Dash/man/attachmentBlock.Rd | 2 bs4Dash-0.4.0/bs4Dash/man/bs4Card.Rd | 40 bs4Dash-0.4.0/bs4Dash/man/bs4DashBody.Rd | 5 bs4Dash-0.4.0/bs4Dash/man/bs4DashControlbar.Rd | 11 bs4Dash-0.4.0/bs4Dash/man/bs4DashControlbarItem.Rd |only bs4Dash-0.4.0/bs4Dash/man/bs4DashControlbarMenu.Rd |only bs4Dash-0.4.0/bs4Dash/man/bs4DashFooter.Rd | 5 bs4Dash-0.4.0/bs4Dash/man/bs4DashNavbar.Rd | 7 bs4Dash-0.4.0/bs4Dash/man/bs4DashPage.Rd | 82 bs4Dash-0.4.0/bs4Dash/man/bs4DashSidebar.Rd | 15 bs4Dash-0.4.0/bs4Dash/man/bs4DropdownMenu.Rd | 7 bs4Dash-0.4.0/bs4Dash/man/bs4DropdownMenuItem.Rd | 5 bs4Dash-0.4.0/bs4Dash/man/bs4InfoBox.Rd | 6 bs4Dash-0.4.0/bs4Dash/man/bs4InfoBoxOutput.Rd |only bs4Dash-0.4.0/bs4Dash/man/bs4SidebarHeader.Rd | 5 bs4Dash-0.4.0/bs4Dash/man/bs4SidebarMenu.Rd | 73 bs4Dash-0.4.0/bs4Dash/man/bs4SidebarMenuItem.Rd | 15 bs4Dash-0.4.0/bs4Dash/man/bs4SidebarMenuSubItem.Rd |only bs4Dash-0.4.0/bs4Dash/man/bs4SidebarUserPanel.Rd | 5 bs4Dash-0.4.0/bs4Dash/man/bs4TabCard.Rd | 16 bs4Dash-0.4.0/bs4Dash/man/bs4TabItem.Rd | 8 bs4Dash-0.4.0/bs4Dash/man/bs4TabItems.Rd | 8 bs4Dash-0.4.0/bs4Dash/man/bs4TabPanel.Rd | 8 bs4Dash-0.4.0/bs4Dash/man/bs4TabSetPanel.Rd | 30 bs4Dash-0.4.0/bs4Dash/man/bs4Table.Rd |only bs4Dash-0.4.0/bs4Dash/man/bs4TableItem.Rd |only bs4Dash-0.4.0/bs4Dash/man/bs4TableItems.Rd |only bs4Dash-0.4.0/bs4Dash/man/bs4ValueBox.Rd | 6 bs4Dash-0.4.0/bs4Dash/man/bs4ValueBoxOutput.Rd | 5 bs4Dash-0.4.0/bs4Dash/man/figures/bs4Dash.svg |only bs4Dash-0.4.0/bs4Dash/man/renderbs4InfoBox.Rd |only bs4Dash-0.4.0/bs4Dash/man/renderbs4ValueBox.Rd | 5 bs4Dash-0.4.0/bs4Dash/man/updatebs4ControlbarMenu.Rd |only bs4Dash-0.4.0/bs4Dash/man/updatebs4TabItems.Rd |only bs4Dash-0.4.0/bs4Dash/man/updatebs4TabSetPanel.Rd |only 75 files changed, 7949 insertions(+), 1742 deletions(-)
Title: Seamless R and C++ Integration
Description: The 'Rcpp' package provides R functions as well as C++ classes which
offer a seamless integration of R and C++. Many R data types and objects can be
mapped back and forth to C++ equivalents which facilitates both writing of new
code as well as easier integration of third-party libraries. Documentation
about 'Rcpp' is provided by several vignettes included in this package, via the
'Rcpp Gallery' site at <http://gallery.rcpp.org>, the paper by Eddelbuettel and
Francois (2011, <doi:10.18637/jss.v040.i08>), the book by Eddelbuettel (2013,
<doi:10.1007/978-1-4614-6868-4>) and the paper by Eddelbuettel and Balamuta (2018,
<doi:10.1080/00031305.2017.1375990>); see 'citation("Rcpp")' for details.
Author: Dirk Eddelbuettel, Romain Francois, JJ Allaire, Kevin Ushey, Qiang Kou,
Nathan Russell, Douglas Bates and John Chambers
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between Rcpp versions 1.0.1 dated 2019-03-17 and 1.0.2 dated 2019-07-25
Rcpp-1.0.1/Rcpp/src/Date.cpp |only Rcpp-1.0.1/Rcpp/src/Module.cpp |only Rcpp-1.0.1/Rcpp/src/Rcpp_init.cpp |only Rcpp-1.0.2/Rcpp/ChangeLog | 88 +++++++++++++ Rcpp-1.0.2/Rcpp/DESCRIPTION | 10 - Rcpp-1.0.2/Rcpp/MD5 | 81 ++++++----- Rcpp-1.0.2/Rcpp/NAMESPACE | 3 Rcpp-1.0.2/Rcpp/R/Rcpp.package.skeleton.R | 5 Rcpp-1.0.2/Rcpp/R/tools.R | 31 ++++ Rcpp-1.0.2/Rcpp/build/vignette.rds |binary Rcpp-1.0.2/Rcpp/inst/NEWS.Rd | 42 +++++- Rcpp-1.0.2/Rcpp/inst/bib/Rcpp.bib | 34 ++--- Rcpp-1.0.2/Rcpp/inst/doc/Rcpp-FAQ.pdf |binary Rcpp-1.0.2/Rcpp/inst/doc/Rcpp-attributes.pdf |binary Rcpp-1.0.2/Rcpp/inst/doc/Rcpp-extending.Rmd | 15 +- Rcpp-1.0.2/Rcpp/inst/doc/Rcpp-extending.pdf |binary Rcpp-1.0.2/Rcpp/inst/doc/Rcpp-introduction.pdf |binary Rcpp-1.0.2/Rcpp/inst/doc/Rcpp-jss-2011.pdf |binary Rcpp-1.0.2/Rcpp/inst/doc/Rcpp-modules.R | 6 Rcpp-1.0.2/Rcpp/inst/doc/Rcpp-modules.Rmd | 52 +++++++ Rcpp-1.0.2/Rcpp/inst/doc/Rcpp-modules.pdf |binary Rcpp-1.0.2/Rcpp/inst/doc/Rcpp-package.pdf |binary Rcpp-1.0.2/Rcpp/inst/doc/Rcpp-quickref.pdf |binary Rcpp-1.0.2/Rcpp/inst/doc/Rcpp-sugar.pdf |binary Rcpp-1.0.2/Rcpp/inst/doc/Rcpp.bib | 34 ++--- Rcpp-1.0.2/Rcpp/inst/include/Rcpp/config.h | 6 Rcpp-1.0.2/Rcpp/inst/include/Rcpp/macros/macros.h | 4 Rcpp-1.0.2/Rcpp/inst/include/Rcpp/sugar/functions/unique.h | 4 Rcpp-1.0.2/Rcpp/inst/unitTests/cpp/attributes.cpp | 15 ++ Rcpp-1.0.2/Rcpp/inst/unitTests/cpp/sugar.cpp | 6 Rcpp-1.0.2/Rcpp/inst/unitTests/runit.attributes.R | 12 + Rcpp-1.0.2/Rcpp/inst/unitTests/runit.misc.R | 9 + Rcpp-1.0.2/Rcpp/inst/unitTests/runit.sugar.R | 30 ++++ Rcpp-1.0.2/Rcpp/man/getRcppVersion.Rd |only Rcpp-1.0.2/Rcpp/src/api.cpp | 8 + Rcpp-1.0.2/Rcpp/src/attributes.cpp | 45 ++++-- Rcpp-1.0.2/Rcpp/src/date.cpp |only Rcpp-1.0.2/Rcpp/src/internal.h | 2 Rcpp-1.0.2/Rcpp/src/module.cpp |only Rcpp-1.0.2/Rcpp/src/rcpp_init.cpp |only Rcpp-1.0.2/Rcpp/tests/doRUnit.R | 10 + Rcpp-1.0.2/Rcpp/vignettes/Rcpp-extending.Rmd | 15 +- Rcpp-1.0.2/Rcpp/vignettes/Rcpp-modules.Rmd | 52 +++++++ Rcpp-1.0.2/Rcpp/vignettes/Rcpp.bib | 34 ++--- Rcpp-1.0.2/Rcpp/vignettes/figures/bootstrap.pdf |binary 45 files changed, 513 insertions(+), 140 deletions(-)
Title: Mixture and Composite Distributions
Description: A flexible computational framework for mixture distributions with the focus on the composite models.
Author: Lukas Sablica [aut, cre],
Kurt Hornik [aut] (<https://orcid.org/0000-0003-4198-9911>)
Maintainer: Lukas Sablica <lsablica@wu.ac.at>
Diff between mistr versions 0.0.1 dated 2018-12-10 and 0.0.2 dated 2019-07-25
DESCRIPTION | 6 MD5 | 25 NEWS.md |only R/compdist.R | 18 R/dpqr_new.R | 1074 ++++++++++++++++++++-------------------- R/mixdist.R | 2 R/plots.R | 130 ++-- R/standist.R | 12 R/trafo.R | 6 R/utilities.R | 168 +++--- inst/doc/mistr-extensions.pdf |binary inst/doc/mistr-introduction.pdf |binary man/autoggplot_comp_fit.Rd | 4 man/autoplot.dist.Rd | 4 14 files changed, 725 insertions(+), 724 deletions(-)
Title: Provides an R Interface to 'Enrichr'
Description: Provides an R interface to all 'Enrichr' databases. 'Enrichr' is a web-based tool for analysing gene sets and returns any enrichment of common annotated biological features. Quoting from their website 'Enrichment analysis is a computational method for inferring knowledge about an input gene set by comparing it to annotated gene sets representing prior biological knowledge.' See (<http://amp.pharm.mssm.edu/Enrichr/>) for further details.
Author: Wajid Jawaid [aut, cre]
Maintainer: Wajid Jawaid <wj241@alumni.cam.ac.uk>
Diff between enrichR versions 1.0 dated 2017-04-02 and 2.0 dated 2019-07-25
DESCRIPTION | 14 - MD5 | 23 +- R/enrichR-package.r | 7 R/functions.R | 73 ++++++- README.md | 94 +++++---- build/vignette.rds |binary data |only inst/doc/enrichR.R | 20 +- inst/doc/enrichR.Rmd | 21 +- inst/doc/enrichR.html | 474 +++++++++++++++++++++++++------------------------- man/genes790.Rd |only man/getEnrichr.Rd |only man/printEnrich.Rd | 2 vignettes/enrichR.Rmd | 21 +- 14 files changed, 425 insertions(+), 324 deletions(-)
Title: Eigenvalues and Singular Values and Vectors from Large Matrices
Description: R interface to PRIMME, a C library for computing a few
eigenvalues and their corresponding eigenvectors of a real symmetric or complex
Hermitian matrix. It can also compute singular values and vectors of a square
or rectangular matrix. It can find largest, smallest, or interior
singular/eigenvalues and can use preconditioning to accelerate convergence.
Author: Eloy Romero [aut, cre],
Andreas Stathopoulos [aut],
College of William & Mary [cph]
Maintainer: Eloy Romero <eloy@cs.wm.edu>
Diff between PRIMME versions 2.2-0 dated 2018-01-12 and 3.0-0 dated 2019-07-25
PRIMME-2.2-0/PRIMME/src/primme/eigs/const.h |only PRIMME-2.2-0/PRIMME/src/primme/eigs/globalsum.c |only PRIMME-2.2-0/PRIMME/src/primme/eigs/globalsum.h |only PRIMME-2.2-0/PRIMME/src/primme/eigs/main_iter_private.h |only PRIMME-2.2-0/PRIMME/src/primme/eigs/primme.c |only PRIMME-2.2-0/PRIMME/src/primme/eigs/primme_f77_private.h |only PRIMME-2.2-0/PRIMME/src/primme/svds/primme_svds.c |only PRIMME-2.2-0/PRIMME/src/primme/svds/primme_svds_f77_private.h |only PRIMME-3.0-0/PRIMME/DESCRIPTION | 10 PRIMME-3.0-0/PRIMME/MD5 | 137 PRIMME-3.0-0/PRIMME/R/eigs.R | 52 PRIMME-3.0-0/PRIMME/R/svds.R | 14 PRIMME-3.0-0/PRIMME/README.md | 22 PRIMME-3.0-0/PRIMME/inst/include/primme.h | 34 PRIMME-3.0-0/PRIMME/inst/include/primme_eigs.h | 277 PRIMME-3.0-0/PRIMME/inst/include/primme_eigs_f77.h | 340 PRIMME-3.0-0/PRIMME/inst/include/primme_f77.h | 2 PRIMME-3.0-0/PRIMME/inst/include/primme_svds.h | 180 PRIMME-3.0-0/PRIMME/inst/include/primme_svds_f77.h | 232 PRIMME-3.0-0/PRIMME/man/eigs_sym.Rd | 17 PRIMME-3.0-0/PRIMME/man/svds.Rd | 1 PRIMME-3.0-0/PRIMME/src/Makevars | 2 PRIMME-3.0-0/PRIMME/src/PRIMME_types.h | 2 PRIMME-3.0-0/PRIMME/src/primme/eigs/auxiliary_eigs.c | 717 + PRIMME-3.0-0/PRIMME/src/primme/eigs/auxiliary_eigs.h | 1541 ++++ PRIMME-3.0-0/PRIMME/src/primme/eigs/auxiliary_eigs_normal.c |only PRIMME-3.0-0/PRIMME/src/primme/eigs/auxiliary_eigs_normal.h |only PRIMME-3.0-0/PRIMME/src/primme/eigs/common_eigs.h |only PRIMME-3.0-0/PRIMME/src/primme/eigs/convergence.c | 187 PRIMME-3.0-0/PRIMME/src/primme/eigs/convergence.h | 275 PRIMME-3.0-0/PRIMME/src/primme/eigs/correction.c | 753 +- PRIMME-3.0-0/PRIMME/src/primme/eigs/correction.h | 656 + PRIMME-3.0-0/PRIMME/src/primme/eigs/factorize.c | 223 PRIMME-3.0-0/PRIMME/src/primme/eigs/factorize.h | 442 + PRIMME-3.0-0/PRIMME/src/primme/eigs/init.c | 216 PRIMME-3.0-0/PRIMME/src/primme/eigs/init.h | 241 PRIMME-3.0-0/PRIMME/src/primme/eigs/inner_solve.c | 1087 +-- PRIMME-3.0-0/PRIMME/src/primme/eigs/inner_solve.h | 430 + PRIMME-3.0-0/PRIMME/src/primme/eigs/main_iter.c | 1530 ++-- PRIMME-3.0-0/PRIMME/src/primme/eigs/main_iter.h | 662 + PRIMME-3.0-0/PRIMME/src/primme/eigs/ortho.c | 1068 ++ PRIMME-3.0-0/PRIMME/src/primme/eigs/ortho.h | 1172 +++ PRIMME-3.0-0/PRIMME/src/primme/eigs/primme_c.c |only PRIMME-3.0-0/PRIMME/src/primme/eigs/primme_c.h |only PRIMME-3.0-0/PRIMME/src/primme/eigs/primme_f77.c | 37 PRIMME-3.0-0/PRIMME/src/primme/eigs/primme_interface.c | 441 - PRIMME-3.0-0/PRIMME/src/primme/eigs/restart.c | 2393 ++---- PRIMME-3.0-0/PRIMME/src/primme/eigs/restart.h | 2082 +++++ PRIMME-3.0-0/PRIMME/src/primme/eigs/solve_projection.c | 686 + PRIMME-3.0-0/PRIMME/src/primme/eigs/solve_projection.h | 474 + PRIMME-3.0-0/PRIMME/src/primme/eigs/template_normal.h |only PRIMME-3.0-0/PRIMME/src/primme/eigs/update_W.c | 135 PRIMME-3.0-0/PRIMME/src/primme/eigs/update_W.h | 196 PRIMME-3.0-0/PRIMME/src/primme/eigs/update_projection.c | 92 PRIMME-3.0-0/PRIMME/src/primme/eigs/update_projection.h | 138 PRIMME-3.0-0/PRIMME/src/primme/include/auxiliary.h | 1777 ++++ PRIMME-3.0-0/PRIMME/src/primme/include/blaslapack.h | 3597 +++++++++- PRIMME-3.0-0/PRIMME/src/primme/include/common.h |only PRIMME-3.0-0/PRIMME/src/primme/include/magma_wrapper.h |only PRIMME-3.0-0/PRIMME/src/primme/include/memman.h |only PRIMME-3.0-0/PRIMME/src/primme/include/notemplate.h | 18 PRIMME-3.0-0/PRIMME/src/primme/include/numerical.h | 6 PRIMME-3.0-0/PRIMME/src/primme/include/primme_interface.h | 8 PRIMME-3.0-0/PRIMME/src/primme/include/template.h | 570 - PRIMME-3.0-0/PRIMME/src/primme/include/template_types.h |only PRIMME-3.0-0/PRIMME/src/primme/include/template_undef.h |only PRIMME-3.0-0/PRIMME/src/primme/include/wtime.h | 8 PRIMME-3.0-0/PRIMME/src/primme/linalg/auxiliary.c | 606 + PRIMME-3.0-0/PRIMME/src/primme/linalg/blaslapack.c | 1598 +++- PRIMME-3.0-0/PRIMME/src/primme/linalg/blaslapack_private.h | 108 PRIMME-3.0-0/PRIMME/src/primme/linalg/magma_wrapper.c |only PRIMME-3.0-0/PRIMME/src/primme/linalg/memman.c |only PRIMME-3.0-0/PRIMME/src/primme/linalg/wtime.c | 73 PRIMME-3.0-0/PRIMME/src/primme/make_primme | 22 PRIMME-3.0-0/PRIMME/src/primme/svds/primme_svds_c.c |only PRIMME-3.0-0/PRIMME/src/primme/svds/primme_svds_c.h |only PRIMME-3.0-0/PRIMME/src/primme/svds/primme_svds_f77.c | 28 PRIMME-3.0-0/PRIMME/src/primme/svds/primme_svds_interface.c | 273 PRIMME-3.0-0/PRIMME/src/primme/svds/primme_svds_interface.h | 8 PRIMME-3.0-0/PRIMME/src/primme/zhegv.c | 8 PRIMME-3.0-0/PRIMME/src/primmeR.cpp | 104 81 files changed, 21281 insertions(+), 6727 deletions(-)
Title: Single-Case Visual Analysis
Description: Make graphical representations of single case data and transform graphical displays back to raw data, as discussed in Bulte and Onghena (2013) <doi:10.22237/jmasm/1383280020>. The package also includes tools for visually analyzing single-case data, by displaying central location, variability and trend.
Author: Isis Bulte and Patrick Onghena
Maintainer: Tamal Kumar De <tamalkumar.de@kuleuven.be>
Diff between SCVA versions 1.2.1 dated 2017-06-01 and 1.3.0 dated 2019-07-25
DESCRIPTION | 13 - MD5 | 24 +-- NAMESPACE | 8 - R/graph.CL.R | 88 ++++++------ R/graph.R | 18 +- R/graph.TREND.R | 376 ++++++++++++++++++++++++++-------------------------- R/graph.VAR.R | 282 ++++++++++++++++++++------------------- R/graphly.R |only man/SCVA-package.Rd | 4 man/graph.CL.Rd | 7 man/graph.Rd | 7 man/graph.TREND.Rd | 7 man/graph.VAR.Rd | 7 man/graphly.Rd |only 14 files changed, 444 insertions(+), 397 deletions(-)
Title: Single-Case Randomization Tests
Description: Design single-case phase, alternation and multiple-baseline experiments, and conduct randomization tests on data gathered by means of such designs, as discussed in Bulte and Onghena (2013) <doi:10.22237/jmasm/1383280020>.
Author: Isis Bulte and Patrick Onghena
Maintainer: Tamal Kumar De <tamalkumar.de@kuleuven.be>
Diff between SCRT versions 1.2.2 dated 2018-03-07 and 1.3.0 dated 2019-07-25
DESCRIPTION | 10 - MD5 | 28 +-- R/distribution.random.R | 219 +++++++++----------------- R/distribution.systematic.R | 195 ++++++++--------------- R/graph1.R | 18 +- R/observed.R | 90 ++++++---- R/pvalue.random.R | 325 ++++++++++++++++----------------------- R/pvalue.systematic.R | 337 +++++++++++++++++++---------------------- man/SCRT-package.Rd | 4 man/distribution.random.Rd | 8 man/distribution.systematic.Rd | 8 man/graph1.Rd | 5 man/observed.Rd | 6 man/pvalue.random.Rd | 8 man/pvalue.systematic.Rd | 8 15 files changed, 557 insertions(+), 712 deletions(-)
Title: Single-Case Meta-Analysis
Description: Perform meta-analysis of single-case experiments, including calculating various effect size measures (SMD, PND, PEM and NAP) and probability combining (additive and multiplicative method), as discussed in Bulte and Onghena (2013) <doi:10.22237/jmasm/1383280020>.
Author: Isis Bulte and Patrick Onghena
Maintainer: Tamal Kumar De <tamalkumar.de@kuleuven.be>
Diff between SCMA versions 1.2.1 dated 2017-10-26 and 1.3.0 dated 2019-07-25
DESCRIPTION | 14 +++++++------- MD5 | 10 +++++----- NAMESPACE | 2 +- R/ES.R | 19 +++++++++++++++++-- man/ES.Rd | 5 ++++- man/SCMA-package.Rd | 4 ++-- 6 files changed, 36 insertions(+), 18 deletions(-)
Title: Enterprise Streamlined 'Shiny' Application Framework
Description: An enterprise-targeted scalable and UI-standardized 'shiny' framework
including a variety of developer convenience functions with the goal of both
streamlining robust application development while assisting with creating a
consistent user experience regardless of application or developer.
Author: Constance Brett [aut, cre],
Isaac Neuhaus [aut] (canvasXpress JavaScript Library Maintainer),
Ger Inberg [ctb],
Bristol-Meyers Squibb (BMS) [cph]
Maintainer: Constance Brett <connie@aggregate-genius.com>
Diff between periscope versions 0.4.2 dated 2019-04-30 and 0.4.3 dated 2019-07-25
DESCRIPTION | 6 +++--- MD5 | 16 ++++++++-------- NEWS.md | 3 +++ R/downloadFile.R | 7 ++++++- build/vignette.rds |binary inst/doc/downloadFile-module.html | 4 ++-- inst/doc/downloadablePlot-module.html | 4 ++-- inst/doc/downloadableTable-module.html | 4 ++-- inst/doc/new-application.html | 4 ++-- 9 files changed, 28 insertions(+), 20 deletions(-)
Title: Actuarial Functions and Heavy Tailed Distributions
Description: Functions and data sets for actuarial science:
modeling of loss distributions; risk theory and ruin theory;
simulation of compound models, discrete mixtures and compound
hierarchical models; credibility theory. Support for many additional
probability distributions to model insurance loss amounts and loss
frequency: 19 continuous heavy tailed distributions; the
Poisson-inverse Gaussian discrete distribution; zero-truncated and
zero-modified extensions of the standard discrete distributions.
Support for phase-type distributions commonly used to compute ruin
probabilities.
Author: Vincent Goulet [cre, aut],
Sébastien Auclair [ctb],
Christophe Dutang [aut],
Nicholas Langevin [ctb],
Xavier Milhaud [ctb],
Tommy Ouellet [ctb],
Alexandre Parent [ctb],
Mathieu Pigeon [aut],
Louis-Philippe Pouliot [ctb]
Maintainer: Vincent Goulet <vincent.goulet@act.ulaval.ca>
Diff between actuar versions 2.3-1 dated 2018-03-19 and 2.3-2 dated 2019-07-25
DESCRIPTION | 14 ++++--- MD5 | 68 +++++++++++++++++++---------------- README.md |only build/vignette.rds |binary inst/NEWS.Rd | 31 +++++++++++++++ inst/doc/actuar.Rnw | 2 - inst/doc/actuar.pdf |binary inst/doc/coverage.pdf |binary inst/doc/credibility.Rnw | 2 - inst/doc/credibility.pdf |binary inst/doc/distributions.Rnw | 16 ++++---- inst/doc/distributions.pdf |binary inst/doc/modeling.Rnw | 2 - inst/doc/modeling.pdf |binary inst/doc/risk.Rnw | 2 - inst/doc/risk.pdf |binary inst/doc/simulation.R | 34 ++++++++--------- inst/doc/simulation.Rnw | 62 +++++++++++++++++-------------- inst/doc/simulation.pdf |binary man/CTE.Rd | 1 man/Pareto.Rd | 6 +++ man/SingleParameterPareto.Rd | 3 + man/ZeroTruncatedNegativeBinomial.Rd | 2 - src/actuar.h | 1 src/logarithmic.c | 8 ++-- src/zmgeom.c | 3 + vignettes/actuar.Rnw | 2 - vignettes/auto/actuar.el |only vignettes/auto/credibility.el |only vignettes/auto/distributions.el | 5 -- vignettes/auto/modeling.el |only vignettes/auto/risk.el |only vignettes/auto/simulation.el |only vignettes/credibility.Rnw | 2 - vignettes/distributions.Rnw | 16 ++++---- vignettes/modeling.Rnw | 2 - vignettes/risk.Rnw | 2 - vignettes/simulation.Rnw | 62 +++++++++++++++++-------------- 38 files changed, 203 insertions(+), 145 deletions(-)
Title: Semi-Supervised Model for Geographical Document Classification
Description: Semi-supervised model for geographical document classification (Watanabe 2018) <doi:10.1080/21670811.2017.1293487>.
This package currently contains seed dictionaries in English, German, French, Spanish, Japanese, Russian and Chinese (Simplified and Traditional).
Author: Kohei Watanabe [aut, cre, cph],
Stefan Müller [aut],
Dani Madrid-Morales [aut],
Katerina Tertytchnaya [aut],
Ke Cheng [aut],
Chung-hong Chan [aut],
Claude Grasland [aut],
Giuseppe Carteny [aut]
Maintainer: Kohei Watanabe <watanabe.kohei@gmail.com>
Diff between newsmap versions 0.6.7 dated 2019-04-23 and 0.6.8 dated 2019-07-25
DESCRIPTION | 14 ++++++++------ MD5 | 12 +++++++----- NEWS.md | 4 ++++ R/data.R | 8 ++++++++ README.md | 25 ++++++++++++++----------- data/data_dictionary_newsmap_it.RData |only man/data_dictionary_newsmap_it.Rd |only tests/testthat/test-data.R | 3 +++ 8 files changed, 44 insertions(+), 22 deletions(-)
Title: Functions Supporting Packages ChemoSpec and ChemoSpec2D
Description: Functions supporting the common needs of packages 'ChemoSpec' and 'ChemoSpec2D'.
Author: Bryan A. Hanson [aut, cre] (<https://orcid.org/0000-0003-3536-8246>)
Maintainer: Bryan A. Hanson <hanson@depauw.edu>
Diff between ChemoSpecUtils versions 0.3.20 dated 2019-06-09 and 0.3.39 dated 2019-07-25
ChemoSpecUtils-0.3.20/ChemoSpecUtils/tests/testthat |only ChemoSpecUtils-0.3.20/ChemoSpecUtils/tests/testthat.R |only ChemoSpecUtils-0.3.39/ChemoSpecUtils/DESCRIPTION | 14 +- ChemoSpecUtils-0.3.39/ChemoSpecUtils/MD5 | 67 +++++----- ChemoSpecUtils-0.3.39/ChemoSpecUtils/NEWS.md | 10 + ChemoSpecUtils-0.3.39/ChemoSpecUtils/R/chkSpectra.R | 2 ChemoSpecUtils-0.3.39/ChemoSpecUtils/R/chkSpectra.Spectra.R | 8 + ChemoSpecUtils-0.3.39/ChemoSpecUtils/R/chkSpectra.Spectra2D.R | 8 + ChemoSpecUtils-0.3.39/ChemoSpecUtils/R/conColScheme.R | 2 ChemoSpecUtils-0.3.39/ChemoSpecUtils/R/hcaScores.R | 27 ++-- ChemoSpecUtils-0.3.39/ChemoSpecUtils/R/plotScores.R | 8 - ChemoSpecUtils-0.3.39/ChemoSpecUtils/R/plotScree.R | 2 ChemoSpecUtils-0.3.39/ChemoSpecUtils/R/remGrpSam.R | 1 ChemoSpecUtils-0.3.39/ChemoSpecUtils/R/removeFreq.R | 2 ChemoSpecUtils-0.3.39/ChemoSpecUtils/R/removeGroup.R | 2 ChemoSpecUtils-0.3.39/ChemoSpecUtils/R/removeSample.R | 2 ChemoSpecUtils-0.3.39/ChemoSpecUtils/R/rowDist.R | 2 ChemoSpecUtils-0.3.39/ChemoSpecUtils/R/scorePlot.R | 12 + ChemoSpecUtils-0.3.39/ChemoSpecUtils/R/sumGroups.R | 2 ChemoSpecUtils-0.3.39/ChemoSpecUtils/R/sumSpectra.R | 2 ChemoSpecUtils-0.3.39/ChemoSpecUtils/R/updateGroups.R | 4 ChemoSpecUtils-0.3.39/ChemoSpecUtils/inst |only ChemoSpecUtils-0.3.39/ChemoSpecUtils/man/chkSpectra.Rd | 2 ChemoSpecUtils-0.3.39/ChemoSpecUtils/man/conColScheme.Rd | 2 ChemoSpecUtils-0.3.39/ChemoSpecUtils/man/hcaScores.Rd | 27 ++-- ChemoSpecUtils-0.3.39/ChemoSpecUtils/man/plotScores.Rd | 8 - ChemoSpecUtils-0.3.39/ChemoSpecUtils/man/plotScree.Rd | 2 ChemoSpecUtils-0.3.39/ChemoSpecUtils/man/removeFreq.Rd | 2 ChemoSpecUtils-0.3.39/ChemoSpecUtils/man/removeGroup.Rd | 2 ChemoSpecUtils-0.3.39/ChemoSpecUtils/man/removeSample.Rd | 2 ChemoSpecUtils-0.3.39/ChemoSpecUtils/man/sumGroups.Rd | 2 ChemoSpecUtils-0.3.39/ChemoSpecUtils/man/sumSpectra.Rd | 2 ChemoSpecUtils-0.3.39/ChemoSpecUtils/man/updateGroups.Rd | 4 ChemoSpecUtils-0.3.39/ChemoSpecUtils/tests/tinytest.R |only 34 files changed, 117 insertions(+), 115 deletions(-)
More information about ChemoSpecUtils at CRAN
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